Citrus Sinensis ID: 013456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSNATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAWPRP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccEEEEEccccccccEEEccHHHHHHHHHHHHHcccEEEEcccccccccccccccEEEEEEEcccccccccccccccccEEEEEEcccccccccccccccHHHHHHccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccccccccEEEEccccccHHHHcccccccEEEEEEEEccHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEccccccccHHcccccccccEEEEcccEEEccEEEEcccccccccEEEEcccccccEEEEcccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccEEEEEEccccccEEEEEHHHHHHHHHHHHHHHccEEEEEcccccccccccccccEEEEEEEEccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHHHHcccccccHHccHHHHHHHHccEEcccccccHHccHHHHHHHHHHHEEccccccccccccccccccHHHHccccEEEEccccHHHHHHHHHHHHHHcEEEEEcccHHHHHHHHHHHccccEEEEEEccccccccHHcHHccccccHHHEEEEEccccccccHcccccccEEEEEEccccccccHHHHHHcccccEEEEEcccccccEEEEccccccccEEEEEcccccccEEEEccccccccEEEEEEccccccccccccccHcHHEEEEccccHHcccccccccc
Coil and Loop (DISEMBL)
mapedqakKDFHQLVLMNMIEVVKlksdgrpktcrvpsslsdylfpdaesggvfcihdgsrsnatssssdLCVCRLAEhldnlssitpsdkkQFEYLHSYLFFVKrkggkpagefGNLLKMVIAIRGYRLLRVLDledvykpvlpetigKLQLLRYVGLRRTFIDsipkslgdlhsletldmkhtnitslpksIWKVKTLRHLYLNDIHLqmsvqkpfvkpsltnlrtlwglsigkkspplnwlenlsdlkNLGLICNIASLGKITNLIQGLTSLESLRLrsindfyvpsdlaigslnnhkELKELYLlgrlpgplklhelppnlrIFTLSLSylsedpmpvlGQLRELKALRLFAHSYigekmtcgnggfpqlRVLKLWVLKELKEWTIEEGAMTALEKLeirncpklkmpteltklsnlkELTLVKKVLKmkpedawprp
Flexible Loop (DISEMBL)
mapedqakkdfhqLVLMNMIEVvklksdgrpkTCRVPSSLSDYLFPDAESGGVFCIHDGSRSNATSSSSDLCVCRLAEHLDNlssitpsdkKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDvykpvlpetigklqllryVGLRRTFIDSIPKSLGDLHSLETLDMKhtnitslpksiWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEegamtalekleirncpklkmpteltklsnlkeltlvkkvlkmkpedawprp
Low Complexity Region (SEG)
MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSNATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRvlklwvlkelkewTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNlkeltlvkkvlkmkPEDAWPRP
Disordered region (IsUnstruct)
**********FHQLVLMNMIEVVKLKS*****TCRVPSSLSDYLFPDAESGGVFCIHD***********DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVL***********
Disordered Region (DISOPRED)
MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDG*************VCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKP*******
Disordered Region (DISEMBL)
MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGS*********DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK********
Disordered Region (DISPRO)
MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGS*********DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKM*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSNATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAWPRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9XIF0	906	Putative disease resistan	yes	no	0.615	0.300	0.326	6e-25
Q9FJK8	908	Probable disease resistan	no	no	0.662	0.322	0.333	8e-25
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.669	0.328	0.315	2e-24
Q8W3K3	910	Putative disease resistan	no	no	0.658	0.319	0.341	2e-24
Q8W4J9	908	Disease resistance protei	no	no	0.667	0.324	0.325	9e-24
P0C8S1	906	Probable disease resistan	no	no	0.914	0.445	0.296	3e-23
P0DI18	1049	Probable disease resistan	no	no	0.640	0.269	0.328	3e-23
P0DI17	1049	Probable disease resistan	no	no	0.640	0.269	0.328	3e-23
P59584	910	Disease resistance protei	no	no	0.674	0.327	0.306	3e-23
A7XGN8	910	Disease susceptibility pr	no	no	0.918	0.446	0.296	1e-21

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 37/309 (11%)

Query: 130 LLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK--HT 185
           LLRVLDL+   +K   LP +IGKL  L+Y+ L +  +  +P SL +L SL  L+++    
Sbjct: 574 LLRVLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSG 633

Query: 186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
            + ++P    ++  LR+L L           P+ + SLT L              L  L 
Sbjct: 634 QLINVPNVFKEMLELRYLSL-----------PWERSSLTKLE-------------LGNLL 669

Query: 246 NLSDLKNLGL-ICNIASLGKITNL--IQGLTSLESLRLRSINDFYVP----SDLAIGSLN 298
            L  L N      ++  L ++T L  +Q L S E L + +++          DL +    
Sbjct: 670 KLETLINFSTKDSSVTDLHRMTKLRTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSE 729

Query: 299 NHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHS 358
           N  + K   L+ R P    +   P +L   +L   +L EDPMP L +L +LK + L+ ++
Sbjct: 730 NSVQFKHPKLIYR-PMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNA 788

Query: 359 YIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK-MPTELTK 417
           Y+G +M C  GGFP L  L++W L  L+EW +EEG+M  L  L I +C KLK +P  L  
Sbjct: 789 YVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRF 848

Query: 418 LSNLKELTL 426
           +S+LKEL +
Sbjct: 849 ISSLKELAI 857

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 160/318 (50%), Gaps = 25/318 (7%)

Query: 130 LLRVLDLEDV--YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI 187
           LLRVLDL  V      LP +IG L  LRY+ L    +  +P ++ +L  L  L+++  N 
Sbjct: 577 LLRVLDLSRVKFEGGKLPSSIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRVDNK 636

Query: 188 --TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
               +P  + ++  LR+L L     +M  +       L NL  LW  S    S  +  L 
Sbjct: 637 EPIHVPNVLKEMLELRYLSLPQ---EMDDKTKLELGDLVNLEYLWYFSTQHSS--VTDLL 691

Query: 246 NLSDLKNLGLICNIASLGKITNLIQGLTSLESLR-LRSINDFYVPSDLAIGS-----LNN 299
            ++ L+NLG+     SL +  N     +SL  LR L  +N  + P  + +       L++
Sbjct: 692 RMTKLRNLGV-----SLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDH 746

Query: 300 HKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359
              LK+L L  R+      H+ PP+L    L    + EDPMP+L +L  LK++ L   ++
Sbjct: 747 FIHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAF 806

Query: 360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK-MPTELTKL 418
           IG ++ C  GGFPQL  L +    EL+EW +EEG+M  L  L I +C KLK +P  L  +
Sbjct: 807 IGRRVVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYI 866

Query: 419 SNLKELTLVKKVLKMKPE 436
           ++LKEL    K+ +MK E
Sbjct: 867 TSLKEL----KIREMKRE 880

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 157/314 (50%), Gaps = 18/314 (5%)

Query: 130 LLRVLDLEDV--YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI 187
           LLRVLDL  V      LP +IG L  LR++ L +  +  +P ++ +L  +  L++ H  I
Sbjct: 569 LLRVLDLSSVKFEGGKLPSSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNL-HVAI 627

Query: 188 ---TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL 244
                +P  + ++  LR+L L    L M  +       L NL  LW  S    S  +  L
Sbjct: 628 GVPVHVPNVLKEMLELRYLSLP---LDMHDKTKLELGDLVNLEYLWCFSTQHSS--VTDL 682

Query: 245 ENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303
             ++ L+  G+      +   +++ ++    LE+L        Y+  D     + +   L
Sbjct: 683 LRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKTYMV-DYVGEFVLDFIHL 741

Query: 304 KELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK 363
           K+L L   L      H+LPP++    L   ++ EDPMP+L +L  LK++ L   ++IG +
Sbjct: 742 KKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRR 801

Query: 364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKL-KMPTELTKLSNLK 422
           M C  GGFPQLR L++    EL+EW +EEG+M  L  L I +C KL ++P  L  +++LK
Sbjct: 802 MVCSKGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLK 861

Query: 423 ELTLVKKVLKMKPE 436
           EL    K+  MK E
Sbjct: 862 EL----KIEGMKRE 871

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 155/310 (50%), Gaps = 19/310 (6%)

Query: 130 LLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK- 183
           LLRVLDL   YK       LP  IGKL  LRY+ L    +  +P SLG+L  L  LD+  
Sbjct: 582 LLRVLDL---YKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDINV 638

Query: 184 HTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNW 243
            T    +P  +  +  LR+L L       S +      +L NL TL   S    S  L  
Sbjct: 639 CTKSLFVPNCLMGMHELRYLRLP---FNTSKEIKLGLCNLVNLETLENFSTENSS--LED 693

Query: 244 LENLSDLKNL--GLICNIASLGKITNLIQGLTSLESLRLRSIN-DFYVPSDLAIGSLNNH 300
           L  +  L+ L  GL  +I+      +++ G+  LE+L +R+ +        +  G + + 
Sbjct: 694 LRGMVSLRTLTIGLFKHISKETLFASIL-GMRHLENLSIRTPDGSSKFKRIMEDGIVLDA 752

Query: 301 KELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360
             LK+L L   +P        P +L   +L    L EDP+P+L +L ELK +RL   ++ 
Sbjct: 753 IHLKQLNLRLYMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFC 812

Query: 361 GEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK-MPTELTKLS 419
           G++M   +GGFPQL  L +W L E +EW +EEG+M  L  L I NC KLK +P  L  + 
Sbjct: 813 GKRMVSSDGGFPQLHRLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIY 872

Query: 420 NLKELTLVKK 429
           ++K+L + KK
Sbjct: 873 SIKDLDMDKK 882

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 163/316 (51%), Gaps = 21/316 (6%)

Query: 130 LLRVLDLEDV--YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK--HT 185
           LLRVLDL  V      LP +IG L  LRY+ L    +  +P ++ +L  L  L+++    
Sbjct: 577 LLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDTE 636

Query: 186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
               +P  + ++  LR+L L    L+M  +       L NL  L+G S    S  +  L 
Sbjct: 637 EPIHVPNVLKEMIQLRYLSLP---LKMDDKTKLELGDLVNLEYLYGFSTQHSS--VTDLL 691

Query: 246 NLSDLKNLGLI----CNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHK 301
            ++ L+ L +     CN  +L   ++ ++ L +LE+L      + Y+   +    L++  
Sbjct: 692 RMTKLRYLAVSLSERCNFETL---SSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFI 748

Query: 302 ELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG 361
            LK+L L  R+      H+ PP+L    L    + EDPMP+L +L  LK++RL   +++G
Sbjct: 749 HLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLG 808

Query: 362 EKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK-MPTELTKLSN 420
            +M C  GGFPQL V+++    EL+EW +EEG+M  L  L I +C KLK +P  L  +++
Sbjct: 809 SRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITS 868

Query: 421 LKELTLVKKVLKMKPE 436
           LKEL    K+  MK E
Sbjct: 869 LKEL----KIEGMKRE 880

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 133/449 (29%), Positives = 208/449 (46%), Gaps = 45/449 (10%)

Query: 4   EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDA-ESGGVFCIHDGSRS 62
           +D  +    +LV  NM+ V +     R + C++   + +     A E   +  +   + +
Sbjct: 459 QDTGESYLEELVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTT 518

Query: 63  NATSSSSDLCVCR-LAEHLDN-LSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLK 120
           + T ++   C  R L  H  N L  +   D K+   +   +F V+ K  KP         
Sbjct: 519 STTINAQSPCRSRRLVLHSGNALHMLGHKDNKKARSV--LIFGVEEKFWKP--------- 567

Query: 121 MVIAIRGYR---LLRVLDLEDVY--KPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
                RG++   LLRVLDL  V      LP +IG L  LR++ L    +  +P SLG+L 
Sbjct: 568 -----RGFQCLPLLRVLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLK 622

Query: 176 SLETLDMKHTN--ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS 233
            L  L++   +  +  +P  + +++ LR+L L      M  +       L NL +L   S
Sbjct: 623 LLLCLNLGVADRLLVHVPNVLKEMQELRYLRLPR---SMPAKTKLELGDLVNLESLTNFS 679

Query: 234 IGKKSPPLNWLENLSDLKNLGLICNIASLGKIT--NLIQGLTSLESLRLRSINDFYVPSD 291
               S     + +L  +  L ++ N+   G+ T   L+  L  L +L   S +DF   S 
Sbjct: 680 TKHGS-----VTDLLRMTKLSVL-NVIFSGECTFETLLLSLRELRNLETLSFHDFQKVSV 733

Query: 292 LAIGS---LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRE 348
              G    + +   LK+L L   LP     +  PP+L    L    + EDPMP+L +L  
Sbjct: 734 ANHGGELLVLDFIHLKDLTLSMHLPRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLH 793

Query: 349 LKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPK 408
           LK++ L + +++G +M C  GGFPQL  LK+   KEL EW +EEG+M  L  L I NC K
Sbjct: 794 LKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKK 853

Query: 409 LK-MPTELTKLSNLKELTLVKKVLKMKPE 436
           LK +P  L  ++ LKEL    K+ +MK E
Sbjct: 854 LKQLPDGLKYVTCLKEL----KIERMKRE 878

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 18/301 (5%)

Query: 130 LLRVLDLE--DVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK--HT 185
           LLRVLD+    +    L  +IG+L  LRY+ L+   +  IP SLG+L  L  L++    +
Sbjct: 586 LLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVS 645

Query: 186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
             T +P  + +++ LR+L L      M  +      +L  L TL   S   K+  L  L 
Sbjct: 646 GSTLVPNVLKEMQQLRYLALPK---DMGRKTKLELSNLVKLETLKNFST--KNCSLEDLR 700

Query: 246 NLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
            +  L+ L + +    SL  +   I GL  LESL +  +       +  I  + +   LK
Sbjct: 701 GMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGI--VFDFVYLK 758

Query: 305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
            L L   +P   K    P +L    L    L EDPMP+L +L +LK L L   S+ G++M
Sbjct: 759 TLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEM 818

Query: 365 TCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK------MPTELTKL 418
            C +GGFPQL+ L +  L+E ++W +EE +M  L  L+IR+C KLK      +P+ LT +
Sbjct: 819 VCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTSI 878

Query: 419 S 419
           S
Sbjct: 879 S 879

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 18/301 (5%)

Query: 130 LLRVLDLE--DVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK--HT 185
           LLRVLD+    +    L  +IG+L  LRY+ L+   +  IP SLG+L  L  L++    +
Sbjct: 586 LLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVS 645

Query: 186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
             T +P  + +++ LR+L L      M  +      +L  L TL   S   K+  L  L 
Sbjct: 646 GSTLVPNVLKEMQQLRYLALPK---DMGRKTKLELSNLVKLETLKNFST--KNCSLEDLR 700

Query: 246 NLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
            +  L+ L + +    SL  +   I GL  LESL +  +       +  I  + +   LK
Sbjct: 701 GMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGI--VFDFVYLK 758

Query: 305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
            L L   +P   K    P +L    L    L EDPMP+L +L +LK L L   S+ G++M
Sbjct: 759 TLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEM 818

Query: 365 TCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK------MPTELTKL 418
            C +GGFPQL+ L +  L+E ++W +EE +M  L  L+IR+C KLK      +P+ LT +
Sbjct: 819 VCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTSI 878

Query: 419 S 419
           S
Sbjct: 879 S 879

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 159/313 (50%), Gaps = 15/313 (4%)

Query: 130 LLRVLDLEDV--YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL--GDLHSLETLDMKHT 185
           LLRVLDL  V      LP +IG L  LRY+ L    +  +P ++    L     L + + 
Sbjct: 579 LLRVLDLSWVKFEGGKLPCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNE 638

Query: 186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
           ++  +P  + ++  LR+L    I ++M  +       L NL  L+G S    S  +  L 
Sbjct: 639 DLIHVPNVLKEMIELRYL---SIPVKMDDKTKLELGDLVNLEYLYGFSTQHTS--VTDLL 693

Query: 246 NLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
            ++ L+NL + +    +   +++ ++ L +LE+L +      Y+   +    L++   LK
Sbjct: 694 RMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLK 753

Query: 305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
           EL L+ R+      H+ PP+L    L    + EDPMP+L +L  LK+++L   +++G +M
Sbjct: 754 ELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRM 813

Query: 365 TCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK-MPTELTKLSNLKE 423
            C   GF QL  L +    EL++W +EEG+M  L  L I +C KLK +P  L  +++LKE
Sbjct: 814 VCSKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKE 873

Query: 424 LTLVKKVLKMKPE 436
           L    K+  MK E
Sbjct: 874 L----KIEGMKRE 882

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|A7XGN8|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 203/431 (47%), Gaps = 25/431 (5%)

Query: 4   EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSN 63
           +D+ +    +L   NMI + K     R K C++   + +     A+      I   S + 
Sbjct: 467 QDKGEDYLEELARRNMITIDKNYMFLRKKHCQMHDMMREVCLSKAKEENFLEIFKVSTAT 526

Query: 64  ATSSSSDLCVCR-LAEHLDN-LSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKM 121
           +  ++  L   R L+ H  N L S+  +  K+   L  + F           EF  L   
Sbjct: 527 SAINARSLSKSRRLSVHGGNALQSLGQTINKKVRSLLYFAF---------EDEFCILEST 577

Query: 122 VIAIRGYRLLRVLDLEDV--YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLET 179
               R   LLRVLDL  V      LP +IG L  LR++ L R +I  +P SL +L  L  
Sbjct: 578 TPCFRSLPLLRVLDLSRVKFEGGKLPSSIGDLIHLRFLSLHRAWISHLPSSLRNLKLLLY 637

Query: 180 LDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP 239
           L++    +  +P  + +++ LR+L L    + M  +       L NL +L   S   K  
Sbjct: 638 LNLGFNGMVHVPNVLKEMQELRYLQLP---MSMHDKTKLELSDLVNLESLMNFST--KYA 692

Query: 240 PLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND---FYVPSDLAIGS 296
            +  L +++ L+ L L     S   +++ +  L SLE L L    +    Y   ++ +  
Sbjct: 693 SVMDLLHMTKLRELSLFITDGSSDTLSSSLGQLRSLEVLHLYDRQEPRVAYHGGEIVLNC 752

Query: 297 LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFA 356
           ++    LKEL L   +P     +   P+L    L    + EDP+P+L +L  LK++ L  
Sbjct: 753 IH----LKELELAIHMPRFPDQYLFHPHLSHIYLWCCSMEEDPIPILERLLHLKSVILTF 808

Query: 357 HSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELT 416
            +++G +M C  GGFPQL  LKL  L+EL+EW +EEG+M  L  L I NC KLK+P  + 
Sbjct: 809 GAFVGRRMVCSKGGFPQLCFLKLEELEELEEWIVEEGSMPLLRALTICNCRKLKLPGGIN 868

Query: 417 KLSNLKELTLV 427
            +++LKELT+V
Sbjct: 869 YITSLKELTIV 879

Confers susceptibility to the fungus Cochliobolus victoriae by conditioning victorin-dependent (victorin is a toxin synthesized by C.victoriae) induction of defense-associated proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
255544065	936	Disease resistance protein RPM1, putativ	0.950	0.448	0.542	1e-110
255544075	884	Disease resistance protein RPM1, putativ	0.954	0.477	0.520	1e-103
147781606	1183	hypothetical protein VITISV_025760 [Viti	0.932	0.348	0.434	2e-79
225433944	1086	PREDICTED: disease resistance RPP8-like	0.932	0.379	0.434	3e-79
297743835	1020	unnamed protein product [Vitis vinifera]	0.927	0.401	0.407	8e-77
225433948	1045	PREDICTED: putative disease resistance p	0.920	0.389	0.418	3e-76
297743817	1083	unnamed protein product [Vitis vinifera]	0.936	0.382	0.407	3e-76
147781605	829	hypothetical protein VITISV_025759 [Viti	0.936	0.499	0.407	5e-76
147856113	2540	hypothetical protein VITISV_006121 [Viti	0.943	0.164	0.416	2e-75
296081340	1282	unnamed protein product [Vitis vinifera]	0.923	0.318	0.414	3e-74

>gi|255544065|ref|XP_002513095.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223548106|gb|EEF49598.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/428 (54%), Positives = 295/428 (68%), Gaps = 8/428 (1%)

Query: 1   MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGS 60
           + PED  +  F +LV+ NMI V K + DG PKTC+V ++L D + P A   G F +H   
Sbjct: 451 IVPEDLVETHFEELVIRNMIVVEKWRLDGSPKTCKVQAALYDTILPTATDMGFFHVH--- 507

Query: 61  RSNATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLK 120
           R+          V R+AE+LD   +  PSD     YL SY+ F  RKG  PA +  NLLK
Sbjct: 508 RNYDYKDKPPFNVRRIAEYLD--INCYPSDTSHIGYLRSYISFNTRKGDTPADQVDNLLK 565

Query: 121 MVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETL 180
             I+ RG+ LL VLDLE VYKPVL E +GKL  LRY+GLR TF+D IP+S+G L  LETL
Sbjct: 566 K-ISKRGFGLLTVLDLEYVYKPVLSEALGKLLHLRYLGLRWTFLDWIPESIGKLPCLETL 624

Query: 181 DMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP 240
           D+KHTNI +LP SIWK K LRHLY+NDIH  MS QK  +K SLTNL+TLWGL +GK    
Sbjct: 625 DVKHTNIPALPISIWKAKKLRHLYMNDIHFGMSFQKQGIKVSLTNLQTLWGLLVGKSCSV 684

Query: 241 LNWLENLSDLKNLGLICNIASLGKITNLIQGL-TSLESLRLRSINDFYVPSDLAIGSLNN 299
           +NWL+ L++L+ LGL C  +S+ KI N I  L  +LESLRLRSIN+F  PSDL +G++  
Sbjct: 685 INWLQQLTNLRKLGLTCLDSSVQKIINWIPELKENLESLRLRSINEFNEPSDLDLGTMKQ 744

Query: 300 HKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359
           HK+L EL+L GRL     +HELPPNL + TLS+S L +DPMP+LG+L  L  LRLFA+SY
Sbjct: 745 HKKLSELHLFGRLV-TFDMHELPPNLTMLTLSVSQLEQDPMPILGKLPRLSILRLFANSY 803

Query: 360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLS 419
           +G++M+    GFP+LRVLKLW+L+EL+EWT+EEG+M  L+KLEIR C  LK+P  L  L+
Sbjct: 804 LGKQMSSPRNGFPELRVLKLWMLEELEEWTVEEGSMRELQKLEIRCCTNLKLPGGLYNLA 863

Query: 420 NLKELTLV 427
            L ELTL 
Sbjct: 864 ALDELTLT 871

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544075|ref|XP_002513100.1| Disease resistance protein RPM1, putative [Ricinus communis] gi|223548111|gb|EEF49603.1| Disease resistance protein RPM1, putative [Ricinus communis]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/434 (52%), Positives = 293/434 (67%), Gaps = 12/434 (2%)

Query: 4   EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSN 63
           ED AK  F +LV  NMIEVVK + DG PKTC +  +L + LF  A   G F +H  +   
Sbjct: 444 EDLAKSYFEKLVSRNMIEVVKWRLDGSPKTCYLSPTLHEALFHIAGKMGFFHVHPLT--- 500

Query: 64  ATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVI 123
            +  +    V R+AE+LD +++   SD    + L SY+ F  RKG  PAG    LL+ +I
Sbjct: 501 -SKDTQQFNVRRIAEYLD-INTYLSSDP-TIQDLRSYISFNSRKGDTPAGGVDKLLRKII 557

Query: 124 AIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK 183
           A RG+ LL VLDLE+V++P L ET+GKL  L+Y+GLR TF+DS+PK +G L  LETLDMK
Sbjct: 558 AKRGFGLLTVLDLENVHRPSLSETLGKLLQLKYLGLRCTFLDSVPKCIGKLPCLETLDMK 617

Query: 184 HTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNW 243
           HTNIT+LP SIWKVK LRHLY+N+IH  MS+Q P     L +L+TL GL IG  S  +  
Sbjct: 618 HTNITTLPISIWKVKKLRHLYMNEIHFDMSMQNPSAGGCLPDLQTLSGLLIGNNSSVIKL 677

Query: 244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303
           LE L+ L+ LGL C  ASL KI   +  L +LESL+LRSIN+ + PSDL + +L  + +L
Sbjct: 678 LEGLTGLRKLGLTCYKASLEKIIQWLPTLKNLESLKLRSINELHQPSDLNLITLKENAKL 737

Query: 304 KELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK 363
           +ELYLLG+LP    +H+LP NLR FTLS+S L EDPMP+LG+L  L  LR FAHSY+G++
Sbjct: 738 QELYLLGKLPKNFAVHQLPQNLRNFTLSVSKLHEDPMPILGKLNNLHILRFFAHSYLGKE 797

Query: 364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKE 423
           M C   GFP+LRVLKLW+L+EL+EWT+EEG+M  L K+EIR C +LK    L  L++LK+
Sbjct: 798 MDC-RKGFPELRVLKLWMLEELEEWTVEEGSMPKLRKVEIRCCIQLKQHRGLQLLASLKK 856

Query: 424 LTLVKKVLKMKPED 437
           LTL        PED
Sbjct: 857 LTLTA-----MPED 865

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781606|emb|CAN64832.1| hypothetical protein VITISV_025760 [Vitis vinifera]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 269/446 (60%), Gaps = 34/446 (7%)

Query: 4    EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSN 63
            ED A+    +L+   M++V K K +G  KTCR+P +L  +    A        H  +RS 
Sbjct: 735  EDVAEICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSE 794

Query: 64   ATSSSSDLCVCRLAEHLD---------------NLSSITPSDKKQFEYLHSYLFFVKRKG 108
             + S+    V RL +HLD                L+S+ P    ++++  S+L F  ++G
Sbjct: 795  LSLSTG--LVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKP----RYQHALSFLSFDTQEG 848

Query: 109  GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP 168
             KP  + GN L   I+   + LLRVLDLE V++P LPETIGKL  LRY+GLR TF++ +P
Sbjct: 849  SKPGEDIGNFLHRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLP 908

Query: 169  KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRT 228
             S+  L +L+TLD+KHT I  LP SIWK++ LRHLYL++ +    + +P V  SLTNL+T
Sbjct: 909  SSISKLQNLQTLDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQPRVG-SLTNLQT 967

Query: 229  LWGLSIGKKSPPLNWLENLSDLKNLGLICNI---------ASLGKITNLIQGLTSLESLR 279
            LWGL + +++P  + L+ L +LK LGL C +         A L  + N +  L  L +LR
Sbjct: 968  LWGLFVDEETPVKDGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLR 1027

Query: 280  LRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDP 339
            L+S +    P DL +  L+  ++L  +YLLGRL  PL + E P +L   TLS S L+EDP
Sbjct: 1028 LKSDDGENQPGDLDLKPLSGLEKLSSIYLLGRLKNPLVVFESPESLSDLTLSGSGLTEDP 1087

Query: 340  MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALE 399
            +  L +L  LK LRL A SY+G+ M C +GGFPQLRVLKLW L+EL+EW +EEGA+ AL 
Sbjct: 1088 LQKLDKLPNLKILRLLAKSYMGKNMLCSSGGFPQLRVLKLWKLEELEEWNVEEGALRALR 1147

Query: 400  KLEIRNCPKLKM-PTELT--KLSNLK 422
             LEIR+CP+LKM P EL    L NLK
Sbjct: 1148 DLEIRSCPRLKMLPKELQHRNLMNLK 1173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433944|ref|XP_002267359.1| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 194/446 (43%), Positives = 269/446 (60%), Gaps = 34/446 (7%)

Query: 4    EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSN 63
            ED A+    +L+   M++V K K +G  KTCR+P +L  +    A        H  +RS 
Sbjct: 638  EDVAEICLIKLIAQGMVQVTKKKLNGDVKTCRLPDALQRHWLSKARQTTFLQFHTNTRSE 697

Query: 64   ATSSSSDLCVCRLAEHLD---------------NLSSITPSDKKQFEYLHSYLFFVKRKG 108
             + S+    V RL +HLD                L+S+ P    ++++  S+L F  ++G
Sbjct: 698  LSLSTG--LVRRLVDHLDKEDFSYGHIHGEYNRTLTSLKP----RYQHALSFLSFDTQEG 751

Query: 109  GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP 168
             KP  + GN L   I+   + LLRVLDLE V++P LPETIGKL  LRY+GLR TF++ +P
Sbjct: 752  SKPGEDIGNFLHRCISSSCFLLLRVLDLEHVFRPKLPETIGKLSRLRYLGLRWTFLEMLP 811

Query: 169  KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRT 228
             S+  L +L+TLD+KHT I  LP SIWK++ LRHLYL++ +    + +P V  SLTNL+T
Sbjct: 812  SSISKLQNLQTLDLKHTYINILPNSIWKIQQLRHLYLSESYRSKFMPQPRVG-SLTNLQT 870

Query: 229  LWGLSIGKKSPPLNWLENLSDLKNLGLICNI---------ASLGKITNLIQGLTSLESLR 279
            LWGL + +++P  + L+ L +LK LGL C +         A L  + N +  L  L +LR
Sbjct: 871  LWGLFVDEETPVKDGLDRLVNLKKLGLTCRLMPSQQQAMLAQLEAVANWVLKLDHLHTLR 930

Query: 280  LRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDP 339
            L+S +    P DL +  L+  ++L  +YLLGRL  PL + E P +L   TLS S L+EDP
Sbjct: 931  LKSDDGENQPGDLDLKPLSGLEKLSSIYLLGRLKNPLVVFESPESLSDLTLSGSGLTEDP 990

Query: 340  MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALE 399
            +  L +L  LK LRL A SY+G+ M C +GGFPQLRVLKLW L+EL+EW +EEGA+ AL 
Sbjct: 991  LQKLDKLPNLKILRLLAKSYMGKNMLCSSGGFPQLRVLKLWKLEELEEWNVEEGALRALR 1050

Query: 400  KLEIRNCPKLKM-PTELT--KLSNLK 422
             LEIR+CP+LKM P EL    L NLK
Sbjct: 1051 DLEIRSCPRLKMLPKELQHRNLMNLK 1076

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743835|emb|CBI36718.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 177/434 (40%), Positives = 256/434 (58%), Gaps = 24/434 (5%)

Query: 3    PEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRS 62
            PED A +   +L+  ++++V K K DG  KTCR+P +L  +    A+      ++  +RS
Sbjct: 571  PEDVAGRCLIELIAEDVVQVTKKKLDGNVKTCRLPYALRQHWLSKAQQATFVQVYAKTRS 630

Query: 63   NATSSSSDLCVCRLAEHLD-----------NLSSITPSDKKQFEYLHSYLFFVKRKGGKP 111
              + S+    V RL +HLD           + S I+ S +  ++ + S++ F  ++G KP
Sbjct: 631  ELSISTG--LVRRLVDHLDKEDFSFDHIHGDYSRISTSLRPHYQGVVSFISFDSQEGNKP 688

Query: 112  AGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL 171
              + G  L   I+   + LLRVLDLE V++P LPE +GKL  LRY+GLR TF++ +P S+
Sbjct: 689  GEDIGKFLHQCISSSCFLLLRVLDLEHVFRPKLPEALGKLTRLRYLGLRWTFLEMLPSSI 748

Query: 172  GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231
              L +L+TLD+KHT I++LP SIWK++ LRHL L++ +      +P V  SL  L+TLWG
Sbjct: 749  RKLQNLQTLDLKHTYISTLPSSIWKMQHLRHLLLSESYRSRFTLQPRV-CSLIALQTLWG 807

Query: 232  LSIGKKSPPLNWLENLSDLKNLGLICNI---------ASLGKITNLIQGLTSLESLRLRS 282
            L + +K+     L+ L +++ LGL C +         + L  + N +  L  L +LRL+S
Sbjct: 808  LFVDEKTLVKGGLDRLVNVRKLGLACRLMPSQQQTMLSQLEAVANWVLKLKHLHTLRLKS 867

Query: 283  INDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPV 342
             ++   P DL +  L  H  L  +YLLGRL  P  + E P +L   TLS S   EDPM  
Sbjct: 868  DDEENQPWDLDLKPLLAHVNLSSIYLLGRLKNPSIVSEFPRSLSDLTLSGSGQMEDPMLK 927

Query: 343  LGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE 402
            L +L  LK LRL A SY G+ M C +G FPQLRVLKLW L++L+EW +EEGA+ AL  LE
Sbjct: 928  LDKLPNLKILRLLAKSYTGKLMLCPSGSFPQLRVLKLWKLEQLEEWNVEEGALQALRDLE 987

Query: 403  IRNCPKLKM-PTEL 415
            IR+C +LKM P EL
Sbjct: 988  IRSCIRLKMLPKEL 1001

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433948|ref|XP_002267553.1| PREDICTED: putative disease resistance protein At1g59780-like [Vitis vinifera]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 180/430 (41%), Positives = 258/430 (60%), Gaps = 23/430 (5%)

Query: 2    APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSR 61
            APED A++   +L+   M++V + K DG  KTCR+P  L        +       H  +R
Sbjct: 595  APEDVAERYLIKLIAQGMVQVTQKKLDGTVKTCRLPYVLQQEWLAKTQEATFLQYHAKTR 654

Query: 62   SNATSSSSDLCVCRLAEHLDNL-----------SSITPSDKKQFEYLHSYLFFVKRKGGK 110
            S  + S+    + RL +HLDN            ++ + S K  ++ + S+L F  R+G K
Sbjct: 655  SELSPSTG--LIRRLVDHLDNEDVSFGHIHGDENTTSTSLKPHYQDVLSFLSFDAREGSK 712

Query: 111  PAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS 170
            P  + GN L   I+   + LLRVLDLE V++P LP+ +GKL  LRY+GLR TF+  +P S
Sbjct: 713  PGEDVGNFLHECISSSCFLLLRVLDLEHVFRPKLPKQLGKLTRLRYIGLRWTFLQMLPSS 772

Query: 171  LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230
            +  L +L+TLD+KHT I +LP SIWKV+ LRHLYL++ +    + +P V  SLT+L+TLW
Sbjct: 773  ISKLQNLQTLDLKHTYIDTLPSSIWKVQQLRHLYLSESYRSKFMLRPRVG-SLTSLQTLW 831

Query: 231  GLSIGKKSPPLNWLENLSDLKNLGLICNIA---------SLGKITNLIQGLTSLESLRLR 281
            GL + +++P  N L+ L +++ L L C +           L  ++N +  L  L+SLRL+
Sbjct: 832  GLFVDEETPVKNGLDRLVNIRKLSLTCRLTPSQDEAMLQQLEAVSNWVLKLNHLQSLRLK 891

Query: 282  SINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMP 341
            S +    P DL +  L+ H  L  +YLLGRL  P  + E P +L   TLS S L+EDPM 
Sbjct: 892  SDDADNQPWDLDLKPLSGHANLSRVYLLGRLKNPSIVSEFPESLTDLTLSGSRLTEDPMQ 951

Query: 342  VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKL 401
             L +L  LK LRL + SY+G++M C  GGFP+LR+LKLW L+ L+EW +EEGA+ AL  L
Sbjct: 952  TLDKLPNLKILRLLSKSYVGKEMLCSLGGFPKLRILKLWKLELLEEWNVEEGALQALHDL 1011

Query: 402  EIRNCPKLKM 411
            EIR+C KLKM
Sbjct: 1012 EIRSCLKLKM 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743817|emb|CBI36700.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 180/442 (40%), Positives = 259/442 (58%), Gaps = 28/442 (6%)

Query: 2    APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSR 61
            APED A++  +  +   MI+V K K +G+ K  R+P +L  Y    A+      +H  +R
Sbjct: 642  APEDVAERCLNLFIAQGMIQVTKKKFNGKVKAIRLPDTLRQYWLSKAQQATFLGVHTNTR 701

Query: 62   SNATSSSSDLCVCRLAEHLD--------------NLSSITPSDKKQFEYLHSYLFFVKRK 107
            S  +  ++   + RL +HLD                +S+TP     +E + S+L F  RK
Sbjct: 702  SEMSLGTNK--IRRLVDHLDREDISFGHIHGDYNTTTSLTPF----YEDVLSFLSFDTRK 755

Query: 108  GGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI 167
              KP  E GN L   ++   + +L VLDLE+V++P LPE +G+L  LRY+GLR TF++ I
Sbjct: 756  ESKPGEEVGNFLHRCVSRGCFLVLLVLDLENVFRPKLPEAVGELTRLRYLGLRSTFLEII 815

Query: 168  PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
            P SL  L +++TLDMKHT+I++LP SIWK++ LRHLYL++ +    + +     SLT L+
Sbjct: 816  PSSLSKLQNVQTLDMKHTSISTLPNSIWKLQKLRHLYLSESYRSKLMLRHGTN-SLTTLQ 874

Query: 228  TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA------SLGKITNLIQGLTSLESLRLR 281
            TL GL I +++   + L+ L D+K LGL  +        SL  + + I  L  L SLRL+
Sbjct: 875  TLCGLFIDEETLVRDCLDRLLDIKKLGLTMSSKQEAVSLSLQAVADWISKLNQLHSLRLK 934

Query: 282  SINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMP 341
            SI+    P DL +  L  H  L  +YLLGRL  P  + + P +L   TLS S L+EDPM 
Sbjct: 935  SIDKSNQPWDLELKPLVGHVNLSCIYLLGRLRNPSIISQFPYSLIDLTLSGSGLAEDPMQ 994

Query: 342  VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKL 401
             L +L  L++L+LFA SY+G+ M C  GGFPQLR LKLW L++L+EW +++GA+  L  L
Sbjct: 995  SLDKLPNLRSLKLFAKSYLGKNMLCSLGGFPQLRALKLWKLEQLEEWNVDKGALQDLRDL 1054

Query: 402  EIRNCPKLKM-PTELTKLSNLK 422
            EIR C  LKM P EL   + LK
Sbjct: 1055 EIRFCRSLKMLPVELLHRTLLK 1076

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781605|emb|CAN64831.1| hypothetical protein VITISV_025759 [Vitis vinifera]

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 180/442 (40%), Positives = 259/442 (58%), Gaps = 28/442 (6%)

Query: 2   APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSR 61
           APED A++  +  +   MI+V K K +G+ K  R+P +L  Y    A+      +H  +R
Sbjct: 322 APEDVAERCLNLFIAQGMIQVTKKKFNGKVKAIRLPDTLRQYWLSKAQQATFLGVHTNTR 381

Query: 62  SNATSSSSDLCVCRLAEHLD--------------NLSSITPSDKKQFEYLHSYLFFVKRK 107
           S  +  ++   + RL +HLD                +S+TP     +E + S+L F  RK
Sbjct: 382 SEMSLGTNK--IRRLVDHLDREDISFGHIHGDYNTTTSLTPF----YEDVLSFLSFDTRK 435

Query: 108 GGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI 167
             KP  E GN L   ++   + +L VLDLE+V++P LPE +G+L  LRY+GLR TF++ I
Sbjct: 436 ESKPGEEVGNFLHRCVSRGCFLVLLVLDLENVFRPKLPEAVGELTRLRYLGLRSTFLEII 495

Query: 168 PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
           P SL  L +++TLDMKHT+I++LP SIWK++ LRHLYL++ +    + +     SLT L+
Sbjct: 496 PSSLSKLQNVQTLDMKHTSISTLPNSIWKLQKLRHLYLSESYRSKLMLRHGTN-SLTTLQ 554

Query: 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA------SLGKITNLIQGLTSLESLRLR 281
           TL GL I +++   + L+ L D+K LGL  +        SL  + + I  L  L SLRL+
Sbjct: 555 TLCGLFIDEETLVRDCLDRLLDIKKLGLTMSSKQEAVSLSLQAVADWISKLNQLHSLRLK 614

Query: 282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMP 341
           SI+    P DL +  L  H  L  +YLLGRL  P  + + P +L   TLS S L+EDPM 
Sbjct: 615 SIDKSNQPWDLELKPLVGHVNLSCIYLLGRLRNPSIISQFPYSLIDLTLSGSGLAEDPMQ 674

Query: 342 VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKL 401
            L +L  L++L+LFA SY+G+ M C  GGFPQLR LKLW L++L+EW +++GA+  L  L
Sbjct: 675 SLDKLPNLRSLKLFAKSYLGKNMLCSLGGFPQLRALKLWKLEQLEEWNVDKGALQDLRDL 734

Query: 402 EIRNCPKLKM-PTELTKLSNLK 422
           EIR C  LKM P EL   + LK
Sbjct: 735 EIRFCRSLKMLPVELLHRTLLK 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856113|emb|CAN82439.1| hypothetical protein VITISV_006121 [Vitis vinifera]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 183/439 (41%), Positives = 254/439 (57%), Gaps = 22/439 (5%)

Query: 2    APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSR 61
            APED A++   +L+   M++V K K +G  KTC +PS+L  Y    A+      IH  + 
Sbjct: 782  APEDVAERCLIKLIAEGMVQVTKKKRNGNIKTCCLPSALRQYWLSKAQETTFLQIHMETT 841

Query: 62   SNATSSSSDLCVCRLAEHLDNLSSIT-----------PSDKKQ--FEYLHSYLFFVKRKG 108
            S+ + S+    + RLA+HLD    +T            S   Q  ++ + S+L F  R+G
Sbjct: 842  SHLSPSTG--MISRLADHLDK-EDVTFGHIHGCHDHMASSHLQPLYQQVISFLSFDTREG 898

Query: 109  GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP 168
             KP  + GN L   I+ R    LRVLDLE+V+KP LPE +GKL  LRY+GLR TF+D +P
Sbjct: 899  SKPGEDMGNFLHRCISGRCLLQLRVLDLENVFKPKLPEALGKLNRLRYLGLRSTFLDMLP 958

Query: 169  KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND-IHLQMSVQKPFVKPSLTNLR 227
              +  LHSL+ LD+KHTNIT+LP  +W ++ LR LYLN+  H ++  Q      S + L+
Sbjct: 959  SFIKKLHSLQVLDVKHTNITTLPSPVWNLQQLRILYLNERCHSKLMPQPQ--AGSFSTLQ 1016

Query: 228  TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK--ITNLIQGLTSLESLRLRSIND 285
             L GL + +++P  + L+   +L+ LGL C + S  +  +   +  +  L SLRL SI++
Sbjct: 1017 VLVGLLVDEETPVKDGLDRFVNLRKLGLTCRLLSSQQEAMVEWVLKMNRLRSLRLESIDE 1076

Query: 286  FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQ 345
                 DL +  L  H  L  LYLLGRL  P  +  LP +L   TLS S L +DPM  L +
Sbjct: 1077 QNQVGDLDLKPLTGHVNLSCLYLLGRLVNPSIVPALPHSLIDITLSGSELKDDPMQTLDK 1136

Query: 346  LRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN 405
            L  LK L L A+SY G+ M C  GGF QLRVLKLW L++L+EW +EEGA+ AL  LEIR 
Sbjct: 1137 LPNLKILSLLANSYTGKNMHCSFGGFSQLRVLKLWKLEQLEEWNVEEGALQALRDLEIRG 1196

Query: 406  CPKLKM-PTELTKLSNLKE 423
            C KL+M P  L   + LKE
Sbjct: 1197 CMKLEMLPEALHHRALLKE 1215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081340|emb|CBI17686.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 178/429 (41%), Positives = 248/429 (57%), Gaps = 21/429 (4%)

Query: 2    APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSR 61
            APED A++   +L+   M++V K K +G  KTC +PS+L  Y    A+      IH  + 
Sbjct: 744  APEDVAERCLIKLIAEGMVQVTKKKRNGNIKTCCLPSALRQYWLSKAQETTFLQIHMETT 803

Query: 62   SNATSSSSDLCVCRLAEHLDNLSSIT-----------PSDKKQ--FEYLHSYLFFVKRKG 108
            S+ + S+    + RLA+HLD    +T            S   Q  ++ + S+L F  R+G
Sbjct: 804  SHLSPSTG--MISRLADHLDK-EDVTFGHIHGCHDHMASSHLQPLYQQVISFLSFDTREG 860

Query: 109  GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP 168
             KP  + GN L   I+ R    LRVLDLE+V+KP LPE +GKL  LRY+GLR TF+D +P
Sbjct: 861  SKPGEDMGNFLHRCISGRCLLQLRVLDLENVFKPKLPEALGKLNRLRYLGLRSTFLDMLP 920

Query: 169  KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND-IHLQMSVQKPFVKPSLTNLR 227
              +  LHSL+ LD+KHTNIT+LP  +W ++ LR  YLN+  H ++  Q      S + L+
Sbjct: 921  SFIKKLHSLQVLDVKHTNITTLPSPVWNLQQLRISYLNERCHSKLMPQPQ--AGSFSTLQ 978

Query: 228  TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK--ITNLIQGLTSLESLRLRSIND 285
             L GL + +++P  + L+   +L+ LGL C + S  +  +   +  +  L SLRL SI++
Sbjct: 979  VLVGLLVDEETPVKDGLDRFVNLRKLGLTCRLLSSQQEAMVEWVLKMNRLRSLRLESIDE 1038

Query: 286  FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQ 345
                 DL +  L  H  L  LYLLGRL  P  +  LP +L   TLS S L +DPM  L +
Sbjct: 1039 QNQVGDLDLKPLTGHVNLSCLYLLGRLVNPSIVPALPHSLIDITLSGSELKDDPMQTLDK 1098

Query: 346  LRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN 405
            L  LK L L A+SY G+ M C  GGF QLRVLKLW L++L+EW +EEGA+ AL  LEIR 
Sbjct: 1099 LPNLKILSLLANSYTGKNMHCSFGGFSQLRVLKLWKLEQLEEWNVEEGALQALRDLEIRG 1158

Query: 406  CPKLKMPTE 414
            C KL+M  E
Sbjct: 1159 CMKLEMLPE 1167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.886	0.436	0.291	1.1e-21
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.809	0.394	0.272	2.7e-21
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.640	0.269	0.315	3.1e-20
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.640	0.269	0.315	3.1e-20
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.640	0.278	0.333	6.6e-20
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.640	0.278	0.333	6.6e-20
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.622	0.305	0.292	2.7e-19
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.640	0.311	0.3	3.1e-19
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.613	0.298	0.321	4.8e-19
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.841	0.511	0.264	9.5e-19

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 122/418 (29%), Positives = 186/418 (44%)

Query:     5 DQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDY-LFPDAESGGVFCIHDGSRSN 63
             D       +LV  NM+   +     R +TCR+   + +  LF   E   +  +   S  +
Sbjct:   462 DTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIV---SNHS 518

Query:    64 ATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVI 123
              TS+   L   R    L N +++     K    L S +      G +     G++   V 
Sbjct:   519 PTSNPQTLGASRRFV-LHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRV- 576

Query:   124 AIRGYRLLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLD 181
                  +LLRVLDL    +K   LP  IGKL  LRY+ L+   +  +P SL +L  L  LD
Sbjct:   577 -----KLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLD 631

Query:   182 MKHTNITSL--PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL-SIGKKS 238
             ++ T+ T +  P     ++ LR+L L     +   +K   K  L+NL  L  L +   KS
Sbjct:   632 IR-TDFTDIFVPNVFMGMRELRYLELP----RFMHEK--TKLELSNLEKLEALENFSTKS 684

Query:   239 PPLNWLENLSDLKNLGLICNIA-SLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSL 297
               L  L  +  L+ L +I +   SL  ++  + GL  LE+ ++          +  +  +
Sbjct:   685 SSLEDLRGMVRLRTLVIILSEGTSLQTLSASVCGLRHLENFKIMENAGVNRMGEERM--V 742

Query:   298 NNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAH 357
              +   LK+L L   +P   K+  LP +L +  LS   L EDPMP+L +L ELK L L   
Sbjct:   743 LDFTYLKKLTLSIEMPRLPKIQHLPSHLTVLDLSYCCLEEDPMPILEKLLELKDLSLDYL 802

Query:   358 SYIGEKMTCGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLKMPTEL 415
             S+ G KM C  GGFPQLR              +EEG+M+ L  L I +    ++P  L
Sbjct:   803 SFSGRKMVCSAGGFPQLRKLALDEQEEWEEWIVEEGSMSRLHTLSIWSSTLKELPDGL 860

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 106/389 (27%), Positives = 177/389 (45%)

Query:    54 FC-IHDGSRSNATSSSSDLCVCRLAEHLDNLSSI---TPSDKKQFEYLHS-YLFFVKRKG 108
             FC +HD  R    S + +    ++ +   + S+I   +PS  ++F  +HS   F +    
Sbjct:   489 FCQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINAQSPSRSRRFS-IHSGKAFHILGHR 547

Query:   109 GKP------AGEFGN--LLKMVIAIRGYRLLRVLDLEDV-YKP-VLPETIGKLQLLRYVG 158
               P         F     ++         LLRVLDL  V ++   LP +IG L  LRY+ 
Sbjct:   548 NNPKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSRVKFEGGKLPSSIGGLIHLRYLS 607

Query:   159 LRRTFIDSIPKSLGDLHSLETLDMKHTNITSL--PKSIWKVKTLRHLYLNDIHLQMSVQK 216
             L    +  +P ++ +L  L  L+++  N   +  P  + ++  LR+L L     +M  + 
Sbjct:   608 LYGAVVSHLPSTMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLELRYLSLPQ---EMDDKT 664

Query:   217 PFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLI----CNIASLGKITNLIQGL 272
                   L NL  LW  S    S  +  L  ++ L+NLG+     CN  +L   ++ ++ L
Sbjct:   665 KLELGDLVNLEYLWYFSTQHSS--VTDLLRMTKLRNLGVSLSERCNFETL---SSSLREL 719

Query:   273 TSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSL 332
              +LE L +    +  +   +    L++   LK+L L  R+      H+ PP+L    L  
Sbjct:   720 RNLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVH 779

Query:   333 SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRXXXXXXXXXXXXXTIEE 392
               + EDPMP+L +L  LK++ L   ++IG ++ C  GGFPQL               +EE
Sbjct:   780 CVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGISGESELEEWIVEE 839

Query:   393 GAMTALEKLEIRNCPKLK-MPTELTKLSN 420
             G+M  L  L I +C KLK +P  L  +++
Sbjct:   840 GSMPCLRTLTIHDCEKLKELPDGLKYITS 868

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 95/301 (31%), Positives = 142/301 (47%)

Query:   130 LLRVLDLE--DVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKH--T 185
             LLRVLD+    +    L  +IG+L  LRY+ L+   +  IP SLG+L  L  L++    +
Sbjct:   586 LLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVS 645

Query:   186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
               T +P  + +++ LR+L L      M  +      +L  L TL   S   K+  L  L 
Sbjct:   646 GSTLVPNVLKEMQQLRYLALPK---DMGRKTKLELSNLVKLETLKNFST--KNCSLEDLR 700

Query:   246 NLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
              +  L+ L + +    SL  +   I GL  LESL +  +       +  I  + +   LK
Sbjct:   701 GMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGI--VFDFVYLK 758

Query:   305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
              L L   +P   K    P +L    L    L EDPMP+L +L +LK L L   S+ G++M
Sbjct:   759 TLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEM 818

Query:   365 TCGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK------MPTELTKL 418
              C +GGFPQL+              +EE +M  L  L+IR+C KLK      +P+ LT +
Sbjct:   819 VCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTSI 878

Query:   419 S 419
             S
Sbjct:   879 S 879

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 95/301 (31%), Positives = 142/301 (47%)

Query:   130 LLRVLDLE--DVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKH--T 185
             LLRVLD+    +    L  +IG+L  LRY+ L+   +  IP SLG+L  L  L++    +
Sbjct:   586 LLRVLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVS 645

Query:   186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
               T +P  + +++ LR+L L      M  +      +L  L TL   S   K+  L  L 
Sbjct:   646 GSTLVPNVLKEMQQLRYLALPK---DMGRKTKLELSNLVKLETLKNFST--KNCSLEDLR 700

Query:   246 NLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
              +  L+ L + +    SL  +   I GL  LESL +  +       +  I  + +   LK
Sbjct:   701 GMVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGI--VFDFVYLK 758

Query:   305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
              L L   +P   K    P +L    L    L EDPMP+L +L +LK L L   S+ G++M
Sbjct:   759 TLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEM 818

Query:   365 TCGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK------MPTELTKL 418
              C +GGFPQL+              +EE +M  L  L+IR+C KLK      +P+ LT +
Sbjct:   819 VCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTSI 878

Query:   419 S 419
             S
Sbjct:   879 S 879

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.6e-20, P = 6.6e-20
 Identities = 100/300 (33%), Positives = 137/300 (45%)

Query:   130 LLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDM-KHTN 186
             LLRVLDL +V  K   L   IGKL  LRY+ L    +  IP SLG+L  L  L++     
Sbjct:   579 LLRVLDLIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGR 638

Query:   187 ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS-PPLNWLE 245
              T +P  +  ++ LR+L L      M  +      +L  L TL   S    S   L  + 
Sbjct:   639 STFVPNVLMGMQELRYLALPS---DMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMV 695

Query:   246 NLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE 305
              LS L N+ LI    SL  +   I GL  LE L +          +  I  + +   LK 
Sbjct:   696 RLSTL-NIKLI-EETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGI--VFDFVHLKR 751

Query:   306 LYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365
             L+L   +P        P +L    L    L EDPMP+L +L +LK L L   S+ G+KM 
Sbjct:   752 LWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMV 811

Query:   366 CGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK------MPTELTKLS 419
             C +GGFPQL+              +EE +M  L  L+I+ C KLK      +P+ LT +S
Sbjct:   812 CSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDEHLPSHLTSIS 871

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.6e-20, P = 6.6e-20
 Identities = 100/300 (33%), Positives = 137/300 (45%)

Query:   130 LLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDM-KHTN 186
             LLRVLDL +V  K   L   IGKL  LRY+ L    +  IP SLG+L  L  L++     
Sbjct:   579 LLRVLDLIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGR 638

Query:   187 ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS-PPLNWLE 245
              T +P  +  ++ LR+L L      M  +      +L  L TL   S    S   L  + 
Sbjct:   639 STFVPNVLMGMQELRYLALPS---DMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMV 695

Query:   246 NLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE 305
              LS L N+ LI    SL  +   I GL  LE L +          +  I  + +   LK 
Sbjct:   696 RLSTL-NIKLI-EETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGI--VFDFVHLKR 751

Query:   306 LYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365
             L+L   +P        P +L    L    L EDPMP+L +L +LK L L   S+ G+KM 
Sbjct:   752 LWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMV 811

Query:   366 CGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK------MPTELTKLS 419
             C +GGFPQL+              +EE +M  L  L+I+ C KLK      +P+ LT +S
Sbjct:   812 CSSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDEHLPSHLTSIS 871

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 87/297 (29%), Positives = 145/297 (48%)

Query:   130 LLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI 187
             LLRVLDL  V ++   LP +IG L  LR++ L +  +  +P ++ +L  +  L++ H  I
Sbjct:   569 LLRVLDLSSVKFEGGKLPSSIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNL-HVAI 627

Query:   188 ---TSLPKSIWKVKTLRHLYLN-DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNW 243
                  +P  + ++  LR+L L  D+H +  ++       L NL  LW  S    S  +  
Sbjct:   628 GVPVHVPNVLKEMLELRYLSLPLDMHDKTKLELG----DLVNLEYLWCFSTQHSS--VTD 681

Query:   244 LENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKE 302
             L  ++ L+  G+      +   +++ ++    LE+L        Y+  D     + +   
Sbjct:   682 LLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKTYMV-DYVGEFVLDFIH 740

Query:   303 LKELYL---LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359
             LK+L L   L ++P     H+LPP++    L   ++ EDPMP+L +L  LK++ L   ++
Sbjct:   741 LKKLSLGVHLSKIPDQ---HQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAF 797

Query:   360 IGEKMTCGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK-MPTEL 415
             IG +M C  GGFPQLR              +EEG+M  L  L I +C KL+ +P  L
Sbjct:   798 IGRRMVCSKGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGL 854

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 90/300 (30%), Positives = 147/300 (49%)

Query:   130 LLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI 187
             LLRVLDL  V ++   LP +IG L  LRY+ L    +  +P ++ +L  L  L+++    
Sbjct:   577 LLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDTE 636

Query:   188 TSL--PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
               +  P  + ++  LR+L L    L+M  +       L NL  L+G S    S  +  L 
Sbjct:   637 EPIHVPNVLKEMIQLRYLSLP---LKMDDKTKLELGDLVNLEYLYGFSTQHSS--VTDLL 691

Query:   246 NLSDLKNLGLI----CNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHK 301
              ++ L+ L +     CN  +L   ++ ++ L +LE+L      + Y+   +    L++  
Sbjct:   692 RMTKLRYLAVSLSERCNFETL---SSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFI 748

Query:   302 ELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG 361
              LK+L L  R+      H+ PP+L    L    + EDPMP+L +L  LK++RL   +++G
Sbjct:   749 HLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLG 808

Query:   362 EKMTCGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK-MPTELTKLSN 420
              +M C  GGFPQL               +EEG+M  L  L I +C KLK +P  L  +++
Sbjct:   809 SRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITS 868

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.8e-19, P = 4.8e-19
 Identities = 92/286 (32%), Positives = 132/286 (46%)

Query:   129 RLLRVLDL--EDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK-HT 185
             +LLRVLDL   D     LP  IG L  LRY+ L+   +  +P SLG+L  L  L++   T
Sbjct:   584 KLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDT 643

Query:   186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE 245
                 +P    ++  LR+L L  +H+    +      +L  L TL   S    S     L 
Sbjct:   644 EFIFVPDVFMRMHELRYLKL-PLHMHKKTRLSL--RNLVKLETLVYFSTWHSSS--KDLC 698

Query:   246 NLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
              ++ L  L + +  + S   ++  I GL +LE L +   +   +  +   G + +   LK
Sbjct:   699 GMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREE---GIVLDFIHLK 755

Query:   305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
              L L   L  P + H  P  L    LS   L EDPMP+L +L  LK + L   SY G +M
Sbjct:   756 HLLL--DLYMPRQQH-FPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRM 812

Query:   365 TCGNGGFPQLRXXXXXXXXXXXXXTIEEGAMTALEKLEIRNCPKLK 410
              C  GGFPQL+              +EEG+M  LE L I +C +LK
Sbjct:   813 VCSGGGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELK 858

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 9.5e-19, P = 9.5e-19
 Identities = 105/397 (26%), Positives = 176/397 (44%)

Query:     4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGVFCIHDGSRSN 63
             +D+ +    +L   NMI + K     R K C++   + +     A+      I   S + 
Sbjct:   342 QDKGEDYLEELARRNMITIDKNYMFLRKKHCQMHDMMREVCLSKAKEENFLEIFKVSTAT 401

Query:    64 ATSSSSDLCVCR-LAEHLDN-LSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKM 121
             +  ++  L   R L+ H  N L S+  +  K+   + S L+F          EF  L   
Sbjct:   402 SAINARSLSKSRRLSVHGGNALPSLGQTINKK---VRSLLYFAFED------EFCILEST 452

Query:   122 VIAIRGYRLLRVLDLEDV-YKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLET 179
                 R   LLRVLDL  V ++   LP +IG L  LR++ L R +I  +P SL +L  L  
Sbjct:   453 TPCFRSLPLLRVLDLSRVKFEGGKLPSSIGDLIHLRFLSLHRAWISHLPSSLRNLKLLLY 512

Query:   180 LDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP 239
             L++    +  +P  + +++ LR+L L    + M  +       L NL +L   S  K + 
Sbjct:   513 LNLGFNGMVHVPNVLKEMQELRYLQLP---MSMHDKTKLELSDLVNLESLMNFST-KYAS 568

Query:   240 PLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND---FYVPSDLAIGS 296
              ++ L +++ L+ L L     S   +++ +  L SLE L L    +    Y   ++ +  
Sbjct:   569 VMDLL-HMTKLRELSLFITDGSSDTLSSSLGQLRSLEVLHLYDRQEPRVAYHGGEIVLNC 627

Query:   297 LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFA 356
             ++  KEL+    + R P     H   P+L    L    + EDP+P+L +L  LK++ L  
Sbjct:   628 IHL-KELELAIHMPRFPDQYLFH---PHLSHIYLWCCSMEEDPIPILERLLHLKSVILTF 683

Query:   357 HSYIGEKMTCGNGGFPQLRXXXXXXXXXXXXXTIEEG 393
              +++G +M C  GGFPQL               +EEG
Sbjct:   684 GAFVGRRMVCSKGGFPQLCFLKLEELEELEEWIVEEG 720

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 17/234 (7%)

Query: 130 LLRVLDLEDVYKPVLPETIGKLQL-LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT 188
            L  LDL++     +P  IG L+  L+ + L    I+S+P  L +L +L+ LD+   +++
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176

Query: 189 SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS 248
            LPK +  +  L +L L+   +   +       S   L  L  LS       L+ L NL 
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS--ALEELD-LSNNSIIELLSSLSNLK 232

Query: 249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL 308
           +L  L L  N   L  +   I  L++LE+L L +     + S   +GSL N   L+EL  
Sbjct: 233 NLSGLELSNN--KLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTN---LRELD- 283

Query: 309 LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362
              L G    + LP    +  L    L+        +L+    L        GE
Sbjct: 284 ---LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 141 KPVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVK 198
           +  +P  I KL+ L+ + L    I  +IP SLG + SLE LD+ + +   S+P+S+ ++ 
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 199 TLRHLYLND 207
           +LR L LN 
Sbjct: 491 SLRILNLNG 499

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 19/227 (8%)

Query: 144 LPETIGKLQLLRYVGL-RRTFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLR 201
           +P  +G+++ L+++ L        IP  +G L SL  LD+ + N+T  +P S+  +K L+
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261
           +L+L     Q  +  P + PS+ +L+ L  L +   S      E +  L+NL ++   ++
Sbjct: 264 YLFL----YQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 262 --LGKITNLIQGLTSLESLRLRSINDFY--VPSDLAIGSLNNHK--ELKELYLLGRLPGP 315
              GKI   +  L  L+ L+L S N F   +P +L  G  NN    +L    L G +P  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWS-NKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEG 375

Query: 316 LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362
           L        L +F+ SL    E P   LG  R L+ +RL  +S+ GE
Sbjct: 376 LCSSGNLFKLILFSNSLE--GEIP-KSLGACRSLRRVRLQDNSFSGE 419

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 73/262 (27%)

Query: 130 LLRVLDLED-VYKPVLPETIGKLQLLRYVGLRRTF-IDSIPKSLGDLHSLETLDMKHTNI 187
            L  LDL + +    +P  IG    L+ + L     +  IP SL +L SLE L +    +
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 188 T-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLEN 246
              +P+ + ++K+L+ +YL                                        N
Sbjct: 201 VGQIPRELGQMKSLKWIYLG-------------------------------------YNN 223

Query: 247 LSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN-DFYVPSDLAIGSLNNHKELKE 305
           LS              G+I   I GLTSL  L L   N    +PS     SL N K L+ 
Sbjct: 224 LS--------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPS-----SLGNLKNLQY 264

Query: 306 LYLL-GRLPGPLKLHELPP------NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHS 358
           L+L   +L GP     +PP       L    LS + LS +   ++ QL+ L+ L LF+++
Sbjct: 265 LFLYQNKLSGP-----IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 359 YIGEKMTCGNGGFPQLRVLKLW 380
           + G K+       P+L+VL+LW
Sbjct: 320 FTG-KIPVALTSLPRLQVLQLW 340

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 154 LRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLND 207
           L+ + L    +  IP  +   L +L+ LD+   N+TS+ P++   + +LR L L+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.85
KOG4341	483	consensus F-box protein containing LRR [General fu	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
PLN03150	623	hypothetical protein; Provisional	98.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
PLN03150	623	hypothetical protein; Provisional	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.59
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.33
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.63
smart00370	26	LRR Leucine-rich repeats, outliers.	95.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.61
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.58
smart00370	26	LRR Leucine-rich repeats, outliers.	93.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.23
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.5
KOG4308	478	consensus LRR-containing protein [Function unknown	88.41
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.62

>PLN03210 Resistant to P

Probab=99.97  E-value=5.2e-31  Score=280.46  Aligned_cols=386  Identities=18%  Similarity=0.174  Sum_probs=254.5

Q ss_pred             HHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccccCC-------eEEEecCCCCcccCCCCCCceeEEEEecCC
Q 013456           10 DFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGG-------VFCIHDGSRSNATSSSSDLCVCRLAEHLDN   82 (442)
Q Consensus        10 ~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   82 (442)
                      .++.|+++|||+...    +   .++|||++||||+++++++.       +.....+.........++.+++++++....
T Consensus       471 ~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~  543 (1153)
T PLN03210        471 GLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE  543 (1153)
T ss_pred             ChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence            488999999998642    2   47999999999999987763       332222222222233467789999887655


Q ss_pred             CC--CCCCCCccccccceeEEEEeecCC-------CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccc
Q 013456           83 LS--SITPSDKKQFEYLHSYLFFVKRKG-------GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQL  153 (442)
Q Consensus        83 ~~--~~~~~~~~~~~~lr~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~  153 (442)
                      ..  ......+..+.+|+.|.+..+...       ..|.+ +..+         .+.||.|.+.++.+..+|..+ .+.+
T Consensus       544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~l---------p~~Lr~L~~~~~~l~~lP~~f-~~~~  612 (1153)
T PLN03210        544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYL---------PPKLRLLRWDKYPLRCMPSNF-RPEN  612 (1153)
T ss_pred             cceeeecHHHHhcCccccEEEEecccccccccceeecCcc-hhhc---------CcccEEEEecCCCCCCCCCcC-CccC
Confidence            43  234566788999999988765311       12221 1111         246899999988888888877 5688


Q ss_pred             cceecccccccccCCccccccCCCcEEeecCcc-ccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456          154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTN-ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL  232 (442)
Q Consensus       154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~  232 (442)
                      |++|++.++.+..+|..+..+++|++|+|++|. +..+|. +..+++|+.|++++|.....+|.  .++++++|+.|++.
T Consensus       613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~  689 (1153)
T PLN03210        613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS--SIQYLNKLEDLDMS  689 (1153)
T ss_pred             CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch--hhhccCCCCEEeCC
Confidence            999999998888888888888999999998874 567764 77888999999988876666654  48888889999888


Q ss_pred             ccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456          233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       233 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  312 (442)
                      +|.....+|..+ .+++|+.|++++|... ..+|.   ...+|+.|++++|.+...|...      .+++|++|.+.+..
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L-~~~p~---~~~nL~~L~L~~n~i~~lP~~~------~l~~L~~L~l~~~~  758 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRL-KSFPD---ISTNISWLDLDETAIEEFPSNL------RLENLDELILCEMK  758 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCc-ccccc---ccCCcCeeecCCCccccccccc------cccccccccccccc
Confidence            887766666654 6788888888877432 44443   2357888888887765555432      34556666554421


Q ss_pred             ---------CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456          313 ---------PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       313 ---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (442)
                               +.+......+++|+.|++++|.....+|..++++++|+.|++++|...+..+..  ..+++|+.|++++|.
T Consensus       759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCS  836 (1153)
T ss_pred             hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCC
Confidence                     001112223467777777777665566777777777888887777554443332  256777777777766


Q ss_pred             CcceEE--------------------eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccc
Q 013456          384 ELKEWT--------------------IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKK  429 (442)
Q Consensus       384 ~l~~~~--------------------~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n  429 (442)
                      .+..++                    ...+.+++|+.|++.+|..++. |..+..+++|+.+++++|
T Consensus       837 ~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        837 RLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            554433                    2233445555555555554443 444455555555555555

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=9.5e-31  Score=278.03  Aligned_cols=298  Identities=25%  Similarity=0.249  Sum_probs=172.4

Q ss_pred             cCceeEEEecCCCCCC-CChhhhhcccccceecccccccc-cCCccccccCCCcEEeecCcccc-ccchhhhccccccee
Q 013456          127 GYRLLRVLDLEDVYKP-VLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHL  203 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L  203 (442)
                      .+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            3555666666655443 45666666777777777666653 45666666777777777766665 566666667777777


Q ss_pred             eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456          204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI  283 (442)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  283 (442)
                      ++++|.+.+..|.  .++++++|++|++.++...+..+..++.+++|+.|+++.|... +.+|..+..+++|+.|++++|
T Consensus       218 ~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        218 YLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-GPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             ECcCCccCCcCCh--hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee-ccCchhHhhccCcCEEECcCC
Confidence            7766666554443  3666667777766666655556666666666777766666544 445556666666666666666


Q ss_pred             ccccCCccccccccCCcCCCceEEeccccC---CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456          284 NDFYVPSDLAIGSLNNHKELKELYLLGRLP---GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI  360 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  360 (442)
                      ........    .+..+++|+.|++.++..   .+..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.
T Consensus       295 ~l~~~~p~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        295 SLSGEIPE----LVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             eeccCCCh----hHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence            54332111    234456666666655521   12233344 56666666666666555656666666666666666554


Q ss_pred             Cccccc-----------------------CCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCC
Q 013456          361 GEKMTC-----------------------GNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELT  416 (442)
Q Consensus       361 ~~~~~~-----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~  416 (442)
                      +..+..                       .+..+++|+.|++++|.....++.....+++|+.|++++|..... |..+.
T Consensus       370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence            332221                       133344555555555443333333444555666666666655544 44455


Q ss_pred             CCCCCcEEEecccccc
Q 013456          417 KLSNLKELTLVKKVLK  432 (442)
Q Consensus       417 ~l~~L~~L~l~~n~l~  432 (442)
                      .+++|+.|++++|++.
T Consensus       450 ~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        450 DMPSLQMLSLARNKFF  465 (968)
T ss_pred             cCCCCcEEECcCceee
Confidence            5666666666666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.97  E-value=9.2e-31  Score=265.10  Aligned_cols=364  Identities=25%  Similarity=0.254  Sum_probs=237.7

Q ss_pred             CChHHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccc-----cCCeEEEecCCCCcccCCCCCCceeE
Q 013456            1 MAPEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAE-----SGGVFCIHDGSRSNATSSSSDLCVCR   75 (442)
Q Consensus         1 ~~~ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (442)
                      +++||+|+.|+++||+++|++..+..  ++...|+|||+|||||.++|+     +++.+...+.+............+||
T Consensus       450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr  527 (889)
T KOG4658|consen  450 ETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR  527 (889)
T ss_pred             cchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE
Confidence            46799999999999999999987643  677899999999999999999     66644443322222334456778999


Q ss_pred             EEEecCCCCCCCCCCccccccceeEEEEeecC--CCCCCchhhhHHHHHHhhhcCceeEEEecCCC-CCCCChhhhhccc
Q 013456           76 LAEHLDNLSSITPSDKKQFEYLHSYLFFVKRK--GGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDV-YKPVLPETIGKLQ  152 (442)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~l~~l~  152 (442)
                      +++..+.......  ....++++||++..+..  ..++.+          .|..+|.||||||++| ....+|.+++++.
T Consensus       528 ~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~----------ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  528 MSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGE----------FFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             EEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHH----------HHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            9988877643332  23455899999998853  333322          2466999999999976 6789999999999


Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCccc-cccchhhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI-TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG  231 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~  231 (442)
                      |||||+++++.+..+|.++++|+.|++|++..+.- ..+|.....|.+|++|.+.........-   .++.+.+|+.|..
T Consensus       596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~---~l~el~~Le~L~~  672 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL---LLKELENLEHLEN  672 (889)
T ss_pred             hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh---hHHhhhcccchhh
Confidence            99999999999999999999999999999999854 4556666679999999997754211111   2344444444443


Q ss_pred             cccCCCC-CchhhhccccCcceeeEEee--ccccchhHHhhcCCcccccceeeccccccCCcccc-ccccC-CcCCCceE
Q 013456          232 LSIGKKS-PPLNWLENLSDLKNLGLICN--IASLGKITNLIQGLTSLESLRLRSINDFYVPSDLA-IGSLN-NHKELKEL  306 (442)
Q Consensus       232 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~-~~~~L~~l  306 (442)
                      ....... .....+..+..|..+...-.  .......+..+..+.+|+.|.+.++.......... ..... .++++..+
T Consensus       673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             heeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence            3332221 12233444444443222111  01224456667788899999998887654322110 00011 13344444


Q ss_pred             Eecccc-CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456          307 YLLGRL-PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV  381 (442)
Q Consensus       307 ~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  381 (442)
                      .+..+. +.......++++|+.|.+..|..-.++.+....+..+..+.+..+.+.+.......++|+++..+.+..
T Consensus       753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             HhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence            443332 222333456789999999988877777777777777776555555554432233345555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.4e-29  Score=269.04  Aligned_cols=307  Identities=24%  Similarity=0.228  Sum_probs=224.8

Q ss_pred             hhcCceeEEEecCCCCC-CCChhhhhcccccceecccccccc-cCCccccccCCCcEEeecCcccc-ccchhhhcccccc
Q 013456          125 IRGYRLLRVLDLEDVYK-PVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLR  201 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~-~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~  201 (442)
                      +..+++|++|++++|.+ ..+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            45688899999998765 467888888999999999888765 56888888889999999888887 7888888888888


Q ss_pred             eeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceee
Q 013456          202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLR  281 (442)
Q Consensus       202 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  281 (442)
                      +|++++|.+.+..|.  .++++++|+.|++..+...+..+..+..+++|+.|++++|... ..+|..+..+++|+.|+++
T Consensus       240 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        240 HLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             EEECcCceeccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCcEEECC
Confidence            888888887765554  4788888888888877776667777777888888888777654 4566666777777777777


Q ss_pred             ccccccCCccc--------------------cccccCCcCCCceEEeccccC---CCcccccCCCceeEEEEeccCCCCC
Q 013456          282 SINDFYVPSDL--------------------AIGSLNNHKELKELYLLGRLP---GPLKLHELPPNLRIFTLSLSYLSED  338 (442)
Q Consensus       282 ~~~~~~~~~~~--------------------~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~  338 (442)
                      +|.........                    ....+..+++|+.++++++..   .+.++... ++|+.|+++.|.+.+.
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~  395 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGE  395 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEeccc
Confidence            66554321110                    001122344445555544321   12222233 5666777777776667


Q ss_pred             CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCC
Q 013456          339 PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTK  417 (442)
Q Consensus       339 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~  417 (442)
                      .+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|.....++.....+++|+.|++++|..... |.. ..
T Consensus       396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~  473 (968)
T PLN00113        396 IPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FG  473 (968)
T ss_pred             CCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cc
Confidence            7777888999999999999887655543 78899999999999876666666666899999999999998876 554 45


Q ss_pred             CCCCcEEEeccccccccCCC
Q 013456          418 LSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       418 l~~L~~L~l~~n~l~~~p~~  437 (442)
                      .++|+.|++++|++....+.
T Consensus       474 ~~~L~~L~ls~n~l~~~~~~  493 (968)
T PLN00113        474 SKRLENLDLSRNQFSGAVPR  493 (968)
T ss_pred             cccceEEECcCCccCCccCh
Confidence            68999999999999755443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=5.2e-29  Score=231.05  Aligned_cols=302  Identities=22%  Similarity=0.240  Sum_probs=235.7

Q ss_pred             hhcCceeEEEecCCCCC--CCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhh-cccccc
Q 013456          125 IRGYRLLRVLDLEDVYK--PVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLR  201 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~--~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~  201 (442)
                      ++.++.||.+++..|.+  ..+|..+..+..|..|+|++|++.+.|..+..-+++-+|+|++|+|..+|..+. +|..|-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            45677777777775543  446777777777888888888777777777777777888888887777776543 677777


Q ss_pred             eeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceee
Q 013456          202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLR  281 (442)
Q Consensus       202 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  281 (442)
                      .||+++|.+.. .|.  .+..+.+|++|.+.++.....-...+..+++|+.|.++++.-+...+|.++..+.+|..++++
T Consensus       154 fLDLS~NrLe~-LPP--Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  154 FLDLSNNRLEM-LPP--QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             hhccccchhhh-cCH--HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            78888777653 332  477777788887777776666566667777777777777766667777777788888888888


Q ss_pred             ccccccCCccccccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456          282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY  359 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  359 (442)
                      .|+....|..     +-.+++|+.|+++|+...  ......+ .+|++|+++.|.++ .+|..+++++.|+.|.+.+|.+
T Consensus       231 ~N~Lp~vPec-----ly~l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  231 ENNLPIVPEC-----LYKLRNLRRLNLSGNKITELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             ccCCCcchHH-----HhhhhhhheeccCcCceeeeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence            8777666554     446777888888877422  2223444 78999999999998 7899999999999999999998


Q ss_pred             cCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456          360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      .-+..+++++.+.+|+.+...+ +.++-.|.....|+.|+.|.+..|...++|+++.-++.|+.|++..|+--..|+-
T Consensus       304 ~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            8777888899999999999987 4777888888899999999999999999999999999999999999977677664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=3.2e-27  Score=217.45  Aligned_cols=333  Identities=18%  Similarity=0.142  Sum_probs=198.4

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC-Cccccc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGD  173 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~  173 (442)
                      +.-++|.++++....+....          |.++++|+.+++.+|.++.+|.......||+.|+|.+|.|.++ .+++..
T Consensus        78 ~~t~~LdlsnNkl~~id~~~----------f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~  147 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEF----------FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA  147 (873)
T ss_pred             cceeeeeccccccccCcHHH----------HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHh
Confidence            45556767666554443221          2346677777777776666666555566666666666666655 334566


Q ss_pred             cCCCcEEeecCccccccchh-hhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcce
Q 013456          174 LHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKN  252 (442)
Q Consensus       174 l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~  252 (442)
                      ++.|+.|||+.|.|+++|.. +-.=.++++|++++|.+.....-  .+..+.+|.+|.+..++.....+..|..+++|+.
T Consensus       148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES  225 (873)
T ss_pred             HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhh
Confidence            66666666666666655443 22235566666666665533222  3555556666666665555555555556666666


Q ss_pred             eeEEeeccccchhHHhhcCCcccccceeeccccccCCcccc--------------------ccccCCcCCCceEEecccc
Q 013456          253 LGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLA--------------------IGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       253 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~~~~~~~~L~~l~l~~~~  312 (442)
                      |++..|.+... .--.|.++++|+.|.+..|.+....+..-                    -..+-.++.|+.|+++.+.
T Consensus       226 LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  226 LDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             hhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence            66666544311 12234445555555555544443322210                    0123344555555555443


Q ss_pred             CCCccc--ccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-
Q 013456          313 PGPLKL--HELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-  389 (442)
Q Consensus       313 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-  389 (442)
                      .....+  -.++++|+.|+|++|+++.-.+..|..+..|++|+|+.|.+.. .....+.++.+|+.|+|+.|...-.+. 
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            211111  1234677777777777776666667777777777777776642 233346678888888888764322222 


Q ss_pred             --eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCCCC
Q 013456          390 --IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAWPR  441 (442)
Q Consensus       390 --~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~~~  441 (442)
                        ..+.++|+|++|.+.+|++-.+ -..+..+++|++|+|.+|.|.+|-+++|+|
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence              2234689999999999988777 556788999999999999999998888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-27  Score=219.68  Aligned_cols=304  Identities=21%  Similarity=0.164  Sum_probs=221.3

Q ss_pred             ceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccc-hhhhcccccceeeec
Q 013456          129 RLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLN  206 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~  206 (442)
                      ..-+.|++++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+|.|+++. ..+..++.|+.||++
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            5578899999987766 55789999999999999999999987778888999999999999664 468889999999999


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      .|.+. .++.+ .+..-.++++|++..++........|.++.+|..|.++.|.++ .-.+..|.++++|+.|++..|.+.
T Consensus       158 rN~is-~i~~~-sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  158 RNLIS-EIPKP-SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hchhh-cccCC-CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence            99887 45554 5667788999999999988877788999999999999999776 555677888999999999988764


Q ss_pred             cCCccccccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456          287 YVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM  364 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  364 (442)
                      -.    .+..|..+++|+.+.+..+...  .......+.++++|+|+.|++...-..++-++..|+.|+++.|.+.....
T Consensus       235 iv----e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  235 IV----EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             ee----hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            32    1334666777777777544211  11111113566666666666655445555666666666666665543222


Q ss_pred             ccCCCCCCcccEEEecccCC-----------------------cceE-EeCCCccccccEEEeccCCCCCC----CccCC
Q 013456          365 TCGNGGFPQLRVLKLWVLKE-----------------------LKEW-TIEEGAMTALEKLEIRNCPKLKM----PTELT  416 (442)
Q Consensus       365 ~~~~~~~~~L~~L~l~~~~~-----------------------l~~~-~~~~~~~~~L~~L~l~~c~~l~~----p~~l~  416 (442)
                      . .+.-.++|++|+|++|..                       +..+ ...+..+.+|++|++++|.+...    ...+.
T Consensus       311 d-~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  311 D-SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             c-hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            2 245555666666665421                       1111 12334578999999998876542    44566


Q ss_pred             CCCCCcEEEeccccccccCCCCCC
Q 013456          417 KLSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       417 ~l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      .+++|+.|.+.||+|+.||.-+|.
T Consensus       390 gl~~LrkL~l~gNqlk~I~krAfs  413 (873)
T KOG4194|consen  390 GLPSLRKLRLTGNQLKSIPKRAFS  413 (873)
T ss_pred             cchhhhheeecCceeeecchhhhc
Confidence            799999999999999999987664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=1.7e-26  Score=214.39  Aligned_cols=298  Identities=24%  Similarity=0.247  Sum_probs=203.1

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc--ccchhhhccccccee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHL  203 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L  203 (442)
                      ..|++++.|.|....+..+|+.++.|.+|++|++++|++..+-..+..|+.|+.++++.|+++  .+|..|.++..|..|
T Consensus        29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l  108 (1255)
T KOG0444|consen   29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL  108 (1255)
T ss_pred             HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence            447778888888888888888888888888888888877777666777888888888888776  678888888888888


Q ss_pred             eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456          204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI  283 (442)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  283 (442)
                      |+++|++. ..|.  .+..-+++-.|++.++........-+.++..|-.|++++|..  +.+|+.+..+.+|+.|.+++|
T Consensus       109 DLShNqL~-EvP~--~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  109 DLSHNQLR-EVPT--NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             ecchhhhh-hcch--hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCC
Confidence            88888765 3333  467777777777777776655555566777777888887743  677777788888888888877


Q ss_pred             ccccCCccccccccCCcCCCceEEecccc----CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456          284 NDFYVPSDLAIGSLNNHKELKELYLLGRL----PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY  359 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  359 (442)
                      ...-    +.+..+..+..|+.|+++++.    ..|..+..+ .+|..++++.|.++ ..|..+-.+++|+.|+|++|.+
T Consensus       184 PL~h----fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  184 PLNH----FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hhhH----HHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence            5432    122334556677777777653    124445555 67788888888776 5677777888888888888877


Q ss_pred             cCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCC--CCccCCCCCCCcEEEeccccccccCCC
Q 013456          360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK--MPTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--~p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      +...  ...+...+|++|+++.| .+..+|.....+++|+.|.+.+|...-  +|.+++.+.+|+.+..++|.++.+|++
T Consensus       258 teL~--~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg  334 (1255)
T KOG0444|consen  258 TELN--MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG  334 (1255)
T ss_pred             eeee--ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence            6422  22445667777777763 455566555556666666665554331  255555555555555555555555543

>PLN03210 Resistant to P

Probab=99.87  E-value=1.5e-21  Score=208.34  Aligned_cols=296  Identities=20%  Similarity=0.150  Sum_probs=219.6

Q ss_pred             hhhcCceeEEEecCCCCC-------CCChhhhhccc-ccceecccccccccCCccccccCCCcEEeecCccccccchhhh
Q 013456          124 AIRGYRLLRVLDLEDVYK-------PVLPETIGKLQ-LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW  195 (442)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~-------~~l~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~  195 (442)
                      +|.+|++|+.|.+.++..       ..+|..+..++ +||+|.+.++.+..+|..+ ...+|+.|++.+|.+..+|.++.
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~  631 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH  631 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence            346799999999975432       24677776664 6999999999999999887 57999999999999999999999


Q ss_pred             cccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccc
Q 013456          196 KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSL  275 (442)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  275 (442)
                      .+++|+.|+++++.....+|   .++.+++|+.|++.+|.....++..++.+++|+.|++++|... ..+|..+ ++++|
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL  706 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSL  706 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCC
Confidence            99999999999987665665   3788999999999999888888999999999999999987543 5666654 68899


Q ss_pred             ccceeeccccccCCccccccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCC-------CCcccccCC
Q 013456          276 ESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSE-------DPMPVLGQL  346 (442)
Q Consensus       276 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~l  346 (442)
                      +.|++++|......+.       ...+|+.|++.++...  +.. ..+ ++|+.|.+..+....       ..+......
T Consensus       707 ~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~lP~~-~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEEFPSN-LRL-ENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CEEeCCCCCCcccccc-------ccCCcCeeecCCCcccccccc-ccc-cccccccccccchhhccccccccchhhhhcc
Confidence            9999999865432221       2467899999877421  111 123 678888887643211       111123345


Q ss_pred             CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC---------------
Q 013456          347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM---------------  411 (442)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~---------------  411 (442)
                      ++|+.|++++|......+.. ++.+++|+.|++++|..++.+|... .+++|+.|++++|..++.               
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             ccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            79999999999876665554 8899999999999999888887554 577888888888766543               


Q ss_pred             ------CccCCCCCCCcEEEeccc-cccccCC
Q 013456          412 ------PTELTKLSNLKELTLVKK-VLKMKPE  436 (442)
Q Consensus       412 ------p~~l~~l~~L~~L~l~~n-~l~~~p~  436 (442)
                            |..+..+++|+.|++++| ++..+|.
T Consensus       856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence                  334445555555555553 4455544

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=1.7e-24  Score=191.16  Aligned_cols=95  Identities=22%  Similarity=0.257  Sum_probs=72.9

Q ss_pred             CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-----------------------eC-CCc
Q 013456          339 PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-----------------------IE-EGA  394 (442)
Q Consensus       339 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-----------------------~~-~~~  394 (442)
                      ++..++.+++|..|++++|-+-+ .|.. ++.+..|+.|+++.+ .+..+|                       .. .+.
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e-~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n  503 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLND-LPEE-MGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN  503 (565)
T ss_pred             chHHHHhhhcceeeecccchhhh-cchh-hhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence            34456778889999998876643 3333 677777889988875 333222                       22 357


Q ss_pred             cccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456          395 MTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       395 ~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      |.+|..|++.+|....+|+++++|++|++|+++||++. .|.+
T Consensus       504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             hhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence            88999999999999999999999999999999999998 6653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=4.8e-23  Score=182.13  Aligned_cols=323  Identities=24%  Similarity=0.229  Sum_probs=219.8

Q ss_pred             cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456           92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL  171 (442)
Q Consensus        92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~  171 (442)
                      ..+..+.++.+..+.....|.+           ..++..++.++.+++.+..+|+.++.+..|+.|+.++|.+..+|+++
T Consensus        65 ~nL~~l~vl~~~~n~l~~lp~a-----------ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i  133 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQLPAA-----------IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI  133 (565)
T ss_pred             hcccceeEEEeccchhhhCCHH-----------HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence            3455555555555555455432           23456677777777777777777777777777777777777777777


Q ss_pred             cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456          172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK  251 (442)
Q Consensus       172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~  251 (442)
                      +.+..|+.++..+|++..+|.+++.+.+|..+++.+|.+....|   ..-+++.|++++...+. .+.+|+.++.+.+|.
T Consensus       134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~---~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~  209 (565)
T KOG0472|consen  134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPE---NHIAMKRLKHLDCNSNL-LETLPPELGGLESLE  209 (565)
T ss_pred             HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCH---HHHHHHHHHhcccchhh-hhcCChhhcchhhhH
Confidence            77777777777777777778777777778778777777653322   23347777777755443 345677788888888


Q ss_pred             eeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc--CCCcccccCCCceeEEE
Q 013456          252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL--PGPLKLHELPPNLRIFT  329 (442)
Q Consensus       252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~L~  329 (442)
                      .|++..|.+  ..+| .|.+++.|..+.++.|.+...+.+.    ...++.+..|++..+.  ..|..+..+ .+|+.||
T Consensus       210 ~LyL~~Nki--~~lP-ef~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLD  281 (565)
T KOG0472|consen  210 LLYLRRNKI--RFLP-EFPGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLD  281 (565)
T ss_pred             HHHhhhccc--ccCC-CCCccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccccccccCchHHHHh-hhhhhhc
Confidence            888877754  3444 5777788888887777665555442    4467788888887763  224555555 7899999


Q ss_pred             EeccCCCCCCcccccCCCCCcEEEeCcccccCc-----------------------ccccC-----------------CC
Q 013456          330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE-----------------------KMTCG-----------------NG  369 (442)
Q Consensus       330 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------------~~~~~-----------------~~  369 (442)
                      +++|.++ ..|..++++ +|+.|.+.||.+...                       .+...                 ..
T Consensus       282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~  359 (565)
T KOG0472|consen  282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY  359 (565)
T ss_pred             ccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence            9999988 567889999 999999998853210                       00000                 00


Q ss_pred             CCCcccEEEecccCCcceEE--------------------------------------------------eCCCcccccc
Q 013456          370 GFPQLRVLKLWVLKELKEWT--------------------------------------------------IEEGAMTALE  399 (442)
Q Consensus       370 ~~~~L~~L~l~~~~~l~~~~--------------------------------------------------~~~~~~~~L~  399 (442)
                      ...+.+.|++++ ..++.+|                                                  .....+++|.
T Consensus       360 ~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt  438 (565)
T KOG0472|consen  360 AIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT  438 (565)
T ss_pred             hhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence            123455555554 1222111                                                  0113467899


Q ss_pred             EEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCCC
Q 013456          400 KLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       400 ~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      .|++++|..-++|..++.+..|++|+|+.|++..+|.-.+.
T Consensus       439 ~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~  479 (565)
T KOG0472|consen  439 FLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE  479 (565)
T ss_pred             eeecccchhhhcchhhhhhhhhheecccccccccchHHHhh
Confidence            99999998878899999999999999999999999975543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=2.8e-21  Score=187.49  Aligned_cols=106  Identities=25%  Similarity=0.245  Sum_probs=69.1

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEE
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE  402 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  402 (442)
                      +.|+.|.+.+|.+++...+.+-.+++|+.|+|++|.+.. .+...+.+++.|++|.|+|| .++.++.....+++|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHh
Confidence            457777888888887777788888888888888887753 44444777888888888885 5555555444555555555


Q ss_pred             eccCCCCCCCccCCCCCCCcEEEeccccc
Q 013456          403 IRNCPKLKMPTELTKLSNLKELTLVKKVL  431 (442)
Q Consensus       403 l~~c~~l~~p~~l~~l~~L~~L~l~~n~l  431 (442)
                      ..+|.++..| .+..++.|+.+|++.|.|
T Consensus       437 ahsN~l~~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  437 AHSNQLLSFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             hcCCceeech-hhhhcCcceEEecccchh
Confidence            5555444444 444555555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.78  E-value=3.8e-20  Score=179.79  Aligned_cols=287  Identities=26%  Similarity=0.257  Sum_probs=157.3

Q ss_pred             eEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccc
Q 013456          131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHL  210 (442)
Q Consensus       131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~  210 (442)
                      |++||++++.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+|.+..+|..+..+.+|+.|++++|.+
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f  126 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF  126 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666654


Q ss_pred             cccccCCCCCCCCcccc-------------------cccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcC
Q 013456          211 QMSVQKPFVKPSLTNLR-------------------TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQG  271 (442)
Q Consensus       211 ~~~~~~~~~~~~l~~L~-------------------~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~  271 (442)
                      . .+|.  .+..++.++                   .+++..+.....++.++..++.  .|++..|.+.    ...++.
T Consensus       127 ~-~~Pl--~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~  197 (1081)
T KOG0618|consen  127 G-PIPL--VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSN  197 (1081)
T ss_pred             C-CCch--hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhh
Confidence            3 2222  233333333                   3333333334444445555554  5677766442    233445


Q ss_pred             CcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcE
Q 013456          272 LTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKA  351 (442)
Q Consensus       272 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  351 (442)
                      +.+|+.+....|.......        .-++++.|....+........-.|.+|+.++++.+.+. ..|.|++.+++|+.
T Consensus       198 ~~~l~~l~c~rn~ls~l~~--------~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~  268 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEI--------SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEA  268 (1081)
T ss_pred             ccchhhhhhhhcccceEEe--------cCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceE
Confidence            5566666555544332111        12334444443332221112223456666666666665 33466666666666


Q ss_pred             EEeCcccccCc----------------------ccccCCCCCCcccEEEecccCCcceEEe-------------------
Q 013456          352 LRLFAHSYIGE----------------------KMTCGNGGFPQLRVLKLWVLKELKEWTI-------------------  390 (442)
Q Consensus       352 L~l~~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~l~~~~~-------------------  390 (442)
                      +....|.+...                      .+. ..+++.+|++|+|..+. +.+.|.                   
T Consensus       269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  269 LNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             ecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc
Confidence            66655543221                      111 13457777777777642 222211                   


Q ss_pred             -------------------------------CCCccccccEEEeccCCCCCCCc-cCCCCCCCcEEEeccccccccCCC
Q 013456          391 -------------------------------EEGAMTALEKLEIRNCPKLKMPT-ELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       391 -------------------------------~~~~~~~L~~L~l~~c~~l~~p~-~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                                                     ...+++.|+.|++++|+....|. .+.++..|++|+||||+++.+|+.
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t  425 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT  425 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH
Confidence                                           11245688888888887777743 456788888888888888888754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=8.9e-18  Score=167.60  Aligned_cols=260  Identities=19%  Similarity=0.149  Sum_probs=196.4

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      ..-.+|+++++.+..+|..+.  .+|+.|++.+|.++.+|..   +++|++|++++|+++.+|..   .++|+.|++++|
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            557789999999999998775  4899999999999999863   58899999999999988864   468999999999


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .+.. +|.     ..++|+.|++.++.... ++.   .+++|+.|++++|.+.  .++..   ..+|+.|.+++|.+...
T Consensus       273 ~L~~-Lp~-----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~--~Lp~l---p~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        273 PLTH-LPA-----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA--SLPAL---PSELCKLWAYNNQLTSL  337 (788)
T ss_pred             chhh-hhh-----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc--cCCCC---cccccccccccCccccc
Confidence            8763 331     23567778777775542 332   3478999999998653  34432   34688888998877655


Q ss_pred             CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456          289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN  368 (442)
Q Consensus       289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  368 (442)
                      |.        ...+|+.|+++++...  .+...|.+|+.|++++|.++. +|..   ..+|+.|++++|.+.. .+.   
T Consensus       338 P~--------lp~~Lq~LdLS~N~Ls--~LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~---  399 (788)
T PRK15387        338 PT--------LPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV---  399 (788)
T ss_pred             cc--------cccccceEecCCCccC--CCCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCC---
Confidence            43        1257999999987422  233356789999999998874 4432   3579999999998874 222   


Q ss_pred             CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccccc
Q 013456          369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                       ..++|+.|++++|. +..+|.   ...+|+.|++++|.+.++|..+..+++|+.|+|++|+++..
T Consensus       400 -l~s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        400 -LPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             -cccCCCEEEccCCc-CCCCCc---chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence             24689999999974 555653   24578999999999888899999999999999999999643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=1.2e-16  Score=160.40  Aligned_cols=246  Identities=16%  Similarity=0.169  Sum_probs=142.7

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      .+..+|+++++.+..+|..+.  ++|+.|++++|.+..+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            567889999888888887664  578999999999998887764  589999999999988887654  47899999988


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .+. .+|.  .+  .++|+.|++..+... .++..+.  ++|+.|++++|.+.  .+|..+.  ++|+.|++++|.....
T Consensus       252 ~L~-~LP~--~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt--~LP~~lp--~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        252 RIT-ELPE--RL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR--TLPAHLP--SGITHLNVQSNSLTAL  319 (754)
T ss_pred             ccC-cCCh--hH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc--cCcccch--hhHHHHHhcCCccccC
Confidence            775 3442  12  245666666555443 2333332  35666666666432  3333221  3566666666554433


Q ss_pred             CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456          289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN  368 (442)
Q Consensus       289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  368 (442)
                      +..                             ++++|+.|++++|.++. +|..+  .++|+.|++++|.+.. .+..  
T Consensus       320 P~~-----------------------------l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~--  364 (754)
T PRK15370        320 PET-----------------------------LPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPET--  364 (754)
T ss_pred             Ccc-----------------------------ccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChh--
Confidence            221                             12455555555555543 23222  2456666666655542 1111  


Q ss_pred             CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCC----CCCCCcEEEeccccc
Q 013456          369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELT----KLSNLKELTLVKKVL  431 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~----~l~~L~~L~l~~n~l  431 (442)
                       -.++|+.|++++|. +..+|...  .++|+.|++++|....+|..+.    .++++..|++.+|++
T Consensus       365 -lp~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        365 -LPPTITTLDVSRNA-LTNLPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             -hcCCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence             12456666666542 33333221  1346666666665554444332    235556666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=8.3e-16  Score=153.64  Aligned_cols=258  Identities=17%  Similarity=0.072  Sum_probs=180.4

Q ss_pred             ceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCC
Q 013456           97 LHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHS  176 (442)
Q Consensus        97 lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~  176 (442)
                      -..|.+.++....+|...             .++|+.|++.+|.+..+|..   +++|++|++++|.++.+|..   .++
T Consensus       203 ~~~LdLs~~~LtsLP~~l-------------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~s  263 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-------------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPG  263 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-------------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccc
Confidence            445666666555555431             24688899998888888753   57889999999988888753   467


Q ss_pred             CcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEE
Q 013456          177 LETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLI  256 (442)
Q Consensus       177 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~  256 (442)
                      |++|++++|.++.+|...   .+|+.|++++|.+.. +|.     .+++|+.|++.++.... ++.   ...+|+.|+++
T Consensus       264 L~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls  330 (788)
T PRK15387        264 LLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAY  330 (788)
T ss_pred             cceeeccCCchhhhhhch---hhcCEEECcCCcccc-ccc-----cccccceeECCCCcccc-CCC---Ccccccccccc
Confidence            889999999888777633   568888888887763 332     24678888887775543 222   12457778888


Q ss_pred             eeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCC
Q 013456          257 CNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLS  336 (442)
Q Consensus       257 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (442)
                      +|.+  ..+|.   -..+|+.|++++|.+...|..        ..+|+.|.+.++...  .+...+.+|+.|++++|.++
T Consensus       331 ~N~L--~~LP~---lp~~Lq~LdLS~N~Ls~LP~l--------p~~L~~L~Ls~N~L~--~LP~l~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        331 NNQL--TSLPT---LPSGLQELSVSDNQLASLPTL--------PSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLT  395 (788)
T ss_pred             cCcc--ccccc---cccccceEecCCCccCCCCCC--------Ccccceehhhccccc--cCcccccccceEEecCCccc
Confidence            7754  33443   125788999998887765532        346777777765321  23334578999999999887


Q ss_pred             CCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC
Q 013456          337 EDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM  411 (442)
Q Consensus       337 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  411 (442)
                      . +|..   .++|+.|++++|.+.. .+.    .+.+|+.|++++| .++.+|...+.+++|+.|++++|+....
T Consensus       396 ~-LP~l---~s~L~~LdLS~N~Lss-IP~----l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        396 S-LPVL---PSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             C-CCCc---ccCCCEEEccCCcCCC-CCc----chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence            4 3432   3689999999998864 222    2457889999985 5677887778899999999999987754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=2.1e-17  Score=129.96  Aligned_cols=158  Identities=23%  Similarity=0.220  Sum_probs=78.0

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  207 (442)
                      +.+.+.|-|++|.+..+|+.+.++++|+.|++.+|+++++|.+++.+++|+.|++..|++..+|.+++.++-|+.||+.+
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      |.+... ..|..+-.++.|+.|.+.++.. ..+|..++.+++|+.|.+..|..  -.+|..++.+..|+.|.+.+|....
T Consensus       112 nnl~e~-~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  112 NNLNEN-SLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             cccccc-cCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHHHhcccceeee
Confidence            544322 1122333444444444433332 23444455555555555554422  3445555555555555555554443


Q ss_pred             CC
Q 013456          288 VP  289 (442)
Q Consensus       288 ~~  289 (442)
                      .|
T Consensus       188 lp  189 (264)
T KOG0617|consen  188 LP  189 (264)
T ss_pred             cC
Confidence            33

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=3e-17  Score=145.44  Aligned_cols=126  Identities=23%  Similarity=0.270  Sum_probs=79.7

Q ss_pred             eeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhcccccceecccc-cccccCCcc-cccc
Q 013456           98 HSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRR-TFIDSIPKS-LGDL  174 (442)
Q Consensus        98 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~-~~i~~lp~~-~~~l  174 (442)
                      ..+.+..+....+|++.|          +.+++||.|||++|.+..+ |..|..++.|-.|-+.+ |.|+++|.. |++|
T Consensus        70 veirLdqN~I~~iP~~aF----------~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAF----------KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             eEEEeccCCcccCChhhc----------cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            334455666666666544          3367777777777776665 45677777777766666 677777654 5777


Q ss_pred             CCCcEEeecCcccc-ccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccC
Q 013456          175 HSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       175 ~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      ..|+.|.+.-|++. .....+..+++|..|.+.+|.+...-..  .+..+.+++.+++..++
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcCc
Confidence            77777777777776 3345566777777777777765432211  35566666666655443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.57  E-value=1.5e-16  Score=148.08  Aligned_cols=261  Identities=17%  Similarity=0.086  Sum_probs=140.9

Q ss_pred             cCceeEEEecCCCCCC-----CChhhhhcccccceeccccccccc-------CCccccccCCCcEEeecCcccc-ccchh
Q 013456          127 GYRLLRVLDLEDVYKP-----VLPETIGKLQLLRYVGLRRTFIDS-------IPKSLGDLHSLETLDMKHTNIT-SLPKS  193 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~i~~-------lp~~~~~l~~L~~L~L~~~~l~-~lp~~  193 (442)
                      .+.+|++|+++++.+.     .++..+...+.|++|+++++.+..       ++..+.++++|++|++++|.+. ..+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            3556888888877652     244556666677777777765542       2234556667777777777665 34444


Q ss_pred             hhcccc---cceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccc-cCcceeeEEeecccc---chhH
Q 013456          194 IWKVKT---LRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLICNIASL---GKIT  266 (442)
Q Consensus       194 i~~l~~---L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~---~~~~  266 (442)
                      +..+.+   |++|++++|.+.....                      ......+..+ ++|+.|++++|.+..   ..+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~----------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGL----------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHH----------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            544444   7777777665432100                      0112233344 566666666665431   1233


Q ss_pred             HhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCC----Cccc
Q 013456          267 NLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSED----PMPV  342 (442)
Q Consensus       267 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  342 (442)
                      ..+..+.+|+.|++++|...........                     ..+... ++|+.|++++|.+++.    ....
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~---------------------~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALA---------------------EGLKAN-CNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHH---------------------HHHHhC-CCCCEEeccCCccChHHHHHHHHH
Confidence            3444555666666666543321000000                     001112 4666677766665532    2234


Q ss_pred             ccCCCCCcEEEeCcccccCcccccCC----CCCCcccEEEecccCCcc----eEEeCCCccccccEEEeccCCCCCC---
Q 013456          343 LGQLRELKALRLFAHSYIGEKMTCGN----GGFPQLRVLKLWVLKELK----EWTIEEGAMTALEKLEIRNCPKLKM---  411 (442)
Q Consensus       343 l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~~---  411 (442)
                      +..+++|+.|++++|.+.+.......    ...+.|++|++++|....    .+......+++|+.+++++|.....   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            55667788888877776542222111    124678888887764321    1112223457788888888876643   


Q ss_pred             --CccCCCC-CCCcEEEeccccc
Q 013456          412 --PTELTKL-SNLKELTLVKKVL  431 (442)
Q Consensus       412 --p~~l~~l-~~L~~L~l~~n~l  431 (442)
                        ...+... +.|+++++.+|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         297 LLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhhcCCchhhcccCCCCC
Confidence              2222333 5788888777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=5.6e-17  Score=127.64  Aligned_cols=155  Identities=22%  Similarity=0.247  Sum_probs=123.6

Q ss_pred             hhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456          147 TIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL  226 (442)
Q Consensus       147 ~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  226 (442)
                      .+.++.+...|.|++|.+..+|..++.+.+|+.|++.+|+++++|..++.+++|++|+++-|.+. ..  |.+++.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~l--prgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-IL--PRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cC--ccccCCCchh
Confidence            34567788999999999999999999999999999999999999999999999999999988765 33  3479999999


Q ss_pred             ccccccccCCC-CCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCce
Q 013456          227 RTLWGLSIGKK-SPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE  305 (442)
Q Consensus       227 ~~L~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  305 (442)
                      +.|++.++... ...|..|-.++-|+.|+++.|.+  +.+|..++++++|+.|.+..|...+.|.+     +..+..|++
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpke-----ig~lt~lre  177 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKE-----IGDLTRLRE  177 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHH-----HHHHHHHHH
Confidence            99998887665 35666777788888888888754  67788888888888888888877666554     233444444


Q ss_pred             EEeccc
Q 013456          306 LYLLGR  311 (442)
Q Consensus       306 l~l~~~  311 (442)
                      |++-|+
T Consensus       178 lhiqgn  183 (264)
T KOG0617|consen  178 LHIQGN  183 (264)
T ss_pred             Hhcccc
Confidence            444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=1.3e-14  Score=145.97  Aligned_cols=247  Identities=17%  Similarity=0.152  Sum_probs=162.1

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcccccc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDL  174 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l  174 (442)
                      .+...|.+.+.....+|...             .+.|+.|++++|.+..+|..+.  .+|++|++++|.+..+|..+.  
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--  240 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--  240 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--
Confidence            34455666655444444320             2568999999999989987664  589999999999998987664  


Q ss_pred             CCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceee
Q 013456          175 HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLG  254 (442)
Q Consensus       175 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~  254 (442)
                      .+|+.|++++|.+..+|..+.  .+|+.|++++|.+. .+|.  .+  .++|+.|++.++.... ++..+  .++|+.|+
T Consensus       241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~--~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~  310 (754)
T PRK15370        241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE--NL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLN  310 (754)
T ss_pred             ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc--cc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHH
Confidence            479999999999999888764  58999999998876 3443  23  2578888888876543 33322  24788899


Q ss_pred             EEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccC
Q 013456          255 LICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSY  334 (442)
Q Consensus       255 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (442)
                      +++|.+.  .+|..+  .++|+.|.+++|.....+...       +++|+.|+++++.... ....++++|+.|++++|.
T Consensus       311 Ls~N~Lt--~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-------~~sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~  378 (754)
T PRK15370        311 VQSNSLT--ALPETL--PPGLKTLEAGENALTSLPASL-------PPELQVLDVSKNQITV-LPETLPPTITTLDVSRNA  378 (754)
T ss_pred             hcCCccc--cCCccc--cccceeccccCCccccCChhh-------cCcccEEECCCCCCCc-CChhhcCCcCEEECCCCc
Confidence            9988653  344433  368999999998776555421       2567777777663211 111234677777777777


Q ss_pred             CCCCCcccccCCCCCcEEEeCcccccCcc--cccCCCCCCcccEEEecccC
Q 013456          335 LSEDPMPVLGQLRELKALRLFAHSYIGEK--MTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       335 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~  383 (442)
                      ++. +|..+.  .+|+.|++++|.+....  .......++++..|.+.+|+
T Consensus       379 Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        379 LTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCC-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            663 343332  35777777777665321  11113345666777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.54  E-value=1.3e-14  Score=148.15  Aligned_cols=324  Identities=25%  Similarity=0.253  Sum_probs=210.3

Q ss_pred             ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCC--CCCChh-hhhcccccceecccccc-ccc
Q 013456           91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY--KPVLPE-TIGKLQLLRYVGLRRTF-IDS  166 (442)
Q Consensus        91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~-~l~~l~~L~~L~L~~~~-i~~  166 (442)
                      .......|...+.++....++..            ..++.|++|-+.++.  +..++. .|..+++|++|||++|. +..
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~------------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGS------------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             ccchhheeEEEEeccchhhccCC------------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence            34557777777777655444432            456789999999775  566655 57789999999999864 789


Q ss_pred             CCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccC--CCCCchhhh
Q 013456          167 IPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG--KKSPPLNWL  244 (442)
Q Consensus       167 lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~--~~~~~~~~l  244 (442)
                      +|++++.|-+||+|+++++.++.+|.++.+|.+|.+|++..+......  +.....+++|++|.+....  .......++
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el  664 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKEL  664 (889)
T ss_pred             CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhh
Confidence            999999999999999999999999999999999999999988765444  3245569999999987664  223445556


Q ss_pred             ccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccC---
Q 013456          245 ENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHEL---  321 (442)
Q Consensus       245 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---  321 (442)
                      ..+.+|+.+.+.....   .+...+..+..|..+...-... ..........+..+.+|+.|.+.++......+...   
T Consensus       665 ~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~-~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~  740 (889)
T KOG4658|consen  665 ENLEHLENLSITISSV---LLLEDLLGMTRLRSLLQSLSIE-GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL  740 (889)
T ss_pred             hcccchhhheeecchh---HhHhhhhhhHHHHHHhHhhhhc-ccccceeecccccccCcceEEEEcCCCchhhccccccc
Confidence            6666777666654321   2222233444444332211100 01112223456678889999997764311111110   


Q ss_pred             -----CCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc---------CCCCCCcccEE-EecccCCcc
Q 013456          322 -----PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC---------GNGGFPQLRVL-KLWVLKELK  386 (442)
Q Consensus       322 -----~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------~~~~~~~L~~L-~l~~~~~l~  386 (442)
                           ++++..+.+..|... ..+.+....|+|+.|.+..|...+.+...         ....|++++.+ .+.+.+.+.
T Consensus       741 ~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~  819 (889)
T KOG4658|consen  741 IVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLP  819 (889)
T ss_pred             chhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCc
Confidence                 134444445555433 23445566799999999998776554332         01235556666 355555666


Q ss_pred             eEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccc--cccccCCCCC
Q 013456          387 EWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKK--VLKMKPEDAW  439 (442)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n--~l~~~p~~~~  439 (442)
                      .+....-.++.|+.+.+..|+.+.      .+|.+.++.+.+|  .+...|+..|
T Consensus       820 ~i~~~~l~~~~l~~~~ve~~p~l~------~~P~~~~~~i~~~~~~~~~~~~~~~  868 (889)
T KOG4658|consen  820 QLYWLPLSFLKLEELIVEECPKLG------KLPLLSTLTIVGCEEKLKEYPDGEW  868 (889)
T ss_pred             eeEecccCccchhheehhcCcccc------cCccccccceeccccceeecCCccc
Confidence            655555556678888888876554      5667777888885  6677777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=9.4e-16  Score=142.74  Aligned_cols=118  Identities=19%  Similarity=0.095  Sum_probs=81.7

Q ss_pred             CCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCC-------Chhhhhcccccceecccc
Q 013456           89 SDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPV-------LPETIGKLQLLRYVGLRR  161 (442)
Q Consensus        89 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------l~~~l~~l~~L~~L~L~~  161 (442)
                      ..+..+.+++.+.+.+.....   .....+.+   .+...+.++.|+++++.+..       ++..+..+++|++|++++
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~---~~~~~i~~---~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~   90 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGE---EAAKALAS---ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD   90 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcH---HHHHHHHH---HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC
Confidence            344566778888888764321   11122111   23567889999999876653       345677788999999999


Q ss_pred             cccc-cCCccccccCC---CcEEeecCcccc-----ccchhhhcc-cccceeeeccccccc
Q 013456          162 TFID-SIPKSLGDLHS---LETLDMKHTNIT-----SLPKSIWKV-KTLRHLYLNDIHLQM  212 (442)
Q Consensus       162 ~~i~-~lp~~~~~l~~---L~~L~L~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~  212 (442)
                      |.+. ..+..+..+..   |++|++++|++.     .+...+..+ ++|+.|++++|.+..
T Consensus        91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116          91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence            8876 34445555554   999999999877     233455667 899999999998763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=1.4e-15  Score=134.98  Aligned_cols=269  Identities=22%  Similarity=0.166  Sum_probs=158.2

Q ss_pred             ceeEEEecCCCCCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecC-ccccccchh-hhcccccceee
Q 013456          129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKH-TNITSLPKS-IWKVKTLRHLY  204 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~  204 (442)
                      +.-..++|.-|.+..+|+ +|+.+++||.|+|+.|.|..| |+.|.++..|..|-+.+ |+|+++|.. +++|..|+-|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            457788999999999987 788999999999999999988 88899999988888877 789999875 66899999998


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccch-----------hHHhhcCCc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK-----------ITNLIQGLT  273 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~l~~l~  273 (442)
                      +.-|++.-....  .+..+++|..|.+.++.........+..+..++.+.+..|.+....           .+-.++...
T Consensus       147 lNan~i~Cir~~--al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  147 LNANHINCIRQD--ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             cChhhhcchhHH--HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            888877533322  4778888888887777665544446677777777777655321010           111112222


Q ss_pred             ccccceeeccccccCCccccccccCCcCCCceE--Eecc-ccC----CCcccccCCCceeEEEEeccCCCCCCcccccCC
Q 013456          274 SLESLRLRSINDFYVPSDLAIGSLNNHKELKEL--YLLG-RLP----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL  346 (442)
Q Consensus       274 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l--~l~~-~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  346 (442)
                      ......+....+...+...    +...  ++.+  .+.+ +.+    +...+..+ ++|++|++++|.++..-..+|..+
T Consensus       225 c~~p~rl~~~Ri~q~~a~k----f~c~--~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARK----FLCS--LESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             ecchHHHHHHHhcccchhh----hhhh--HHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcch
Confidence            2222222222221111110    0000  1111  0000 000    01123333 566666666666665555566666


Q ss_pred             CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCC
Q 013456          347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP  407 (442)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  407 (442)
                      ..++.|.|..|.+... -...+.++..|+.|+|++|....--+..+....+|.+|.+-.|+
T Consensus       298 a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            6666666666655321 12225566666666666654333333344445555556554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.5e-11  Score=99.95  Aligned_cols=129  Identities=25%  Similarity=0.282  Sum_probs=45.3

Q ss_pred             hcCceeEEEecCCCCCCCChhhhh-cccccceecccccccccCCccccccCCCcEEeecCccccccchhhh-ccccccee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIG-KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLRHL  203 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L  203 (442)
                      -+...+|.|+|.++.+..+. .++ .+.+|+.|++++|.|..++ .+..+++|++|++++|.++.+...+. .+++|++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            44567899999999888774 455 5788999999999998885 58889999999999999998876664 68999999


Q ss_pred             eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccc--hhHHhhcCCcccccceee
Q 013456          204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLG--KITNLIQGLTSLESLRLR  281 (442)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~  281 (442)
                      ++++|.+......                         ..+..+++|+.|++.+|+....  .-...+..+++|+.|+-.
T Consensus        94 ~L~~N~I~~l~~l-------------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNEL-------------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCC-------------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHh-------------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            9999876532111                         1234455566666655543311  123344556667666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=4.4e-12  Score=118.13  Aligned_cols=133  Identities=23%  Similarity=0.274  Sum_probs=99.0

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  207 (442)
                      +.--...|++.|.+..+|..+..+..|+.+.|+.|.+..+|..++++..|.+|||+.|++..+|..++.|+ |+.|-+++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            45566778899999999999999999999999999999999999999999999999999999999998876 88898888


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      |++. ..|.  .++.+.                        .|..|+.+.|.+  ..++..++++.+|+.|.+..|....
T Consensus       153 Nkl~-~lp~--~ig~~~------------------------tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~  203 (722)
T KOG0532|consen  153 NKLT-SLPE--EIGLLP------------------------TLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLED  203 (722)
T ss_pred             Cccc-cCCc--ccccch------------------------hHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhh
Confidence            8765 3343  244444                        444455554432  4455555566666666666655554


Q ss_pred             CCc
Q 013456          288 VPS  290 (442)
Q Consensus       288 ~~~  290 (442)
                      .|.
T Consensus       204 lp~  206 (722)
T KOG0532|consen  204 LPE  206 (722)
T ss_pred             CCH
Confidence            444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.1e-11  Score=110.24  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             cccccceecccccccccCCc--cccccCCCcEEeecCcccc---ccchhhhcccccceeeecccccc
Q 013456          150 KLQLLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNIT---SLPKSIWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~  211 (442)
                      ++++||...|.++.+...+.  ....|++++.|||+.|-+.   .+-.....|++|+.|+++.|.+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            34455555555544443331  3344555555555555322   22222334555555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=7.4e-12  Score=110.05  Aligned_cols=185  Identities=22%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             hcCceeEEEecCCCCCCC-----Chhhhhcccccceeccccccc----ccCCcc-------ccccCCCcEEeecCcccc-
Q 013456          126 RGYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFI----DSIPKS-------LGDLHSLETLDMKHTNIT-  188 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i----~~lp~~-------~~~l~~L~~L~L~~~~l~-  188 (442)
                      ..+..++.|+|+||.++.     +...+.+.+.|+..+++.-..    .++|+.       +..+++|++||||+|-+. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            346667777777776543     334555666777777765322    233432       334567788888877444 


Q ss_pred             c----cchhhhcccccceeeecccccccccc-----------CCCCCCCCcccccccccccCCCC----CchhhhccccC
Q 013456          189 S----LPKSIWKVKTLRHLYLNDIHLQMSVQ-----------KPFVKPSLTNLRTLWGLSIGKKS----PPLNWLENLSD  249 (442)
Q Consensus       189 ~----lp~~i~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~  249 (442)
                      .    +-.-+.++..|++|++.+|.+...-.           ...-+..-+.|+++....++...    .+...+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            2    22335567778888887776532110           01113344556665555444432    23445566677


Q ss_pred             cceeeEEeeccccc---hhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecc
Q 013456          250 LKNLGLICNIASLG---KITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG  310 (442)
Q Consensus       250 L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  310 (442)
                      |+.+.+..|.+...   .+...+..+++|+.|++.+|.+...-.......++.+++|+.+++..
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            77777776644322   23445666777777777776554322222223333444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.5e-11  Score=108.84  Aligned_cols=186  Identities=22%  Similarity=0.160  Sum_probs=112.3

Q ss_pred             hhccccCcceeeEEeeccc-cchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcc---c
Q 013456          243 WLENLSDLKNLGLICNIAS-LGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLK---L  318 (442)
Q Consensus       243 ~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~  318 (442)
                      ....+++++.|+++.|-+. ...+......+++|+.|+++.|..........   -...+.|+.|.+++|...+..   +
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls~k~V~~~  217 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLSWKDVQWI  217 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCCHHHHHHH
Confidence            3456677777777766332 23344555667788888888776543322211   114566777777776433322   2


Q ss_pred             ccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCC------
Q 013456          319 HELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE------  392 (442)
Q Consensus       319 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------  392 (442)
                      ...+|+|+.|++..|..-........-+..|+.|+|++|.+.+.......+.||.|+.|.++.|. +.++....      
T Consensus       218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~k  296 (505)
T KOG3207|consen  218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDK  296 (505)
T ss_pred             HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhh
Confidence            22347788888877742112222333456778888888877654433446778888888887753 33333222      


Q ss_pred             -CccccccEEEeccCCCCCC--CccCCCCCCCcEEEecccccc
Q 013456          393 -GAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKKVLK  432 (442)
Q Consensus       393 -~~~~~L~~L~l~~c~~l~~--p~~l~~l~~L~~L~l~~n~l~  432 (442)
                       ..+|+|+.|++..|++.++  ...+..+++|+.|.+.+|.+.
T Consensus       297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence             3578888888888887665  445666777777777777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=1.1e-11  Score=109.05  Aligned_cols=252  Identities=18%  Similarity=0.175  Sum_probs=128.8

Q ss_pred             hhhhcccccceecccccccc-----cCCccccccCCCcEEeecCc---ccc-ccchhh-------hcccccceeeecccc
Q 013456          146 ETIGKLQLLRYVGLRRTFID-----SIPKSLGDLHSLETLDMKHT---NIT-SLPKSI-------WKVKTLRHLYLNDIH  209 (442)
Q Consensus       146 ~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~---~l~-~lp~~i-------~~l~~L~~L~l~~~~  209 (442)
                      +.+.....+.+++|++|.++     .+...+.+.++|+.-++++=   +.. ++|+.+       ..+++|+.|++++|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34556778889999998776     23445666778888887764   222 555443       355688888888876


Q ss_pred             ccccccCC--CCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          210 LQMSVQKP--FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       210 ~~~~~~~~--~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      +....+..  ..+.++..|++|.+.+|.....-...++.  -|.+|.          ........++|+.+....|....
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeecccccc
Confidence            54221110  01233344444444433332211111110  000000          01112233455555555554443


Q ss_pred             CCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCC----CcccccCCCCCcEEEeCcccccCcc
Q 013456          288 VPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSED----PMPVLGQLRELKALRLFAHSYIGEK  363 (442)
Q Consensus       288 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~  363 (442)
                      .+.......++.+                      +.|+.+.++.|.+...    ....+..+++|+.|+|.+|.++...
T Consensus       172 ~ga~~~A~~~~~~----------------------~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg  229 (382)
T KOG1909|consen  172 GGATALAEAFQSH----------------------PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG  229 (382)
T ss_pred             ccHHHHHHHHHhc----------------------cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence            3332222222223                      4555555555544321    2234566777777777777665432


Q ss_pred             ---cccCCCCCCcccEEEecccCCcceE-----EeCCCccccccEEEeccCCCCCC-----CccCCCCCCCcEEEecccc
Q 013456          364 ---MTCGNGGFPQLRVLKLWVLKELKEW-----TIEEGAMTALEKLEIRNCPKLKM-----PTELTKLSNLKELTLVKKV  430 (442)
Q Consensus       364 ---~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~-----p~~l~~l~~L~~L~l~~n~  430 (442)
                         ....+..++.|+.|.+++|..-..-     .......|+|+.|.+.+|.+...     ...+...+.|+.|+|++|.
T Consensus       230 s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  230 SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence               2223556667777777776422211     11123467778888777777653     2233456777788888887


Q ss_pred             c
Q 013456          431 L  431 (442)
Q Consensus       431 l  431 (442)
                      +
T Consensus       310 l  310 (382)
T KOG1909|consen  310 L  310 (382)
T ss_pred             c
Confidence            7

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=5.6e-10  Score=107.00  Aligned_cols=85  Identities=28%  Similarity=0.454  Sum_probs=64.5

Q ss_pred             cCceeEEEecCCCCCCCChhhhhccc-ccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          127 GYRLLRVLDLEDVYKPVLPETIGKLQ-LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      .++.++.|++.++.+..++.....+. +|++|++++|.+..+|..++.+++|+.|+++.|++.++|...+.++.|+.|++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            35667788888777777777766664 78888888887777776777788888888888888777777767777888888


Q ss_pred             cccccc
Q 013456          206 NDIHLQ  211 (442)
Q Consensus       206 ~~~~~~  211 (442)
                      ++|.+.
T Consensus       194 s~N~i~  199 (394)
T COG4886         194 SGNKIS  199 (394)
T ss_pred             cCCccc
Confidence            777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=3.2e-11  Score=112.53  Aligned_cols=158  Identities=25%  Similarity=0.286  Sum_probs=133.7

Q ss_pred             cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      .|-.|..+.++.|.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+
T Consensus        96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s  174 (722)
T KOG0532|consen   96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS  174 (722)
T ss_pred             HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh
Confidence            3566888889989999999999999999999999999999999988775 999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      .|.+.. .|.  .++.+.+|+.|.+..+... .+++++..+ .|..||+++|.+  ..+|-.+.+|++|++|-|.+|...
T Consensus       175 ~nei~s-lps--ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki--s~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  175 KNEIQS-LPS--QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI--SYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhh-chH--HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce--eecchhhhhhhhheeeeeccCCCC
Confidence            998763 333  5889999999987776654 456667744 588999999955  688999999999999999999887


Q ss_pred             cCCccc
Q 013456          287 YVPSDL  292 (442)
Q Consensus       287 ~~~~~~  292 (442)
                      +.|..+
T Consensus       248 SPPAqI  253 (722)
T KOG0532|consen  248 SPPAQI  253 (722)
T ss_pred             CChHHH
Confidence            765543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.9e-11  Score=105.23  Aligned_cols=159  Identities=21%  Similarity=0.144  Sum_probs=77.8

Q ss_pred             CCcccccccccccCCCCCchhhhccccCcceeeEEeecc-ccchhHHhhcCCcccccceeeccccccCCccccccccCCc
Q 013456          222 SLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA-SLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNH  300 (442)
Q Consensus       222 ~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  300 (442)
                      .+.+|+.|++.+....+.+...++.-.+|+.|+++.+.. +...+.-.+..++.|..|+++||..+..........  -.
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h--is  285 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH--IS  285 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh--hc
Confidence            334444444444444444555666667777777775532 212233445667788888888876554322111111  13


Q ss_pred             CCCceEEeccccC-----CCcccccCCCceeEEEEeccC-CCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcc
Q 013456          301 KELKELYLLGRLP-----GPLKLHELPPNLRIFTLSLSY-LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQL  374 (442)
Q Consensus       301 ~~L~~l~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L  374 (442)
                      ++|..|+++|+..     ....+.+-+++|..|||++|. ++......+.+++.|++|.++.|..........+...|+|
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence            4555556655421     011222224566666666653 3333344455556666666655543221111124445555


Q ss_pred             cEEEeccc
Q 013456          375 RVLKLWVL  382 (442)
Q Consensus       375 ~~L~l~~~  382 (442)
                      .+|++.+|
T Consensus       366 ~yLdv~g~  373 (419)
T KOG2120|consen  366 VYLDVFGC  373 (419)
T ss_pred             EEEEeccc
Confidence            55555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=1.6e-10  Score=99.69  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=75.8

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEE
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE  402 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  402 (442)
                      |.++.|+++.|.++..  ..+..+++|+.|++++|.++...  .+-..+.+.++|.+++| .++++.. .+.+-+|..|+
T Consensus       307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~--Gwh~KLGNIKtL~La~N-~iE~LSG-L~KLYSLvnLD  380 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV--GWHLKLGNIKTLKLAQN-KIETLSG-LRKLYSLVNLD  380 (490)
T ss_pred             cceeEEeccccceeee--hhhhhcccceEeecccchhHhhh--hhHhhhcCEeeeehhhh-hHhhhhh-hHhhhhheecc
Confidence            6778888888877643  23777788888888888765422  12345777888888874 3333321 23466788888


Q ss_pred             eccCCCCCC--CccCCCCCCCcEEEeccccccccCC
Q 013456          403 IRNCPKLKM--PTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       403 l~~c~~l~~--p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                      +++|++-+.  ..+++++|-|+.+.+.+|++..+|+
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            888887765  7778888888888888888887765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.6e-11  Score=101.52  Aligned_cols=183  Identities=20%  Similarity=0.090  Sum_probs=127.6

Q ss_pred             ccccccccccCCCC-CchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCC
Q 013456          225 NLRTLWGLSIGKKS-PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL  303 (442)
Q Consensus       225 ~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L  303 (442)
                      .||.+++....... .....+..+.+|+.|.+.++... +.+...+.+-.+|+.|+++.++..+.-.  .--.+..+..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~--~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENA--LQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhH--HHHHHHhhhhH
Confidence            46666665544432 23345788999999999998876 7788888889999999999987654221  11235578889


Q ss_pred             ceEEeccccCC----CcccccCCCceeEEEEeccCC--CCCCc-ccccCCCCCcEEEeCcccccCcccccCCCCCCcccE
Q 013456          304 KELYLLGRLPG----PLKLHELPPNLRIFTLSLSYL--SEDPM-PVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRV  376 (442)
Q Consensus       304 ~~l~l~~~~~~----~~~~~~~~~~L~~L~l~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  376 (442)
                      +.|+++.+...    ...+...-++|+.|+++++.-  ..... ....++|+|..|+|++|..........+..|+.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            99999876432    222334457899999998742  22222 234679999999999986654443344778999999


Q ss_pred             EEecccCCcc-eEEeCCCccccccEEEeccCCCCC
Q 013456          377 LKLWVLKELK-EWTIEEGAMTALEKLEIRNCPKLK  410 (442)
Q Consensus       377 L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~  410 (442)
                      |.++.|..+. +--.....+|+|.+|++.+|-..+
T Consensus       343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt  377 (419)
T KOG2120|consen  343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT  377 (419)
T ss_pred             eehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence            9999987553 222345678999999999986543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.85  E-value=1.1e-09  Score=90.35  Aligned_cols=127  Identities=23%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhh-cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIR-GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL  171 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~  171 (442)
                      +..++|.|.+.++....+.            .+. .+.+|++|++++|.+.++. .+..+++|+.|++++|.|.++++.+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie------------~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE------------NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred             ccccccccccccccccccc------------chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence            4446677777776533221            112 4688999999999998884 5778999999999999999997666


Q ss_pred             -cccCCCcEEeecCccccccc--hhhhcccccceeeeccccccccccC-CCCCCCCccccccccc
Q 013456          172 -GDLHSLETLDMKHTNITSLP--KSIWKVKTLRHLYLNDIHLQMSVQK-PFVKPSLTNLRTLWGL  232 (442)
Q Consensus       172 -~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~~~  232 (442)
                       ..+++|++|++++|+|..+.  ..+..+++|++|++.+|.+...... ...+..+|+|+.|+..
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence             46899999999999887543  4577899999999999976532110 0123444555555533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.79  E-value=3e-10  Score=102.29  Aligned_cols=107  Identities=26%  Similarity=0.374  Sum_probs=50.9

Q ss_pred             CceeEEEEeccC-CCCCCccccc-CCCCCcEEEeCcccccCcc-cccCCCCCCcccEEEecccCCcceE-----EeCCCc
Q 013456          323 PNLRIFTLSLSY-LSEDPMPVLG-QLRELKALRLFAHSYIGEK-MTCGNGGFPQLRVLKLWVLKELKEW-----TIEEGA  394 (442)
Q Consensus       323 ~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~  394 (442)
                      .+|+.+.++.|. +++.-...++ +++.|+.+++.++...... +.....+++.|+.|.++.|..++.-     .....+
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            455555555542 2322222332 2455555555555443222 1122345556666666655443322     122234


Q ss_pred             cccccEEEeccCCCCCC--CccCCCCCCCcEEEeccc
Q 013456          395 MTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKK  429 (442)
Q Consensus       395 ~~~L~~L~l~~c~~l~~--p~~l~~l~~L~~L~l~~n  429 (442)
                      +..|+.+.+.+|+....  .+.+..+++|+.+++-+|
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            55566666666655543  444555566666665555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=5e-09  Score=100.45  Aligned_cols=178  Identities=26%  Similarity=0.249  Sum_probs=135.7

Q ss_pred             cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcC-ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc
Q 013456           92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGY-RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS  170 (442)
Q Consensus        92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~  170 (442)
                      ...+.+..+.+.++....++..           ...+ ++|+.|+++++.+..+|..+..++.|+.|++++|.+.++|..
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~-----------~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPL-----------IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             hcccceeEEecCCcccccCccc-----------cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence            3446788888888776666543           0123 389999999999999998999999999999999999999988


Q ss_pred             ccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456          171 LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL  250 (442)
Q Consensus       171 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L  250 (442)
                      .+.+++|+.|++++|.+..+|..+..+..|+.|.+++|.......   .+.+++++..+.+..+... ..+..++.++++
T Consensus       182 ~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l  257 (394)
T COG4886         182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLE-DLPESIGNLSNL  257 (394)
T ss_pred             hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceee-eccchhcccccc
Confidence            778999999999999999999988888889999999995332222   3677777777764443322 224567777888


Q ss_pred             ceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          251 KNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       251 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      +.|+++.|...  .+.. +..+.+++.|+++++....
T Consensus       258 ~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         258 ETLDLSNNQIS--SISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ceecccccccc--cccc-ccccCccCEEeccCccccc
Confidence            88888887543  3333 6677788888887766544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=1.6e-09  Score=93.58  Aligned_cols=130  Identities=26%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             cccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456          152 QLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG  231 (442)
Q Consensus       152 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~  231 (442)
                      +.|+.|+|++|.|+.+-+++.-++.++.|+++.|.+..+-. +..+++|++||+++|.+......   -.++-+.++|.+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGW---HLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhh---HhhhcCEeeeeh
Confidence            34455555555555554444444555555555555544322 44455555555555544322111   122333344433


Q ss_pred             cccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          232 LSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      ..+...  ....++.+=+|..|++..|.+..-+....+++++.|+.+.+.+|....
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            333221  112344445666777777655433445567777888888877776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=1.1e-08  Score=69.29  Aligned_cols=57  Identities=33%  Similarity=0.505  Sum_probs=34.8

Q ss_pred             ccceecccccccccCCc-cccccCCCcEEeecCccccccch-hhhcccccceeeecccc
Q 013456          153 LLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIH  209 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~  209 (442)
                      +|++|++++|.+..+|. .+.++++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            56666666666666653 45666666666666666665543 45566666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=2e-08  Score=67.97  Aligned_cols=59  Identities=27%  Similarity=0.429  Sum_probs=49.6

Q ss_pred             ceeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccc
Q 013456          129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNI  187 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l  187 (442)
                      |+|++|++++|.+..+|. .|..+++|++|++++|.+..+| ..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            468899999888888875 6788999999999999888884 4678899999999998864

...

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=8.1e-08  Score=96.68  Aligned_cols=85  Identities=34%  Similarity=0.487  Sum_probs=49.7

Q ss_pred             eEEEecCCCCC-CCChhhhhcccccceecccccccc-cCCccccccCCCcEEeecCcccc-ccchhhhcccccceeeecc
Q 013456          131 LRVLDLEDVYK-PVLPETIGKLQLLRYVGLRRTFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       131 L~~L~l~~~~~-~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~  207 (442)
                      ++.|+|+++.+ +.+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55566665543 345555666666666666665553 45555666666666666666655 5566666666666666666


Q ss_pred             cccccccc
Q 013456          208 IHLQMSVQ  215 (442)
Q Consensus       208 ~~~~~~~~  215 (442)
                      |.+.+.+|
T Consensus       500 N~l~g~iP  507 (623)
T PLN03150        500 NSLSGRVP  507 (623)
T ss_pred             CcccccCC
Confidence            65555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.58  E-value=6e-09  Score=88.88  Aligned_cols=246  Identities=19%  Similarity=0.129  Sum_probs=141.2

Q ss_pred             cCceeEEEecCCCCCCC-----Chhhhhcccccceecccccccc----cCCc-------cccccCCCcEEeecCcccc-c
Q 013456          127 GYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFID----SIPK-------SLGDLHSLETLDMKHTNIT-S  189 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i~----~lp~-------~~~~l~~L~~L~L~~~~l~-~  189 (442)
                      .+..+..++||||.++.     +...+.+-.+|+..+++.-..+    .+|+       .+-+|++|++.+|+.|-+. +
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            47889999999987754     3445666788888888874332    2333       3457788888888888555 3


Q ss_pred             cch----hhhcccccceeeeccccccccccCCCCCCCC-cccccccccccCCCCCchhhhccccCcceeeEEeeccccch
Q 013456          190 LPK----SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSL-TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK  264 (442)
Q Consensus       190 lp~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  264 (442)
                      .|.    .|.+-+.|+||.+.+|.+-   |..  -+.. +.|.+|-         .......-|.|+......|      
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG---p~a--G~rigkal~~la---------~nKKaa~kp~Le~vicgrN------  167 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG---PIA--GGRIGKALFHLA---------YNKKAADKPKLEVVICGRN------  167 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC---ccc--hhHHHHHHHHHH---------HHhhhccCCCceEEEeccc------
Confidence            333    4556677888888877543   211  0111 1122111         0111233344444444444      


Q ss_pred             hHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCccccc-------CCCceeEEEEeccCCCC
Q 013456          265 ITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHE-------LPPNLRIFTLSLSYLSE  337 (442)
Q Consensus       265 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~  337 (442)
                                         +...++.......+....+|+.+.+..+...|..+..       ++.+|+.|++++|.++.
T Consensus       168 -------------------Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         168 -------------------RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             -------------------hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence                               4433333322222333344555555444332322111       13789999999998775


Q ss_pred             CC----cccccCCCCCcEEEeCcccccCccccc-----CCCCCCcccEEEecccCCcceE-------EeCCCccccccEE
Q 013456          338 DP----MPVLGQLRELKALRLFAHSYIGEKMTC-----GNGGFPQLRVLKLWVLKELKEW-------TIEEGAMTALEKL  401 (442)
Q Consensus       338 ~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~~L~~L  401 (442)
                      ..    ...+..++.|+.|.+.+|-++......     .-..+|+|..|...++..-..+       .+..+++|-|..|
T Consensus       229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l  308 (388)
T COG5238         229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL  308 (388)
T ss_pred             hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence            32    234566788999999998776554332     1235788888888776432221       1234678888888


Q ss_pred             EeccCCCCCC
Q 013456          402 EIRNCPKLKM  411 (442)
Q Consensus       402 ~l~~c~~l~~  411 (442)
                      .+.+|++.+.
T Consensus       309 e~ngNr~~E~  318 (388)
T COG5238         309 ERNGNRIKEL  318 (388)
T ss_pred             HHccCcchhH
Confidence            8888877653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=1e-08  Score=98.61  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=39.1

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+++|..|++.++.+..+...+..+++|++|++++|.|..+. .+..+..|+.|++++|.++.+. .+..++.|+.+++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL  169 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence            3345555555555554444333444555555555555554442 2444444555555555444332 1222444555555


Q ss_pred             cccccc
Q 013456          206 NDIHLQ  211 (442)
Q Consensus       206 ~~~~~~  211 (442)
                      ++|.+.
T Consensus       170 ~~n~i~  175 (414)
T KOG0531|consen  170 SYNRIV  175 (414)
T ss_pred             Ccchhh
Confidence            554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.53  E-value=6.5e-09  Score=93.91  Aligned_cols=295  Identities=18%  Similarity=0.113  Sum_probs=174.7

Q ss_pred             ceeEEEecCCCCCC---CChhhhhcccccceecccccc-cccC-Cccc-cccCCCcEEeecCc-cccc--cchhhhcccc
Q 013456          129 RLLRVLDLEDVYKP---VLPETIGKLQLLRYVGLRRTF-IDSI-PKSL-GDLHSLETLDMKHT-NITS--LPKSIWKVKT  199 (442)
Q Consensus       129 ~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~L~~~~-i~~l-p~~~-~~l~~L~~L~L~~~-~l~~--lp~~i~~l~~  199 (442)
                      ..||.|.+.|+.-.   .+-....++++++.|++.++. +++- -.++ ..+++|++|++..| .++.  +-.-...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            45788888877432   233345678888888888864 3221 1122 45788888888886 5552  2223446888


Q ss_pred             cceeeeccccccccccCCCCCCCCcccccccccccCCCCC--chhhhccccCcceeeEEee-ccccchhHHhhcCCcccc
Q 013456          200 LRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP--PLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLE  276 (442)
Q Consensus       200 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~  276 (442)
                      |++|+++.|.-...-........+++++.+...+|...+.  +...-+.+.-+.++++..+ ..+...+...-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888888875432211111234555566665554433221  1111123334555554433 333334444445678889


Q ss_pred             cceeeccccccCCccccccccCCcCCCceEEeccccC----CCcccccCCCceeEEEEeccCCCCC--CcccccCCCCCc
Q 013456          277 SLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLP----GPLKLHELPPNLRIFTLSLSYLSED--PMPVLGQLRELK  350 (442)
Q Consensus       277 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~  350 (442)
                      .|..+++...+  ....+.--..+.+|+.+.+.++..    ....++.-.+.|+.+++..+....+  +...-.+++.|+
T Consensus       298 ~l~~s~~t~~~--d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  298 VLCYSSCTDIT--DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhcccCCCCCc--hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            99888776532  222223334578899999988742    1233444457899999988754322  222234588999


Q ss_pred             EEEeCcccccCcc----cccCCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccCCCCCC---CccCCCCCCCc
Q 013456          351 ALRLFAHSYIGEK----MTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKM---PTELTKLSNLK  422 (442)
Q Consensus       351 ~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~---p~~l~~l~~L~  422 (442)
                      .+.++.|....+.    ......+...|+.+.+.+|+.+++-. .....+++|+.+++.+|....-   ...-.++|+++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK  455 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence            9999988765433    12224567789999999998776532 2234678999999999987653   22235667666


Q ss_pred             EEE
Q 013456          423 ELT  425 (442)
Q Consensus       423 ~L~  425 (442)
                      ...
T Consensus       456 v~a  458 (483)
T KOG4341|consen  456 VHA  458 (483)
T ss_pred             ehh
Confidence            543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=4.4e-08  Score=84.77  Aligned_cols=223  Identities=20%  Similarity=0.122  Sum_probs=130.4

Q ss_pred             ccceecccccccccCC--ccc-cccCCCcEEeecCcccc---ccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456          153 LLRYVGLRRTFIDSIP--KSL-GDLHSLETLDMKHTNIT---SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL  226 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp--~~~-~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  226 (442)
                      -++.|.+.++.|...-  ..| ...+.++.|||.+|.|+   ++-.-+.+|+.|+.|+++.|.+...      |+.++ +
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~------I~~lp-~  118 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD------IKSLP-L  118 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc------cccCc-c
Confidence            3445666666554432  223 35688999999999887   4444566899999999999877543      33332 1


Q ss_pred             ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456          227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL  306 (442)
Q Consensus       227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l  306 (442)
                                         ...+|+.|-+.++..........+..++.++.|.++.|+....-.+.... -.-.+.++++
T Consensus       119 -------------------p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~-e~~s~~v~tl  178 (418)
T KOG2982|consen  119 -------------------PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI-EDWSTEVLTL  178 (418)
T ss_pred             -------------------cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc-cccchhhhhh
Confidence                               12233444444333333334444455566666666665432211111000 0123455666


Q ss_pred             EeccccC----CCcccccCCCceeEEEEeccCCCCC-CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456          307 YLLGRLP----GPLKLHELPPNLRIFTLSLSYLSED-PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV  381 (442)
Q Consensus       307 ~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  381 (442)
                      +..+|..    ....+.+.++++..+-+..|.+... .......+|.+-.|+|..+.+........+.+|+.|..|.+.+
T Consensus       179 h~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  179 HQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE  258 (418)
T ss_pred             hcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence            6655531    1112344458888888888866532 2334566777778888888776655555678899999999998


Q ss_pred             cCCcceEEe------CCCccccccEEE
Q 013456          382 LKELKEWTI------EEGAMTALEKLE  402 (442)
Q Consensus       382 ~~~l~~~~~------~~~~~~~L~~L~  402 (442)
                      ++.+..+..      ..+.+++++.|+
T Consensus       259 ~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  259 NPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CcccccccCCcceEEEEeeccceEEec
Confidence            887765432      224456666664

>PLN03150 hypothetical protein; Provisional

Probab=98.36  E-value=8.4e-07  Score=89.45  Aligned_cols=107  Identities=19%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEe
Q 013456          324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEI  403 (442)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  403 (442)
                      .++.|+|++|.+.+.++..++.+++|+.|+|++|.+.+..+.. +..+++|+.|++++|.....++...+.+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3788999999999888999999999999999999988766654 788999999999998766678887889999999999


Q ss_pred             ccCCCCCC-CccCCC-CCCCcEEEeccccc
Q 013456          404 RNCPKLKM-PTELTK-LSNLKELTLVKKVL  431 (442)
Q Consensus       404 ~~c~~l~~-p~~l~~-l~~L~~L~l~~n~l  431 (442)
                      ++|..... |..+.. ..++..+++.+|..
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCcc
Confidence            99987755 877765 34677899998864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=3.7e-07  Score=56.48  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=17.6

Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS  189 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~  189 (442)
                      +|++|++++|.|+++|..+++|++|++|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            4455555555555554445555555555555554443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.28  E-value=3.6e-08  Score=95.18  Aligned_cols=126  Identities=25%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             cceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456          154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS  233 (442)
Q Consensus       154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~  233 (442)
                      |.+-+.++|.+..+-+++.-++.|+.|||++|+++..- .+..|++|+|||+++|.+.. +|.- ....++ |+.|.+.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l-~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQL-SMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-cccc-chhhhh-heeeeecc
Confidence            33344444444444445555666777777777666553 56666777777777766542 2210 122222 56665555


Q ss_pred             cCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          234 IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       234 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      +...  ....++++++|+.||+++|.+........+..+..|+.|.|.+|..
T Consensus       242 N~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            4432  2334566667777777766443222333344455666666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.27  E-value=1.4e-07  Score=90.67  Aligned_cols=127  Identities=24%  Similarity=0.209  Sum_probs=92.7

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  207 (442)
                      +..++.+.+..+.+..+-..+..+++|++|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence            566677778877777765667888899999999998888866578889999999999988877 3466777799999999


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCch-hhhccccCcceeeEEeecc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPL-NWLENLSDLKNLGLICNIA  260 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  260 (442)
                      |.+....    .+..+++|+.+++.++....... . +..+.+++.+.+..|..
T Consensus       150 N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  150 NLISDIS----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             Ccchhcc----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            8876432    34557777777776666543332 2 45666777777776643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.1e-06  Score=54.30  Aligned_cols=41  Identities=29%  Similarity=0.452  Sum_probs=35.1

Q ss_pred             ccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456          396 TALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       396 ~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                      ++|++|++++|.+..+|..+.++++|+.|++++|+++.+|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            57999999999988887779999999999999999998875

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=9.1e-07  Score=89.06  Aligned_cols=164  Identities=21%  Similarity=0.213  Sum_probs=92.7

Q ss_pred             hhhHHHHHHhhhcCceeEEEecCCCC--CCCChhhhhc-ccccceecccccccc--cCCccccccCCCcEEeecCccccc
Q 013456          115 FGNLLKMVIAIRGYRLLRVLDLEDVY--KPVLPETIGK-LQLLRYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITS  189 (442)
Q Consensus       115 ~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~l~~-l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~  189 (442)
                      +..+++.+..-..=.+|+.|+++|..  ...-|..++. ||.|+.|.+++-.+.  +...-..++++|..||+++++++.
T Consensus       108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC
Confidence            33444444433445678888887652  2333445554 678888887774332  222224567788888888887777


Q ss_pred             cchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCc------hhhhccccCcceeeEEeeccccc
Q 013456          190 LPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP------LNWLENLSDLKNLGLICNIASLG  263 (442)
Q Consensus       190 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~  263 (442)
                      + .++++|++|+.|.+.+-.+....... .+.+|++|+.|++.........      .+.-..+|+|+.||.+++.....
T Consensus       188 l-~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  188 L-SGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             c-HHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            7 67777888887777765544322111 3556677777776655443221      11123467777777777655422


Q ss_pred             hhHHhhcCCccccccee
Q 013456          264 KITNLIQGLTSLESLRL  280 (442)
Q Consensus       264 ~~~~~l~~l~~L~~L~l  280 (442)
                      .+...+...++|+.+..
T Consensus       266 ~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  266 ILEELLNSHPNLQQIAA  282 (699)
T ss_pred             HHHHHHHhCccHhhhhh
Confidence            23333333445555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=1.1e-06  Score=76.42  Aligned_cols=84  Identities=21%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             cCceeEEEecCCCCCCCCh---hhhhcccccceecccccccccCCccc-cccCCCcEEeecCcccc--ccchhhhccccc
Q 013456          127 GYRLLRVLDLEDVYKPVLP---ETIGKLQLLRYVGLRRTFIDSIPKSL-GDLHSLETLDMKHTNIT--SLPKSIWKVKTL  200 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~---~~l~~l~~L~~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L  200 (442)
                      .+..++.+||.+|.+..-.   .-+.++++|++|+++.|.+......+ ..+.+|++|-|.++++.  .....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4788999999999876543   34567999999999998765443333 35788999999998766  556667788889


Q ss_pred             ceeeeccccc
Q 013456          201 RHLYLNDIHL  210 (442)
Q Consensus       201 ~~L~l~~~~~  210 (442)
                      +.|.++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            9998888854

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=1.8e-05  Score=73.73  Aligned_cols=139  Identities=14%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             hccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCC
Q 013456          244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP  323 (442)
Q Consensus       244 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  323 (442)
                      +..+.++..|+++.|.  +..+|.   -..+|+.|.+++|.......+    .+  ..+|+.|.+.++.    .+..+|+
T Consensus        48 ~~~~~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs----~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCP----EISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCCc----hh--hhhhhheEccCcc----ccccccc
Confidence            4556788888888773  345552   234688888877654332111    11  3577788877653    1345667


Q ss_pred             ceeEEEEeccCCCCCCcccccCC-CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEE
Q 013456          324 NLRIFTLSLSYLSEDPMPVLGQL-RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE  402 (442)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  402 (442)
                      +|+.|++..+...     .+..+ ++|+.|.+.++...... .....-.++|++|.+++|..+. .+.  +-.++|+.|+
T Consensus       113 sLe~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~-~lp~~LPsSLk~L~Is~c~~i~-LP~--~LP~SLk~L~  183 (426)
T PRK15386        113 SVRSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQA-RIDNLISPSLKTLSLTGCSNII-LPE--KLPESLQSIT  183 (426)
T ss_pred             ccceEEeCCCCCc-----ccccCcchHhheecccccccccc-ccccccCCcccEEEecCCCccc-Ccc--cccccCcEEE
Confidence            7788877654432     12223 35666666433211000 0000112568888888776442 121  1225788888


Q ss_pred             eccC
Q 013456          403 IRNC  406 (442)
Q Consensus       403 l~~c  406 (442)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.02  E-value=3.4e-07  Score=88.65  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      ++.|+.|+|++|.+.+.. .+..|++|++|||++|.+..+|.- ...++ |+.|++++|.++++ .++.+|.+|+.||++
T Consensus       186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchh
Confidence            445555555555544442 444555555555555555444431 12222 55555555555544 334555555555555


Q ss_pred             cccccccccCCCCCCCCcccccccccccC
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      +|-+.+..... .++.+..|..|.+.++.
T Consensus       263 yNll~~hseL~-pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  263 YNLLSEHSELE-PLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             Hhhhhcchhhh-HHHHHHHHHHHhhcCCc
Confidence            55444322211 23444444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=3e-06  Score=65.09  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhc-ccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGK-LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY  204 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~-l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  204 (442)
                      .+-..|+..+|++|.+.++|+.|.. ++-++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            4455666666666666666665543 346666666666666666666666666666666666666666666666666666


Q ss_pred             eccccc
Q 013456          205 LNDIHL  210 (442)
Q Consensus       205 l~~~~~  210 (442)
                      ..+|..
T Consensus       130 s~~na~  135 (177)
T KOG4579|consen  130 SPENAR  135 (177)
T ss_pred             CCCCcc
Confidence            655543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.93  E-value=1.3e-06  Score=75.01  Aligned_cols=240  Identities=18%  Similarity=0.130  Sum_probs=129.4

Q ss_pred             cccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC----CC-------hhhhhcccccceeccccc
Q 013456           94 FEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP----VL-------PETIGKLQLLRYVGLRRT  162 (442)
Q Consensus        94 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l-------~~~l~~l~~L~~L~L~~~  162 (442)
                      +..+.-+.++++..+....+.+.+.      +.+-++|++.+++.-..+    .+       .+.+-.|++|+..+|+.|
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~------ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNV------IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHH------HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            5667777788876554332222222      244688888888854322    22       344567889999999998


Q ss_pred             ccc-cCCc----cccccCCCcEEeecCccccccc-----hhhh---------cccccceeeeccccccccccCCCCCCCC
Q 013456          163 FID-SIPK----SLGDLHSLETLDMKHTNITSLP-----KSIW---------KVKTLRHLYLNDIHLQMSVQKPFVKPSL  223 (442)
Q Consensus       163 ~i~-~lp~----~~~~l~~L~~L~L~~~~l~~lp-----~~i~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~l  223 (442)
                      .++ ..|+    -++.-+.|.+|.+++|.+-.+.     ..+.         .-+.|+....+.|++.....        
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~--------  174 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK--------  174 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH--------
Confidence            775 2333    3566788999999999766332     2222         22445555555544331100        


Q ss_pred             cccccccccccCCCCCchhhhccccCcceeeEEeeccccch----hHHhhcCCcccccceeeccccccCCccccccccCC
Q 013456          224 TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK----ITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNN  299 (442)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  299 (442)
                                    ......+....+|+.+.+..|.+....    ....+..+++|+.|++.+|..+.........+++.
T Consensus       175 --------------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~  240 (388)
T COG5238         175 --------------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE  240 (388)
T ss_pred             --------------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence                          012233444456777777766544221    11233456777777777766554333333344555


Q ss_pred             cCCCceEEeccccCCCccc--------ccCCCceeEEEEeccCCCCCCccc-------ccCCCCCcEEEeCcccccC
Q 013456          300 HKELKELYLLGRLPGPLKL--------HELPPNLRIFTLSLSYLSEDPMPV-------LGQLRELKALRLFAHSYIG  361 (442)
Q Consensus       300 ~~~L~~l~l~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~-------l~~l~~L~~L~l~~~~~~~  361 (442)
                      ++.|+.|.+..|.-.....        ..+.++|..|-+.+|.+.+.....       -..+|-|..|.+.||.+..
T Consensus       241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            5666666665553211100        111356777777766554432111       1345666666666666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=3.8e-05  Score=71.61  Aligned_cols=73  Identities=25%  Similarity=0.344  Sum_probs=54.0

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccc-cccccCCccccccCCCcEEeecCc-cccccchhhhccccccee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRR-TFIDSIPKSLGDLHSLETLDMKHT-NITSLPKSIWKVKTLRHL  203 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~-~~i~~lp~~~~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L  203 (442)
                      ..+++++.|++++|.+..+|. +  ..+|+.|.+++ +.+..+|+.+  ..+|++|++++| .+..+|..      |+.|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence            446889999999998888872 2  23699999988 4567777665  368999999998 77777754      5666


Q ss_pred             eecccc
Q 013456          204 YLNDIH  209 (442)
Q Consensus       204 ~l~~~~  209 (442)
                      ++..+.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.84  E-value=2e-06  Score=66.09  Aligned_cols=102  Identities=22%  Similarity=0.270  Sum_probs=79.5

Q ss_pred             CceeEEEecCCCCCCCChh---hhhcccccceecccccccccCCcccc-ccCCCcEEeecCccccccchhhhccccccee
Q 013456          128 YRLLRVLDLEDVYKPVLPE---TIGKLQLLRYVGLRRTFIDSIPKSLG-DLHSLETLDMKHTNITSLPKSIWKVKTLRHL  203 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~---~l~~l~~L~~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  203 (442)
                      -..+..++|+.|.+..+++   .+....+|...+|++|.++..|+.+. +.+.+++|++++|.++++|..+..++.|+.|
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            4557788999997765554   45566788888999999999998884 5568999999999999999999999999999


Q ss_pred             eeccccccccccCCCCCCCCccccccccc
Q 013456          204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGL  232 (442)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~  232 (442)
                      +++.|.+... |.  .+..+.++..|+..
T Consensus       106 Nl~~N~l~~~-p~--vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen  106 NLRFNPLNAE-PR--VIAPLIKLDMLDSP  131 (177)
T ss_pred             ccccCccccc-hH--HHHHHHhHHHhcCC
Confidence            9999987633 22  24445555555533

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=2.6e-05  Score=78.77  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC--C
Q 013456           91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI--P  168 (442)
Q Consensus        91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l--p  168 (442)
                      ..-+|.||+|.+.+....   .+.|..+      ..+||+|+.||+|++.+..+ ..++++++|+.|.+++-.+..-  -
T Consensus       144 g~~LPsL~sL~i~~~~~~---~~dF~~l------c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l  213 (699)
T KOG3665|consen  144 GTMLPSLRSLVISGRQFD---NDDFSQL------CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDL  213 (699)
T ss_pred             hhhCcccceEEecCceec---chhHHHH------hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhH
Confidence            344677777777664321   1113332      24577777777777777666 6677777777777776444322  1


Q ss_pred             ccccccCCCcEEeecCccccccchhh-------hcccccceeeeccccccc
Q 013456          169 KSLGDLHSLETLDMKHTNITSLPKSI-------WKVKTLRHLYLNDIHLQM  212 (442)
Q Consensus       169 ~~~~~l~~L~~L~L~~~~l~~lp~~i-------~~l~~L~~L~l~~~~~~~  212 (442)
                      ..+.+|++|++||+|.......+..+       ..|++||.||.+++.+..
T Consensus       214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            23566777777777776433222111       136777777777665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00012  Score=60.41  Aligned_cols=102  Identities=21%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCccccccchhhhc-ccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG  231 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~  231 (442)
                      ....++|++|.+..++ .+..+..|.+|.+.+|+|+.+-..+.. +++|+.|.+.+|.+....... .+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeee
Confidence            3444555555554443 244555555555555555555444443 344555555555443222111 2334444444444


Q ss_pred             cccCCCC---CchhhhccccCcceeeEE
Q 013456          232 LSIGKKS---PPLNWLENLSDLKNLGLI  256 (442)
Q Consensus       232 ~~~~~~~---~~~~~l~~l~~L~~L~l~  256 (442)
                      .++....   .-...+..+++|+.||+.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehh
Confidence            4333211   011123445555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.50  E-value=7.6e-06  Score=80.79  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=17.6

Q ss_pred             ccCcceeeEEeec-cccchhHHhhcCCcccccceeecccc
Q 013456          247 LSDLKNLGLICNI-ASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       247 l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      +++|+.|.+..+. .+...+......+++|+.|++++|..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4455555544333 23233444444445555555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=1.5e-05  Score=68.84  Aligned_cols=103  Identities=21%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccc--hhhhcccccceee
Q 013456          127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP--KSIWKVKTLRHLY  204 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~  204 (442)
                      .+.+.+.|++.||.+..+. ....++.|++|.|+-|.|..+. .+..+++|+.|+|+.|.|..+-  ..+.++++|+.|+
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3567788888888877663 3456888888888888888773 4778888888888888877553  3466888889998


Q ss_pred             eccccccccccC---CCCCCCCcccccccc
Q 013456          205 LNDIHLQMSVQK---PFVKPSLTNLRTLWG  231 (442)
Q Consensus       205 l~~~~~~~~~~~---~~~~~~l~~L~~L~~  231 (442)
                      +..|...+..+.   ...+.-+++|+.|+-
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhccC
Confidence            888766543221   012445666666653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.00021  Score=61.53  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             hhcccccceecccccccccCCccccccCCCcEEeecCc--ccc-ccchhhhcccccceeeeccccccccccCCCCCCCCc
Q 013456          148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHT--NIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT  224 (442)
Q Consensus       148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  224 (442)
                      .-.+..|++|++.+..++.+ ..+-.|++|++|.++.|  ++. .++.-...+++|++|++++|++...-... .+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence            33455666666666544433 23445778888888888  454 56655666788888888888775311111 234455


Q ss_pred             ccccccccccC
Q 013456          225 NLRTLWGLSIG  235 (442)
Q Consensus       225 ~L~~L~~~~~~  235 (442)
                      +|..|+++.|.
T Consensus       117 nL~~Ldl~n~~  127 (260)
T KOG2739|consen  117 NLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCC
Confidence            55555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.04  E-value=0.0013  Score=54.37  Aligned_cols=83  Identities=18%  Similarity=0.081  Sum_probs=42.8

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcce---EEeCCCcccccc
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE---WTIEEGAMTALE  399 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~~L~  399 (442)
                      +.|.+|.+.+|+++...+..-..+|+|..|.+.+|.+........+..+|+|+.|.+-+++.-..   -......+|+|+
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~  143 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR  143 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence            56666666666666444444444566666666666554433333455666666666666542211   011112356666


Q ss_pred             EEEecc
Q 013456          400 KLEIRN  405 (442)
Q Consensus       400 ~L~l~~  405 (442)
                      .|++.+
T Consensus       144 ~LDF~k  149 (233)
T KOG1644|consen  144 TLDFQK  149 (233)
T ss_pred             Eeehhh
Confidence            666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=7.8e-05  Score=64.53  Aligned_cols=104  Identities=23%  Similarity=0.266  Sum_probs=75.6

Q ss_pred             cccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456          150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL  229 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L  229 (442)
                      .+.+.+.|+..|+.+.++. ...+++.|++|.|+-|.|+.+ ..+..|++|+.|++..|.+...-... -+.++++|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhH
Confidence            4667788899999888772 357899999999999999988 45788999999999999876433221 25677788888


Q ss_pred             cccccCCCCCc-----hhhhccccCcceeeEE
Q 013456          230 WGLSIGKKSPP-----LNWLENLSDLKNLGLI  256 (442)
Q Consensus       230 ~~~~~~~~~~~-----~~~l~~l~~L~~L~l~  256 (442)
                      .+..+.-.+..     ...+.-+++|++||-.
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            77666544322     2235667777777643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.59  E-value=0.0011  Score=33.93  Aligned_cols=18  Identities=50%  Similarity=0.767  Sum_probs=9.6

Q ss_pred             CcEEeecCccccccchhh
Q 013456          177 LETLDMKHTNITSLPKSI  194 (442)
Q Consensus       177 L~~L~L~~~~l~~lp~~i  194 (442)
                      |++||+++|+++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.58  E-value=0.00033  Score=69.10  Aligned_cols=237  Identities=21%  Similarity=0.169  Sum_probs=129.7

Q ss_pred             cccccceeccccc-cccc--CCccccccCCCcEEeecCc--ccccc----chhhhcccccceeeeccccccccccCCCCC
Q 013456          150 KLQLLRYVGLRRT-FIDS--IPKSLGDLHSLETLDMKHT--NITSL----PKSIWKVKTLRHLYLNDIHLQMSVQKPFVK  220 (442)
Q Consensus       150 ~l~~L~~L~L~~~-~i~~--lp~~~~~l~~L~~L~L~~~--~l~~l----p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~  220 (442)
                      .++.|+.|.+.++ .+..  +-.....+++|+.|+++++  .+...    ......+.+|++|+++++............
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4678888888875 3443  3234567788888888873  22211    223345688888988887743222222122


Q ss_pred             CCCcccccccccccCC-C-CCchhhhccccCcceeeEEeeccc-cchhHHhhcCCcccccceeeccccccCCcccccccc
Q 013456          221 PSLTNLRTLWGLSIGK-K-SPPLNWLENLSDLKNLGLICNIAS-LGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSL  297 (442)
Q Consensus       221 ~~l~~L~~L~~~~~~~-~-~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  297 (442)
                      ..+++|+.|.+..+.. . ..+......+++|++|+++.+... ...+.....++++++.|.+.....            
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------  333 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------  333 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------
Confidence            3377888888666663 2 344455667888999999987543 233444455677777766544221            


Q ss_pred             CCcCCCceEEeccccC-----CCcccccCCCceeEEEEeccCCCCCC-cccccCCCCCcEEEeCcccccCcccccCCCCC
Q 013456          298 NNHKELKELYLLGRLP-----GPLKLHELPPNLRIFTLSLSYLSEDP-MPVLGQLRELKALRLFAHSYIGEKMTCGNGGF  371 (442)
Q Consensus       298 ~~~~~L~~l~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  371 (442)
                        +..++.+.+.+...     ........+++++.+.+..+...... ...+..+++|+ ..+..+          ...+
T Consensus       334 --c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~  400 (482)
T KOG1947|consen  334 --CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRS  400 (482)
T ss_pred             --CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccC
Confidence              23333333332211     01112223467777777777643322 23445555552 222111          1223


Q ss_pred             CcccEEEecccCCcceEEeCC--CccccccEEEeccCCCCCC
Q 013456          372 PQLRVLKLWVLKELKEWTIEE--GAMTALEKLEIRNCPKLKM  411 (442)
Q Consensus       372 ~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~c~~l~~  411 (442)
                      ..++.|.+..|...+.-....  ..+..++.+++.+|.....
T Consensus       401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~  442 (482)
T KOG1947|consen  401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL  442 (482)
T ss_pred             CccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence            337788887776544321111  1166677788888776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.37  E-value=0.0018  Score=55.89  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCccc--ccCcccccCCCCCCcccEEEecccCCcceEE--eCCCccccc
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHS--YIGEKMTCGNGGFPQLRVLKLWVLKELKEWT--IEEGAMTAL  398 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L  398 (442)
                      ..|+.+++.++.++.  ...+-.+|+|++|.++.|.  .... +......+|+|++|.+++|. ++.+.  .....+++|
T Consensus        43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceee--cccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence            466666666666552  2244557788888888883  3322 22224455888888888864 22211  122456778


Q ss_pred             cEEEeccCCCCCC----CccCCCCCCCcEEEecccc
Q 013456          399 EKLEIRNCPKLKM----PTELTKLSNLKELTLVKKV  430 (442)
Q Consensus       399 ~~L~l~~c~~l~~----p~~l~~l~~L~~L~l~~n~  430 (442)
                      ..|++.+|.-...    -..+.-+++|+.|+-....
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            8888888876654    1123446666666544433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.36  E-value=0.0012  Score=33.88  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=14.4

Q ss_pred             ccceecccccccccCCccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGD  173 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~  173 (442)
                      +|++|++++|.++.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.33  E-value=0.0025  Score=30.27  Aligned_cols=17  Identities=35%  Similarity=0.503  Sum_probs=10.4

Q ss_pred             CCCcEEEeccccccccC
Q 013456          419 SNLKELTLVKKVLKMKP  435 (442)
Q Consensus       419 ~~L~~L~l~~n~l~~~p  435 (442)
                      ++|++|+|++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46888888888888776

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.05  E-value=0.0004  Score=58.66  Aligned_cols=86  Identities=19%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..++..++||++.+....+-.-++-++.|..|+++-|.+..+|++++.+..+..+++..|+.+..|...++.+++++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34788899999988777777777888889999999888888999998888999999998888899999999999999988


Q ss_pred             cccccc
Q 013456          206 NDIHLQ  211 (442)
Q Consensus       206 ~~~~~~  211 (442)
                      .++.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            887653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.63  E-value=0.0066  Score=32.55  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             CCCCcEEEeccccccccCCCCCC
Q 013456          418 LSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       418 l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      +++|+.|++++|.|+.+|+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46899999999999999998775

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.63  E-value=0.0066  Score=32.55  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             CCCCcEEEeccccccccCCCCCC
Q 013456          418 LSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       418 l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      +++|+.|++++|.|+.+|+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46899999999999999998775

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.61  E-value=0.0086  Score=28.39  Aligned_cols=16  Identities=50%  Similarity=0.843  Sum_probs=7.0

Q ss_pred             CCcEEeecCccccccc
Q 013456          176 SLETLDMKHTNITSLP  191 (442)
Q Consensus       176 ~L~~L~L~~~~l~~lp  191 (442)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.0011  Score=55.00  Aligned_cols=85  Identities=20%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc-cccCCCCCCcccEEEecccCCcceEE-eCCCccccccEE
Q 013456          324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK-MTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKL  401 (442)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L  401 (442)
                      .++.++-+++.+..+....+..++.++.|.+.+|...+.. .....+..++|+.|++++|+.+++-- .....+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            5677777777776666667777788888888777654432 22222357777888888777665421 122356777777


Q ss_pred             EeccCCC
Q 013456          402 EIRNCPK  408 (442)
Q Consensus       402 ~l~~c~~  408 (442)
                      .|.+-+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            7766543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.99  E-value=0.059  Score=42.28  Aligned_cols=79  Identities=14%  Similarity=0.266  Sum_probs=37.5

Q ss_pred             hcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccchh-hhcccccce
Q 013456          126 RGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRH  202 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~  202 (442)
                      .++++|+.+.+.. .+..++. .|.+++.|+.+.+..+ +..++. .+..+..|+.+.+.. .+..++.. +..+++|+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            4466667666664 3444433 4666667777777653 555533 355666677777754 44444333 334677777


Q ss_pred             eeecc
Q 013456          203 LYLND  207 (442)
Q Consensus       203 L~l~~  207 (442)
                      +.+..
T Consensus        86 i~~~~   90 (129)
T PF13306_consen   86 IDIPS   90 (129)
T ss_dssp             EEETT
T ss_pred             cccCc
Confidence            77654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.98  E-value=0.098  Score=40.99  Aligned_cols=109  Identities=16%  Similarity=0.160  Sum_probs=41.7

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCccccccEE
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEKL  401 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  401 (442)
                      .+|+.+.+.. .+.......|..+++|+.+.+.++ +. ......+..+++|+.+.+.+  .+..+.. ....+++|+.+
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc--ccccccccccccccccccc
Confidence            3445555432 222222334555666666666543 22 22233355565666666643  2223322 22345666666


Q ss_pred             EeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCC
Q 013456          402 EIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAW  439 (442)
Q Consensus       402 ~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~  439 (442)
                      .+... ...+ ...+.++ +|+.+.+.. .+..+++..|
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F  122 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF  122 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence            66543 2333 4455555 666666665 5555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.58  E-value=0.062  Score=28.64  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=12.6

Q ss_pred             CCCcEEeecCccccccchhh
Q 013456          175 HSLETLDMKHTNITSLPKSI  194 (442)
Q Consensus       175 ~~L~~L~L~~~~l~~lp~~i  194 (442)
                      ++|++|+|++|.++.+|...
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.58  E-value=0.062  Score=28.64  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=12.6

Q ss_pred             CCCcEEeecCccccccchhh
Q 013456          175 HSLETLDMKHTNITSLPKSI  194 (442)
Q Consensus       175 ~~L~~L~L~~~~l~~lp~~i  194 (442)
                      ++|++|+|++|.++.+|...
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.23  E-value=0.0069  Score=50.29  Aligned_cols=37  Identities=24%  Similarity=0.172  Sum_probs=17.2

Q ss_pred             CCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456          347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (442)
                      ++|+.|+|++|.-.++.....+..+++|+.|.+.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4555555555543332222224445555555555433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.87  E-value=0.14  Score=27.19  Aligned_cols=19  Identities=37%  Similarity=0.445  Sum_probs=16.7

Q ss_pred             CCCcEEEeccccccccCCC
Q 013456          419 SNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       419 ~~L~~L~l~~n~l~~~p~~  437 (442)
                      ++|+.|++++|+++.+|+-
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        2 PSLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             cccceeecCCCccccCccc
Confidence            4689999999999999984

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.50  E-value=0.032  Score=47.55  Aligned_cols=63  Identities=17%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT  188 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~  188 (442)
                      +.++.|..|+++.+.+..+|..++.+..++.+++..|.....|.+++..++++++++.++.+.
T Consensus        62 s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   62 SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence            446788899999999999999999999999999999999999999999999999999998765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.41  E-value=0.0073  Score=58.67  Aligned_cols=14  Identities=21%  Similarity=0.363  Sum_probs=7.5

Q ss_pred             cccEEEeccCCCCC
Q 013456          397 ALEKLEIRNCPKLK  410 (442)
Q Consensus       397 ~L~~L~l~~c~~l~  410 (442)
                      .++.+.++.+++..
T Consensus       433 ~~~~~~l~~~~~~~  446 (478)
T KOG4308|consen  433 SLKALRLSRNPITA  446 (478)
T ss_pred             cchhhhhccChhhh
Confidence            55555555555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.73  E-value=0.73  Score=24.55  Aligned_cols=19  Identities=37%  Similarity=0.503  Sum_probs=14.9

Q ss_pred             CCCCcEEEeccccccccCC
Q 013456          418 LSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       418 l~~L~~L~l~~n~l~~~p~  436 (442)
                      +.+|++|++++|+|+.+..
T Consensus         1 L~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        1 LTNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CCccCEEECCCCccceecC
Confidence            4678899999998877754

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.62  E-value=0.6  Score=24.16  Aligned_cols=15  Identities=27%  Similarity=0.364  Sum_probs=8.9

Q ss_pred             CCCCcEEEecccccc
Q 013456          418 LSNLKELTLVKKVLK  432 (442)
Q Consensus       418 l~~L~~L~l~~n~l~  432 (442)
                      +++|++|+|++|+|+
T Consensus         1 ~~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    1 NPNLETLDLSNNQIT   15 (24)
T ss_dssp             -TT-SEEE-TSSBEH
T ss_pred             CCCCCEEEccCCcCC
Confidence            367788888888764

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 54/242 (22%), Positives = 82/242 (33%), Gaps = 34/242 (14%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
              L+L  V  P  P+   +L  L+++ +    +  +P ++     LETL +    + +L
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL 142

Query: 191 PKSIWKVKTLRHLYLND----IHLQMSVQKPFVKPSLTNLRTLWGLSIGK---KSPPLNW 243
           P SI  +  LR L +        L   +           L  L  L +     +S P   
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-AS 201

Query: 244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF-YVPSDLAIGSLNNHKE 302
           + NL +LK+L +  +   L  +   I  L  LE L LR        P     G       
Sbjct: 202 IANLQNLKSLKIRNS--PLSALGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAP--- 254

Query: 303 LKELYLLGRLPGPLKLHELPP------NLRIFTLS----LSYLSEDPMPVLGQLRELKAL 352
           LK L L         L  LP        L    L     LS L       + QL     +
Sbjct: 255 LKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL----IAQLPANCII 306

Query: 353 RL 354
            +
Sbjct: 307 LV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 55/313 (17%), Positives = 99/313 (31%), Gaps = 57/313 (18%)

Query: 130 LLRVLDLEDVYKPVLPETIGKLQL--LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI 187
             ++            + +          + LR   +   P     L  L+ + +    +
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 188 TSLPKSIWKVKTLRHLYLNDIHLQ---MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL 244
             LP ++ +   L  L L    L+    S+        L  LR L               
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIAS------LNRLREL--------------- 155

Query: 245 ENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELK 304
            ++     L  +    +    +   QGL +L+SLRL       +P+   I +L N   LK
Sbjct: 156 -SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IANLQN---LK 209

Query: 305 ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM 364
            L +         L  L P                   +  L +L+ L L   + +    
Sbjct: 210 SLKIRNS-----PLSALGPA------------------IHHLPKLEELDLRGCTAL-RNY 245

Query: 365 TCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKE 423
               GG   L+ L L     L    ++   +T LEKL++R C  L   P+ + +L     
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 424 LTLVKKVLKMKPE 436
           + +   +     +
Sbjct: 306 ILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 40/258 (15%)

Query: 187 ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLEN 246
           + S            +LY        S         L+  +  +     +         N
Sbjct: 1   MGSSHHHHHHSSGRENLYFQG-----STALRPYHDVLSQWQRHYNADRNRWHSAWR-QAN 54

Query: 247 LSDLKNLGLICNIASLGKITNLIQGLTS--LESLRLRSINDFYVPSDLAIGSLNNHKELK 304
            ++ +         +L    +L++  T     +L LRS+     P       L++   L+
Sbjct: 55  SNNPQIETRTGR--ALKATADLLEDATQPGRVALELRSVPLPQFPD--QAFRLSH---LQ 107

Query: 305 ELYLLGRLPGPLKLHELPP------NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHS 358
            + +         L ELP        L   TL+ + L   P   +  L  L+ L + A  
Sbjct: 108 HMTIDA-----AGLMELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACP 161

Query: 359 YIGE--------KMTCGNGGFPQLRVLKLWV--LKELKEWTIEEGAMTALEKLEIRNCPK 408
            + E          +  + G   L+ L+L    ++ L         +  L+ L+IRN P 
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRNSPL 218

Query: 409 LKMPTELTKLSNLKELTL 426
             +   +  L  L+EL L
Sbjct: 219 SALGPAIHHLPKLEELDL 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 66/336 (19%), Positives = 109/336 (32%), Gaps = 34/336 (10%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIP-KSL 171
            N L+ +       Y  L  LD+       L PE   KL +L+ + L+   +  +  K+ 
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 172 GDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230
               +L  L +   +I  +      K K L  L L+   L  +     V   L NL+ L 
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELL 151

Query: 231 GLS---IGKKSPPLNWLENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDF 286
            LS   I         +   S LK L L    I            +  L  L L +    
Sbjct: 152 -LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF--SPGCFHAIGRLFGLFLNN-VQL 207

Query: 287 YVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPV 342
                  +     +  ++ L L    L        L     NL +  LS + L+      
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 343 LGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLE 402
              L +L+   L  ++ I    +    G   +R L L   +   + +I   ++  ++   
Sbjct: 268 FAWLPQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNL--KRSFTKQSISLASLPKIDDFS 324

Query: 403 IRNCPKLKM------------PTELTKLSNLKELTL 426
            +    L+                 T L NLK L+L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 51/290 (17%), Positives = 85/290 (29%), Gaps = 33/290 (11%)

Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQM 212
                     +  +P  L    ++  L++ H  +  L   +  +   L  L +    +  
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 213 SVQKPFVKPSLTNLRTLW----GLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITN 267
              +      L  L+ L      LS              ++L  L L+ N I  +    N
Sbjct: 64  LEPELCQ--KLPMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMSNSIQKI--KNN 115

Query: 268 LIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPP 323
                 +L +L L S N            L N   L+EL L    +  L           
Sbjct: 116 PFVKQKNLITLDL-SHNGLSSTKLGTQVQLEN---LQELLLSNNKIQALKSEELDIFANS 171

Query: 324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE---KMTCGNGGFPQLRVLKLW 380
           +L+   LS + + E        +  L  L L  +  +G    +  C       +R L L 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 381 --VLKELKEWTIEEGAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTL 426
              L      T      T L  L++     L +        L  L+   L
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFL 279

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 60/327 (18%), Positives = 108/327 (33%), Gaps = 43/327 (13%)

Query: 131 LRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFID-SIPKSLGD---LHSLETLDMKHT 185
           L+ L+L     K   P     +  L  + L    +  S+ + L       S+  L + ++
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 186 NITSLPKSI---WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPL 241
            +++   +     K   L  L L+  +L +     F    L  L   + L     +    
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFF-LEYNNIQHLFS 289

Query: 242 NWLENLSDLKNLGLICNIASLGKITNLI--------QGLTSLESLRLRSINDFYVPSDLA 293
           + L  L +++ L L  +          +        Q L  LE L +   ND      + 
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM-EDNDI---PGIK 345

Query: 294 IGSLNNHKELKELYL------LGRLPGPLKLHELPPNLRIFTLSLSY--LSEDPMPVLGQ 345
                    LK L L      L  L     +      L    L+L+   +S+        
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH--ILNLTKNKISKIESDAFSW 403

Query: 346 LRELKALRLFAHSYIGEKMTCGN-GGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKLE 402
           L  L+ L L   + IG+++T     G   +  + L      +L   +     + +L++L 
Sbjct: 404 LGHLEVLDL-GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL--VPSLQRLM 460

Query: 403 IRNCP---KLKMPTELTKLSNLKELTL 426
           +R          P+    L NL  L L
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 46/266 (17%), Positives = 81/266 (30%), Gaps = 39/266 (14%)

Query: 116 GNLLKMVI---AIRGYRLLRVLDLED-VYKPVLPETIGKLQLLRYVGLRR---TFIDSIP 168
            N +   +     RG   +  + L    Y  +   +   +  L+ + LRR     +DS P
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 169 KSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
                L +L  LD+ + NI ++    +  ++ L  L L   +L                 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---------------- 517

Query: 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDF 286
            LW         P+ +L+ LS L  L L  N    +     + + L  L+ + L   N+ 
Sbjct: 518 RLW--KHANPGGPIYFLKGLSHLHILNLESNGFDEI--PVEVFKDLFELKIIDLGL-NNL 572

Query: 287 YVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPV 342
              + L     NN   LK L L    +  +           NL    +  +         
Sbjct: 573 ---NTLPASVFNNQVSLKSLNLQKNLITSVE-KKVFGPAFRNLTELDMRFNPFDCTC-ES 627

Query: 343 LGQLRELKALRLFAHSYIGEKMTCGN 368
           +                +     C  
Sbjct: 628 IAWFVNWINETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 52/263 (19%), Positives = 92/263 (34%), Gaps = 33/263 (12%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLED---VYKPVLPETIGKLQL--LRYVGLRRTFIDSI- 167
            N +  +      G   L+ L L +     + +  ET   L    L  + L +  I  I 
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 168 PKSLGDLHSLETLDMKHTNITSL--PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTN 225
             +   L  LE LD+    I      +    ++ +  +YL+        +  F    + +
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPS 455

Query: 226 LRTLW--GLSIGKKSPPLNWLENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRS 282
           L+ L    +++       +  + L +L  L L   NIA++    ++++GL  LE L L+ 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI--NDDMLEGLEKLEILDLQH 513

Query: 283 IN----DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNL-----RIFTLSLS 333
            N      +      I  L     L  L L           E+P  +      +  + L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLES-----NGFDEIPVEVFKDLFELKIIDLG 568

Query: 334 Y--LSEDPMPVLGQLRELKALRL 354
              L+  P  V      LK+L L
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 22/131 (16%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDL---------EDVYKPVLPETIGKLQLLRYVGLRR 161
                  L K          L +LDL         +          +  L  L  + L  
Sbjct: 496 NDDMLEGLEK----------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 162 TFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKT-LRHLYLNDIHLQMSVQKPFV 219
              D I  +   DL  L+ +D+   N+ +LP S++  +  L+ L L    +  SV+K   
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVF 604

Query: 220 KPSLTNLRTLW 230
            P+  NL  L 
Sbjct: 605 GPAFRNLTELD 615

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 44/315 (13%), Positives = 89/315 (28%), Gaps = 46/315 (14%)

Query: 144 LPETIGKLQLLRYVGLR-RTFIDSIPKSLGDLHSLETLDMKH----------TNITSLPK 192
              +   L+ L  V L     +  +P  L DL  L++L++             + T L  
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 193 SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW----GLSIGKKSPPLNWLENLS 248
                  ++  Y+   +L+           +  L  L      +        L       
Sbjct: 543 DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH------LEAFGTNV 595

Query: 249 DLKNLGLICNIASLGKI-TNLIQGLTSLESLRLRSINDFY-VPSDLAIGSLNNHKELKEL 306
            L +L L  N   + +I  +       +E L     N    +P+     S+     +  +
Sbjct: 596 KLTDLKLDYN--QIEEIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYV---MGSV 649

Query: 307 YL----LGRLP-GPLKLHELPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRL----- 354
                 +G          +    +   T++LSY  + + P  +      +  + L     
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 355 -FAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKLEIRNCPKLKM 411
                   +           L  + L    L  L +       +  L  +++        
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYLSNMDVSYNCFSSF 768

Query: 412 PTELTKLSNLKELTL 426
           PT+    S LK   +
Sbjct: 769 PTQPLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 39/278 (14%), Positives = 77/278 (27%), Gaps = 24/278 (8%)

Query: 163 FIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPS 222
               +P ++G L  L+ L     + T   +     +    +     H      K      
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394

Query: 223 LTNLRTLWGLSIGKKSPPLNW---LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLR 279
              L     L       P       ++   LK+  +      +  I+  IQ LT L+ + 
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 280 LRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDP 339
             + + F   +   I                          L  +L    L         
Sbjct: 455 FAN-SPF---TYDNIAVDWEDANSDYAKQYENEELS--WSNL-KDLTDVELYNCPNMTQL 507

Query: 340 MPVLGQLRELKALRL--------FAHSYIGEKMTCGNGGFPQLRVLKLWV--LKEL-KEW 388
              L  L EL++L +                ++       P++++  +    L+E     
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 389 TIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
           ++    M  L  L+  +  K++          L +L L
Sbjct: 568 SL--QKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKL 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 28/226 (12%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHT-------NITSLPKSIWKV 197
              +   Q L    L +  I+  P  +  +     + +K T        IT + K+I ++
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 198 KTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLIC 257
             L+ +Y  +          +   ++         +   ++  L+   NL DL ++ L  
Sbjct: 448 TKLQIIYFANSPF------TYDNIAVDWEDANSDYAKQYENEELS-WSNLKDLTDVEL-Y 499

Query: 258 NIASLGKITNLIQGLTSLESL-----RLRSINDFYVPSDLAIGSLNNHKELKELYL---- 308
           N  ++ ++ + +  L  L+SL     R  S               +   +++  Y+    
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 309 LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL 354
           L   P    L ++   L +     + +    +   G   +L  L+L
Sbjct: 560 LEEFPASASLQKM-VKLGLLDCVHNKVRH--LEAFGTNVKLTDLKL 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 41/352 (11%), Positives = 111/352 (31%), Gaps = 66/352 (18%)

Query: 129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFID-------SIPKSLGDLHSLETLD 181
           + L + DL        PE +  ++    + L+ T I         I K++  L  L+ + 
Sbjct: 396 QRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 182 MKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPL 241
             ++  T    ++           +      + +  +    L +L  +   +    +   
Sbjct: 455 FANSPFTYDNIAV----DWEDANSDYAKQYENEELSWSN--LKDLTDVELYNCPNMTQLP 508

Query: 242 NWLENLSDLKNLGLICN--------IASLGKITNLIQGLTSLESLRLRSINDF-YVPSDL 292
           ++L +L +L++L + CN         A   ++ +       ++   +   N+    P+  
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASA 567

Query: 293 AIGSLNNHKELKELYL----LGRLP--GPL-----------KLHELPPNL-----RIFTL 330
           ++  +     L  L      +  L   G             ++ E+P +      ++  L
Sbjct: 568 SLQKMVK---LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 331 SLSY--LSEDPMPV-LGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK---- 383
             S+  L   P       +  + ++   +++ IG +    +      + +    +     
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDF-SYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 384 ELKEWTIEE-GAMTALEKLEIRNC--------PKLKMPTELTKLSNLKELTL 426
           E++++  E     + +  + + N                       L  + L
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 34/278 (12%), Positives = 82/278 (29%), Gaps = 26/278 (9%)

Query: 165 DSIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSL 223
           D     L +   +  L +        +P +I ++  L+ L            + F    L
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET-VSGRLFGDEEL 371

Query: 224 TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQG-LTSLESLRLR 281
           T   +       +      +L+    L    L+ + I    ++  + +    SL+  ++ 
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSY--LSEDP 339
           ++ +       AI  L     L+ +Y                 +     +  Y    E+ 
Sbjct: 432 NLTNRITFISKAIQRLTK---LQIIYFANS-----PFTYDNIAVDWEDANSDYAKQYENE 483

Query: 340 MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW---------VLKELKEWTI 390
                 L++L  + L+    + + +       P+L+ L +          +  +      
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 391 EEGAMTALEKLEIRNC--PKLKMPTELTKLSNLKELTL 426
           +E     ++   +      +      L K+  L  L  
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 44/300 (14%), Positives = 87/300 (29%), Gaps = 70/300 (23%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHL 203
             ++ K+  L  +      +  +  + G    L  L + +  I  +P+        +  L
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLS------IGKKSPPLNWLENLSDLKNLGLIC 257
             +   L+  +   F   S+  + ++   S       G+            +   + L  
Sbjct: 625 GFSHNKLK-YIPNIFNAKSVYVMGSVD-FSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 258 N-IASLGKITNLIQGLTSLESLRLRSINDF-YVPSDL---AIGSLNNHKELKELYL---- 308
           N I      T L    + + ++ L + N    +P +      G+  N   L  + L    
Sbjct: 683 NEIQKF--PTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 309 LGRLPGPLKLHELPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRLFAHSYIGEKMTC 366
           L  L    +   LP  L    + +SY   S  P        +LKA  +            
Sbjct: 740 LTSLSDDFRATTLP-YLS--NMDVSYNCFSSFP-TQPLNSSQLKAFGI------------ 783

Query: 367 GNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
                           + L++W                       PT +T   +L +L +
Sbjct: 784 -------RHQRDAEGNRILRQW-----------------------PTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 30/228 (13%)

Query: 148 IGKLQLLRYVGLRRTFIDSIPKSLGD------LHSLETLDMKHTNITSLPKSI-WKVKTL 200
              + ++  V      I S  +++          +  T+ + +  I   P  +      +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 201 RHLYLND-----IHLQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPLNWLENLSDLKN 252
             + L++     I       K     +   L T+  L    +   S        L  L N
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID-LRFNKLTSLSDDF-RATTLPYLSN 757

Query: 253 LGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAI--GSLNNHKELKELYL-- 308
           + +  N              + L++  +R   D      L      +     L +L +  
Sbjct: 758 MDVSYN--CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 309 --LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL 354
             + ++       +L P L I  ++ +      +  +    E     L
Sbjct: 816 NDIRKVD-----EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 24/183 (13%), Positives = 44/183 (24%), Gaps = 46/183 (25%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDL--------EDVYKPVLPETIGKLQLLRYVGLRRT 162
           P   F               +  + L         +              LL  + LR  
Sbjct: 689 PTELFATGSP----------ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 163 FIDSIPKSL--GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVK 220
            + S+        L  L  +D+ +   +S P        L+   +               
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR-------------- 784

Query: 221 PSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQG-LTSLESLR 279
               + R   G  I ++ P    +     L  L +  N      I  + +     L  L 
Sbjct: 785 ----HQRDAEGNRILRQWP--TGITTCPSLIQLQIGSN-----DIRKVDEKLTPQLYILD 833

Query: 280 LRS 282
           +  
Sbjct: 834 IAD 836

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 45/319 (14%), Positives = 98/319 (30%), Gaps = 50/319 (15%)

Query: 143 VLPETIGKLQLLRYVGLRR-TFIDSIPKSLGDLHSLETLDMKHTNITSLPK--------- 192
                   L+ L  V +     +  +P  L  L  ++ +++      S  +         
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 193 SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG----KKSPPLNWLENLS 248
                + ++ +Y+   +L+ +        SL  ++ L  L       +   P     +  
Sbjct: 300 DAPVGEKIQIIYIGYNNLK-TFPVE---TSLQKMKKLGMLECLYNQLEGKLPA--FGSEI 353

Query: 249 DLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDF-YVPSDLAIGSLNNHKELKEL 306
            L +L L    I  +    N       +E+L     N   Y+P+     S++    +  +
Sbjct: 354 KLASLNLAYNQITEI--PANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSV---MSAI 407

Query: 307 YL----LGRLPGPLKLHELPPNLRIFT----LSLSY--LSEDPMPVLGQLRELKALRLFA 356
                 +G +        L P          ++LS   +S+ P  +      L ++ L  
Sbjct: 408 DFSYNEIGSVD-GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 357 ---HSYIGEKMTCGNGGFPQLRVLK-LWV----LKELKEWTIEEGAMTALEKLEIRNCPK 408
                     +   N  F    +L  + +    L +L +       +  L  +++     
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD-DFRATTLPYLVGIDLSYN-S 524

Query: 409 LK-MPTELTKLSNLKELTL 426
               PT+    S LK   +
Sbjct: 525 FSKFPTQPLNSSTLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 44/319 (13%), Positives = 94/319 (29%), Gaps = 55/319 (17%)

Query: 140 YKPVLPETIGKLQLLRYVGLRRT---FIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK 196
           Y+    +   +      +           SI KS         +     NIT + K++ +
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204

Query: 197 VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLI 256
           +  LR  Y+ +                            K        +NL DL ++ + 
Sbjct: 205 LTKLRQFYMGNSPFV-----AENICEAWENENSEYAQQYKTEDLK--WDNLKDLTDVEV- 256

Query: 257 CNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDL-----AIGSLNNHKELKELYL--- 308
            N  +L K+   ++ L  ++ + + + N       L     A+      ++++ +Y+   
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 309 -LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCG 367
            L   P    L ++   L +     + L     P  G   +L +L L             
Sbjct: 316 NLKTFPVETSLQKM-KKLGMLECLYNQLEGKL-PAFGSEIKLASLNLA-----------Y 362

Query: 368 N----------GGFPQLRVLKLWV--LKELKEWTIEEGAMTALEKL--------EIRNCP 407
           N          G   Q+  L      LK +     +  +++ +  +         +    
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 408 KLKMPTELTKLSNLKELTL 426
              +     K  N+  + L
Sbjct: 422 FDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 40/298 (13%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 147 TIGKLQLLRYVGLRRT-FIDSIPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTL 200
           ++     +  + L        +P ++G L  LE L +             PK I    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA 260
                  +H Q +      +   ++L      S  ++               +G + N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-- 193

Query: 261 SLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPL-KLH 319
           ++  ++  +  LT L    + + + F       I     ++  +              L 
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGN-SPF---VAENICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 320 ELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP------- 372
           +L  ++ ++      L++ P   L  L E++ + +  +  I  +    +           
Sbjct: 250 DL-TDVEVYNCPN--LTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 373 QLRVLKLWV--LKEL-KEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTL 426
           +++++ +    LK    E ++    M  L  LE     +L+           L  L L
Sbjct: 306 KIQIIYIGYNNLKTFPVETSL--QKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNL 360

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 73/302 (24%)

Query: 144 LPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKV-KTLRH 202
           +  ++ K++ L  +      ++    + G    L +L++ +  IT +P +     + + +
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 203 LYLNDIHLQMSVQKPFVKPSLTNLRTLW-------GLSIGKKSPPLNWLENLSDLKNLGL 255
           L      L+  +   F   S++ +  +         +      P         ++ ++ L
Sbjct: 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 256 ICN-IASLGKITNLIQGLTSLESLRLRS------INDFYVPSDLAIGSLNNHKELKELYL 308
             N I+       L    + L S+ L          +     +    +      L  + L
Sbjct: 441 SNNQISKF--PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL---LTSIDL 495

Query: 309 ----LGRLPGPLKLHELPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRLFAHSYIGE 362
               L +L    +   LP  L    + LSY   S+ P         LK   +        
Sbjct: 496 RFNKLTKLSDDFRATTLP-YLV--GIDLSYNSFSKFP-TQPLNSSTLKGFGI-------- 543

Query: 363 KMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLK 422
                               + L+EW                       P  +T   +L 
Sbjct: 544 -----------RNQRDAQGNRTLREW-----------------------PEGITLCPSLT 569

Query: 423 EL 424
           +L
Sbjct: 570 QL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 29/236 (12%), Positives = 68/236 (28%), Gaps = 42/236 (17%)

Query: 148 IGKLQLLRYV--------GLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSI-WKVK 198
              + ++  +         +     D +  +     ++ ++++ +  I+  PK +     
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 199 TLRHLYL--NDIHLQMSVQKPFVKPSLTNLRTLWGLSIG----KKSPPLNWLENLSDLKN 252
            L  + L  N +             +  N   L  + +      K         L  L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 253 LGLICNIASLGKITNLIQGLTSLESLRLRSINDF-------YVPSDLAIGSLNNHKELKE 305
           + L  N  S  K        ++L+   +R+  D          P    I    +   L +
Sbjct: 518 IDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPS---LTQ 570

Query: 306 LYL----LGRLPGPLKLHELPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRLF 355
           L +    + ++       ++ PN+    L +         +  +    E     LF
Sbjct: 571 LQIGSNDIRKVN-----EKITPNIS--VLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 25/213 (11%), Positives = 49/213 (23%), Gaps = 50/213 (23%)

Query: 109 GKPAGEFGNLLKMVIAIRGYRLLRVLDLED--------VYKPVLPETIGKLQLLRYVGLR 160
             P   F               L  ++L                 E      LL  + LR
Sbjct: 447 KFPKELFSTG----------SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 161 RTFIDSIPKSL--GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPF 218
              +  +        L  L  +D+ + + +  P       TL+   + +           
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA------- 549

Query: 219 VKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQG-LTSLES 277
                      W   I               L  L +  N      I  + +    ++  
Sbjct: 550 ---QGNRTLREWPEGIT----------LCPSLTQLQIGSN-----DIRKVNEKITPNISV 591

Query: 278 LRLRSINDFYVPSDLAIGSLNNHKELKELYLLG 310
           L ++  N       + +  +  + E     L  
Sbjct: 592 LDIKD-NPN---ISIDLSYVCPYIEAGMYMLFY 620

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 6e-14
 Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 69/297 (23%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
           +  L + D     LP    +L+ L    +    + S+P     L  L       T++ +L
Sbjct: 63  ITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 119

Query: 191 PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL 250
           P        L  L++    L        +      L+ L        S P       S+L
Sbjct: 120 PSG------LCKLWIFGNQLT------SLPVLPPGLQELSVSDNQLASLP----ALPSEL 163

Query: 251 KNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG 310
             L    N     ++T+L    + L+ L +       +P+  +        EL +L+   
Sbjct: 164 CKLWAYNN-----QLTSLPMLPSGLQELSVSDNQLASLPTLPS--------ELYKLWAYN 210

Query: 311 -RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNG 369
            RL     L  LP  L+   +S + L+  P  +  +L+EL                    
Sbjct: 211 NRLT---SLPALPSGLKELIVSGNRLTSLP-VLPSELKELMVSGNR-------------- 252

Query: 370 GFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
                       L  L          + L  L +      ++P  L  LS+   + L
Sbjct: 253 ------------LTSLPML------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 5e-11
 Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 55/274 (20%)

Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS 213
              + +  + + ++P  L     + TL +   N+TSLP        LR L ++   L   
Sbjct: 42  NAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALP---PELRTLEVSGNQLT-- 94

Query: 214 VQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLICNIASLGKITNLIQGL 272
                +      L  L   S       L  L  L S L  L +  N     ++T+L    
Sbjct: 95  ----SLPVLPPGLLELSIFSNP-----LTHLPALPSGLCKLWIFGN-----QLTSLPVLP 140

Query: 273 TSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP---NLRIFT 329
             L+ L +       +P+  +        EL +L+         +L  LP     L+  +
Sbjct: 141 PGLQELSVSDNQLASLPALPS--------ELCKLWAYN-----NQLTSLPMLPSGLQELS 187

Query: 330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV--LKELKE 387
           +S + L+  P  +  +L +L A           ++T        L+ L +    L  L  
Sbjct: 188 VSDNQLASLP-TLPSELYKLWAYNN--------RLTSLPALPSGLKELIVSGNRLTSLPV 238

Query: 388 WTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNL 421
                   + L++L +       +P   + L +L
Sbjct: 239 ------LPSELKELMVSGNRLTSLPMLPSGLLSL 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 9/134 (6%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
           L+ L +       LP     L  L    + R  +  +P+SL  L S  T++++   ++  
Sbjct: 243 LKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299

Query: 191 PKSIWKVKTLRHLYLNDI--HLQMSVQKPFVKPSLTNLRTLW--GLSIGKKSPPLNW--L 244
                +  T    Y   I          P    +L      W      G+ +P   W   
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

Query: 245 ENLSDLKNLGLICN 258
               +     L  +
Sbjct: 360 GQEDNADAFSLFLD 373

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 70/331 (21%), Positives = 119/331 (35%), Gaps = 34/331 (10%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSI-PKSL 171
            N LK++   +   +  L+ LDL       +  +    L  L  + L    I S  P S 
Sbjct: 41  FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100

Query: 172 GDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230
             L SLE L    T + SL    I ++ TL+ L +    +  S + P    +LTNL  + 
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVD 159

Query: 231 GLS---IGKKSPPLNWLENLSDLKNLGLICNIA--SLGKITNLIQGLTSLESLRLRSIND 285
            LS   I  ++  +N L+ L +   + L  +++   +  I +       L  L LR   +
Sbjct: 160 -LSYNYI--QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 286 FYVPSDLAIGSLNNHKELKELYLL-GRLPGPLKLHELPP-------NLRIFTLSLSY--L 335
                   + +L     L    L+ G       L    P       ++ I    L+Y   
Sbjct: 217 SSNIMKTCLQNLAG---LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 336 SEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAM 395
             D +     L  + A+ L A   I  K         + + L +   + LK+       +
Sbjct: 274 FSDDIVKFHCLANVSAMSL-AGVSI--KYLEDVPKHFKWQSLSIIRCQ-LKQ--FPTLDL 327

Query: 396 TALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
             L+ L +    K  +  +   L +L  L L
Sbjct: 328 PFLKSLTLTMN-KGSISFKKVALPSLSYLDL 357

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 22/231 (9%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRR---TFIDSIPKSLGDLHSLETLDMKHTNI 187
           L+ L L    K  +      L  L Y+ L R   +F      S    +SL  LD+     
Sbjct: 330 LKSLTLTMN-KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 188 TSLPKSIWKVKTLRHLYLNDIHL-QMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLE 245
             +  +   ++ L+HL      L +++    F   SL  L  L  +S    K        
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLD-ISYTNTKIDFDGIFL 445

Query: 246 NLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE 305
            L+ L  L +  N      ++N+    T+L  L L           ++ G  +    L+ 
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK-CQL---EQISWGVFDTLHRLQL 501

Query: 306 LYL----LGRLPGPLKLHELPPNLRIFTLS---LSYLSEDPMPVLGQLREL 349
           L +    L  L      ++L  +L     S   +             L   
Sbjct: 502 LNMSHNNLLFLD-SSHYNQL-YSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 60/331 (18%), Positives = 112/331 (33%), Gaps = 33/331 (9%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSI--PKS 170
           GN ++     +  G   L  L   +     +    IG+L  L+ + +   FI S   P  
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 171 LGDLHSLETLDMKHTNITSLPKSI-----WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTN 225
             +L +L  +D+ +  I ++  +         +    L ++   +     + F    L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208

Query: 226 LRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKIT----NLIQGLTSL--ESL 278
           L  L G            L+NL+ L    LI         +     ++++GL  +  +  
Sbjct: 209 LT-LRGNFNSSNIMKTC-LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 279 RLRSINDFYVPSDLAIGSLNNHKELKELYLLG-RLPGPLKLHELPPNLRIFTLSLSYLSE 337
           RL   NDF           +    +  + L G  +     L ++P + +  +LS+     
Sbjct: 267 RLTYTNDFSDDI----VKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQL 319

Query: 338 DPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEGAM 395
              P L  L  LK+L L   +     ++      P L  L L    L      +  +   
Sbjct: 320 KQFPTLD-LPFLKSLTL---TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 396 TALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
            +L  L++     + M      L  L+ L  
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 22/243 (9%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSI---PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLR 201
           P  +  L  +     R T+ +           L ++  + +   +I  L   + K    +
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQ 310

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IA 260
            L +    L+   Q P +   L  L++L  L++ K S     +  L  L  L L  N ++
Sbjct: 311 SLSIIRCQLK---QFPTL--DLPFLKSLT-LTMNKGSISFKKV-ALPSLSYLDLSRNALS 363

Query: 261 SLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPL 316
             G  +    G  SL  L L S N   + S     +    +EL+ L      L R+    
Sbjct: 364 FSGCCSYSDLGTNSLRHLDL-SFNGAIIMS----ANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 317 KLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRV 376
               L   L    +S +    D   +   L  L  L++  +S+    ++        L  
Sbjct: 419 AFLSLE-KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 377 LKL 379
           L L
Sbjct: 478 LDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 166 SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTN 225
           S+   +  + ++ T       ++ +P  I    + +++ L+   L++         S +N
Sbjct: 3   SLNPCIEVVPNI-TYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKI-----LKSYSFSN 54

Query: 226 LRTLWGLSIGK---KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLR 281
              L  L + +   ++        L  L NL L  N I S         GLTSLE+L   
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--SPGSFSGLTSLENLVAV 112

Query: 282 SINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSE 337
                       IG L     LK+L +    +     P     L  NL    LS +Y+  
Sbjct: 113 E-TKLASLESFPIGQLIT---LKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQT 167

Query: 338 DPMPVLGQLRELKALRL 354
             +  L  LRE   + L
Sbjct: 168 ITVNDLQFLRENPQVNL 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 64/321 (19%), Positives = 125/321 (38%), Gaps = 47/321 (14%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
            N L  +  ++    L  + + +     +   +  L  L  + L    I  I   L +L 
Sbjct: 77  NNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-PLKNLT 134

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG 235
           +L  L++    I+ +  ++  + +L+ L   +   Q++  KP     LT L  L  +S  
Sbjct: 135 NLNRLELSSNTISDIS-ALSGLTSLQQLSFGN---QVTDLKPLAN--LTTLERLD-IS-S 186

Query: 236 KKSPPLNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRLRS--INDFYVPSD 291
            K   ++ L  L++L++L    N     +I+++  +  LT+L+ L L    + D      
Sbjct: 187 NKVSDISVLAKLTNLESLIATNN-----QISDITPLGILTNLDELSLNGNQLKD------ 235

Query: 292 LAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLR 347
             IG+L +   L +L L    +  L     L      L    L  + +S   +  L  L 
Sbjct: 236 --IGTLASLTNLTDLDLANNQISNLAPLSGL----TKLTELKLGANQISN--ISPLAGLT 287

Query: 348 ELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKLEIRN 405
            L  L L   + +  +          L  L L+   + ++        ++T L++L   N
Sbjct: 288 ALTNLEL-NENQL--EDISPISNLKNLTYLTLYFNNISDISPV----SSLTKLQRLFFYN 340

Query: 406 CPKLKMPTELTKLSNLKELTL 426
             K+   + L  L+N+  L+ 
Sbjct: 341 N-KVSDVSSLANLTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 64/329 (19%), Positives = 114/329 (34%), Gaps = 41/329 (12%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
            N +  + A+ G   L+ L      +    + +  L  L  + +    +  I   L  L 
Sbjct: 143 SNTISDISALSGLTSLQQLSFG--NQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLT 199

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS-- 233
           +LE+L   +  I+ +   +  +  L  L LN   L+           LTNL  L  L+  
Sbjct: 200 NLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI--GTLAS--LTNLTDLD-LANN 253

Query: 234 -IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRLRS--INDFYV 288
            I   +P    L  L+ L  L L  N     +I+N+  + GLT+L +L L    + D   
Sbjct: 254 QISNLAP----LSGLTKLTELKLGAN-----QISNISPLAGLTALTNLELNENQLED--- 301

Query: 289 PSDLAIGSLNNHKELKELYLLG-RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLR 347
                I  ++N K L  L L    +     +  L   L+      + +S+  +  L  L 
Sbjct: 302 -----ISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFYNNKVSD--VSSLANLT 353

Query: 348 ELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP 407
            +  L    H+ I +     N    ++  L L          +   A  ++         
Sbjct: 354 NINWLSA-GHNQISDLTPLAN--LTRITQLGLNDQA-WTNAPVNYKANVSIPNTVKNVTG 409

Query: 408 KLKMPTELTKLSNLKELTLVKKVLKMKPE 436
            L  P  ++   +  E  +   +     E
Sbjct: 410 ALIAPATISDGGSYTEPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 70/308 (22%), Positives = 121/308 (39%), Gaps = 56/308 (18%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY 204
             +   L  +  +   R  I SI   +  L++L  ++  +  +T +   +  +  L  + 
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDIL 96

Query: 205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPLNWLENLSDLKNLGL----IC 257
           +N+  +  +   P     LTNL  L  L    I    P    L+NL++L  L L    I 
Sbjct: 97  MNNNQI--ADITPLAN--LTNLTGLT-LFNNQITDIDP----LKNLTNLNRLELSSNTIS 147

Query: 258 NIASLGKITNL--------------IQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHK 301
           +I++L  +T+L              +  LT+LE L + S  ++D        I  L    
Sbjct: 148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--------ISVLAKLT 199

Query: 302 ELKELYLLG-RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360
            L+ L     ++     L  L  NL   +L+ + L +  +  L  L  L  L L A++ I
Sbjct: 200 NLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKD--IGTLASLTNLTDLDL-ANNQI 255

Query: 361 GEKMTCGNGGFPQLRVLKLWV--LKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKL 418
                       +L  LKL    +  +         +TAL  LE+    +L+  + ++ L
Sbjct: 256 SNLAPLSG--LTKLTELKLGANQISNISPL----AGLTALTNLELNEN-QLEDISPISNL 308

Query: 419 SNLKELTL 426
            NL  LTL
Sbjct: 309 KNLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 16/139 (11%), Positives = 40/139 (28%), Gaps = 4/139 (2%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
            N +  +  +     L+ L   +     +   +  L  + ++      I  +   L +L 
Sbjct: 318 FNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLT 375

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL--S 233
            +  L +     T+ P +     ++ +   N     ++        S T     W L   
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

Query: 234 IGKKSPPLNWLENLSDLKN 252
             + S   +    +     
Sbjct: 436 TNEVSYTFSQPVTIGKGTT 454

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 59/324 (18%), Positives = 103/324 (31%), Gaps = 21/324 (6%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSIP-KSL 171
            N+L  +          L  LDL       +  +T      L  + L    +  +   +L
Sbjct: 42  FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101

Query: 172 GDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL- 229
               +L+ L    T I+S+    +   KTL  LYL   H+               L+ L 
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLD 159

Query: 230 -WGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI-NDFY 287
               +I         + +L    NL L  N   +  I          +SL      N   
Sbjct: 160 FQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 288 VPSDLAIGSLNNHKELKELYL-LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL 346
           +   L   ++ +        +    +   +       ++    L   Y            
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKLEI- 403
             L+ L L   +++  ++  G  G   L+ L L     + L + +       +L  L I 
Sbjct: 278 SGLQELDL-TATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLSIK 333

Query: 404 RNCPKLKMPTE-LTKLSNLKELTL 426
            N  +L++ T  L  L NL+EL L
Sbjct: 334 GNTKRLELGTGCLENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 23/263 (8%)

Query: 131 LRVLDLEDVYKPVLPETI---GKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTN 186
           L +   ED+    +   +        +  + L++ +  +I   +      L+ LD+  T+
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 187 ITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW--GLSIGKKSPPLNWL 244
           ++ LP  +  + TL+ L L+    +   Q      +  +L  L   G +   +      L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISAS--NFPSLTHLSIKGNTKRLELGT-GCL 346

Query: 245 ENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303
           ENL +L+ L L  + I +       ++ L+ L+SL L   N+      L   +     +L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEP---LSLKTEAFKECPQL 402

Query: 304 KELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359
           + L L    L           L   L++  LS S L      +   L  L+ L L   ++
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNL-QGNH 460

Query: 360 IGEKMTCGNGGF---PQLRVLKL 379
             +             +L +L L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 54/332 (16%), Positives = 107/332 (32%), Gaps = 34/332 (10%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSIPK-SL 171
              +  +    +   + L  L L   +   +        + L+ +  +   I  + K  +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 172 GDLHSLE--TLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL 229
             L      +L++   +I  +    +     + L        + + K     ++ +L   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 230 --WGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDF 286
               +     SP +        ++++ L  +   ++   +N     + L+ L L + +  
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI--SSNTFHCFSGLQELDLTATHLS 291

Query: 287 YVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSY---LSEDP 339
            +PS      L     LK+L L       L   +      P+L    LS+       E  
Sbjct: 292 ELPS-----GLVGLSTLKKLVLSANKFENLC-QISASNF-PSLT--HLSIKGNTKRLELG 342

Query: 340 MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGA---MT 396
              L  L  L+ L L +H  I E   C N     L  L+   L   +  +++  A     
Sbjct: 343 TGCLENLENLRELDL-SHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 397 ALEKLEIRNCP--KLKMPTELTKLSNLKELTL 426
            LE L++           +    L  LK L L
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 52/303 (17%), Positives = 95/303 (31%), Gaps = 58/303 (19%)

Query: 164 IDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPS 222
           ++ IP +L   +S E L+     + ++   +  ++  L  L L    +    +  F   S
Sbjct: 24  LNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--S 79

Query: 223 LTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRL 280
              L TL  L+           L     LK+L  I   I+S+      +    +LESL L
Sbjct: 80  QHRLDTLV-LTANPLIFMAETALSGPKALKHLFFIQTGISSI--DFIPLHNQKTLESLYL 136

Query: 281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP-------NLRIFTLSLS 333
            S N     S + +      ++LK L           +H L              +L+L+
Sbjct: 137 GS-NHI---SSIKLPKGFPTEKLKVLDFQN-----NAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 334 YLS-EDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE 392
                   P        ++L           +         ++ L L   +++ +  I  
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNF--GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 393 GAMTALEKLEIR------------------NCPKLK-----------MPTELTKLSNLKE 423
                L ++ +                       L+           +P+ L  LS LK+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305

Query: 424 LTL 426
           L L
Sbjct: 306 LVL 308

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 19/181 (10%)

Query: 116 GNLLKMVI---AIRGYRLLRVLDLED---VYKPVLPETIGKLQLLRYVGLRRTFIDSIPK 169
           GN  ++ +    +     LR LDL              +  L  L+ + L      S+  
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 170 -SLGDLHSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL 226
            +  +   LE LD+  T +           +  L+ L L+   L +S ++ F    L  L
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPAL 451

Query: 227 RTLWGLS----IGKKSPPLNWLENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLR 281
           + L  L             N L+ L  L+ L L  C+++S+ +  +    L  +  + L 
Sbjct: 452 QHLN-LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLKMMNHVDLS 508

Query: 282 S 282
            
Sbjct: 509 H 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 131 LRVLDLED----VYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHT 185
           L+ L+L+             ++  L  L  + L    + SI + +   L  +  +D+ H 
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 186 NITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230
            +TS            +L L   H+ + +      P L+  RT+ 
Sbjct: 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLL--PILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 36/262 (13%), Positives = 82/262 (31%), Gaps = 28/262 (10%)

Query: 178 ETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS---I 234
           +T + ++  +  +P ++    +   L  +   L       F    L NL  L  L+   I
Sbjct: 15  KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTF--SRLINLTFLD-LTRCQI 69

Query: 235 GKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDFYVPSDLA 293
                  +  ++   L  L L  N +  +      + G  +L+ L           S + 
Sbjct: 70  --YWIHEDTFQSQHRLDTLVLTANPLIFM--AETALSGPKALKHLFF-IQTGI---SSID 121

Query: 294 IGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLREL 349
              L+N K L+ LYL    +  +  P         L++     + +       +  L++ 
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPK-GFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 350 KALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW--TIEEGAMTALEKLEIRNCP 407
             L L  +      +  G       + L     + L      ++   + +L      +  
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 408 KLKMPTEL---TKLSNLKELTL 426
              +   +       +++ + L
Sbjct: 240 DEDISPAVFEGLCEMSVESINL 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 31/170 (18%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNITSLPKSIWK-VKTLR 201
            E   +   L  + L  T +          +LH L+ L++ H+ +    + ++  +  L+
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK---KSPPLNWLENLSDLKNLGLICN 258
           HL L   H      +     SL  L  L  L +      S   +   +L  + ++ L  N
Sbjct: 453 HLNLQGNHFPKGNIQKT--NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 259 ------IASLGKITNL----------------IQGLTSLESLRLRSINDF 286
                 I +L  +  +                +  L+   ++ LR  N  
Sbjct: 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQ-NPL 559

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 64/380 (16%), Positives = 123/380 (32%), Gaps = 70/380 (18%)

Query: 69  SDLCVCRLAEHLDNLSSIT--PSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMV---I 123
            ++    L E L + S++T  P + +  +    Y               G   +M    +
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 124 AIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMK 183
                R    L+L ++    LPE    L+ L         +  +P+    L SL   +  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLV---ASCNSLTELPELPQSLKSLLVDNNN 122

Query: 184 HTNITSLPKS----------------IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
              ++ LP                  +     L+ + +++  L+       +     +L 
Sbjct: 123 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK------LPDLPPSLE 176

Query: 228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY 287
            +   +   +  P   L+NL  L  +    N      +  L     SLES+   + N   
Sbjct: 177 FIAAGNNQLEELPE--LQNLPFLTAIYADNN-----SLKKLPDLPLSLESIVAGN-NILE 228

Query: 288 VPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVL 343
              +  + +L     L  +Y     L  LP      +LPP+L    +  +YL++ P  + 
Sbjct: 229 ELPE--LQNLPF---LTTIYADNNLLKTLP------DLPPSLEALNVRDNYLTDLP-ELP 276

Query: 344 GQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKL 401
             L  L               +  +   P L  L      ++ L           +LE+L
Sbjct: 277 QSLTFLDVSEN--------IFSGLSELPPNLYYLNASSNEIRSL------CDLPPSLEEL 322

Query: 402 EIRNCPKLKMPTELTKLSNL 421
            + N   +++P    +L  L
Sbjct: 323 NVSNNKLIELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 42/234 (17%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
           L  +   +     LPE +  L  L  +      + ++P       SLE L+++   +T L
Sbjct: 217 LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDL 272

Query: 191 PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL--- 247
           P+    +  L         L        + P+L  L       I         LE L   
Sbjct: 273 PELPQSLTFLDVSENIFSGL------SELPPNLYYL-NASSNEIRSLCDLPPSLEELNVS 325

Query: 248 -----------SDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGS 296
                        L+ L    N      +  + +   +L+ L +        P       
Sbjct: 326 NNKLIELPALPPRLERLIASFN-----HLAEVPELPQNLKQLHVEYNPLREFPDIPE--- 377

Query: 297 LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELK 350
                 +++L +   L    ++ ELP NL+   +  + L E P  +   + +L+
Sbjct: 378 -----SVEDLRMNSHL---AEVPELPQNLKQLHVETNPLREFP-DIPESVEDLR 422

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 8e-13
 Identities = 62/322 (19%), Positives = 113/322 (35%), Gaps = 67/322 (20%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
           GN +  +  +     L  L +    K      +  L  LR + L    I  I   L +L 
Sbjct: 75  GNQITDISPLSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISDIS-PLANLT 132

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS-- 233
            + +L++   +  S    +  +  L +L + +  ++     P     LT+L +L  L+  
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV--TPIAN--LTDLYSLS-LNYN 187

Query: 234 -IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRLRS--INDFYV 288
            I   SP    L +L+ L       N     +IT++  +  +T L SL++ +  I D   
Sbjct: 188 QIEDISP----LASLTSLHYFTAYVN-----QITDITPVANMTRLNSLKIGNNKITD--- 235

Query: 289 PSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLG 344
                +  L N  +L  L +    +  +     L      L++  +  + +S+  + VL 
Sbjct: 236 -----LSPLANLSQLTWLEIGTNQISDINAVKDL----TKLKMLNVGSNQISD--ISVLN 284

Query: 345 QLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIR 404
            L +L +L L             N    QL    + V+  L          T L  L + 
Sbjct: 285 NLSQLNSLFL-----------NNN----QLGNEDMEVIGGL----------TNLTTLFLS 319

Query: 405 NCPKLKMPTELTKLSNLKELTL 426
               +     L  LS +     
Sbjct: 320 QNH-ITDIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 53/295 (17%), Positives = 108/295 (36%), Gaps = 52/295 (17%)

Query: 146 ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205
                L       L++  +  +  +  +L S+  L +    + S+   I  +  L +L L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNL 73

Query: 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICNIASLGK 264
           N   +            L+NL  L  L IG  K   ++ L+NL++L+ L L  +      
Sbjct: 74  NGNQITDI-------SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED-----N 121

Query: 265 ITNL--IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG-RLPGPLKLHEL 321
           I+++  +  LT + SL L + ++    S   + ++     L  L +   ++     +  L
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLS--PLSNMTG---LNYLTVTESKVKDVTPIANL 176

Query: 322 PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN--------GGFPQ 373
             +L   +L+ + + +  +  L  L  L     +            N            +
Sbjct: 177 -TDLYSLSLNYNQIED--ISPLASLTSLHYFTAY-----------VNQITDITPVANMTR 222

Query: 374 LRVLKLW--VLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
           L  LK+    + +L         ++ L  LEI    ++     +  L+ LK L +
Sbjct: 223 LNSLKIGNNKITDLSPL----ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNV 272

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 29/214 (13%), Positives = 64/214 (29%), Gaps = 61/214 (28%)

Query: 223 LTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRL 280
              L       I +  P      +L++     L         +T++   + L S+  L +
Sbjct: 2   AATL-ATLPAPINQIFP----DADLAEGIRAVLQKA-----SVTDVVTQEELESITKLVV 51

Query: 281 RS--INDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP-----NLRIFTLSLS 333
               +          I  +     L+ L L G      ++ ++ P      L    +  +
Sbjct: 52  AGEKVAS--------IQGIEYLTNLEYLNLNGN-----QITDISPLSNLVKLTNLYIGTN 98

Query: 334 YLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEG 393
            +++  +  L  L  L+ L L             +          +  +  L        
Sbjct: 99  KITD--ISALQNLTNLRELYLN-----------ED---------NISDISPL-------A 129

Query: 394 AMTALEKLEIRNCPKLKMPTELTKLSNLKELTLV 427
            +T +  L +     L   + L+ ++ L  LT+ 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 28/314 (8%)

Query: 124 AIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLD 181
            +R    L+VL L+      +  +    L  L ++ L    + S+  S  G L SL+ L+
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 182 MKHTNITSLPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW--GLSIGKK 237
           +      +L  +     +  L+ L + ++     +++      LT+L  L    LS+  +
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSL--R 161

Query: 238 SPPLNWLENLSDLKNLGLICNIASLGKITNLI-QGLTSLESLRLRSINDFYVPSDLAIGS 296
           +     L+++ D+ +L L  +      +  +    L+S+  L LR  N         +  
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLS--ESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLPV 218

Query: 297 LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFA 356
                 +K+L   G +      +EL   L  + L LS +  D   + G       L  F 
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNEL-LKLLRYILELSEVEFDDCTLNG-------LGDFN 270

Query: 357 HSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGA---MTALEKLEIRNCPKLKMPT 413
            S        G      +R L    + +   +         +  ++++ + N     +P 
Sbjct: 271 PSESDVVSELGKVETVTIRRLH---IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 414 E-LTKLSNLKELTL 426
                L +L+ L L
Sbjct: 328 SFSQHLKSLEFLDL 341

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 55/248 (22%), Positives = 89/248 (35%), Gaps = 28/248 (11%)

Query: 164 IDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPS 222
             SIP  L    ++++LD+    IT +    +     L+ L L    +       F   S
Sbjct: 17  FTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--S 72

Query: 223 LTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRL 280
           L +L  L  LS     S   +W   LS LK L L+ N   +LG +T+L   LT+L++LR+
Sbjct: 73  LGSLEHLD-LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-VTSLFPNLTNLQTLRI 130

Query: 281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP-------NLRIFTLSLS 333
            ++  F     +    L +   L EL +       L L            ++   TL LS
Sbjct: 131 GNVETFSEIRRIDFAGLTS---LNELEIKA-----LSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 334 YLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEG 393
             +         L  ++ L L   +             P   V         +   + + 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNL----ARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 394 AMTALEKL 401
           +   L KL
Sbjct: 239 SFNELLKL 246

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 48/237 (20%), Positives = 83/237 (35%), Gaps = 36/237 (15%)

Query: 131 LRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGD-LHSLETLDMKHTNIT 188
           +R L +   Y    L      L+ ++ + +  + +  +P S    L SLE LD+    + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 189 SL----PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPL 241
                         +L+ L L+  HL+   +   +  +L NL +L  +S           
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD-ISRNTFHPMPDSC 406

Query: 242 NWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHK 301
            W E +  L NL     I  +           +LE L + + N       L         
Sbjct: 407 QWPEKMRFL-NLS-STGIRVVKT-----CIPQTLEVLDVSNNNLDSFSLFL--------P 451

Query: 302 ELKELYL----LGRLPGPLKLHELPPNLRIFTLS---LSYLSEDPMPVLGQLRELKA 351
            L+ELY+    L  LP       L P L +  +S   L  + +     L  L+++  
Sbjct: 452 RLQELYISRNKLKTLPD----ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 28/162 (17%)

Query: 131 LRVLDLEDVYKPVLPETIG---KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNI 187
           L+ L L   +   + +T      L+ L  + + R     +P S      +  L++  T I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 188 TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL 247
             +   I +  TL  L +++ +L            L  L+ L+ +S        N L+ L
Sbjct: 423 RVVKTCIPQ--TLEVLDVSNNNLD------SFSLFLPRLQELY-IS-------RNKLKTL 466

Query: 248 SD------LKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
            D      L  + +  N + S+     +   LTSL+ + L +
Sbjct: 467 PDASLFPVLLVMKISRNQLKSVPD--GIFDRLTSLQKIWLHT 506

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 22/220 (10%)

Query: 124 AIRGYRLLRVLDLED---VYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETL 180
                  L  L L      +K    ++      L+Y+ L    + ++  +   L  LE L
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106

Query: 181 DMKHTNITSLPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS--IGK 236
           D +H+N+  + +      ++ L +L ++  H +++    F    L++L  L  ++    +
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLK-MAGNSFQ 163

Query: 237 KSPPLNWLENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIG 295
           ++   +    L +L  L L  C +  L         L+SL+ L +   N+F     L   
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSH-NNF---FSLDTF 217

Query: 296 SLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLS 331
                  L+ L      +        L   P +L    L+
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 19/198 (9%)

Query: 162 TFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKP 221
           +F     +S     SL+ LD+    + ++  +   ++ L HL     +L+  + +  V  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

Query: 222 SLTNLRTLW--GLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLR 279
           SL NL  L         +         LS L+ L +  N      + ++   L +L  L 
Sbjct: 124 SLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 280 LRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLS---L 332
           L           L+  + N+   L+ L +       L        L  +L++   S   +
Sbjct: 182 LSQ-CQL---EQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCL-NSLQVLDYSLNHI 235

Query: 333 SYLSEDPM-PVLGQLREL 349
               +  +      L  L
Sbjct: 236 MTSKKQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 48/205 (23%)

Query: 157 VGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLRHLYLNDIHLQMSVQ 215
           +      + S+P  +    S   L+++   + SLP  ++ K+  L  L L+   L     
Sbjct: 12  IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 216 KPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSL 275
                   T+L+ L                +LS   N         +  +++   GL  L
Sbjct: 70  CSQSDFGTTSLKYL----------------DLSF--N--------GVITMSSNFLGLEQL 103

Query: 276 ESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELP-------PNLRIF 328
           E L  +  N   +       SL N   L  L +                      +L + 
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRN---LIYLDI-----SHTHTRVAFNGIFNGLSSLEVL 155

Query: 329 TLS----LSYLSEDPMPVLGQLREL 349
            ++          D    L  L  L
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFL 180

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 58/302 (19%), Positives = 95/302 (31%), Gaps = 62/302 (20%)

Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS 213
           L    L   F  ++  SL  L  LE+L + +++I           +L  L L+   L   
Sbjct: 57  LSSKPLNVGF-SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP 115

Query: 214 VQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLT 273
           V                          L  L + S LK L +  N        +    L 
Sbjct: 116 V------------------------TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 274 SLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG-RLPGPLKLHELPPNLRIFTLSL 332
           SLE L L S N     + +     +   ELK L + G ++ G + +     NL    +S 
Sbjct: 152 SLEVLDL-SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-VNLEFLDVSS 209

Query: 333 SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV--LKELKEWTI 390
           +  S   +P LG    L+ L +  +   G+  +       +L++L +            I
Sbjct: 210 NNFS-TGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQF----VGPI 263

Query: 391 EEGAMTALEKLEIR--------------NCPKLKM------------PTELTKLSNLKEL 424
               + +L+ L +                C  L              P      S L+ L
Sbjct: 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 425 TL 426
            L
Sbjct: 324 AL 325

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 61/305 (20%), Positives = 113/305 (37%), Gaps = 45/305 (14%)

Query: 144 LPETIGKLQLLRYVGLRRT-FIDSIPKSLGDLHSLETLDMKHTNIT-SLP--KSIWKVKT 199
           +  ++  L  L  + L  +    S+        SL +LD+   +++  +    S+     
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 200 LRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW----GLSIGKKSPPLNWLENLSDLKNLGL 255
           L+ L ++   L    +       L +L  L      +S G         +   +LK+L +
Sbjct: 128 LKFLNVSSNTLDFPGKVSGG-LKLNSLEVLDLSANSIS-GANVVGWVLSDGCGELKHLAI 185

Query: 256 -ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG-RLP 313
               I+  G +   +    +LE L + S N+F       I  L +   L+ L + G +L 
Sbjct: 186 SGNKIS--GDVD--VSRCVNLEFLDV-SSNNFSTG----IPFLGDCSALQHLDISGNKLS 236

Query: 314 G--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGF 371
           G     +      L++  +S +     P+P    L+ L+ L L  + + GE     +G  
Sbjct: 237 GDFSRAISTC-TELKLLNISSNQFV-GPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 372 PQLRVLKLW-------VLKELKEWTIEEGAMTALEKLEIRNCPKL--KMPTE-LTKLSNL 421
             L  L L        V           G+ + LE L + +      ++P + L K+  L
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFF-------GSCSLLESLALSSN-NFSGELPMDTLLKMRGL 345

Query: 422 KELTL 426
           K L L
Sbjct: 346 KVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 62/279 (22%), Positives = 101/279 (36%), Gaps = 61/279 (21%)

Query: 144 LPETI-GKLQLLRYVGLRRT-FIDSIPKSLGDLHSLETLDMKHTNIT-SLPK-SIWKVKT 199
           +P+ + G    L  + L    F  ++P   G    LE+L +   N +  LP  ++ K++ 
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 200 LRHLYLNDIHLQMSVQKPFVKPSLTNLRT-LWGLSIGK-----KSPPLNWLENLSDLKNL 253
           L+ L L+       +       SLTNL   L  L +          P       + L+ L
Sbjct: 345 LKVLDLSFNEFSGELP-----ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 254 GL------------ICNIASL-----------GKITNLIQGLTSLESLRLRSINDFY--V 288
            L            + N + L           G I + +  L+ L  L+L   N     +
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEI 458

Query: 289 PSDLAIGSLNNHKELKELYLLG-RLPGPLKLHELPPNLRIFTLSLSYLS------EDPMP 341
           P       L   K L+ L L    L G      +P  L   T +L+++S         +P
Sbjct: 459 PQ-----ELMYVKTLETLILDFNDLTGE-----IPSGLSNCT-NLNWISLSNNRLTGEIP 507

Query: 342 V-LGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKL 379
             +G+L  L  L+L  +S+ G  +    G    L  L L
Sbjct: 508 KWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 15/169 (8%)

Query: 144 LPETIGKLQLLRYVGLRR-TFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLR 201
           +P+ IG+L+ L  + L   +F  +IP  LGD  SL  LD+       ++P +++K     
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK- 564

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261
              +    +            +       G  +  +      L  LS      +   +  
Sbjct: 565 ---IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 262 LGKITNLIQGLTSLESLRLRSINDF--YVPSDLAIGSLNNHKELKELYL 308
            G  +       S+  L + S N    Y+P +  IGS+     L  L L
Sbjct: 622 -GHTSPTFDNNGSMMFLDM-SYNMLSGYIPKE--IGSM---PYLFILNL 663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 25/156 (16%)

Query: 59  GSRSNATSSSSDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNL 118
           G R     +      C  A +L     I      +    +      +  GG  +  F N 
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 119 LKMVIAIRGYRLLRVLDL-------EDVYKPVLPETIGKLQLLRYVGLRR-TFIDSIPKS 170
                       +  LD+              +P+ IG +  L  + L       SIP  
Sbjct: 632 ----------GSMMFLDMSYNMLSGY------IPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 171 LGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHLYL 205
           +GDL  L  LD+    +   +P+++  +  L  + L
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 54/312 (17%), Positives = 94/312 (30%), Gaps = 66/312 (21%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDS--I 167
             G F  L            L+ L   +     +    IG L+ L+ + +    I S  +
Sbjct: 92  ALGAFSGLSS----------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 168 PKSLGDLHSLETLDMKHTNITSL----------------------------PKSIWKVKT 199
           P+   +L +LE LD+    I S+                                +K   
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 200 LRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW------GLSIGKKSPPLNWLENLS--DLK 251
           L  L L +    ++V K  ++  L  L                +    + LE L    ++
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGR 311
              L      L  I +L   LT++ S  L S           +   + +   + L L+  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS-VTI-----ERVKDFSYNFGWQHLELVN- 313

Query: 312 LPGPLKLHELPPN--LRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN- 368
                K  + P      +  L+ +            L  L+ L L + + +  K  C   
Sbjct: 314 ----CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQS 368

Query: 369 -GGFPQLRVLKL 379
             G   L+ L L
Sbjct: 369 DFGTTSLKYLDL 380

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 62/316 (19%), Positives = 112/316 (35%), Gaps = 33/316 (10%)

Query: 131 LRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNIT 188
            + LDL     + +   +      L+ + L R  I +I   +   L  L TL +    I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 189 SL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG----KKSPPLNW 243
           SL   +   + +L+ L   + +L      P       +L+TL  L++     +      +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPI-----GHLKTLKELNVAHNLIQSFKLPEY 144

Query: 244 LENLSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLR---SINDFYVPSDLAIGSLNN 299
             NL++L++L L    I S+      ++ L  +  L L    S+N        A   +  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 300 HKELKELYLLG---RLPGPLKLHELPPNLRIFTLSLSYLSED---PMPVLGQLRELKALR 353
              L +L L      L       +    L +  L L     +          L  L  L 
Sbjct: 202 ---LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 354 L--FAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGA-MTALEKLEIRNCPKLK 410
           +  F  +Y+   +      F  L  +  + L  +    +++ +     + LE+ NC   +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 411 MPTELTKLSNLKELTL 426
            PT    L +LK LT 
Sbjct: 319 FPTLK--LKSLKRLTF 332

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 27/234 (11%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRR---TFIDSIPKSLGDLHSLETLDMKHTNI 187
           L+ L      K     +   L  L ++ L R   +F     +S     SL+ LD+    +
Sbjct: 327 LKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 188 TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW----GLSIGKKSPPLNW 243
            ++  +   ++ L HL     +L+   +      SL NL  L                  
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTR----VAFNGI 440

Query: 244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303
              LS L+ L +  N      + ++   L +L  L L           L+  + N+   L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQL---EQLSPTAFNSLSSL 496

Query: 304 KELYL----LGRLPGPLKLHELPPNLRIFTLS---LSYLSEDPM-PVLGQLREL 349
           + L +       L        L  +L++   S   +    +  +      L  L
Sbjct: 497 QVLNMSHNNFFSLD-TFPYKCL-NSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 36/222 (16%)

Query: 117 NLLKMVIAIRGYRLLRVLDLED---VYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGD 173
           N      +      L  LDL      +K    ++      L+Y+ L    + ++  +   
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 174 LHSLETLDMKHTNITSL-PKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231
           L  LE LD +H+N+  +   S++  ++ L +L ++  H +++    F    L++L  L  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLK- 451

Query: 232 LSI--GKKSPPLNWLENLSDLKNLGL------------ICNIASL-----------GKIT 266
           ++    +++   +    L +L  L L              +++SL              T
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 267 NLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL 308
              + L SL+ L     N         +    +   L  L L
Sbjct: 512 FPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSS--LAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 63/283 (22%), Positives = 107/283 (37%), Gaps = 36/283 (12%)

Query: 166 SIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT 224
            IP +L    S + LD+    +  L   S +    L+ L L+   +Q      +   SL+
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLS 76

Query: 225 NLRTLWGLS---IGKKSPPLNWLENLSDLKNLGLI-CNIASLGKITNLIQGLTSLESLRL 280
           +L TL  L+   I  +S  L     LS L+ L  +  N+ASL      I  L +L+ L +
Sbjct: 77  HLSTLI-LTGNPI--QSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNV 131

Query: 281 RSINDF-YVPSDLAIGSLNNHKELKELYL----LGRLPGPL--KLHELPPNLRIFTLSLS 333
            + N            +L N   L+ L L    +  +       LH++P       LSL+
Sbjct: 132 -AHNLIQSFKLPEYFSNLTN---LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 334 YLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEG 393
            ++        ++R L  L L  +      M     G   L V +L + +   E  +E+ 
Sbjct: 188 PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 394 AMTALEKLEIRNCPKLK----------MPTELTKLSNLKELTL 426
             +ALE L      + +          +      L+N+   +L
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 53/293 (18%), Positives = 92/293 (31%), Gaps = 50/293 (17%)

Query: 145 PETIGKLQLLRYVGLRRTFID----SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTL 200
              +  L  L     R  ++D     I      L ++ +  +    I  +    +     
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGW 306

Query: 201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-I 259
           +HL L +          F    L +L+ L   S    +       +L  L+ L L  N +
Sbjct: 307 QHLELVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL 359

Query: 260 ASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGP 315
           +  G  +    G TSL+ L L S N     S   +G       L+ L      L ++   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQ----LEHLDFQHSNLKQMSEF 414

Query: 316 LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR 375
                L  NL    +S ++       +   L  L+ L++  +S+    +         L 
Sbjct: 415 SVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 376 VLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK--MPTELTKLSNLKELTL 426
            L L                          C +L+   PT    LS+L+ L +
Sbjct: 474 FLDL------------------------SQC-QLEQLSPTAFNSLSSLQVLNM 501

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 62/309 (20%), Positives = 112/309 (36%), Gaps = 44/309 (14%)

Query: 143 VLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSI-WKVKTL 200
           +   +      L+ + L R  I +I   +   L  L TL +    I SL       + +L
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK--KSPPLNWLENLSDLKNLGLICN 258
           + L   + +L      P     L  L+ L  ++           +  NL++L++L L  N
Sbjct: 103 QKLVAVETNLASLENFPIGH--LKTLKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 259 IASLGKITNL----IQGLTSLESLRLR---SINDFYVPSDLAIGSLNNHKELKELYL--- 308
                KI ++    ++ L  +  L L    S+N        A   +     L +L L   
Sbjct: 160 -----KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----LHKLTLRNN 210

Query: 309 ----------LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHS 358
                     +  L G L++H L         +L    +  +  L  L  ++  RL   +
Sbjct: 211 FDSLNVMKTCIQGLAG-LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRL---A 265

Query: 359 YIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGA-MTALEKLEIRNCPKLKMPTELTK 417
           Y+   +      F  L  +  + L  +    +++ +     + LE+ NC   + PT   K
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--K 323

Query: 418 LSNLKELTL 426
           L +LK LT 
Sbjct: 324 LKSLKRLTF 332

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 11/182 (6%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRR---TFIDSIPKSLGDLHSLETLDMKHTNI 187
           L+ L             +  L  L ++ L R   +F     +S     SL+ LD+    +
Sbjct: 327 LKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 188 TSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLEN 246
            ++  +   ++ L HL     +L+  + +  V  SL NL  L  +S    +         
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD-ISHTHTRVAFNGIFNG 443

Query: 247 LSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL 306
           LS L+ L +  N      + ++   L +L  L L           L+  + N+   L+ L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQL---EQLSPTAFNSLSSLQVL 499

Query: 307 YL 308
            +
Sbjct: 500 NM 501

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 13/166 (7%)

Query: 124 AIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS--LGDLHSLETLD 181
           +  G   L+ LDL       +      L+ L ++  + + +  + +      L +L  LD
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 182 MKHTNITSLPKSIW-KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS---IGKK 237
           + HT+       I+  + +L  L +     Q +   P +   L NL  L  LS   +  +
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLD-LSQCQL--E 483

Query: 238 SPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
                   +LS L+ L +  N + S+     +   LTSL+ + L +
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 62/336 (18%), Positives = 111/336 (33%), Gaps = 44/336 (13%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSI-- 167
             G F  L            L+ L   +     +    IG L+ L+ + +    I S   
Sbjct: 92  ALGAFSGLSS----------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 168 PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQK-------PFVK 220
           P+   +L +LE LD+    I S+  +  +V  L  + L ++ L +S+          F +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 221 PSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKIT----NLIQGLTSL 275
             L  L TL              ++ L+ L+   L+     + G +     + ++GL +L
Sbjct: 200 IRLHKL-TLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 276 ESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP---NLRIFTLSL 332
                R +       D  I   N    +    L+      + +  +     N     L L
Sbjct: 258 TIEEFR-LAYLDYYLDDIIDLFNCLTNVSSFSLVS-----VTIERVKDFSYNFGWQHLEL 311

Query: 333 SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTI 390
                   P L +L+ LK L     +             P L  L L    L      + 
Sbjct: 312 VNCKFGQFPTL-KLKSLKRLTF---TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 391 EEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
            +   T+L+ L++     + M +    L  L+ L  
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 42/224 (18%), Positives = 75/224 (33%), Gaps = 21/224 (9%)

Query: 162 TFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKP 221
            ++D I      L ++ +  +    I  +    +     +HL L +       Q P +  
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFG---QFPTL-- 322

Query: 222 SLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRL 280
            L +L+ L   S    +       +L  L+ L L  N ++  G  +    G TSL+ L L
Sbjct: 323 KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 281 RSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLS 336
                  + S+     L     L+ L      L ++        L  NL    +S ++  
Sbjct: 381 SFNGVITMSSN--FLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTR 434

Query: 337 EDPMPVLGQLRELKALRLFAHSYIGEKMTCGN-GGFPQLRVLKL 379
                +   L  L+ L++ A +   E            L  L L
Sbjct: 435 VAFNGIFNGLSSLEVLKM-AGNSFQENFLPDIFTELRNLTFLDL 477

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 58/276 (21%)

Query: 131 LRVLDLEDVY---KPVLPETIGKLQLLRYVGLRRT--FIDSIPKSLGDLHSLETLDMKHT 185
           +  LDL  +       +P ++  L  L ++ +      +  IP ++  L  L  L + HT
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 186 NIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL------------ 232
           N++ ++P  + ++KTL  L  +   L  ++  P   PS+++L  L G+            
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTL--P---PSISSLPNLVGITFDGNRISGAIP 166

Query: 233 -SIGKKSPPLNWLENLSDLKNL--GLI------CNIASL--------GKITNLIQGLTSL 275
            S G  S     +  +S   N   G I       N+A +        G  + L     + 
Sbjct: 167 DSYGSFSKLFTSM-TISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 276 ESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG-RLPG--PLKLHELPPNLRIFTLSL 332
           + + L + N         +G +   K L  L L   R+ G  P  L +L   L    +S 
Sbjct: 224 QKIHL-AKNSLAFD----LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSF 277

Query: 333 SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368
           + L    +P  G L+          +Y   K  CG+
Sbjct: 278 NNLC-GEIPQGGNLQRFDVS-----AYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 58/304 (19%), Positives = 100/304 (32%), Gaps = 89/304 (29%)

Query: 143 VLPETIGKLQLLRYVGLRRTFID---SIPKSLGDLHSLETLDMKHTN-IT-SLPKSIWKV 197
           VL +T  +   +  + L    +     IP SL +L  L  L +   N +   +P +I K+
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 198 KTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLIC 257
             L +LY+   ++  ++  P     L+ ++TL  L         N L             
Sbjct: 101 TQLHYLYITHTNVSGAI--P---DFLSQIKTLVTLDFSY-----NALS------------ 138

Query: 258 NIASLGKITNLIQGLTSLESLRLRSINDF--YVPSDLAIGSLNNHKELKELYLLG--RLP 313
                G +   I  L +L  +     N     +P     GS +    L     +   RL 
Sbjct: 139 -----GTLPPSISSLPNLVGITFDG-NRISGAIPDS--YGSFSK---LFTSMTISRNRLT 187

Query: 314 GPLKLHELPP---NLRIFTLSLSY--LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN 368
           G +     PP   NL +  + LS   L  D   + G  +  + + L             N
Sbjct: 188 GKI-----PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA-----------KN 231

Query: 369 ---GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEI-RNCPKL--KMPTELTKLSNLK 422
                  ++                  G    L  L++  N  ++   +P  LT+L  L 
Sbjct: 232 SLAFDLGKV------------------GLSKNLNGLDLRNN--RIYGTLPQGLTQLKFLH 271

Query: 423 ELTL 426
            L +
Sbjct: 272 SLNV 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 3e-10
 Identities = 58/393 (14%), Positives = 117/393 (29%), Gaps = 117/393 (29%)

Query: 8   KKDFHQL--VLMNMIEVVKLKSDGRP---KTCRVPSSLSDYLFPDAESGGVFCIHDGSRS 62
            + + +L   L+ +     +  DG     KT         Y         +F ++  + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 63  NATSSSSDLCVCRLAEHLDNLSS-ITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKM 121
           +  +         + E L  L   I P+   + ++  +                   L+ 
Sbjct: 194 SPET---------VLEMLQKLLYQIDPNWTSRSDHSSNIKL--------RIHSIQAELRR 236

Query: 122 VIAIRGYR--LLRVLDLEDVYKPVLPETIGKLQLLRYVGLR-RTFIDSIPKSLGDLHSLE 178
           ++  + Y   LL VL   +V            +      L  +  + +  K + D   L 
Sbjct: 237 LLKSKPYENCLL-VLL--NVQNA---------KAWNAFNLSCKILLTTRFKQVTD--FLS 282

Query: 179 TLDMKHTNITSLPKSIWKVKTLRHL--YLN----DIHLQMSVQKPFV----KPSLTNLRT 228
                H ++     ++   +    L  YL+    D+  ++    P        S+ +   
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 229 LWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV 288
            W           NW     D              K+T +I+  +SL  L          
Sbjct: 343 TWD----------NWKHVNCD--------------KLTTIIE--SSLNVL---------- 366

Query: 289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYL-----SEDPMPVL 343
                        E ++++         +L   PP+  I T+ LS +       D M V+
Sbjct: 367 ----------EPAEYRKMF--------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 344 GQL-------RELKALRLFAHS-YIGEKMTCGN 368
            +L       ++ K   +   S Y+  K+   N
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 63/366 (17%), Positives = 112/366 (30%), Gaps = 78/366 (21%)

Query: 114 EFGNLLKMVIAI-RGYRLLRVLDL--EDVYKPVLPETIGKLQLLRYVGLRRTF-IDSIPK 169
           E  +++    A+    RL   L    E++ +  + E +       Y  L      +    
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQRQP 105

Query: 170 SLGDLHSLETLDMKHTNITSLPK-SIW---KVKTLR-HLY-LND-----IH--------- 209
           S+     +E  D  + +     K ++        LR  L  L       I          
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKIT-NL 268
           + + V   +      + +  W L++   + P   LE L  L    +  N  S    + N+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNI 223

Query: 269 IQGLTSLESLRLRSINDFYVPSDLAIGSLNN--HKELKELYLLG--------------RL 312
              + S+++   R +      + L +  L N  + +    + L                L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 313 PGPLKLH-ELPPNLRIFT------LSLSYLSEDP--MPVLGQLRELKALRLFAHSYIGEK 363
                 H  L  +    T      L L YL   P  +P     RE+        S I E 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLTTNPRRLSIIAES 336

Query: 364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNC-------PK-LKMPTEL 415
           +  G   +   + +    L  + E ++       LE  E R         P    +PT L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLN-----VLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 416 TKLSNL 421
             LS +
Sbjct: 392 --LSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 55/339 (16%), Positives = 106/339 (31%), Gaps = 86/339 (25%)

Query: 131 LRVLDLEDVYKPVL-----------PETIGKLQLLRYVGLRRTFIDSIPKSLGDLHS--- 176
               D++D+ K +L            + +     L +  L     + + K + ++     
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINY 91

Query: 177 --LETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI 234
             L +         S+   ++ ++    LY ND          F K +++ L+    L  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMY-IEQRDRLY-NDNQ-------VFAKYNVSRLQPYLKLR- 141

Query: 235 GKKSPPLNWLENLSDLKNLGLICNIASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLA 293
                    L  L   KN+ +   +   GK T + +    S +         F+    L 
Sbjct: 142 -------QALLELRPAKNVLI-DGVLGSGK-TWVALDVCLSYKVQCKMDFKIFW----LN 188

Query: 294 IGSLNNHKE----LKELYLL----------GRLPGPLKLHELPPNLRIFTLSLSYLSEDP 339
           + + N+ +     L++L                   L++H +   LR    S  Y  E+ 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENC 246

Query: 340 MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALE 399
           + VL  ++  KA   F  S       C        ++L   +       T  +     L 
Sbjct: 247 LLVLLNVQNAKAWNAFNLS-------C--------KIL---LT------TRFKQVTDFLS 282

Query: 400 KLEIRNCPKLKMPTELTKLSNLKE-LTLVKKVLKMKPED 437
                +         LT      E  +L+ K L  +P+D
Sbjct: 283 AATTTHISLDHHSMTLTP----DEVKSLLLKYLDCRPQD 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 64/313 (20%), Positives = 115/313 (36%), Gaps = 36/313 (11%)

Query: 131 LRVLDLEDVYKPVLPETI-GKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNIT 188
            R+LDL       L +        L  + L    + ++ P +  +L +L TL ++   + 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 189 SLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLEN 246
            +P  +   +  L  L +++  + + +   F    L NL++L  +               
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ--DLYNLKSLE-VGDNDLVYISHRAFSG 150

Query: 247 LSDLKNLGL-ICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE 305
           L+ L+ L L  CN+ S+   T  +  L  L  LRLR   +    + +   S      LK 
Sbjct: 151 LNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRH-LNI---NAIRDYSFKRLYRLKV 204

Query: 306 LYLLGRLPGPLKLHELPPN----LRIFTLSLSY--LSEDPMPVLGQLRELKALRLFAH-- 357
           L +         L  + PN    L + +LS+++  L+  P   +  L  L+ L L  +  
Sbjct: 205 LEISHW----PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 358 SYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEI----RNCPKLKMPT 413
           S I            +L  L+   L   +   +E  A   L  L +     N       +
Sbjct: 261 STI------EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

Query: 414 ELTKLSNLKELTL 426
               + NL+ L L
Sbjct: 315 VFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 32/285 (11%)

Query: 155 RYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMS 213
           R V   R    ++P+ +        LD+    I +L +  +     L  L LN+  +   
Sbjct: 14  RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 214 VQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQG 271
               F   +L NLRTL  L   + K  PL     LS+L  L +  N I  L     + Q 
Sbjct: 72  EPGAFN--NLFNLRTLG-LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD--YMFQD 126

Query: 272 LTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRI 327
           L +L+SL +   ND      ++  + +    L++L L    L  +P    L  L   L +
Sbjct: 127 LYNLKSLEVGD-NDL---VYISHRAFSGLNSLEQLTLEKCNLTSIPTEA-LSHL-HGLIV 180

Query: 328 FTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV----LK 383
             L    ++        +L  LK L +   S+     T        L +  L +    L 
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEI---SHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 384 ELKEWTIEEGAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTL 426
            +    +    +  L  L +   P +     + L +L  L+E+ L
Sbjct: 238 AVPYLAVRH--LVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL 279

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 33/177 (18%), Positives = 70/177 (39%), Gaps = 20/177 (11%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRT-FIDSIP 168
           P     +L            L VL L  +    +   +  +L  L+ + +    ++D++ 
Sbjct: 168 PTEALSHLHG----------LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 169 KSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
            +     +L +L + H N+T++P    + +  LR L L+   +            L  L+
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH--ELLRLQ 275

Query: 228 TLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
            +  L  G+           L+ L+ L +  N + +L +  ++   + +LE+L L S
Sbjct: 276 EIQ-LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE--SVFHSVGNLETLILDS 329

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 43/234 (18%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
              L L  +    LP+ +     +  + + +  + S+P+      SLE LD     +++L
Sbjct: 61  FSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPA---SLEYLDACDNRLSTL 115

Query: 191 PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD- 249
           P+       L+HL +++  L        +      L  +            N L  L + 
Sbjct: 116 PELPAS---LKHLDVDNNQLT------MLPELPALLEYIN-AD-------NNQLTMLPEL 158

Query: 250 ---LKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL 306
              L+ L +  N     ++T L +   SLE+L + +     +P+       ++ +E +  
Sbjct: 159 PTSLEVLSVRNN-----QLTFLPELPESLEALDVSTNLLESLPAV--PVRNHHSEETEIF 211

Query: 307 YLLGRLPGPLKLHELPPNL----RIFTLSLSY--LSEDPMPVLGQLRELKALRL 354
           +         ++  +P N+       T+ L    LS      L Q         
Sbjct: 212 FRCRE----NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 37/216 (17%)

Query: 144 LPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL 203
                 K +     G  R    S+ K    ++    L +   N++SLP ++     +  L
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSSLPDNLP--PQITVL 85

Query: 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLG 263
            +    L        +     +L  L        + P    E  + LK+L +  N     
Sbjct: 86  EITQNALIS------LPELPASLEYLDACDNRLSTLP----ELPASLKHLDVDNN----- 130

Query: 264 KITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLH 319
           ++T L +    LE +   +     +P             L+ L +    L  LP      
Sbjct: 131 QLTMLPELPALLEYINADNNQLTMLPELP--------TSLEVLSVRNNQLTFLP------ 176

Query: 320 ELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLF 355
           ELP +L    +S + L   P  V  +    +   +F
Sbjct: 177 ELPESLEALDVSTNLLESLP-AVPVRNHHSEETEIF 211

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 36/283 (12%)

Query: 130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS 189
           LL  ++ ++    +LPE    L++L    +R   +  +P+      SLE LD+    + S
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVLS---VRNNQLTFLPELPE---SLEALDVSTNLLES 194

Query: 190 LPKSIWKVKTLR----HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK---KSPPLN 242
           LP    +              +  +        +  ++ +L     + +      S    
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT------HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 243 WLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKE 302
            L   +   +                    +  +  +                       
Sbjct: 249 SLSQQTAQPDY------------HGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 303 LKELYLLGRLPGPLKLHELPPNLR--IFTLSLSYLSEDPMPVLGQLRELKALR--LFAHS 358
            +  +                 L   +   + S   E     L +L     LR   FA +
Sbjct: 297 SQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVA 356

Query: 359 YIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKL 401
               + +C +        L+  +L       + +    AL  L
Sbjct: 357 ADATE-SCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 7e-10
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 38/265 (14%)

Query: 150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIH 209
                    L++  +     +  +L+S++ +   +++I S+ + I  +  +  L+LN   
Sbjct: 19  AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK 76

Query: 210 LQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPLNWLENLSDLKNLGLICNIASLGKIT 266
           L  +  KP    +L NL  L+ L    I   S     L++L  LK+L L  N      I+
Sbjct: 77  L--TDIKPL--TNLKNLGWLF-LDENKIKDLSS----LKDLKKLKSLSLEHN-----GIS 122

Query: 267 NL--IQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELP 322
           ++  +  L  LESL L +  I D        I  L+   +L  L L        ++ ++ 
Sbjct: 123 DINGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDN-----QISDIV 169

Query: 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY--IGEKMTCGNGGFPQLRVLKLW 380
           P   +  L   YLS++ +  L  L  LK L +          K             +K  
Sbjct: 170 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 381 VLKELKEWTIEEGAMTALEKLEIRN 405
               +    I +        ++   
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHL 254

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 44/293 (15%), Positives = 94/293 (32%), Gaps = 41/293 (13%)

Query: 164 IDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPS 222
           +  +P+    L++ E L +    I ++  S +  ++ L+ L L   +  +++     K +
Sbjct: 16  LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID----KEA 68

Query: 223 LTNLRTLWGLSIGK---KSPPLNWLENLSDLKNLGLI-CNIASLGKITNLIQGLTSLESL 278
             NL  L  L +G         +  + L  L  L L  C ++         + L +L  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 279 RLRSINDF-YVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLS 333
            L S N    +    + G LN+   LK +      +  +            L  F+L+ +
Sbjct: 129 DL-SKNQIRSLYLHPSFGKLNS---LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 334 YLSEDPMPVLGQLRE------LKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE 387
            L        G+         L+ L +  + +  +     +    + +   L +   +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 388 WTIEEGAMTALEKLEIRNCPKLKM--------------PTELTKLSNLKELTL 426
                  +   ++       +  +                    L +LK L L
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 34/246 (13%)

Query: 124 AIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLD 181
                + L+VL+L       +  E    L  L+ + L    +  +   +   L  +  +D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 182 MKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP 240
           ++  +I  +    +K ++ L+ L L D  L            + ++  ++ LS       
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-------HFIPSIPDIF-LS------- 389

Query: 241 LNWLENLSDL----KNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF-YVPSDLAIG 295
            N L  L  +      + L  N      I   +  +  L+ L L + N F     D    
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL-NQNRFSSCSGDQTPS 448

Query: 296 SLNNHKELKELYLLGRLPGPLKLHELP-------PNLRIFTLSLSYLSEDPMPVLGQLRE 348
              +   L++L+L   +       EL         +L++  L+ +YL+  P  V   L  
Sbjct: 449 ENPS---LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 349 LKALRL 354
           L+ L L
Sbjct: 506 LRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 55/278 (19%), Positives = 90/278 (32%), Gaps = 36/278 (12%)

Query: 131 LRVLDLED---VYKPVLPETIGKLQLLRYVGLRRTFIDSIP--KSLGDLHSLETLDMKHT 185
           L  L L         +       L+ L  + L +  I S+    S G L+SL+++D    
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 186 NITSLPKSIWKV---KTLRHLYLNDIHLQMSVQKPFVKPS----LTNLRTLWGLSIGKKS 238
            I  + +   +    KTL    L    L   V   + K         L  L     G   
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218

Query: 239 PPLNWLENL---SDLKNLGLICNIASLGKITNLIQGL----------TSLESLRLRSIND 285
                  N    S   +L L  +I   G   + I+            +S+  L L     
Sbjct: 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 286 FYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMP 341
           F + S          K+LK L L    + ++      + L  NL++  LS + L E    
Sbjct: 279 FSLNS----RVFETLKDLKVLNLAYNKINKIADEA-FYGL-DNLQVLNLSYNLLGELYSS 332

Query: 342 VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKL 379
               L ++  + L   ++I            +L+ L L
Sbjct: 333 NFYGLPKVAYIDL-QKNHIAIIQDQTFKFLEKLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 14/183 (7%)

Query: 125 IRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKH 184
           I     +  + L       LP+      L+     R   +D +   L  +  L+ L +  
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQ 435

Query: 185 TNITSLPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK---KSP 239
              +S        +  +L  L+L +  LQ++ +          L  L  L +      S 
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 240 PLNWLENLSDLKNLGLICNIASLGKITNLIQG--LTSLESLRLRSINDFYVPSDLAIGSL 297
           P     +L+ L+ L L  N     ++T L       +LE L +   N    P+     SL
Sbjct: 496 PPGVFSHLTALRGLSLNSN-----RLTVLSHNDLPANLEILDISR-NQLLAPNPDVFVSL 549

Query: 298 NNH 300
           +  
Sbjct: 550 SVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 47/273 (17%), Positives = 82/273 (30%), Gaps = 26/273 (9%)

Query: 175 HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL--WGL 232
                   +  N+T +P+ +    T   L L+  +++      F  P L  L+ L     
Sbjct: 4   FDGRIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSF--PFLEQLQLLELGSQ 58

Query: 233 SIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS--INDFYVP 289
                        NL +L+ L L  + I  L    +  QGL  L  LRL    ++D  + 
Sbjct: 59  YTPLTIDK-EAFRNLPNLRILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLK 115

Query: 290 SDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQ 345
                G   N K L  L L    +  L       +L  +L+    S + +       L  
Sbjct: 116 D----GYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEP 170

Query: 346 LRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN 405
           L+    L  F+ +               +   +  VL+ L    +     T        N
Sbjct: 171 LQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD---VSGNGWTVDITGNFSN 226

Query: 406 CPKLKMPTELTKLSNLKELTLVKKVLKMKPEDA 438
                    L    ++         +K   ++ 
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 47/321 (14%), Positives = 105/321 (32%), Gaps = 20/321 (6%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLED-VYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDL 174
            N L     +  Y  L  +DL     + ++     K+Q L  + +    + ++      +
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 300

Query: 175 HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI 234
            +L+ LD+ H ++  + ++  +   L +LYL+   +           +L NL TL     
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH--HTLKNL-TLSHNDW 357

Query: 235 GKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTS--------LESLRLRSINDF 286
              +       N++         +     ++ + +    S        L+ + L S+ + 
Sbjct: 358 -DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK 416

Query: 287 YVPSDLAIGSLNNHKELKEL--YLLGRLPGPLK-LHELPPNLRIFTLSLSYLSEDPMPVL 343
              +     + +    ++ L  Y+  +   PL+   +L   +      +  L+ + +   
Sbjct: 417 VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQE 476

Query: 344 GQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEI 403
             L+ L A                  G  +       V   LKE    +   T   + E 
Sbjct: 477 QLLQGLHAEIDTNLRRYRLPKD----GLARSSDNLNKVFTHLKERQAFKLRETQARRTEA 532

Query: 404 RNCPKLKMPTELTKLSNLKEL 424
               K     E   ++  K+L
Sbjct: 533 DAKQKETEDLEQENIALEKQL 553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 38/292 (13%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRH 202
              +   + +  + L    I+ I   +    H+++ L M    I  LP  +   V  L  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPLNWLENLSDLKNLGLICNI 259
           L L    L    +  F       L TL  +S   +  +    +  +  + L+NL L  N 
Sbjct: 128 LVLERNDLSSLPRGIFHN--TPKLTTLS-MSNNNL--ERIEDDTFQATTSLQNLQLSSN- 181

Query: 260 ASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKL 318
               ++T++ +  + SL    +         S   + +L     ++EL           +
Sbjct: 182 ----RLTHVDLSLIPSLFHANV---------SYNLLSTLAIPIAVEELDASH-----NSI 223

Query: 319 HELPPNL--RIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRV 376
           + +   +   +  L L + +      L     L  + L +++ + + M        +L  
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLER 282

Query: 377 LKLW--VLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
           L +    L  L  +      +  L+ L++ +   L +     +   L+ L L
Sbjct: 283 LYISNNRLVALNLYG---QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 51/277 (18%), Positives = 103/277 (37%), Gaps = 40/277 (14%)

Query: 173 DLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231
            L++ + +  K++ +  LP ++    + +  L LN   LQ+     +       ++ L+ 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN--DLQIEEIDTYAFAYAHTIQKLY- 105

Query: 232 LSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDFYVP 289
           +     +  P +  +N+  L  L L  N ++SL +   +      L +L + + N+    
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSN-NNL--- 159

Query: 290 SDLAIGSLNNHKELKELYL----LGRLPGPL------------KLHELPPNLRIFTLSLS 333
             +   +      L+ L L    L  +   L             L  L   + +  L  S
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219

Query: 334 Y--LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWT 389
           +  ++    PV  +L  LK      H+ + +     N  +P L  + L    L+++    
Sbjct: 220 HNSINVVRGPVNVELTILK----LQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHP 273

Query: 390 IEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
             +  M  LE+L I N   + +      +  LK L L
Sbjct: 274 FVK--MQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 41/262 (15%), Positives = 92/262 (35%), Gaps = 40/262 (15%)

Query: 150 KLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLND 207
           +   L+ + L    I++I   S   L SLE LD+ +  +++L  S    + +L  L L  
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGL-ICNIASLGKI 265
              + ++ +  +   LT L+ L   ++             L+ L+ L +   ++ S    
Sbjct: 134 NPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-- 190

Query: 266 TNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNL 325
              ++ + ++  L L       +  ++ +   ++   ++ L L               + 
Sbjct: 191 PKSLKSIQNVSHLILHM-KQHILLLEIFVDVTSS---VECLEL--------------RDT 232

Query: 326 RIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGF---PQLRVLKLW-- 380
            + T   S LS      L +    + +++       E +            L  L+    
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKI-----TDESLFQVMKLLNQISGLLELEFSRN 287

Query: 381 VLKELKEWTIEEGAMTALEKLE 402
            LK     ++ +G    L  L+
Sbjct: 288 QLK-----SVPDGIFDRLTSLQ 304

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 18/167 (10%)

Query: 152 QLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIW-KVKTLRHLYLNDIH 209
           +L             I  K    L  LE L++  +++ S        ++ + HL L+   
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH--M 207

Query: 210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLN--------WLENLSDLKNLGLICNIAS 261
            Q  +         +++  L        +   +         L      +N+ +     S
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE--S 265

Query: 262 LGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL 308
           L ++  L+  ++ L  L     N       +  G  +    L++++L
Sbjct: 266 LFQVMKLLNQISGLLELEFSR-NQL---KSVPDGIFDRLTSLQKIWL 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 25/234 (10%), Positives = 61/234 (26%), Gaps = 11/234 (4%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
           L  L+L+  +   +   +     L+ + L    +  +         +  + +++  +  +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 191 PKSIWKVKTLRHLYL--NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS 248
            K++   + L H  L  N  H                ++T+   ++  K       E  +
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH---CGTLRDFFSKNQRVQTVAKQTV--KKLTGQNEEECT 284

Query: 249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL 308
                                  L +L+      ++     ++       N    +E+  
Sbjct: 285 VPTLGHYGAYCCEDLPA-PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 309 LG-RLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI 360
           L  +      ++                L E          EL      A   I
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 30/218 (13%), Positives = 68/218 (31%), Gaps = 28/218 (12%)

Query: 144 LPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSL-PKSIWKVKTLR 201
           + E        +   +  + +     S      +++ LD+    ++ +    +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261
            L L+   L  +         L +L TL  L +      +  L     ++ L    N   
Sbjct: 62  LLNLSSNVLYET-------LDLESLSTLRTLDLNNNY--VQELLVGPSIETLHAANN--- 109

Query: 262 LGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPL 316
              I+ +        +++ L + N   +  DL  G  +    ++ L L    +  +    
Sbjct: 110 --NISRVSCSRGQGKKNIYLAN-NKITMLRDLDEGCRSR---VQYLDLKLNEIDTVNFAE 163

Query: 317 KLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL 354
                   L    L  +++ +  +       +LK L L
Sbjct: 164 LAASS-DTLEHLNLQYNFIYD--VKGQVVFAKLKTLDL 198

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 45/325 (13%), Positives = 105/325 (32%), Gaps = 38/325 (11%)

Query: 116 GNLLKMVI--AIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGD 173
           GN L  +    +  +  L +L+L         + +  L  LR + L   ++  +      
Sbjct: 43  GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97

Query: 174 LHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS 233
             S+ETL   + NI+ +  S    +  +++YL +  + M           + ++ L  L 
Sbjct: 98  GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEG--CRSRVQYLD-LK 152

Query: 234 ---IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF-YVP 289
              I           +   L++L L  N   +  +   +     L++L L S N   ++ 
Sbjct: 153 LNEI-DTVNFAELAASSDTLEHLNLQYN--FIYDVKGQVV-FAKLKTLDLSS-NKLAFMG 207

Query: 290 SDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVL-G 344
                 S      +  + L    L  +   L+      NL  F L  +      +     
Sbjct: 208 P--EFQSAAG---VTWISLRNNKLVLIEKALR---FSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 345 QLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIR 404
           + + ++ +       +  +        P L     +  ++L     +       ++  + 
Sbjct: 260 KNQRVQTVAKQTVKKLTGQ-NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 405 NCPKLK---MPTELTKLSNLKELTL 426
           +    +   +  E    +  +E+  
Sbjct: 319 SGQGSETERLECERENQARQREIDA 343

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 44/275 (16%), Positives = 92/275 (33%), Gaps = 45/275 (16%)

Query: 166 SIPKSLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLT 224
           +I +   + +  +   +  +++     S+      ++ L L+   L             T
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL--APFT 58

Query: 225 NLRTLWGLS---IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLR 281
            L  L  LS   + +       LE+LS L+ L L  N      +   +    S+E+L   
Sbjct: 59  KLELLN-LSSNVLYETLD----LESLSTLRTLDLNNN-----YVQE-LLVGPSIETLHAA 107

Query: 282 SINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSE 337
           + N+    S ++          K +YL    +  L   L        ++   L L+ +  
Sbjct: 108 N-NNI---SRVSCSRGQG---KKNIYLANNKITMLR-DLDEGCR-SRVQYLDLKLNEIDT 158

Query: 338 -DPMPVLGQLRELKALRLFAH---SYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIE 391
            +   +      L+ L L  +     +  ++        +L+ L L    L  +     E
Sbjct: 159 VNFAELAASSDTLEHLNL-QYNFIYDVKGQVVF-----AKLKTLDLSSNKLAFMGP---E 209

Query: 392 EGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
             +   +  + +RN   + +   L    NL+   L
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 50/273 (18%), Positives = 90/273 (32%), Gaps = 34/273 (12%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL 203
                 L+ L  + L    I  I P +   L  LE L +    +  LP+ +   KTL+ L
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL 126

Query: 204 YLNDIHLQMSVQKPFVKPSLTNLRTLW--GLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261
            +++  +    +  F    L  +  +      +          + +  L  + +      
Sbjct: 127 RVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--- 181

Query: 262 LGKITNLIQGL-TSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHE 320
              IT + QGL  SL  L L   N     + +   SL     L +L L         +  
Sbjct: 182 --NITTIPQGLPPSLTELHLDG-NKI---TKVDAASLKGLNNLAKLGLSFN-----SISA 230

Query: 321 LP-------PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAH--SYIGEKMTCGNGGF 371
           +        P+LR   L+ + L + P   L   + ++ + L  +  S IG    C  G  
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 372 PQLRVLKLWVLK--ELKEWTIEEGAMTALEKLE 402
            +        L    ++ W I+      +    
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL 203
             ++  L  L  +GL    I ++   SL +   L  L + +  +  +P  +   K ++ +
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268

Query: 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS-PPLNWLENLSDLKNLGLICNIASL 262
           YL++ ++                      +IG     P  +    +    + L  N    
Sbjct: 269 YLHNNNIS---------------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 263 GKIT-NLIQGLTSLESLRLRS 282
            +I  +  + +    +++L +
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 55/291 (18%), Positives = 99/291 (34%), Gaps = 71/291 (24%)

Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQM 212
           LR V      ++ +PK L        LD+++  IT +       +K L  L L +  +  
Sbjct: 33  LRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 213 SVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-----SDLKNLGLICN-IASLGKIT 266
                F    L  L  L+ LS        N L+ L       L+ L +  N I  + K  
Sbjct: 91  ISPGAFAP--LVKLERLY-LS-------KNQLKELPEKMPKTLQELRVHENEITKVRK-- 138

Query: 267 NLIQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHE 320
           ++  GL  +  + L +  +    + +    G+    K+L  + +    +  +P       
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIEN----GAFQGMKKLSYIRIADTNITTIP-----QG 189

Query: 321 LPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLK 378
           LPP+L    L L    +++     L  L  L  L L                F  +    
Sbjct: 190 LPPSLT--ELHLDGNKITKVDAASLKGLNNLAKLGL---------------SFNSIS--- 229

Query: 379 LWVLKELKEWTIEEGA---MTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
                      ++ G+      L +L + N   +K+P  L     ++ + L
Sbjct: 230 ----------AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 19/153 (12%)

Query: 159 LRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPF 218
           L ++   +I ++   ++SL  + + + N+T L   I     ++ L +N+IH   +   P 
Sbjct: 30  LGQSSTANITEA--QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA--TNYNPI 84

Query: 219 VKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESL 278
               L+NL  L  +     S  +  L  L+ L  L +  +      +T +   L  + S+
Sbjct: 85  SG--LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSI 141

Query: 279 RLRS---INDFYVPSDLAIGSLNNHKELKELYL 308
            L     I D        I  L    ELK L +
Sbjct: 142 DLSYNGAITD--------IMPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 26/210 (12%), Positives = 66/210 (31%), Gaps = 48/210 (22%)

Query: 224 TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRLR 281
           +  +      +G+ S        ++ L  + L         +T+L  I+   +++ L + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-----NVTDLTGIEYAHNIKDLTIN 74

Query: 282 S--INDFYVPSDLAIGSLNNHKELKELYLLG---RLPGPLKLHELPPNLRIFTLSLSYLS 336
           +    +           ++    L+ L ++G          L  L  +L +  +S S   
Sbjct: 75  NIHATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHD 125

Query: 337 EDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMT 396
           +  +  +  L ++ ++ L  +  I +                   +  LK        + 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITD-------------------IMPLKT-------LP 159

Query: 397 ALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
            L+ L I+    +     +     L +L  
Sbjct: 160 ELKSLNIQFD-GVHDYRGIEDFPKLNQLYA 188

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 40/290 (13%), Positives = 87/290 (30%), Gaps = 54/290 (18%)

Query: 144 LPETIGKLQLLRYVGLRRTFIDSIPKSLG-DLHSLETLDMKHTNITSLP-KSIWKVKTLR 201
           + E        +   +  + +     SL     +++ LD+    ++ +    +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261
            L L+   L  +         L +L TL  L +   +  +  L     ++ L    N   
Sbjct: 62  LLNLSSNVLYET-------LDLESLSTLRTLDLN--NNYVQELLVGPSIETLHAANN--- 109

Query: 262 LGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPL 316
              I+ +        +++ L + N   +  DL  G  +    ++ L L    +  +    
Sbjct: 110 --NISRVSCSRGQGKKNIYLAN-NKITMLRDLDEGCRSR---VQYLDLKLNEIDTVNFAE 163

Query: 317 KLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRV 376
                   L    L  +++ +  +       +LK L L             N        
Sbjct: 164 LAASS-DTLEHLNLQYNFIYD--VKGQVVFAKLKTLDL-----------SSN-------- 201

Query: 377 LKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
                  +L     E  +   +  + +RN   + +   L    NL+   L
Sbjct: 202 -------KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
           L  L+L+  +   +   +     L+ + L    +  +         +  + +++  +  +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 191 PKSIWKVKTLRHLYL--NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS 248
            K++   + L H  L  N  H                ++T+   ++ K +        + 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH---CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 249 DLKNLGLIC 257
            L + G  C
Sbjct: 287 TLGHYGAYC 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 31/273 (11%), Positives = 82/273 (30%), Gaps = 64/273 (23%)

Query: 166 SIPKSLGDLHSLETLDMKHTNITSLPKSIWKV-KTLRHLYLNDIHLQMSVQKPFVKPSLT 224
           +I +   + +  +   +  +++     S+ +    ++ L L+                  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG----------------N 44

Query: 225 NLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRLRS 282
            L  +              L   + L+ L L  N      +     ++ L++L +L L +
Sbjct: 45  PLSQI----------SAADLAPFTKLELLNLSSN-----VLYETLDLESLSTLRTLDL-N 88

Query: 283 INDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSED 338
            N         +  L     ++ L+     + R+             +   L+ + ++  
Sbjct: 89  NN--------YVQELLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITML 135

Query: 339 PMPVLGQLRELKALRLFAH---SYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEG 393
                G    ++ L L        +       +     L  L L    + ++K   +   
Sbjct: 136 RDLDEGCRSRVQYLDL-KLNEIDTVNFAELAAS--SDTLEHLNLQYNFIYDVKGQVV--- 189

Query: 394 AMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
               L+ L++ +     M  E    + +  ++L
Sbjct: 190 -FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 41/241 (17%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS 170
            A +     K          L +L+L         + +  L  LR + L   ++  +   
Sbjct: 50  SAADLAPFTK----------LELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV- 97

Query: 171 LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW 230
                S+ETL   + NI+ +  S    +  +++YL +  + M           + ++ L 
Sbjct: 98  ---GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEG--CRSRVQYLD 150

Query: 231 GLS---IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF- 286
            L    I           +   L++L L  N   +  +   +     L++L L S N   
Sbjct: 151 -LKLNEI-DTVNFAELAASSDTLEHLNLQYN--FIYDVKGQVV-FAKLKTLDLSS-NKLA 204

Query: 287 YVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPV 342
           ++       S      +  + L    L  +   L+      NL  F L  +      +  
Sbjct: 205 FMGP--EFQSAAG---VTWISLRNNKLVLIEKALR---FSQNLEHFDLRGNGFHCGTLRD 256

Query: 343 L 343
            
Sbjct: 257 F 257

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 48/299 (16%), Positives = 93/299 (31%), Gaps = 22/299 (7%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL 203
              I  L  LR + +    I  +  S       LE LD+ H  +  +         L+HL
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHL 95

Query: 204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN---- 258
            L+      ++       +++ L+ L  LS    +   +  + +L+  K L ++      
Sbjct: 96  DLSFNAFD-ALPICKEFGNMSQLKFLG-LSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 259 ---IASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP 315
                 L         +    +     I D  V +   +  L+N K + E          
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL-ELSNIKCVLEDNKCSYFLSI 212

Query: 316 LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG----EKMTCGNGGF 371
           L   +  P L   TL+    + +    + QL     +  F+ S +           +   
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 372 PQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN--CPKLKMPTEL--TKLSNLKELTL 426
             L+ L +  +        +         + I+N      +M   L  +K+S    L  
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 52/293 (17%), Positives = 85/293 (29%), Gaps = 35/293 (11%)

Query: 166 SIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT 224
            +PK L        L++    I+ L    I  +  LR L ++   +Q      F      
Sbjct: 14  HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF--NQ 69

Query: 225 NLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
            L  L  LS  K      +   N   LK+L L  N   +L  I      ++ L+ L L S
Sbjct: 70  ELEYLD-LSHNKLVKISCHPTVN---LKHLDLSFNAFDALP-ICKEFGNMSQLKFLGL-S 123

Query: 283 IN-----DFYVPSDL-----AIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSL 332
                       + L      +     + E ++   L        LH + P  + F   L
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN-TESLHIVFPTNKEFHFIL 182

Query: 333 SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE 392
               +    +  +L  +K +           +       P+L  L L  ++      I  
Sbjct: 183 DVSVKTVANL--ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 393 GAM---TALEKLEIRNCPKLKMPTE------LTKLSNLKELTLVKKVLKMKPE 436
             +   T +    I N                T L  L    +V  V      
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 49/317 (15%), Positives = 107/317 (33%), Gaps = 23/317 (7%)

Query: 131 LRVLDLEDVYKPVLPET--IGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNI 187
           L+ LDL       LP     G +  L+++GL  T ++      +  L+  + L +     
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 188 TSLPK----SIWKVKTLRHLYLNDIHLQMSVQKPFVKP---SLTNLR-TLWGLSIGKKSP 239
                      +  ++L  ++  +      +           L+N++  L          
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 240 PLNWLENLSDLKNLGLICNIASLGKITNLIQGL--TSLESLRLRSIN-DFYVPSDLAIGS 296
            L  L+    L NL L     +      ++Q +  T++    + ++     +       S
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 297 LNNHKELKELYLLGRL--PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL 354
             + K L    ++  +       ++E+  N+ I   ++S      M    ++     L  
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 355 FAHSYIGEKMTCGN-GGFPQLRVLKLWV--LKELKEWTIEEGAMTALEKLEIRNCP--KL 409
              + +       N G   +L  L L +  LKEL +       M +L++L+I        
Sbjct: 332 --SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 410 KMPTELTKLSNLKELTL 426
           +   + +   +L  L +
Sbjct: 390 EKKGDCSWTKSLLSLNM 406

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 30/192 (15%)

Query: 130 LLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNI 187
            + + +       ++      K+    ++      +     ++ G L  LETL ++   +
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 188 TSLPKSI---WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL 244
             L K      ++K+L+ L ++   +    +         +L +L  +S         + 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEK-KGDCSWTKSLLSLN-MS-SNILTDTIFR 417

Query: 245 ENLSDLKNLGLICNIASLGKITNLIQG---LTSLESL-----RLRSINDFYVPSDLAIGS 296
                +K L L  N     KI ++ +    L +L+ L     +L+S+ D         G 
Sbjct: 418 CLPPRIKVLDLHSN-----KIKSIPKQVVKLEALQELNVASNQLKSVPD---------GI 463

Query: 297 LNNHKELKELYL 308
            +    L++++L
Sbjct: 464 FDRLTSLQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 36/259 (13%), Positives = 85/259 (32%), Gaps = 41/259 (15%)

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG 235
           +L  ++    +   + + +W   T+ +  ++++ LQ  +       S T+L+ L    + 
Sbjct: 226 TLNNIETTWNSFIRILQLVWH-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 236 KK---SPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDL 292
                 P     E  S++       +   +  +      ++    L   S N     +D 
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKISPFLHLDF-SNNLL---TDT 339

Query: 293 AIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMP-VLGQLR 347
              +  +  EL+ L L    L  L    ++     +L+   +S + +S D         +
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 348 ELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP 407
            L +L +             +          L                  ++ L++ +  
Sbjct: 400 SLLSLNM------------SSNILTDTIFRCLPPR---------------IKVLDLHSNK 432

Query: 408 KLKMPTELTKLSNLKELTL 426
              +P ++ KL  L+EL +
Sbjct: 433 IKSIPKQVVKLEALQELNV 451

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 43/214 (20%), Positives = 65/214 (30%), Gaps = 54/214 (25%)

Query: 154 LRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQ 211
            RY+ L    I  I   +   LH LE L +   +I  +   +   + +L  L L D    
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD---- 132

Query: 212 MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNL--- 268
                         L  +          P    E LS L+ L L  N      I ++   
Sbjct: 133 ------------NWLTVI----------PSGAFEYLSKLRELWLRNN-----PIESIPSY 165

Query: 269 -IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELP----- 322
               + SL  L L  +        ++ G+      LK L L         + ++P     
Sbjct: 166 AFNRVPSLMRLDLGELKKL---EYISEGAFEGLFNLKYLNLGM-----CNIKDMPNLTPL 217

Query: 323 PNLRIFTLSLSY--LSEDPMPVLGQLRELKALRL 354
             L    L +S     E        L  LK L +
Sbjct: 218 VGLE--ELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 164 IDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPS 222
           ++ I + +   L +L+ L++   NI  +P ++  +  L  L ++  H        F    
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFH--G 240

Query: 223 LTNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRL 280
           L++L+ LW +   +      N  + L+ L  L L  N ++SL    +L   L  L  L L
Sbjct: 241 LSSLKKLW-VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH--DLFTPLRYLVELHL 297

Query: 281 RS 282
             
Sbjct: 298 HH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLED-VYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGD 173
              +K +  +     L  L++    +  + P +   L  L+ + +  + +  I + +   
Sbjct: 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 174 LHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLND 207
           L SL  L++ H N++SLP  ++  ++ L  L+L+ 
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 46/206 (22%), Positives = 66/206 (32%), Gaps = 45/206 (21%)

Query: 154 LRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQ 211
            R + L    I  I   S   L  LE L +   +I ++   +   +  L  L L D    
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD---- 121

Query: 212 MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQ 270
                         L T+          P      LS LK L L  N I S+   +    
Sbjct: 122 ------------NRLTTI----------PNGAFVYLSKLKELWLRNNPIESIP--SYAFN 157

Query: 271 GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHELPPNLR 326
            + SL  L L  +      S ++ G+      L+ L L    L  +P    L      L 
Sbjct: 158 RIPSLRRLDLGELKRL---SYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL----IKLD 210

Query: 327 IFTLS---LSYLSEDPMPVLGQLREL 349
              LS   LS +       L  L++L
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKL 236

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 51/243 (20%)

Query: 124 AIRGYRLLRVLDLEDVY-KPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLD 181
           + +  R L +L L   + + +       L  L  + L    + +IP  +   L  L+ L 
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 182 MKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP 240
           +++  I S+P   +  + +LR L L ++              L+ +              
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGEL------------KRLSYI-------------S 177

Query: 241 LNWLENLSDLKNLGLICNIASLGKITNL--IQGLTSLESLRLRSINDFYVPSDLAIGSLN 298
               E LS+L+ L L         +  +  +  L  L+ L L   N     S +  GS  
Sbjct: 178 EGAFEGLSNLRYLNLAMC-----NLREIPNLTPLIKLDELDLSG-NHL---SAIRPGSFQ 228

Query: 299 NHKELKELYLLGRLPGPLKLHELP-------PNLRIFTLSLSYLSEDPMPVLGQLRELKA 351
               L++L+++       ++  +         +L    L+ + L+  P  +   L  L+ 
Sbjct: 229 GLMHLQKLWMIQ-----SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 352 LRL 354
           + L
Sbjct: 284 IHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 25/179 (13%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDLED----VYKPVLPETIGKLQLLRYVGLRRTFIDS 166
           P G F  L K          L+ L L +             I  L+ L    L+R  +  
Sbjct: 128 PNGAFVYLSK----------LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSY 175

Query: 167 IPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTN 225
           I + +   L +L  L++   N+  +P ++  +  L  L L+  HL       F    L +
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF--QGLMH 232

Query: 226 LRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
           L+ LW +   + +    N  +NL  L  + L  N +  L    +L   L  LE + L  
Sbjct: 233 LQKLW-MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH--DLFTPLHHLERIHLHH 288

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 51/309 (16%), Positives = 106/309 (34%), Gaps = 43/309 (13%)

Query: 131 LRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNIT 188
            +++  ++     LP   +   + +  + L    I+ I   +    H+++ L M    I 
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 189 SLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK---KSPPLNWL 244
            LP  +   V  L  L L    L         +    N   L  LS+     +    +  
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 245 ENLSDLKNLGLICNIASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303
           +  + L+NL L  N     ++T++ +  + SL    +         S   + +L     +
Sbjct: 162 QATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANV---------SYNLLSTLAIPIAV 207

Query: 304 KELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY 359
           +EL      +  + GP+        L    L L + +      L     L  + L +++ 
Sbjct: 208 EELDASHNSINVVRGPVN-----VELT--ILKLQHNNLTDTAWLLNYPGLVEVDL-SYNE 259

Query: 360 IGEKMTCGNGGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTK 417
           + + M        +L  L +    L  L    +    +  L+ L++ +   L +     +
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

Query: 418 LSNLKELTL 426
              L+ L L
Sbjct: 317 FDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLED-VYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDL 174
            N L     +  Y  L  +DL     + ++     K+Q L  + +    + ++      +
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 294

Query: 175 HSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
            +L+ LD+ H ++  + ++  +   L +LYL+ 
Sbjct: 295 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 51/277 (18%), Positives = 103/277 (37%), Gaps = 40/277 (14%)

Query: 173 DLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG 231
            L++ + +  K++ +  LP ++    + +  L LN   LQ+     +       ++ L+ 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN--DLQIEEIDTYAFAYAHTIQKLY- 99

Query: 232 LSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDFYVP 289
           +     +  P +  +N+  L  L L  N ++SL +   +      L +L + + N+    
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSN-NNL--- 153

Query: 290 SDLAIGSLNNHKELKELYL----LGRLPGPL------------KLHELPPNLRIFTLSLS 333
             +   +      L+ L L    L  +   L             L  L   + +  L  S
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213

Query: 334 Y--LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW--VLKELKEWT 389
           +  ++    PV  +L  LK      H+ + +     N  +P L  + L    L+++    
Sbjct: 214 HNSINVVRGPVNVELTILK----LQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHP 267

Query: 390 IEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
             +  M  LE+L I N   + +      +  LK L L
Sbjct: 268 FVK--MQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 44/187 (23%)

Query: 148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
           +  +  L +  +    + ++        ++E LD  H +I  +   +     L  L L  
Sbjct: 182 LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQH 235

Query: 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGK---KSPPLNWLENLSDLKNLGLICN------ 258
            +L  +         L N   L  + +     +    +    +  L+ L +  N      
Sbjct: 236 NNLTDT-------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288

Query: 259 --IASLGKITNL-------------IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKEL 303
                +  +  L                   LE+L L   N       L + + +    L
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH-NSI---VTLKLSTHHT---L 341

Query: 304 KELYLLG 310
           K L L  
Sbjct: 342 KNLTLSH 348

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 44/284 (15%)

Query: 148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
           + +   L Y+      + ++   +  L  L  L+     +T L  S  +   L +L    
Sbjct: 81  LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS--QNPLLTYLNCAR 136

Query: 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITN 267
             L             T L  L      K +     +   + L  L    N     KIT 
Sbjct: 137 NTL-----TEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-----KITE 184

Query: 268 L-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELP---- 322
           L +     L  L   + N+    + L +        L  L          KL E+     
Sbjct: 185 LDVSQNKLLNRLNCDT-NNI---TKLDLNQNIQ---LTFLDCSS-----NKLTEIDVTPL 232

Query: 323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVL 382
             L  F  S++ L+E  +  L +L  L       H    + +        QL   +    
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTL-------HCIQTDLLEIDLTHNTQLIYFQAEGC 285

Query: 383 KELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
           +++KE  +     T L  L+ +    +    +L++   L  L L
Sbjct: 286 RKIKELDV--THNTQLYLLDCQAA-GITE-LDLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 50/312 (16%), Positives = 86/312 (27%), Gaps = 76/312 (24%)

Query: 147 TIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206
           +  +L  L  +    + I  +   +  L  L  L     NIT+L   + +   L +L  +
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACD 93

Query: 207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKIT 266
              L            +T L  L  L+        N L  L   +N  L     +   +T
Sbjct: 94  SNKLT--------NLDVTPLTKLTYLNCDT-----NKLTKLDVSQNPLLTYLNCARNTLT 140

Query: 267 NL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL---------LGRLPGPL 316
            + +   T L  L             +    +    +L  L           + +     
Sbjct: 141 EIDVSHNTQLTELDCHLNK------KITKLDVTPQTQLTTLDCSFNKITELDVSQNK--- 191

Query: 317 KLHEL--------------PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE 362
            L+ L                 L     S + L+E     +  L +L             
Sbjct: 192 LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDC-------- 240

Query: 363 KMTCGNGGFPQLRVLKLWVLKELKE--------WTIEEGAMTALEKLEIRNCPKLKMPTE 414
                N     L  L +  L +L            I+    T L   +   C K+K   +
Sbjct: 241 ---SVN----PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK-ELD 292

Query: 415 LTKLSNLKELTL 426
           +T  + L  L  
Sbjct: 293 VTHNTQLYLLDC 304

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 28/213 (13%)

Query: 146 ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205
                L       L +  +  +  S  +L  ++  +  ++NI SL   +     L+ L+L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHL 70

Query: 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKI 265
           +  H Q+S   P     LT L  L  ++        N L+NL+ + +  L        ++
Sbjct: 71  S--HNQISDLSPLK--DLTKLEELS-VNR-------NRLKNLNGIPSACLSRLFLDNNEL 118

Query: 266 TNL--IQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHKELKELYLLG-RLPGPLKLHE 320
            +   +  L +LE L +R+  +          I  L    +L+ L L G  +     L  
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLKS--------IVMLGFLSKLEVLDLHGNEITNTGGLTR 170

Query: 321 LPPNLRIFTLSLSYLSEDPMPVLGQLRELKALR 353
           L   +    L+      +P+    +L     ++
Sbjct: 171 L-KKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 131 LRVLDLEDVYKPVLPETI-GKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS 189
             +L L +                L  + L R  +  +    G L  L TLD+ H  + S
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS 91

Query: 190 LPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLENLS 248
           LP     +  L  L ++   L            L  L+ L+ L   + K+ P   L    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRG--LGELQELY-LKGNELKTLPPGLLTPTP 148

Query: 249 DLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
            L+ L L  N +  L     L+ GL +L++L L+ 
Sbjct: 149 KLEKLSLANNNLTELPA--GLLNGLENLDTLLLQE 181

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 41/216 (18%)

Query: 150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIH 209
            L     +   ++ +     +  DL  + TL    T +T++   +  +  L  L L D  
Sbjct: 17  ALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ 74

Query: 210 LQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPLNWLENLSDLKNLGLICNIASLGKIT 266
           +  +   P     LT +  L  LS   +   S     +  L  +K L L        +IT
Sbjct: 75  I--TDLAPLKN--LTKITELE-LSGNPLKNVSA----IAGLQSIKTLDLTST-----QIT 120

Query: 267 NL--IQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKL 318
           ++  + GL++L+ L L    I +        I  L     L+ L +    +  L     L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITN--------ISPLAGLTNLQYLSIGNAQVSDLTP---L 169

Query: 319 HELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL 354
             L   L       + +S+  +  L  L  L  + L
Sbjct: 170 ANL-SKLTTLKADDNKISD--ISPLASLPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 24/177 (13%)

Query: 116 GNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLH 175
           GN LK V AI G + ++ LDL       +   +  L  L+ + L    I +I   L  L 
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLT 151

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS-- 233
           +L+ L + +  ++ L   +  +  L  L  +    ++S   P    SL NL  +  L   
Sbjct: 152 NLQYLSIGNAQVSDLT-PLANLSKLTTLKAD--DNKISDISPLA--SLPNLIEVH-LKNN 205

Query: 234 -IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLI----QGLTSLESLRLRSIND 285
            I   SP    L N S+L  + L         ITN        L     ++  S   
Sbjct: 206 QISDVSP----LANTSNLFIVTLTNQ-----TITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 50/254 (19%), Positives = 93/254 (36%), Gaps = 51/254 (20%)

Query: 146 ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL 205
            +           L++  +     +  +L+S++ +   +++I S+ + I  +  +  L+L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFL 75

Query: 206 NDIHLQMSVQKPFVKPSLTNLRTLWGLS---IGKKSPPLNWLENLSDLKNLGL----ICN 258
           N   L  +  KP    +L NL  L+ L    +   S     L++L  LK+L L    I +
Sbjct: 76  NGNKL--TDIKPL--ANLKNLGWLF-LDENKVKDLSS----LKDLKKLKSLSLEHNGISD 126

Query: 259 IASLGKITNL---------------IQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHK 301
           I  L  +  L               +  LT L++L L    I+D        I  L    
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--------IVPLAGLT 178

Query: 302 ELKELYL----LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAH 357
           +L+ LYL    +  L     L     NL +  L        P+     L     ++    
Sbjct: 179 KLQNLYLSKNHISDLRALAGL----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 358 SYIGEKMTCGNGGF 371
           S +  ++   +G +
Sbjct: 235 SLVTPEIISDDGDY 248

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 38/279 (13%)

Query: 145 PETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL 203
            +    LQ L  + L    I  I  K+   L  L+ L +   ++  +P ++    +L  L
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128

Query: 204 YLNDIHLQMSVQKPFVKPSLTNLRTLW--GLSIGKKSPPLNWLENLSDLKNLGLICNIAS 261
            ++D  ++   +  F    L N+  +   G  +          + L  L  L +      
Sbjct: 129 RIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEA--- 182

Query: 262 LGKITNLIQGL-TSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPL 316
             K+T + + L  +L  L L   N       + +  L  + +L  L L    +  +    
Sbjct: 183 --KLTGIPKDLPETLNELHLDH-NKI---QAIELEDLLRYSKLYRLGLGHNQIRMIE-NG 235

Query: 317 KLHELPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRLFAH--SYIGEKMTCGNGGF- 371
            L  L P LR   L L    LS  P   L  L+ L+ + L  +  + +G    C  G   
Sbjct: 236 SLSFL-PTLR--ELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 372 --PQLRVLKLWVLKELKEWTIEEGA---MTALEKLEIRN 405
                  + L     +  W ++      +T    ++  N
Sbjct: 292 KRAYYNGISL-FNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 57/289 (19%), Positives = 101/289 (34%), Gaps = 68/289 (23%)

Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQM 212
           LR V      + ++PK +        LD+++ +I+ L K     ++ L  L L +  +  
Sbjct: 35  LRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 213 SVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-----SDLKNLGLICN-IASLGKIT 266
             +K F    L  L+ L+ +S        N L  +     S L  L +  N I  + K  
Sbjct: 93  IHEKAFSP--LRKLQKLY-IS-------KNHLVEIPPNLPSSLVELRIHDNRIRKVPK-- 140

Query: 267 NLIQGLTSLESLRLRS--INDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHE 320
            +  GL ++  + +    + +       A   L     L  L +    L  +P      +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGLK----LNYLRISEAKLTGIP-----KD 190

Query: 321 LPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW 380
           LP  L    L  + +    +  L +  +L  L L             N    Q+R     
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL-----------GHN----QIR----- 230

Query: 381 VLKELKEWTIEEGA---MTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
                    IE G+   +  L +L + N    ++P  L  L  L+ + L
Sbjct: 231 --------MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 124 AIRGYRLLRVLDLEDVYK--PVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETL 180
           A  G  LL  LDL D  +   V P T   L  L  + L R  +  +       L +L+ L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 181 DMKHTNITSLPKSIW-KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KS 238
            ++   + +LP   +  +  L HL+L+   +    ++ F    L +L  L  L   +   
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--LHSLDRLL-LHQNRVAH 191

Query: 239 PPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
              +   +L  L  L L  N +++L      +  L +L+ LRL  
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 27/203 (13%)

Query: 164 IDSIPKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPS 222
           + ++P  +    + + + +    I+ +P  S    + L  L+L+   L       F    
Sbjct: 23  LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--G 78

Query: 223 LTNLRTLWGLSIGKK--SPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLR 279
           L  L  L  LS   +  S        L  L  L L    +  LG    L +GL +L+ L 
Sbjct: 79  LALLEQLD-LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLY 135

Query: 280 LRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP-------NLRIFTLSL 332
           L+  N       L   +  +   L  L+L G      ++  +P        +L    L  
Sbjct: 136 LQD-NAL---QALPDDTFRDLGNLTHLFLHGN-----RISSVPERAFRGLHSLDRLLLHQ 186

Query: 333 SYLSEDPMPVLGQLRELKALRLF 355
           + ++         L  L  L LF
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLF 209

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 22/293 (7%)

Query: 150 KLQLLRYVGLRRTFIDSIPKSLGD-LHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI 208
            L  LR + L    I S+   +      LE LD+ H  + ++      + +LRHL L+  
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN 131

Query: 209 HLQ-MSVQKPFVKPSLTNLRTLWGLSIGK-KSPPLNWLENLS-DLKNLGLICNIASLGKI 265
               + V K F    LT L  L  LS  K +   L  + +L      L L+      G+ 
Sbjct: 132 DFDVLPVCKEFGN--LTKLTFLG-LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 266 TNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPLKLHEL 321
            +L    T++  L     + F V  ++++ +L  H +L  + L      RL   L     
Sbjct: 189 ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL-GHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 322 PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFA--HSYIGEKMTCGNGGFP--QLRVL 377
            P L   TL     +      L Q    + +      +  I E++      +    L+ L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 378 KLWVLKELKEWTIEEGAMTALEKLEIRN--CPKLKMPTEL--TKLSNLKELTL 426
            +  +K       +E   +   ++ I+            +     S+   L  
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 43/274 (15%), Positives = 90/274 (32%), Gaps = 34/274 (12%)

Query: 155 RYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWK-VKTLRHLYLNDIHLQMS 213
           R    + + +  IP  L    +   L    T +  + K  +     L  + ++   + + 
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LE 68

Query: 214 VQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLT 273
           V +  V  +L  L  +              +E  ++L  +                Q L 
Sbjct: 69  VIEADVFSNLPKLHEIR-------------IEKANNLLYIN-----------PEAFQNLP 104

Query: 274 SLESLRLRSINDFYVPSDLAIGSLNNHK-ELKELYLLGRLPGPLKLHELPPNLRIFTLSL 332
           +L+ L + +    ++P    I SL     ++++   +  +        L     I  L+ 
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNK 163

Query: 333 SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE 392
           + + E         + L  L L  ++ +       N  F       +  +   +  ++  
Sbjct: 164 NGIQEIHNSAFNGTQ-LDELNLSDNNNL---EELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 393 GAMTALEKLEIRNCPKLKMPTELTKLSNLKELTL 426
             +  L+KL  R+   LK    L KL  L E +L
Sbjct: 220 YGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 30/226 (13%)

Query: 124 AIRGYRLLRVLDLED--VYKPVLPETIGKLQLLRYVGLRRT-FIDSIPKS-LGDLHSLET 179
           A  G+  L  +++    V + +  +    L  L  + + +   +  I      +L +L+ 
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 180 LDMKHTNITSLPKSI-WKVKTLRHLYLND-IHLQMSVQKPFVKPSLTNLRTLW----GL- 232
           L + +T I  LP            L + D I++    +  FV  S      LW    G+ 
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQ 167

Query: 233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDL 292
            I   +     L+ L+   N     N+  L    ++  G +    L +       +PS  
Sbjct: 168 EIHNSAFNGTQLDELNLSDN----NNLEELPN--DVFHGASGPVILDISRTRIHSLPS-- 219

Query: 293 AIGSLNNHKELKELYL--LGRLPGPLKLHELPPNLRIFTLSLSYLS 336
               L N K+L+      L +LP   KL      L     SL+Y S
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPTLEKL----VALM--EASLTYPS 257

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%)

Query: 111 PAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETI-GKLQLLRYVGLRRTFIDSIPK 169
           P+  F  L K          LR+L L D     LP  I  +L+ L  + +    + ++P 
Sbjct: 53  PSKAFHRLTK----------LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 170 SLGD-LHSLETLDMKHTNITSLPKSIW-KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR 227
            + D L +L  L +    + SLP  ++  +  L +L L    LQ S+    V   LT+L+
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLP-KGVFDKLTSLK 160

Query: 228 TLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRS 282
            L  L   + K  P    + L++LK L L  N +  + +       L  L+ L+L+ 
Sbjct: 161 ELR-LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQE 214

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 14/192 (7%)

Query: 124 AIRGYRLLRVLDLEDVYKPVLPETI-GKLQLLRYVGLRRTFIDSIPKSL-GDLHSLETLD 181
           +   +  L+VLDL       + +     L  L  + L    I S+       L SL+ L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 182 MKHTNITSLPKSIW-KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KSP 239
              TN+ SL       +KTL+ L +    +Q S + P    +LTNL  L  LS  K +S 
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLD-LSSNKIQSI 164

Query: 240 PLNWLENLSDLKNLGLICNIASLGKITNLIQGL---TSLESLRLRSINDFYVPSDLAIGS 296
               L  L  +  L L  ++ SL  +  +  G      L+ L L +     VP     G 
Sbjct: 165 YCTDLRVLHQMPLLNLSLDL-SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD----GI 219

Query: 297 LNNHKELKELYL 308
            +    L++++L
Sbjct: 220 FDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 18/189 (9%)

Query: 176 SLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI 234
           S + LD+    +  L   S +    L+ L L+   +Q      +    L++L TL  L+ 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSHLSTLI-LTG 85

Query: 235 GK-KSPPLNWLENLSDLKNLGLI-CNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDL 292
              +S  L     LS L+ L  +  N+ASL      I  L +L+ L +            
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 293 AIGSLNNHKELKELYL----LGRLPGPL--KLHELPPNLRIFTLSLSYLSEDPMPVLGQL 346
              +L N   L+ L L    +  +       LH++P       LSL+ ++        ++
Sbjct: 144 YFSNLTN---LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 347 RELKALRLF 355
           R LK L L 
Sbjct: 201 R-LKELALD 208

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 65/352 (18%), Positives = 110/352 (31%), Gaps = 47/352 (13%)

Query: 124 AIRGYRLLRVLDLED--VYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETL 180
           +    + L+ L +E       +   T   L  L  + L       +       L +LE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 181 DMKHTNITS--LPKSIW-KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK- 236
            +   N+    L  + +  + +L  L L D +++  +Q      ++     L  L+  K 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLD-LTFNKV 166

Query: 237 KSPPLNWLENL--SDLKNLGLICNI---ASLGKITNLIQG----LTSLESLRLRSINDFY 287
           KS     L N        L L        +   +     G     TS+ +L L       
Sbjct: 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 288 VPSDLAIGSLNNHK----ELKELYLLGRLPGPLKLHELP---------PNLRIFTLSLSY 334
             +     ++   K     L   Y +G   G     +             ++   LS S 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 335 LSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN-GGFPQLRVLKLW--VLKELKEWTIE 391
           +      V     +L+ L L A + I  K+      G   L  L L    L  +     +
Sbjct: 287 IFALLKSVFSHFTDLEQLTL-AQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSI-----D 339

Query: 392 EGA---MTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKKVLKMKPEDA 438
                 +  LE L++     ++         L NLKEL L    LK  P+  
Sbjct: 340 SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 41/282 (14%), Positives = 92/282 (32%), Gaps = 37/282 (13%)

Query: 176 SLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI 234
            +  +D+   +I  L   S  +++ L+ L +      + ++       L++L  L  L  
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILK-LDY 88

Query: 235 GK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDFYVPSDL 292
            +           L++L+ L L    +       N  + LTSLE L LR  N   +    
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 293 AIGSLNNHKELKELYL------------LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPM 340
              ++        L L            L    G         ++ +  ++  +L  +  
Sbjct: 149 FFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 341 PVLGQLRELKALRLFAH--SYIGEKMTCGNGGFPQLRVLKLW------------VLKELK 386
               +   +  L L  +       K         +++ L L               K+  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 387 EWTIEEGAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTL 426
            +T +    + ++  ++    K+     +  +  ++L++LTL
Sbjct: 266 NFTFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTL 306

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 21/220 (9%)

Query: 131 LRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSI--PKSLGDLHSLETLDMKHTNI 187
           +  +DL       L ET   +LQ L+++ + +     +    +   L SL  L + +   
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 188 TSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK-KS-PPLNWL 244
             L       +  L  L L   +L  +V        LT+L  L  L     K   P ++ 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV-LRDNNIKKIQPASFF 150

Query: 245 ENLSDLKNLGLICN-IASL--GKITNLIQGLTSLESLRLRSINDFYVP----SDLAIGSL 297
            N+     L L  N + S+    + N          LRL SI    +          G+ 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNF--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 298 NNHKELKELYL----LGRLPGPLKLHELPPNLRIFTLSLS 333
             +  +  L L            +  +     +I +L LS
Sbjct: 209 FKNTSITTLDLSGNGFKESM-AKRFFDAIAGTKIQSLILS 247

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 145 PETIGKLQLLRYVGLRR-TFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLR 201
              +   + L  + +     +  +    L  L  L  L +  + +  +          L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 202 HLYLNDIHLQMSVQKPFVKPSLTNL 226
            L L+   L+    K     SL  L
Sbjct: 84  RLNLSFNALESLSWKTVQGLSLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 117 NLLKMVIAIRGYRLLRVLDLEDVYKPVL----PETIGKLQLLRYVGLRRTFIDSIPK-SL 171
             L  +  + G   L  L +E   +  L       +  L  LR + + ++ +  +   + 
Sbjct: 19  GALDSLHHLPGAENLTELYIE--NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
                L  L++    + SL     +  +L+ L L+ 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 26/180 (14%)

Query: 166 SIPKSLGDLHSLETLDMKHTNITSLPKSI--WKVKTLRHLYLNDIHLQMSVQKPFVKPSL 223
           ++P+SL        LD+ H N++ L       ++  L  L L+  HL     + FV   +
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--V 87

Query: 224 TNLRTLWGLSIGK-KSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLR 281
            NLR L  LS     +       +L  L+ L L  N I  + +  N  + +  L+ L L 
Sbjct: 88  PNLRYLD-LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLS 144

Query: 282 SINDF-YVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELP-------PNLRIFTLSLS 333
             N     P +  I   N   +L  L L        KL +LP       P      L L 
Sbjct: 145 Q-NQISRFPVE-LIKDGNKLPKLMLLDLSSN-----KLKKLPLTDLQKLPAWVKNGLYLH 197

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 150 KLQLLRYVGLRRTFIDSIPKSLGD-LHSLETLDMKHTNITSLPKSIW-KVKTLRHLYLND 207
             + LR + L    I  +       L SL +L +    IT LPKS++  + +L+ L LN 
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113

Query: 208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLI-------CNIA 260
             +   ++       L NL  L       ++        L  ++ + L        C++ 
Sbjct: 114 NKIN-CLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171

Query: 261 SLGK 264
            L  
Sbjct: 172 WLAD 175

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 78  EHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLE 137
           ++   L ++ P      + L S                  LL+  +    Y  +RVL L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSK----------------FLLENSVLKMEYADVRVLHLA 449

Query: 138 DVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKV 197
                 +   + +L L+ ++ L    + ++P +L  L  LE L      + ++   +  +
Sbjct: 450 H-KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANL 507

Query: 198 KTLRHLYLNDIHL-QMSVQKPFVKPSLTNLRTLW 230
             L+ L L +  L Q +  +P V      L  L 
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVS--CPRLVLLN 539

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 47/196 (23%)

Query: 180 LDMKHTNITSLPKSIWKVKTLRHLYL--NDI----HLQMSVQKPFVKPSLTNLRTLWGLS 233
           L      I  +  ++  +K  +HL L  N+I     L            + NLR L  L 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS----------GMENLRILS-LG 78

Query: 234 ---IGKKSPPLNWLENLSD-LKNLGLICNIASLGKITNL--IQGLTSLESLRLRS--IND 285
              I K    +  L+ ++D L+ L +  N     +I +L  I+ L +L  L + +  I +
Sbjct: 79  RNLIKK----IENLDAVADTLEELWISYN-----QIASLSGIEKLVNLRVLYMSNNKITN 129

Query: 286 FYVPSDLAIGSLNNHKELKELYLLG-RLPGPLKLHELPPNLRIFTL----SLSYLSEDPM 340
           +       I  L    +L++L L G  L    K +      RI  +    +L  L  D M
Sbjct: 130 W-----GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL--DGM 182

Query: 341 PVLGQLRELKALRLFA 356
           PV    RE +A     
Sbjct: 183 PVDVDERE-QANVARG 197

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 27/220 (12%)

Query: 150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIH 209
            LQ L    L  T     P        L  L++++ +  +    + +++      L  + 
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 210 LQMSVQKPFVKPSLTNLRTLWGLSI-------GKKSPPLNWLENLSDLKNLGLICN-IAS 261
           +  +    F    +     L  L +        +             L+ L L    + +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 262 L-GKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL----LGRLPGPL 316
             G  + L      L+ L L S N           S +   +L  L L    L ++P   
Sbjct: 216 PSGVCSALAAARVQLQGLDL-SHNSL--RDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-- 270

Query: 317 KLHELPPNLRIFTLSLSY--LSEDPMPVLGQLRELKALRL 354
               LP  L +  L LSY  L     P   +L ++  L L
Sbjct: 271 ---GLPAKLSV--LDLSYNRLDR--NPSPDELPQVGNLSL 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.98
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.72
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.1
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.68
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.43
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	92.15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	88.18

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=6.4e-32  Score=272.37  Aligned_cols=347  Identities=17%  Similarity=0.102  Sum_probs=224.7

Q ss_pred             CCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhh
Q 013456           70 DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETI  148 (442)
Q Consensus        70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l  148 (442)
                      ...++++.+..+.........+.++++|+.|.+.++....++...|          .++++|++|++++|.+..+ |..+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~----------~~l~~L~~L~Ls~n~l~~~~p~~~  100 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW----------HGLHHLSNLILTGNPIQSFSPGSF  100 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT----------TTCTTCCEEECTTCCCCCCCTTSS
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh----------hchhhcCEeECCCCcccccChhhc
Confidence            3567777776666665566667777888888777765544443322          4467777777777776666 5667


Q ss_pred             hcccccceecccccccccCC-ccccccCCCcEEeecCcccc--ccchhhhcccccceeeeccccccccccCCCCCCCCc-
Q 013456          149 GKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT-  224 (442)
Q Consensus       149 ~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-  224 (442)
                      +++++|++|++++|.+..+| ..++++++|++|++++|.++  .+|..++++++|++|++++|.+.+..+.  .++.++ 
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~  178 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--DLQFLRE  178 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT--TTHHHHH
T ss_pred             CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh--hhhhhhc
Confidence            77777777777777777665 55777777777777777776  4677777777777777777765432221  111111 


Q ss_pred             --------------------------ccccccccc---------------------------------------------
Q 013456          225 --------------------------NLRTLWGLS---------------------------------------------  233 (442)
Q Consensus       225 --------------------------~L~~L~~~~---------------------------------------------  233 (442)
                                                +|+.|++.+                                             
T Consensus       179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                                      222222222                                             


Q ss_pred             ----------------------------------------------------------cCCCCCchhhhccccCcceeeE
Q 013456          234 ----------------------------------------------------------IGKKSPPLNWLENLSDLKNLGL  255 (442)
Q Consensus       234 ----------------------------------------------------------~~~~~~~~~~l~~l~~L~~L~l  255 (442)
                                                                                +.. ..++ .+ .+++|+.|++
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l  335 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL  335 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred             hhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence                                                                      111 1111 11 2223333333


Q ss_pred             Ee----------------------eccccc-hhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456          256 IC----------------------NIASLG-KITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       256 ~~----------------------~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  312 (442)
                      ++                      |..... ..+..+..+++|+.|++++|.....+     ..+..+++|+.|+++++.
T Consensus       336 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-----ANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             ESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-----CCCTTCTTCCEEECTTSE
T ss_pred             cCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-----hhccCCCCCCeeECCCCc
Confidence            32                      222100 01333444455555555554443322     245667888888888763


Q ss_pred             C---CC-cccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE
Q 013456          313 P---GP-LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW  388 (442)
Q Consensus       313 ~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  388 (442)
                      .   .+ ..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+......+..+++|+.|++++|......
T Consensus       411 l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  489 (606)
T 3vq2_A          411 LKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS  489 (606)
T ss_dssp             EESTTTTTTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             cCCccChhhhhcc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence            1   12 344444 789999999998887778888889999999999998876544555788899999999987544444


Q ss_pred             EeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456          389 TIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       389 ~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      +...+.+++|+.|++++|..... |..+..+++|++|++++|+++.+|+.
T Consensus       490 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence            55567889999999999988877 88888899999999999999888876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.9e-32  Score=279.03  Aligned_cols=301  Identities=21%  Similarity=0.153  Sum_probs=195.6

Q ss_pred             cCceeEEEecCCCCCC-CChhhhhccc-ccceecccccccc-cCCccccc--cCCCcEEeecCcccc-ccchhhhccccc
Q 013456          127 GYRLLRVLDLEDVYKP-VLPETIGKLQ-LLRYVGLRRTFID-SIPKSLGD--LHSLETLDMKHTNIT-SLPKSIWKVKTL  200 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~L~~~~i~-~lp~~~~~--l~~L~~L~L~~~~l~-~lp~~i~~l~~L  200 (442)
                      ++++|++|++++|.+. .+|..+.+++ +|++|++++|.+. .+|..+..  +++|++|++++|.++ .+|..+.++++|
T Consensus       341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  420 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL  420 (768)
T ss_dssp             TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred             cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence            3455555555544433 4444454444 5555555555443 23444433  556666666666665 566667777777


Q ss_pred             ceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccccccee
Q 013456          201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRL  280 (442)
Q Consensus       201 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  280 (442)
                      ++|++++|.+.+..|.  .++.+++|+.|++..+...+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++
T Consensus       421 ~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISL  497 (768)
T ss_dssp             CEEECCSSEEESCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEEC
T ss_pred             CEEECcCCcccCcccH--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCHHHhcCCCCCEEEc
Confidence            7777777776655443  4667777777777777666666777777777777777777654 456666777777777777


Q ss_pred             eccccccCCccccccccCCcCCCceEEeccccC---CCcccccCCCceeEEEEeccCCCCCCccc---------------
Q 013456          281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRLP---GPLKLHELPPNLRIFTLSLSYLSEDPMPV---------------  342 (442)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------  342 (442)
                      ++|......+.    .+..+++|+.|+++++..   .+..+..+ ++|+.|++++|.+++.+|..               
T Consensus       498 ~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          498 SNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             cCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            77765532221    245566777777776632   24445555 67777777777665433322               


Q ss_pred             -------------------------------------------------------ccCCCCCcEEEeCcccccCcccccC
Q 013456          343 -------------------------------------------------------LGQLRELKALRLFAHSYIGEKMTCG  367 (442)
Q Consensus       343 -------------------------------------------------------l~~l~~L~~L~l~~~~~~~~~~~~~  367 (442)
                                                                             ++.+++|+.|++++|.+.+.++.. 
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-  651 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-  651 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-
Confidence                                                                   333567778888888877766654 


Q ss_pred             CCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccc-ccCC
Q 013456          368 NGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLK-MKPE  436 (442)
Q Consensus       368 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~-~~p~  436 (442)
                      ++.+++|+.|++++|.....+|...+.+++|+.|++++|..... |..+.++++|++|++++|+++ .+|+
T Consensus       652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            77788888888888766667777778888888888888887755 888888888888888888885 3443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=8.3e-32  Score=277.89  Aligned_cols=348  Identities=21%  Similarity=0.162  Sum_probs=215.3

Q ss_pred             CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCC-CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-CChhhh
Q 013456           71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKG-GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-VLPETI  148 (442)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l  148 (442)
                      ...+.+.+..+......+..  .+++|+.|.+.++... .+|.. +.         ..+++|++|++++|.+. .+|..+
T Consensus       247 ~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~-~~---------~~~~~L~~L~Ls~n~l~~~~p~~~  314 (768)
T 3rgz_A          247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF-LS---------GACDTLTGLDLSGNHFYGAVPPFF  314 (768)
T ss_dssp             SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC-SC---------TTCTTCSEEECCSSEEEECCCGGG
T ss_pred             CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH-HH---------hhcCcCCEEECcCCcCCCccchHH
Confidence            34556665544432222221  5666777766655433 33332 11         11356666666665543 455566


Q ss_pred             hcccccceecccccccc-cCCcc-ccccCCCcEEeecCcccc-ccchhhhccc-ccceeeeccccccccccCC-------
Q 013456          149 GKLQLLRYVGLRRTFID-SIPKS-LGDLHSLETLDMKHTNIT-SLPKSIWKVK-TLRHLYLNDIHLQMSVQKP-------  217 (442)
Q Consensus       149 ~~l~~L~~L~L~~~~i~-~lp~~-~~~l~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~-------  217 (442)
                      +++++|++|++++|.+. .+|.. ++++++|++|++++|.++ .+|..+..++ +|++|++++|.+.+..+..       
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  394 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN  394 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred             hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence            66666666666666654 55544 566666666666666665 5565555554 5555555555554433321       


Q ss_pred             -----------------CCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccccccee
Q 013456          218 -----------------FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRL  280 (442)
Q Consensus       218 -----------------~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  280 (442)
                                       ..++++++|+.|++..+...+..+..++.+++|+.|+++.|... +.++..+..+++|+.|++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEEC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCceEEEe
Confidence                             13455555555555555544455555556666666666655443 445555556666666666


Q ss_pred             eccccccCCccccccccCCcCCCceEEecccc---CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcc
Q 013456          281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRL---PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAH  357 (442)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  357 (442)
                      ++|.......    ..+..+++|+.|+++++.   ..+.++..+ ++|+.|++++|.+++..|..++.+++|+.|++++|
T Consensus       474 ~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          474 DFNDLTGEIP----SGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CSSCCCSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             cCCcccCcCC----HHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            6665543221    135567778888887763   234556665 67888888888887777778888888888888888


Q ss_pred             cccCccccc---------------------------------------------------------------------CC
Q 013456          358 SYIGEKMTC---------------------------------------------------------------------GN  368 (442)
Q Consensus       358 ~~~~~~~~~---------------------------------------------------------------------~~  368 (442)
                      .+.+..+..                                                                     .+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            765433321                                                                     12


Q ss_pred             CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccc-ccCC
Q 013456          369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLK-MKPE  436 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~-~~p~  436 (442)
                      ..+++|+.|++++|.....+|...+.+++|+.|++++|..... |..+.++++|+.|+|++|+++ .+|+
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence            3456788888888776667787788899999999999988855 888999999999999999997 4443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=4e-31  Score=266.83  Aligned_cols=342  Identities=14%  Similarity=0.103  Sum_probs=273.8

Q ss_pred             CCceeEEEEecCCCCCC-----------------CCCCcc--ccccceeEEEEeecC-CCCCCchhhhHHHHHHhhhcCc
Q 013456           70 DLCVCRLAEHLDNLSSI-----------------TPSDKK--QFEYLHSYLFFVKRK-GGKPAGEFGNLLKMVIAIRGYR  129 (442)
Q Consensus        70 ~~~~~~l~~~~~~~~~~-----------------~~~~~~--~~~~lr~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  129 (442)
                      -...+.+.+..+.....                 .+..+.  .+++|+.|.+.++.. +.+|.           .+.+++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-----------~l~~l~  273 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-----------FLKALP  273 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-----------TTTTCS
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-----------HHhcCC
Confidence            34677888877766542                 445555  899999999998864 44443           235689


Q ss_pred             eeEEEecCCCC-CC--CChhhhhcc------cccceecccccccccCCc--cccccCCCcEEeecCcccc-ccchhhhcc
Q 013456          130 LLRVLDLEDVY-KP--VLPETIGKL------QLLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNIT-SLPKSIWKV  197 (442)
Q Consensus       130 ~L~~L~l~~~~-~~--~l~~~l~~l------~~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~i~~l  197 (442)
                      +|++|++++|. +.  .+|..++.+      ++|++|++++|.+..+|.  .++++++|++|++++|.++ .+| .+..+
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l  352 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE  352 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence            99999999986 76  488888887      999999999999999998  8999999999999999999 999 89999


Q ss_pred             cccceeeeccccccccccCCCCCCCCcc-cccccccccCCCCCchhhhcccc--CcceeeEEeeccccchhHHhhc----
Q 013456          198 KTLRHLYLNDIHLQMSVQKPFVKPSLTN-LRTLWGLSIGKKSPPLNWLENLS--DLKNLGLICNIASLGKITNLIQ----  270 (442)
Q Consensus       198 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~l~----  270 (442)
                      ++|++|++++|.+. .+|.  .++.+++ |+.|++.++... .++..+..++  +|+.|++++|.+. +..|..+.    
T Consensus       353 ~~L~~L~L~~N~l~-~lp~--~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~  427 (636)
T 4eco_A          353 IKLASLNLAYNQIT-EIPA--NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDP  427 (636)
T ss_dssp             EEESEEECCSSEEE-ECCT--TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCS
T ss_pred             CCCCEEECCCCccc-cccH--hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC-Ccchhhhccccc
Confidence            99999999999987 4544  5889999 999999988876 5666666654  8999999999776 55666666    


Q ss_pred             ---CCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC--CcccccCC-------CceeEEEEeccCCCCC
Q 013456          271 ---GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELP-------PNLRIFTLSLSYLSED  338 (442)
Q Consensus       271 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~-------~~L~~L~l~~~~~~~~  338 (442)
                         .+.+|+.|++++|.+...+...    +..+++|+.|+++++...  +.......       ++|+.|++++|.++ .
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCTHH----HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred             ccccCCCCCEEECcCCccCcCCHHH----HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence               6789999999999887655432    445789999999987432  11111111       18999999999998 6


Q ss_pred             Cccccc--CCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc------cCCcceEEeCCCccccccEEEeccCCCCC
Q 013456          339 PMPVLG--QLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV------LKELKEWTIEEGAMTALEKLEIRNCPKLK  410 (442)
Q Consensus       339 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  410 (442)
                      ++..+.  .+++|+.|++++|.+.+ .+. .+..+++|+.|++++      |.....++...+.+++|+.|++++|.+..
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  580 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK  580 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc
Confidence            677776  89999999999999986 433 367899999999954      44455677777889999999999999977


Q ss_pred             CCccCCCCCCCcEEEeccccccccCCC
Q 013456          411 MPTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       411 ~p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      +|..+.  ++|++|++++|++..++..
T Consensus       581 ip~~~~--~~L~~L~Ls~N~l~~~~~~  605 (636)
T 4eco_A          581 VNEKIT--PNISVLDIKDNPNISIDLS  605 (636)
T ss_dssp             CCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred             cCHhHh--CcCCEEECcCCCCccccHH
Confidence            787765  8999999999999887654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=8.4e-31  Score=259.29  Aligned_cols=139  Identities=17%  Similarity=0.146  Sum_probs=88.6

Q ss_pred             CCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCC--CCcccccCCCCCcEEEeCcccccCcccccCCCCCC
Q 013456          298 NNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSE--DPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP  372 (442)
Q Consensus       298 ~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (442)
                      ..+++|++|+++++...   +.++..+ ++|+.|++++|.+++  ..+..++.+++|+.|++++|.+.+..+...+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            34556666666655321   2334444 566666666666654  23345666667777777766665544443455667


Q ss_pred             cccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCC
Q 013456          373 QLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAW  439 (442)
Q Consensus       373 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~  439 (442)
                      +|++|++++|......+...  .++|+.|++++|.+..+|..+..+++|++|++++|+++.+|...+
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~  464 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF  464 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCEEECcCCCCCcchhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence            77777777664333222111  168888888888887778878888999999999999988887643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=260.72  Aligned_cols=139  Identities=13%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             cCCcCCCceEEeccccC----CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCC
Q 013456          297 LNNHKELKELYLLGRLP----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP  372 (442)
Q Consensus       297 ~~~~~~L~~l~l~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (442)
                      +..+++|+.|++.++..    ....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+...+..+..++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence            34455666666655421    11223333 66777777777766666666777777777777777665322333466777


Q ss_pred             cccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCC
Q 013456          373 QLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       373 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                      +|+.|++++|......+...+.+++|+.|++++|..... |..+..+++|++|++++|++++-.+
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            777777777643333344556677777777777766666 4456777777777777777765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=4e-30  Score=259.30  Aligned_cols=114  Identities=20%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             CceeEEEEeccCCCCCCcc-cccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcce-EE--eCCCccccc
Q 013456          323 PNLRIFTLSLSYLSEDPMP-VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE-WT--IEEGAMTAL  398 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~--~~~~~~~~L  398 (442)
                      ++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..+. .+..+++|++|++++|..... ++  .....+++|
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            3444444444444333222 244555555555555554432222 245566666666666543221 11  223456677


Q ss_pred             cEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456          399 EKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       399 ~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      +.|++++|..... |..+..+++|++|++++|+++.+++.
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            7777777766665 66677777777777777777665544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=5.9e-30  Score=239.92  Aligned_cols=307  Identities=19%  Similarity=0.171  Sum_probs=243.3

Q ss_pred             ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc
Q 013456           91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS  170 (442)
Q Consensus        91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~  170 (442)
                      ...+++++.+.+.++.....+.            +..+++|++|++++|.+..++. +..+++|++|++++|.+..+| .
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~------------~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~  105 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG------------IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-A  105 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G
T ss_pred             chhcccccEEEEeCCccccchh------------hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-H
Confidence            3467888888888776554432            3558999999999999888877 889999999999999988876 5


Q ss_pred             ccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456          171 LGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL  250 (442)
Q Consensus       171 ~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L  250 (442)
                      ++++++|++|++++|.+..++. +..+++|++|++++|......+   .+..+++|+.|++.++......+  +..+++|
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L  179 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP--IANLTDL  179 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh--hccCCCC
Confidence            8899999999999999998877 8899999999999996654443   37889999999988887655443  8889999


Q ss_pred             ceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC-CcccccCCCceeEEE
Q 013456          251 KNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG-PLKLHELPPNLRIFT  329 (442)
Q Consensus       251 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~  329 (442)
                      +.|++++|...  .++. +..+++|+.+++++|.....+.      +..+++|+.|+++++... ...+..+ ++|+.|+
T Consensus       180 ~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~  249 (347)
T 4fmz_A          180 YSLSLNYNQIE--DISP-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSPLANL-SQLTWLE  249 (347)
T ss_dssp             SEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEE
T ss_pred             CEEEccCCccc--cccc-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcchhcC-CCCCEEE
Confidence            99999988653  3333 7788999999999987654432      557889999999887432 2224444 8999999


Q ss_pred             EeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCC
Q 013456          330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKL  409 (442)
Q Consensus       330 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l  409 (442)
                      +++|.+++.  +.+..+++|+.|++++|.+.+.   ..+..+++|+.|++++|......+...+.+++|+.|++++|+..
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            999988753  5788999999999999988764   22678999999999998655444455567899999999999988


Q ss_pred             CCCccCCCCCCCcEEEeccccccc
Q 013456          410 KMPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       410 ~~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      ..+. +..+++|++|++++|+|++
T Consensus       325 ~~~~-~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          325 DIRP-LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             CCGG-GGGCTTCSEESSSCC----
T ss_pred             cccC-hhhhhccceeehhhhcccC
Confidence            7744 8899999999999999863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3e-30  Score=251.09  Aligned_cols=330  Identities=14%  Similarity=0.019  Sum_probs=226.7

Q ss_pred             cccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-CC-hhhhhcccccceecccccccccC-Ccc
Q 013456           94 FEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-VL-PETIGKLQLLRYVGLRRTFIDSI-PKS  170 (442)
Q Consensus        94 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~L~~~~i~~l-p~~  170 (442)
                      .++++.|.+.++.....+..          .+.++++|++|++++|.+. .+ +..+.++++|++|++++|.+..+ |..
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~----------~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNET----------SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTT----------TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred             CCccCEEEecCCccCcCChh----------HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence            37899999988866555443          2356899999999988764 44 45788999999999999998876 778


Q ss_pred             ccccCCCcEEeecCccccc-cchh--hhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccc
Q 013456          171 LGDLHSLETLDMKHTNITS-LPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL  247 (442)
Q Consensus       171 ~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l  247 (442)
                      ++++++|++|++++|.++. .|..  +.++++|++|++++|.+.+..|.. .++.+++|++|++.++......+..+..+
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  177 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVKSICEEDLLNF  177 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc-ccCCCCcccEEeCCCCcccccChhhhhcc
Confidence            8999999999999999884 4544  888999999999999887554432 37889999999999888777767767666


Q ss_pred             --cCcceeeEEeeccccch-------hHHhhcCCcccccceeeccccccCCccccc------------------------
Q 013456          248 --SDLKNLGLICNIASLGK-------ITNLIQGLTSLESLRLRSINDFYVPSDLAI------------------------  294 (442)
Q Consensus       248 --~~L~~L~l~~~~~~~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------------  294 (442)
                        .+|+.|+++.|......       ....+..+++|+.|++++|...........                        
T Consensus       178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  257 (455)
T 3v47_A          178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG  257 (455)
T ss_dssp             TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred             ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence              67888888877543110       111233567899999998865431110000                        


Q ss_pred             ---------cccC--CcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456          295 ---------GSLN--NHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI  360 (442)
Q Consensus       295 ---------~~~~--~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  360 (442)
                               ..+.  ..++|+.++++++...   +..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             hhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence                     0000  1246667777665321   2334444 67777777777777666667777777777777777765


Q ss_pred             CcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCC-ccCCCCCCCcEEEeccccccccCC
Q 013456          361 GEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMP-TELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       361 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p-~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                      +..+ ..+..+++|++|++++|......+.....+++|+.|++++|.+...| ..+..+++|++|++++|+++.-.+
T Consensus       337 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          337 SIDS-RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECG-GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CcCh-hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            4332 23667777777777776433223445566777777777777776663 345677777777777777765443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=8.6e-31  Score=264.41  Aligned_cols=335  Identities=15%  Similarity=0.104  Sum_probs=263.8

Q ss_pred             CCCccccccceeEEEEeecCCC------------------CCCchhhhHHHHHHhhhcCceeEEEecCCCC-CCCChhhh
Q 013456           88 PSDKKQFEYLHSYLFFVKRKGG------------------KPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETI  148 (442)
Q Consensus        88 ~~~~~~~~~lr~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~l  148 (442)
                      +..+.++++|+.|.+.++....                  +|.. +        .+.++++|++|++++|. .+.+|..+
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l--------~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-L--------KWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-C--------CGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-h--------hhcccCCCCEEEecCCcCCccChHHH
Confidence            3456788999999999887655                  4432 1        11268999999999885 67789999


Q ss_pred             hcccccceecccccc-cc--cCCcccccc------CCCcEEeecCccccccch--hhhcccccceeeeccccccccccCC
Q 013456          149 GKLQLLRYVGLRRTF-ID--SIPKSLGDL------HSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKP  217 (442)
Q Consensus       149 ~~l~~L~~L~L~~~~-i~--~lp~~~~~l------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~  217 (442)
                      +++++|++|++++|. +.  .+|..++++      ++|++|++++|.++.+|.  .++++++|++|++++|.+.+.+|  
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence            999999999999998 87  489888887      999999999999999999  89999999999999999987777  


Q ss_pred             CCCCCCcccccccccccCCCCCchhhhccccC-cceeeEEeeccccchhHHhhcCCc--ccccceeeccccccCCcc-cc
Q 013456          218 FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD-LKNLGLICNIASLGKITNLIQGLT--SLESLRLRSINDFYVPSD-LA  293 (442)
Q Consensus       218 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~-~~  293 (442)
                       .++.+++|+.|++.++... .++..+..+++ |+.|++++|.+.  .+|..+..++  +|+.|++++|.+....+. +.
T Consensus       348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence             4899999999999888766 66777999999 999999999764  6777666654  899999999887653222 11


Q ss_pred             --ccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccCC-------CCCcEEEeCcccccCc
Q 013456          294 --IGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL-------RELKALRLFAHSYIGE  362 (442)
Q Consensus       294 --~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-------~~L~~L~l~~~~~~~~  362 (442)
                        ......+.+|+.|+++++...  +..+....++|+.|++++|.++......+...       ++|+.|++++|.+.. 
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-  502 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-  502 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-
T ss_pred             ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-
Confidence              001115678999999987432  22233323899999999999984333333333       399999999999883 


Q ss_pred             ccccCC-CCCCcccEEEecccCCcceEEeCCCccccccEEEecc------CCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456          363 KMTCGN-GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN------CPKLKM-PTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       363 ~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                      .+.... ..+++|+.|++++|. +..++.....+++|+.|++++      |...+. |..+.++++|++|+|++|+++.+
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i  581 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV  581 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             cChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc
Confidence            443312 489999999999975 445887788899999999965      444544 99999999999999999999999


Q ss_pred             CCCCC
Q 013456          435 PEDAW  439 (442)
Q Consensus       435 p~~~~  439 (442)
                      |...+
T Consensus       582 p~~~~  586 (636)
T 4eco_A          582 NEKIT  586 (636)
T ss_dssp             CSCCC
T ss_pred             CHhHh
Confidence            98754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=5.4e-30  Score=250.66  Aligned_cols=298  Identities=17%  Similarity=0.128  Sum_probs=221.3

Q ss_pred             ceeEEEecCCCCCCCCh-hhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l  205 (442)
                      +.+++|++++|.+..++ ..|.++++|++|+|++|.+..+ |..++++++|++|+|++|.++.+|.. +.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            45777888877776663 4677778888888888777766 66677788888888888877777654 567788888888


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+....+.  .+..+++|+.|++.++......+..+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|..
T Consensus       112 s~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          112 SENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             TTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCC
T ss_pred             CCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcC
Confidence            88777654443  4677778888877777665555666777888888888877654 33445677788888888888776


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE  362 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  362 (442)
                      ...+.    ..+..+++|+.|+++++...   +...... .+|+.|++++|.++......+..+++|+.|++++|.+.+.
T Consensus       189 ~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          189 NAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             CEECT----TCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             cEeCh----hhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence            55433    23566788888888775321   1222222 4899999999999866656789999999999999998754


Q ss_pred             ccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccC
Q 013456          363 KMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKP  435 (442)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p  435 (442)
                      . ...+..+++|+.|++++|......+.....+++|+.|++++|.+..+ +..+..+++|++|++++|++.+-.
T Consensus       264 ~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          264 E-GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             C-TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             C-hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            3 33478899999999999754433455667899999999999998888 556788999999999999987543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.2e-30  Score=259.98  Aligned_cols=275  Identities=17%  Similarity=0.199  Sum_probs=168.3

Q ss_pred             cceecccccccccCCc-cccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456          154 LRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL  232 (442)
Q Consensus       154 L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~  232 (442)
                      |++|++++|.+..++. .++.+++|++|++++|.++.+|..+..+++|++|++++|.+....+.  .++.+++|+.|++.
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG--CGGGCTTCSEEECC
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh--hhhccCcCCEEECC
Confidence            4444444444444433 25666677777777777777777677777777777777766544332  36666777777766


Q ss_pred             ccCCCCCch-hhhccccCcceeeEEeeccccchh--HHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456          233 SIGKKSPPL-NWLENLSDLKNLGLICNIASLGKI--TNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL  309 (442)
Q Consensus       233 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  309 (442)
                      ++......+ ..++.+++|+.|++++|... ...  +..+..+++|+.|++++|.....+.    ..+..+++|+.|+++
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLA  408 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECT----TTTTTCTTCSEEECT
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCH----HHhcCCccCCeEECC
Confidence            665543332 23666777777777766543 221  4456666777777777765544322    235556777777776


Q ss_pred             cccC----CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc--cCCCCCCcccEEEecccC
Q 013456          310 GRLP----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT--CGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       310 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~  383 (442)
                      ++..    .+..+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+....  ..+..+++|+.|++++|.
T Consensus       409 ~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TCCEECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCcCCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            6531    11223344 6777777777777666666677777777777777776542221  225567777777777764


Q ss_pred             CcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456          384 ELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       384 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      .....+...+.+++|+.|++++|..... |..+.++++| .|++++|+++.+|+.
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~  541 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS  541 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence            3333344556677777777777766665 6667777777 777777777666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.2e-29  Score=246.85  Aligned_cols=323  Identities=18%  Similarity=0.153  Sum_probs=242.0

Q ss_pred             CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCC-CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hh
Q 013456           69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKG-GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PE  146 (442)
Q Consensus        69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~  146 (442)
                      ....++++.+..+......+..+..+++|+.|.+.++... .++..          .|.++++|++|++++|.+..+ |.
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~   97 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN----------TFRGLSSLIILKLDYNQFLQLETG   97 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT----------TTTTCTTCCEEECTTCTTCEECTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc----------cccccccCCEEeCCCCccCccChh
Confidence            4467889998888777666778889999999999988653 33333          235689999999999988766 67


Q ss_pred             hhhcccccceeccccccccc-CCcc--ccccCCCcEEeecCcccccc-chh-hhcccccceeeeccccccccccCCCCCC
Q 013456          147 TIGKLQLLRYVGLRRTFIDS-IPKS--LGDLHSLETLDMKHTNITSL-PKS-IWKVKTLRHLYLNDIHLQMSVQKPFVKP  221 (442)
Q Consensus       147 ~l~~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~  221 (442)
                      .++++++|++|++++|.+.. +|..  ++++++|++|++++|.++.+ |.. +.++++|++|++++|.+.+..+.  .+.
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~  175 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE--DLL  175 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT--TSG
T ss_pred             hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh--hhh
Confidence            89999999999999999875 3444  88999999999999999966 555 78999999999999998765543  354


Q ss_pred             CC--cccccccccccCCCCCchhh--------hccccCcceeeEEeeccccchhHHhhcC--------------------
Q 013456          222 SL--TNLRTLWGLSIGKKSPPLNW--------LENLSDLKNLGLICNIASLGKITNLIQG--------------------  271 (442)
Q Consensus       222 ~l--~~L~~L~~~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~l~~--------------------  271 (442)
                      .+  .+|+.|++..+......+..        +..+++|+.|++++|.+. ...+..+..                    
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  254 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGS  254 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-HHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred             ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc-ccchhhhhccccccceeeEeecccccccc
Confidence            44  56666666665544322211        224466777777776554 333332221                    


Q ss_pred             -------------------CcccccceeeccccccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEE
Q 013456          272 -------------------LTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFT  329 (442)
Q Consensus       272 -------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~  329 (442)
                                         .++|+.|++++|.......    ..+..+++|+.|+++++...   +..+..+ ++|+.|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~  329 (455)
T 3v47_A          255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK----SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLN  329 (455)
T ss_dssp             CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEE
T ss_pred             ccchhhhccCcccccccccccCceEEEecCccccccch----hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEE
Confidence                               2467777777776654332    23677899999999987432   3345555 8999999


Q ss_pred             EeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCccccccEEEeccCCC
Q 013456          330 LSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEKLEIRNCPK  408 (442)
Q Consensus       330 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~  408 (442)
                      +++|.+++..+..++.+++|+.|++++|.+.+..+ ..+..+++|++|++++|. ++.++. ....+++|+.|++++|+.
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence            99999987778889999999999999999875444 348889999999999974 555554 347899999999999988


Q ss_pred             CCC
Q 013456          409 LKM  411 (442)
Q Consensus       409 l~~  411 (442)
                      ...
T Consensus       408 ~~~  410 (455)
T 3v47_A          408 DCS  410 (455)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=3.6e-30  Score=264.61  Aligned_cols=330  Identities=14%  Similarity=0.077  Sum_probs=219.2

Q ss_pred             CCccccccceeEEEEeecCCC------------------CCCchhhhHHHHHHhhhcCceeEEEecCCCC-CCCChhhhh
Q 013456           89 SDKKQFEYLHSYLFFVKRKGG------------------KPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY-KPVLPETIG  149 (442)
Q Consensus        89 ~~~~~~~~lr~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~l~  149 (442)
                      ..+..+++|+.|.+.++....                  +|..         +.|.++++|++|++++|. .+.+|..++
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~---------l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE---------LSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC---------CCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh---------hhhccCCCCCEEECcCCCCCccChHHHh
Confidence            456678888888888876554                  3332         112368888999998774 677888888


Q ss_pred             cccccceecccccc-ccc--CCccccccC-------CCcEEeecCccccccch--hhhcccccceeeeccccccccccCC
Q 013456          150 KLQLLRYVGLRRTF-IDS--IPKSLGDLH-------SLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKP  217 (442)
Q Consensus       150 ~l~~L~~L~L~~~~-i~~--lp~~~~~l~-------~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~  217 (442)
                      ++++|++|++++|. +..  +|..++++.       +|++|++++|.++.+|.  .++++++|++|++++|.+. .+|  
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence            88889999998887 763  787776665       88999998888888888  8888888999999888877 555  


Q ss_pred             CCCCCCcccccccccccCCCCCchhhhccccC-cceeeEEeeccccchhHHhhcCCc--ccccceeeccccccCCcccc-
Q 013456          218 FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD-LKNLGLICNIASLGKITNLIQGLT--SLESLRLRSINDFYVPSDLA-  293 (442)
Q Consensus       218 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~-  293 (442)
                       .++.+++|+.|++..+... .++..+..+++ |+.|++++|.+.  .+|..+..++  +|+.|++++|.+....+.+. 
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence             4788888888888888776 67777888888 888888888653  5666665554  38888888877654322211 


Q ss_pred             ccccCCcCCCceEEeccccCC--CcccccCCCceeEEEEeccCCCCCCcccccC--------CCCCcEEEeCcccccCcc
Q 013456          294 IGSLNNHKELKELYLLGRLPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQ--------LRELKALRLFAHSYIGEK  363 (442)
Q Consensus       294 ~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~  363 (442)
                      .......++|+.|+++++...  +..+...+++|+.|++++|.++ .++..+..        +++|+.|+|++|.+.. .
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-l  743 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-L  743 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-C
T ss_pred             hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-c
Confidence            001112346777777665322  2222212256777777777666 33332222        2367777777776652 2


Q ss_pred             cccCC--CCCCcccEEEecccCCcceEEeCCCccccccEEEecc------CCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456          364 MTCGN--GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRN------CPKLKM-PTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       364 ~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                      +.. +  ..+++|+.|++++|. +..++.....+++|+.|++++      |..... |..+.++++|++|+|++|++..+
T Consensus       744 p~~-l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          744 SDD-FRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             CGG-GSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             hHH-hhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence            222 3  366777777777653 334555556667777777765      333333 66666777777777777777767


Q ss_pred             CCCC
Q 013456          435 PEDA  438 (442)
Q Consensus       435 p~~~  438 (442)
                      |...
T Consensus       822 p~~l  825 (876)
T 4ecn_A          822 DEKL  825 (876)
T ss_dssp             CSCC
T ss_pred             CHhh
Confidence            6653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=6.5e-30  Score=243.46  Aligned_cols=308  Identities=18%  Similarity=0.160  Sum_probs=252.2

Q ss_pred             cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-c
Q 013456           92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-K  169 (442)
Q Consensus        92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~  169 (442)
                      ..+++++.+.+.++....+|...+          ..+++|++|+++++.+..++. .+..+++|++|++++|.+..+| .
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~----------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  111 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALL----------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  111 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHH----------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cccCCceEEEecCCchhhCChhHh----------cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence            457899999999887777765433          458999999999998888765 8899999999999999998885 5


Q ss_pred             cccccCCCcEEeecCccccccchhh-hcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhcccc
Q 013456          170 SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS  248 (442)
Q Consensus       170 ~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~  248 (442)
                      .++++++|++|++++|.++.+|..+ .++++|++|++++|.+....+.  .++.+++|+.|++.++.....   .++.++
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~---~~~~l~  186 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV---DLSLIP  186 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC---CGGGCT
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh--hccCCCCCCEEECCCCcCCcc---cccccc
Confidence            5899999999999999999998875 7899999999999998754443  588999999999988876543   367789


Q ss_pred             CcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccC-CCcccccCCCceeE
Q 013456          249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLP-GPLKLHELPPNLRI  327 (442)
Q Consensus       249 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~L~~  327 (442)
                      +|+.|+++.|...  .    +....+|+.|++++|.....+..       ..++|+.|+++++.. ...++..+ ++|+.
T Consensus       187 ~L~~L~l~~n~l~--~----~~~~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~  252 (390)
T 3o6n_A          187 SLFHANVSYNLLS--T----LAIPIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDTAWLLNY-PGLVE  252 (390)
T ss_dssp             TCSEEECCSSCCS--E----EECCSSCSEEECCSSCCCEEECC-------CCSSCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred             ccceeeccccccc--c----cCCCCcceEEECCCCeeeecccc-------ccccccEEECCCCCCcccHHHcCC-CCccE
Confidence            9999999988553  1    23456899999999887665432       247899999988743 34455555 89999


Q ss_pred             EEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCC
Q 013456          328 FTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP  407 (442)
Q Consensus       328 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  407 (442)
                      |++++|.+++..+..+..+++|+.|++++|.+.+.  ......+++|++|++++| .+..++...+.+++|+.|++++|.
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence            99999999877788899999999999999988653  233578999999999997 455666666778999999999999


Q ss_pred             CCCCCccCCCCCCCcEEEeccccccc
Q 013456          408 KLKMPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       408 ~l~~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      +...+  +..+++|++|++++|++..
T Consensus       330 i~~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          330 IVTLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             cceeC--chhhccCCEEEcCCCCccc
Confidence            87765  6788999999999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=5.5e-30  Score=263.20  Aligned_cols=343  Identities=13%  Similarity=0.070  Sum_probs=270.5

Q ss_pred             CCceeEEEEecCCCCCC-----------------CCCCcc--ccccceeEEEEeec-CCCCCCchhhhHHHHHHhhhcCc
Q 013456           70 DLCVCRLAEHLDNLSSI-----------------TPSDKK--QFEYLHSYLFFVKR-KGGKPAGEFGNLLKMVIAIRGYR  129 (442)
Q Consensus        70 ~~~~~~l~~~~~~~~~~-----------------~~~~~~--~~~~lr~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  129 (442)
                      -...+.+.+..+.....                 .+..+.  .+++|+.|.+.++. .+.+| .          .+.+++
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~----------~l~~L~  515 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-D----------FLYDLP  515 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-G----------GGGGCS
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-H----------HHhCCC
Confidence            34678888877776551                 334434  89999999999885 44444 2          235689


Q ss_pred             eeEEEecCCCC-CC--CChhhhhccc-------ccceecccccccccCCc--cccccCCCcEEeecCccccccchhhhcc
Q 013456          130 LLRVLDLEDVY-KP--VLPETIGKLQ-------LLRYVGLRRTFIDSIPK--SLGDLHSLETLDMKHTNITSLPKSIWKV  197 (442)
Q Consensus       130 ~L~~L~l~~~~-~~--~l~~~l~~l~-------~L~~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~i~~l  197 (442)
                      +|++|++++|. +.  .+|..+++++       +|++|++++|.+..+|.  .++++++|++|++++|.++.+| .++.+
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L  594 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN  594 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence            99999999986 76  4888888877       99999999999999999  8999999999999999999999 89999


Q ss_pred             cccceeeeccccccccccCCCCCCCCcc-cccccccccCCCCCchhhhccccC--cceeeEEeeccccchhH---Hhhc-
Q 013456          198 KTLRHLYLNDIHLQMSVQKPFVKPSLTN-LRTLWGLSIGKKSPPLNWLENLSD--LKNLGLICNIASLGKIT---NLIQ-  270 (442)
Q Consensus       198 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~---~~l~-  270 (442)
                      ++|+.|++++|.+. .+|.  .+..+++ |+.|++.++... .++..+..++.  |+.|++++|.+. +.++   ..+. 
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~-g~ip~l~~~l~~  669 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDD  669 (876)
T ss_dssp             SEESEEECCSSCCS-CCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT-TTSSSCSSCTTT
T ss_pred             CcceEEECcCCccc-cchH--HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC-Cccccchhhhcc
Confidence            99999999999987 5554  5889999 999999998876 56666666654  999999999765 3222   2222 


Q ss_pred             -CCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC--CcccccCC-------CceeEEEEeccCCCCCCc
Q 013456          271 -GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG--PLKLHELP-------PNLRIFTLSLSYLSEDPM  340 (442)
Q Consensus       271 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~-------~~L~~L~l~~~~~~~~~~  340 (442)
                       .+.+|+.|++++|.+...+...    +..+++|+.|+++++...  +.......       ++|+.|++++|.++ .++
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~----~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp  744 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS  744 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHH----HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred             ccCCCcCEEEccCCcCCccCHHH----HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence             3458999999999887655432    346789999999987422  22222221       28999999999998 667


Q ss_pred             cccc--CCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc------cCCcceEEeCCCccccccEEEeccCCCCCCC
Q 013456          341 PVLG--QLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV------LKELKEWTIEEGAMTALEKLEIRNCPKLKMP  412 (442)
Q Consensus       341 ~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p  412 (442)
                      ..+.  .+++|+.|+|++|.+.+ .+ ..+..+++|+.|++++      |.....++...+.+++|+.|++++|.+..+|
T Consensus       745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp-~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip  822 (876)
T 4ecn_A          745 DDFRATTLPYLSNMDVSYNCFSS-FP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD  822 (876)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSS-CC-CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             HHhhhccCCCcCEEEeCCCCCCc-cc-hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccC
Confidence            7776  89999999999999986 33 3367899999999987      4445567777788999999999999996678


Q ss_pred             ccCCCCCCCcEEEeccccccccCCCC
Q 013456          413 TELTKLSNLKELTLVKKVLKMKPEDA  438 (442)
Q Consensus       413 ~~l~~l~~L~~L~l~~n~l~~~p~~~  438 (442)
                      ..+.  ++|+.|+|++|++..++...
T Consensus       823 ~~l~--~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          823 EKLT--PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             SCCC--SSSCEEECCSCTTCEEECGG
T ss_pred             Hhhc--CCCCEEECCCCCCCccChHH
Confidence            8765  69999999999998876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.1e-29  Score=259.56  Aligned_cols=132  Identities=18%  Similarity=0.188  Sum_probs=91.5

Q ss_pred             CCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hh
Q 013456           70 DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TI  148 (442)
Q Consensus        70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l  148 (442)
                      ...++++.+..+.........+..+++|+.|.+.++.....+...+          .++++|++|++++|.+..+|. .+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------~~l~~L~~L~L~~n~l~~l~~~~~   93 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC----------QKLPMLKVLNLQHNELSQLSDKTF   93 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH----------HHCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH----------hcccCcCEEECCCCccCccChhhh
Confidence            3567777777776665566667778888888887776555544433          346778888888777777766 47


Q ss_pred             hcccccceecccccccccCC-ccccccCCCcEEeecCccccc-cchhhhcccccceeeecccccc
Q 013456          149 GKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       149 ~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~  211 (442)
                      +++++|++|++++|.+..+| ..++++++|++|++++|.++. .|..+.++++|++|++++|.+.
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            77778888888877777665 457777777777777777763 3445666677777777666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.8e-29  Score=250.53  Aligned_cols=341  Identities=16%  Similarity=0.102  Sum_probs=205.4

Q ss_pred             eEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhccc
Q 013456           74 CRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQ  152 (442)
Q Consensus        74 ~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~  152 (442)
                      +++.+.......++...   .++++.|.+.++.....+...          |.++++|++|++++|.+..+ |..+.+++
T Consensus        34 ~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  100 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPD----------ISFLSELRVLRLSHNRIRSLDFHVFLFNQ  100 (562)
T ss_dssp             CEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGG----------TTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             cEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhh----------hccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence            45555444444333322   278888888887766665443          35578888888888887776 55788888


Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCcccccc--chhhhcccccceeeeccccccccccCCCCCCCCccc--cc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL--PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL--RT  228 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L--~~  228 (442)
                      +|++|++++|.+..+|..  .+++|++|++++|.++.+  |..++++++|++|++++|.+...     .+..+++|  +.
T Consensus       101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~  173 (562)
T 3a79_B          101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSC  173 (562)
T ss_dssp             TCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEE
T ss_pred             CCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeE
Confidence            888888888888888876  788888888888888864  46788888888888888877531     24555555  77


Q ss_pred             ccccccCC--CCCchhhhc--------------------------cccCcceeeEEee----------------------
Q 013456          229 LWGLSIGK--KSPPLNWLE--------------------------NLSDLKNLGLICN----------------------  258 (442)
Q Consensus       229 L~~~~~~~--~~~~~~~l~--------------------------~l~~L~~L~l~~~----------------------  258 (442)
                      |++..+..  ....+..+.                          .+++|+.++++.|                      
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            77766654  222222222                          2333444444433                      


Q ss_pred             ------ccccc---hhHHhhcCCcccccceeeccccc-cCCcccc--------------------------c--------
Q 013456          259 ------IASLG---KITNLIQGLTSLESLRLRSINDF-YVPSDLA--------------------------I--------  294 (442)
Q Consensus       259 ------~~~~~---~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~--------------------------~--------  294 (442)
                            .....   ..+..+ ..++|+.|++++|... ..|....                          +        
T Consensus       254 L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~  332 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN  332 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred             EEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence                  11100   111111 1236666666666544 2222110                          0        


Q ss_pred             --------------cccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCC--CcccccCCCCCcEEEeC
Q 013456          295 --------------GSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSED--PMPVLGQLRELKALRLF  355 (442)
Q Consensus       295 --------------~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~  355 (442)
                                    .....+++|++|+++++...   +..+..+ ++|+.|++++|.+++.  .+..++.+++|+.|+++
T Consensus       333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence                          00034455566666554211   2233333 5666666666655532  12345566666666666


Q ss_pred             cccccCcccccCCCCCCcccEEEecccCCcceEEeCCCcc-ccccEEEeccCCCCCCCccCCCCCCCcEEEecccccccc
Q 013456          356 AHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAM-TALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                      +|.+.+..+...+..+++|++|++++|......+   ..+ ++|+.|++++|.+..+|.++..+++|++|++++|+++.+
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCC
Confidence            6665543443335556666666666654322222   223 688888888888777788778889999999999999888


Q ss_pred             CCCCC
Q 013456          435 PEDAW  439 (442)
Q Consensus       435 p~~~~  439 (442)
                      |+..+
T Consensus       489 ~~~~~  493 (562)
T 3a79_B          489 PDGVF  493 (562)
T ss_dssp             CTTST
T ss_pred             CHHHH
Confidence            88633

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=6.5e-30  Score=257.70  Aligned_cols=133  Identities=21%  Similarity=0.124  Sum_probs=112.9

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhcccccceecccccccccC-Ccccc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSI-PKSLG  172 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~l-p~~~~  172 (442)
                      ++++.|.+.++.....+...          |.++++|++|++++|.+..+ |..|+++++|++|++++|.+..+ |..++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYS----------FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             CCcCEEECCCCCcCEeChhh----------ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence            78999999988766665543          35689999999999988887 55799999999999999999888 88899


Q ss_pred             ccCCCcEEeecCccccccc-hhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCC
Q 013456          173 DLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS  238 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~  238 (442)
                      ++++|++|++++|.++.++ ..++++++|++|++++|.+.+. ..|..++++++|++|++.++....
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCccee
Confidence            9999999999999999776 6799999999999999988642 223368999999999998876654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=5.2e-29  Score=259.62  Aligned_cols=134  Identities=22%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeec-CCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hh
Q 013456           69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKR-KGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PE  146 (442)
Q Consensus        69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~  146 (442)
                      ....++++.+..+.........+..+++|+.|.+.++. ...++..          .|.++++|++|+|++|.+..+ |.
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----------~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE----------AFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT----------TTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH----------HhcCCCCCCEEECCCCcCcccCHh
Confidence            45678888888777766667778888888888888773 2333232          235578888888888877665 66


Q ss_pred             hhhcccccceeccccccccc-CCcc--ccccCCCcEEeecCcccccc--chhhhcccccceeeeccccccc
Q 013456          147 TIGKLQLLRYVGLRRTFIDS-IPKS--LGDLHSLETLDMKHTNITSL--PKSIWKVKTLRHLYLNDIHLQM  212 (442)
Q Consensus       147 ~l~~l~~L~~L~L~~~~i~~-lp~~--~~~l~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~  212 (442)
                      .++++++|++|++++|.+.. +|..  ++++++|++|++++|.++.+  +..++++++|++|++++|.+.+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            78888888888888887764 4544  77888888888888887744  3567788888888888876643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=2e-28  Score=238.60  Aligned_cols=326  Identities=19%  Similarity=0.190  Sum_probs=212.6

Q ss_pred             CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhc
Q 013456           71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGK  150 (442)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~  150 (442)
                      ..++++.+........  ..+..+++|+.|.+.++.....+.            +..+++|++|++++|.+..++. +++
T Consensus        46 ~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~l~~L~~L~l~~n~l~~~~~-~~~  110 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP------------LKNLTKLVDILMNNNQIADITP-LAN  110 (466)
T ss_dssp             HTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG------------GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred             ccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCchh------------hhccccCCEEECCCCccccChh-hcC
Confidence            3566777655544332  235678888888888776544432            3567888888888888877776 888


Q ss_pred             ccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee---------------------cccc
Q 013456          151 LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL---------------------NDIH  209 (442)
Q Consensus       151 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l---------------------~~~~  209 (442)
                      +++|++|++++|.+..+|. ++++++|++|++++|.+..++. +..+++|++|++                     ++|.
T Consensus       111 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  188 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence            8888888888888887765 7888888888888887776653 455555555544                     4444


Q ss_pred             ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCC
Q 013456          210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVP  289 (442)
Q Consensus       210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  289 (442)
                      +... +   .+..+++|+.|++.++......+  ++.+++|+.|++++|...  .+ ..+..+++|+.|++++|.....+
T Consensus       189 l~~~-~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          189 VSDI-S---VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--DI-GTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             CCCC-G---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CCCC-h---hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc--cc-hhhhcCCCCCEEECCCCccccch
Confidence            3321 1   13444555555554444333222  445555555555555432  11 23455566666666665544322


Q ss_pred             ccccccccCCcCCCceEEeccccCC-CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456          290 SDLAIGSLNNHKELKELYLLGRLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN  368 (442)
Q Consensus       290 ~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  368 (442)
                      .      +..+++|+.|+++++... ...+..+ ++|+.|++++|.+++..  .++.+++|+.|++++|.+.+..+   +
T Consensus       260 ~------~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~  327 (466)
T 1o6v_A          260 P------LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP---V  327 (466)
T ss_dssp             G------GTTCTTCSEEECCSSCCCCCGGGTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG---G
T ss_pred             h------hhcCCCCCEEECCCCccCccccccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh---h
Confidence            1      455677777777766322 2223333 67888888888776532  27778888888888887766443   4


Q ss_pred             CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456          369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      ..+++|+.|++++|. +..+ .....+++|+.|++++|.....+. +..+++|++|++++|+++.+|..
T Consensus       328 ~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNK-VSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             GGCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred             ccCccCCEeECCCCc-cCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence            578888888888874 4444 245678899999999998877743 78899999999999998887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=8.7e-29  Score=231.96  Aligned_cols=286  Identities=19%  Similarity=0.170  Sum_probs=238.4

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+++|++|+++++.+..++. +..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence            457999999999999988864 8899999999999999999877 999999999999999999876 5899999999999


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+... +   .+..+++|+.|++.++......+. +..+++|+.|++++|...  ..+. +..+++|+.|++++|..
T Consensus       118 ~~n~i~~~-~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~--~~~~-~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          118 NEDNISDI-S---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK--DVTP-IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             TTSCCCCC-G---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC--CCGG-GGGCTTCSEEECTTSCC
T ss_pred             cCCcccCc-h---hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC--Cchh-hccCCCCCEEEccCCcc
Confidence            99988743 2   278999999999998876655444 899999999999988654  3333 77899999999999876


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCCC-cccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPGP-LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM  364 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  364 (442)
                      ...+.      +..+++|+.+++.++.... ..+..+ ++|+.|++++|.+++..+  +..+++|+.|++++|.+.+.  
T Consensus       190 ~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          190 EDISP------LASLTSLHYFTAYVNQITDITPVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             CCCGG------GGGCTTCCEEECCSSCCCCCGGGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccc------ccCCCccceeecccCCCCCCchhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence            65433      5678899999999874332 224444 899999999999885433  89999999999999988763  


Q ss_pred             ccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCC
Q 013456          365 TCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       365 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                       ..+..+++|+.|++++|. +..++ ....+++|+.|++++|..... |..+..+++|++|++++|+++.+++
T Consensus       259 -~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             -hhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence             237789999999999974 55553 356789999999999998876 7778999999999999999998876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=7.8e-29  Score=246.91  Aligned_cols=353  Identities=15%  Similarity=0.132  Sum_probs=234.2

Q ss_pred             CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhh-hh
Q 013456           71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPET-IG  149 (442)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~  149 (442)
                      ..++++.+..+......+..+..+++|+.|.+.++.....+...          |.++++|++|++++|.+..++.. ++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----------FYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh----------ccccccCCEEECCCCccCccCHHHhc
Confidence            46778887777766556667788889999988887665555432          35578899999998888777664 88


Q ss_pred             cccccceeccccccccc--CCccccccCCCcEEeecCcc-ccccc-hhhhcccccceeeeccccccccccCCCCCCCCcc
Q 013456          150 KLQLLRYVGLRRTFIDS--IPKSLGDLHSLETLDMKHTN-ITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTN  225 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  225 (442)
                      ++++|++|++++|.+..  .|..++++++|++|++++|. +..+| ..+.++++|++|++++|.+.+..+.  .++.+++
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~  173 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIRD  173 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSE
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh--hhhcccc
Confidence            88999999999988874  46678888999999998887 55666 4688889999999998888765554  5778888


Q ss_pred             cccccccccCCCCCchhhhccccCcceeeEEeeccccc------------------------------hhHHhhcCCccc
Q 013456          226 LRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLG------------------------------KITNLIQGLTSL  275 (442)
Q Consensus       226 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------------------------------~~~~~l~~l~~L  275 (442)
                      |+.|++..+.........+..+++|+.|++++|.....                              .++..+..+++|
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            88887766654332222234567777777776654311                              111222333445


Q ss_pred             ccceeeccccccCCc--cccccccCCcCCCceEEeccccCCCc-------ccccCCCceeEEEEeccCCCCCCcccc-cC
Q 013456          276 ESLRLRSINDFYVPS--DLAIGSLNNHKELKELYLLGRLPGPL-------KLHELPPNLRIFTLSLSYLSEDPMPVL-GQ  345 (442)
Q Consensus       276 ~~L~l~~~~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~  345 (442)
                      +.+++++|.......  ......+....+++.+.+.+......       ......++|+.|++++|.+. .+|..+ ..
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~  332 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQH  332 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHH
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhc
Confidence            555555444322111  01112334456666666655421110       00112357888888888776 344444 56


Q ss_pred             CCCCcEEEeCcccccCcccc--cCCCCCCcccEEEecccCCcceEE---eCCCccccccEEEeccCCCCCCCccCCCCCC
Q 013456          346 LRELKALRLFAHSYIGEKMT--CGNGGFPQLRVLKLWVLKELKEWT---IEEGAMTALEKLEIRNCPKLKMPTELTKLSN  420 (442)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~  420 (442)
                      +++|+.|++++|.+.+..+.  ..++.+++|+.|++++|. ++.++   ...+.+++|+.|++++|....+|..+..+++
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            88888888888887654432  235678888888888864 33332   2345678888888888877766777788888


Q ss_pred             CcEEEeccccccccCCC
Q 013456          421 LKELTLVKKVLKMKPED  437 (442)
Q Consensus       421 L~~L~l~~n~l~~~p~~  437 (442)
                      |++|++++|.++.+|..
T Consensus       412 L~~L~Ls~N~l~~l~~~  428 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTC  428 (549)
T ss_dssp             CCEEECTTSCCSCCCTT
T ss_pred             ccEEECCCCCcccccch
Confidence            88888888888777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=7.2e-29  Score=236.26  Aligned_cols=293  Identities=15%  Similarity=0.117  Sum_probs=244.5

Q ss_pred             cCceeEEEecCCCCCCCChhh-hhcccccceecccccccccCCc-cccccCCCcEEeecCccccccc-hhhhccccccee
Q 013456          127 GYRLLRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHL  203 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L  203 (442)
                      .++++++|+++++.+..+|.. +..+++|++|++++|.+..++. .++.+++|++|++++|.++.+| ..+.++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            368999999999999999875 6889999999999999988864 7899999999999999999765 458899999999


Q ss_pred             eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456          204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI  283 (442)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  283 (442)
                      ++++|.+. .++.. .++.+++|++|++.++......+..++.+++|+.|++++|.+..  +  .+..+++|+.|++++|
T Consensus       123 ~L~~n~l~-~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~--~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          123 VLERNDLS-SLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V--DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             ECCSSCCC-CCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--C--CGGGCTTCSEEECCSS
T ss_pred             ECCCCccC-cCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc--c--ccccccccceeecccc
Confidence            99999887 34432 46899999999999998877777789999999999999987652  2  2566789999999987


Q ss_pred             ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456          284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  363 (442)
                      .....         .....|+.++++++...... ...+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..
T Consensus       197 ~l~~~---------~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~  264 (390)
T 3o6n_A          197 LLSTL---------AIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  264 (390)
T ss_dssp             CCSEE---------ECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             ccccc---------CCCCcceEEECCCCeeeecc-ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence            65432         33568999999887533221 22347999999999998853  68899999999999999987654


Q ss_pred             cccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCC
Q 013456          364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAW  439 (442)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~  439 (442)
                      +. .+..+++|++|++++| .++.++.....+|+|+.|++++|....+|..+..+++|++|++++|+++.+|...+
T Consensus       265 ~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  338 (390)
T 3o6n_A          265 YH-PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH  338 (390)
T ss_dssp             SG-GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred             hh-HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhh
Confidence            43 3788999999999996 56778877788999999999999988888888999999999999999999875433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=6.5e-29  Score=249.24  Aligned_cols=308  Identities=18%  Similarity=0.160  Sum_probs=253.2

Q ss_pred             cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-
Q 013456           92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-  169 (442)
Q Consensus        92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-  169 (442)
                      ..+++++.+.+.++....+|...+          ..+++|++|++++|.+..++. .++.+++|++|+|++|.+..+|. 
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  117 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALL----------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  117 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHH----------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHH----------ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence            357889999998887777776533          448999999999998888765 89999999999999999988865 


Q ss_pred             cccccCCCcEEeecCccccccchhh-hcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhcccc
Q 013456          170 SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLS  248 (442)
Q Consensus       170 ~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~  248 (442)
                      .++++++|++|++++|.++.+|..+ ..+++|++|++++|.+.+..+.  .++.+++|+.|++.++.....   .++.++
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~---~~~~l~  192 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV---DLSLIP  192 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECTTSCCSBC---CGGGCT
T ss_pred             HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--hhhcCCcCcEEECcCCCCCCc---Chhhhh
Confidence            5699999999999999999988874 8999999999999998765443  589999999999998876553   367789


Q ss_pred             CcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc-CCCcccccCCCceeE
Q 013456          249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL-PGPLKLHELPPNLRI  327 (442)
Q Consensus       249 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~  327 (442)
                      +|+.|++++|.+.      .+....+|+.|++++|.+...+..       ..++|+.|+++++. ..+.++..+ ++|+.
T Consensus       193 ~L~~L~l~~n~l~------~l~~~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~  258 (597)
T 3oja_B          193 SLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDTAWLLNY-PGLVE  258 (597)
T ss_dssp             TCSEEECCSSCCS------EEECCTTCSEEECCSSCCCEEECS-------CCSCCCEEECCSSCCCCCGGGGGC-TTCSE
T ss_pred             hhhhhhcccCccc------cccCCchhheeeccCCcccccccc-------cCCCCCEEECCCCCCCCChhhccC-CCCCE
Confidence            9999999988554      134456899999999887655433       23689999999874 334556666 89999


Q ss_pred             EEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCC
Q 013456          328 FTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCP  407 (442)
Q Consensus       328 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  407 (442)
                      |++++|.+++..+..++.+++|+.|++++|.+.+.  ......+++|+.|++++|. +..++...+.+++|+.|++++|.
T Consensus       259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence            99999999887788999999999999999998753  3336779999999999974 55666666789999999999999


Q ss_pred             CCCCCccCCCCCCCcEEEeccccccc
Q 013456          408 KLKMPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       408 ~l~~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      +...|  +..+++|+.|++++|++.+
T Consensus       336 l~~~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          336 IVTLK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCcC--hhhcCCCCEEEeeCCCCCC
Confidence            87765  6788999999999999854

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=252.43  Aligned_cols=354  Identities=18%  Similarity=0.139  Sum_probs=244.3

Q ss_pred             CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hh
Q 013456           69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ET  147 (442)
Q Consensus        69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~  147 (442)
                      ....++++.+..+.........+..+++|+.|.+.++....++...          |.++++|++|++++|.+..++ ..
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA----------YQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT----------TTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc----------ccCchhCCEEeCcCCcCCccCHhh
Confidence            3457888988888777667778889999999999988665555443          356899999999999888776 57


Q ss_pred             hhcccccceecccccccccCCc-cccccCCCcEEeecCccccc--cchhhhcccccceeeeccccccccccCCCCCCCCc
Q 013456          148 IGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITS--LPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT  224 (442)
Q Consensus       148 l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  224 (442)
                      ++++++|++|++++|.+..+|. .++++++|++|++++|.++.  +|..++++++|++|++++|.+....+.  .++.++
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~  173 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLH  173 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG--GGHHHH
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH--Hccchh
Confidence            9999999999999999998875 68999999999999999984  799999999999999999988754332  355555


Q ss_pred             cc----ccccccccCCCC--------------------------------------------------------------
Q 013456          225 NL----RTLWGLSIGKKS--------------------------------------------------------------  238 (442)
Q Consensus       225 ~L----~~L~~~~~~~~~--------------------------------------------------------------  238 (442)
                      +|    +.+++..+....                                                              
T Consensus       174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  253 (570)
T 2z63_A          174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  253 (570)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred             ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence            55    444444333221                                                              


Q ss_pred             -------------------CchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCcccccc----
Q 013456          239 -------------------PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIG----  295 (442)
Q Consensus       239 -------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~----  295 (442)
                                         ..+..+..+++|+.|+++++..  ..++..+..+ +|+.|++++|.....+... +.    
T Consensus       254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~-l~~L~~  329 (570)
T 2z63_A          254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPTLK-LKSLKR  329 (570)
T ss_dssp             GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCBCB-CSSCCE
T ss_pred             ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCccc-ccccCE
Confidence                               1123344566677777766643  2445445544 5556665555444322210 00    


Q ss_pred             ------------ccCCcCCCceEEeccccCC----------------------------CcccccCCCceeEEEEeccCC
Q 013456          296 ------------SLNNHKELKELYLLGRLPG----------------------------PLKLHELPPNLRIFTLSLSYL  335 (442)
Q Consensus       296 ------------~~~~~~~L~~l~l~~~~~~----------------------------~~~~~~~~~~L~~L~l~~~~~  335 (442)
                                  ....+++|+.|+++++...                            +..+..+ ++|+.|++++|.+
T Consensus       330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l-~~L~~L~l~~n~l  408 (570)
T 2z63_A          330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL  408 (570)
T ss_dssp             EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETC-TTCCEEECTTSEE
T ss_pred             EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccccccc-CCCCEEEccCCcc
Confidence                        0023445555555443211                            0112222 4556666665555


Q ss_pred             CCCCc-ccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCc-ceEEeCCCccccccEEEeccCCCCCC-C
Q 013456          336 SEDPM-PVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKEL-KEWTIEEGAMTALEKLEIRNCPKLKM-P  412 (442)
Q Consensus       336 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~~-p  412 (442)
                      .+..+ ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|... ..++...+.+++|+.|++++|..... |
T Consensus       409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  487 (570)
T 2z63_A          409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  487 (570)
T ss_dssp             ESCTTSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccchhhhhcCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence            44333 3566677777777777766543332 3667888888888887544 25666677889999999999988877 8


Q ss_pred             ccCCCCCCCcEEEeccccccccCCCCCC
Q 013456          413 TELTKLSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       413 ~~l~~l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      ..+..+++|++|++++|+++.+|+..+.
T Consensus       488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          488 TAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             hhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            8889999999999999999999887553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=4.3e-28  Score=236.26  Aligned_cols=311  Identities=19%  Similarity=0.165  Sum_probs=203.5

Q ss_pred             cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456           92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL  171 (442)
Q Consensus        92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~  171 (442)
                      ..+++++.|.+.++....++.            +..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~------------~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~  108 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG------------VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L  108 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             hHhccccEEecCCCCCccCcc------------hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h
Confidence            357889999888776554442            3568999999999999999887 9999999999999999998877 9


Q ss_pred             cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456          172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK  251 (442)
Q Consensus       172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~  251 (442)
                      +++++|++|++++|.++.++. +.++++|++|++++|.+... +   .++.+++|+.|++.. .... . ..++.+++|+
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~-~~~~-~-~~~~~l~~L~  180 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDI-S---ALSGLTSLQQLSFGN-QVTD-L-KPLANLTTLE  180 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC-G---GGTTCTTCSEEEEEE-SCCC-C-GGGTTCTTCC
T ss_pred             cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCC-h---hhccCCcccEeecCC-cccC-c-hhhccCCCCC
Confidence            999999999999999998876 89999999999999987642 2   256666666666532 1111 1 1255555666


Q ss_pred             eeeEEeeccccchhHHhhcCCcccccceeeccccccCCccc----------------cccccCCcCCCceEEeccccCC-
Q 013456          252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDL----------------AIGSLNNHKELKELYLLGRLPG-  314 (442)
Q Consensus       252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~~L~~l~l~~~~~~-  314 (442)
                      .|++++|...  .+ ..+..+++|+.|++++|.....+...                ....+..+++|+.|+++++... 
T Consensus       181 ~L~l~~n~l~--~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~  257 (466)
T 1o6v_A          181 RLDISSNKVS--DI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN  257 (466)
T ss_dssp             EEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             EEECcCCcCC--CC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc
Confidence            6666555432  11 12444555555555554433221100                0112344556666666555321 


Q ss_pred             CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCc
Q 013456          315 PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGA  394 (442)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  394 (442)
                      ...+..+ ++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+   +..+++|+.|++++|.. ..+.. ...
T Consensus       258 ~~~~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~-~~~  329 (466)
T 1o6v_A          258 LAPLSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNI-SDISP-VSS  329 (466)
T ss_dssp             CGGGTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCC-SCCGG-GGG
T ss_pred             chhhhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcC-CCchh-hcc
Confidence            1123333 566666666666654322  6666777777777766654322   45677777777777643 33222 456


Q ss_pred             cccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456          395 MTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       395 ~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                      +++|+.|++++|..... ..+.++++|+.|++++|+++.+++
T Consensus       330 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch
Confidence            77788888887766554 457778888888888888876654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.9e-29  Score=244.43  Aligned_cols=340  Identities=15%  Similarity=0.111  Sum_probs=212.8

Q ss_pred             CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhc
Q 013456           71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGK  150 (442)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~  150 (442)
                      ..++++.+..+......+..+..+++|+.|.+.++.....+..          .|.++++|++|++++|.+..+|..  .
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS----------VFKFNQELEYLDLSHNKLVKISCH--P   88 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG----------GGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH----------HhhcccCCCEEecCCCceeecCcc--c
Confidence            4566666655554444444455666677776666654433222          224466677777776666666655  5


Q ss_pred             ccccceeccccccccc--CCccccccCCCcEEeecCccccccchhhhccccc--ceeeeccccc--cccccCC-------
Q 013456          151 LQLLRYVGLRRTFIDS--IPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTL--RHLYLNDIHL--QMSVQKP-------  217 (442)
Q Consensus       151 l~~L~~L~L~~~~i~~--lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~-------  217 (442)
                      +++|++|++++|.+..  +|..++++++|++|++++|.++.  ..+..+++|  +.|++++|.+  .+..|..       
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~  166 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE  166 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccc
Confidence            6677777777766654  35666667777777777666654  334555555  6666666655  2222110       


Q ss_pred             -----------------CCCCCCcccccccccccCCCC------Cchhhhcc---------------------------c
Q 013456          218 -----------------FVKPSLTNLRTLWGLSIGKKS------PPLNWLEN---------------------------L  247 (442)
Q Consensus       218 -----------------~~~~~l~~L~~L~~~~~~~~~------~~~~~l~~---------------------------l  247 (442)
                                       ..+..+++|+.+++..+....      .....++.                           .
T Consensus       167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  246 (520)
T 2z7x_B          167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH  246 (520)
T ss_dssp             EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred             eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence                             011224444444443332000      00001111                           1


Q ss_pred             cCcceeeEEeeccccchhHHhh-----------------------------------------------------cCCcc
Q 013456          248 SDLKNLGLICNIASLGKITNLI-----------------------------------------------------QGLTS  274 (442)
Q Consensus       248 ~~L~~L~l~~~~~~~~~~~~~l-----------------------------------------------------~~l~~  274 (442)
                      ++|+.|++++|.+. +.+|..+                                                     ..+++
T Consensus       247 ~~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~  325 (520)
T 2z7x_B          247 TTVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP  325 (520)
T ss_dssp             SSCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred             CcccEEEeeccccc-CccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence            23444444444322 1222211                                                     45667


Q ss_pred             cccceeeccccccCCccccccccCCcCCCceEEeccccCCC-----cccccCCCceeEEEEeccCCCCCCcc-cccCCCC
Q 013456          275 LESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP-----LKLHELPPNLRIFTLSLSYLSEDPMP-VLGQLRE  348 (442)
Q Consensus       275 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~  348 (442)
                      |+.|++++|.......    ..+..+++|+.|+++++....     ..+..+ ++|+.|++++|.+++.++. .+..+++
T Consensus       326 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVF----ENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             CCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             ccEEEeECCccChhhh----hhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCcc
Confidence            7777777766554221    246778999999999875331     234555 8999999999999874554 4788999


Q ss_pred             CcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCcc-CCCCCCCcEEEec
Q 013456          349 LKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTE-LTKLSNLKELTLV  427 (442)
Q Consensus       349 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~-l~~l~~L~~L~l~  427 (442)
                      |+.|++++|.+.+..+.. +.  ++|+.|++++| .++.++.....+++|+.|++++|.+..+|.. +..+++|++|+++
T Consensus       401 L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             CCEEECCSSCCCGGGGGS-CC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCcchhhh-hc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence            999999999987655443 21  79999999997 4567777667899999999999998888766 8899999999999


Q ss_pred             ccccccc
Q 013456          428 KKVLKMK  434 (442)
Q Consensus       428 ~n~l~~~  434 (442)
                      +|++.+-
T Consensus       477 ~N~~~c~  483 (520)
T 2z7x_B          477 TNPWDCS  483 (520)
T ss_dssp             SSCBCCC
T ss_pred             CCCCccc
Confidence            9998653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=5.1e-28  Score=252.13  Aligned_cols=326  Identities=15%  Similarity=0.098  Sum_probs=232.8

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCC-CCCCC-hhhhhcccccceecccccccccC-Cc
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDV-YKPVL-PETIGKLQLLRYVGLRRTFIDSI-PK  169 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l-~~~l~~l~~L~~L~L~~~~i~~l-p~  169 (442)
                      ..++++.|.++++....++...          |.++++|++|++++| ....+ |..++++++|++|+|++|.+..+ |.
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~----------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASS----------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSS----------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCcCEEECCCCcCCccChhH----------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            5588999999988766554443          356899999999988 55566 67899999999999999999877 88


Q ss_pred             cccccCCCcEEeecCccccc-cchh--hhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhcc
Q 013456          170 SLGDLHSLETLDMKHTNITS-LPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLEN  246 (442)
Q Consensus       170 ~~~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~  246 (442)
                      .++++++|++|++++|.++. +|..  +.++++|++|++++|.+.+..+ +..++++++|++|++.++......+..++.
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            89999999999999999984 5655  8899999999999999875443 236899999999999998887777777777


Q ss_pred             c--cCcceeeEEeeccccchhHHhhcCCcc------cccceeeccccccCCcccc-------------------------
Q 013456          247 L--SDLKNLGLICNIASLGKITNLIQGLTS------LESLRLRSINDFYVPSDLA-------------------------  293 (442)
Q Consensus       247 l--~~L~~L~l~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~-------------------------  293 (442)
                      +  ++|+.|+++.|... ...+..+..+.+      |+.|++++|..........                         
T Consensus       171 l~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLY-SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHCSSCCCEECCSBSC-CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             ccCCccceEECCCCccc-cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence            7  89999999988665 444444444443      8999998875432111100                         


Q ss_pred             -------ccccCC--cCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccC
Q 013456          294 -------IGSLNN--HKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG  361 (442)
Q Consensus       294 -------~~~~~~--~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  361 (442)
                             ...+..  .++|+.|+++++...   +..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  328 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE  328 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence                   001111  256777777665321   2233344 677778887777776666677777778888887777654


Q ss_pred             cccccCCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCC
Q 013456          362 EKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       362 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      ..+ ..+..+++|+.|++++|. +..++ .....+++|+.|++++|....++    .+++|++|++++|+++.+|..
T Consensus       329 ~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~~l~~~  399 (844)
T 3j0a_A          329 LYS-SNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKI  399 (844)
T ss_dssp             CCS-CSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCCCCCCC
T ss_pred             cCH-HHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCccccccc
Confidence            333 336677777888877764 33332 33456777777777777665543    266777777777777766653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=4.9e-28  Score=234.18  Aligned_cols=305  Identities=17%  Similarity=0.108  Sum_probs=223.8

Q ss_pred             CccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCc
Q 013456           90 DKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK  169 (442)
Q Consensus        90 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~  169 (442)
                      .+..+++|+.|.+.++.....|            .+..+++|++|++++|.+..+|  ++.+++|++|++++|.+..+| 
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~------------~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT------------GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-  101 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT------------TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred             ChhHcCCCCEEEccCCCcccCh------------hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence            3446788888888877655443            1245788999999988888775  788888999999988888875 


Q ss_pred             cccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccC
Q 013456          170 SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSD  249 (442)
Q Consensus       170 ~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~  249 (442)
                       ++++++|++|++++|.++.+|  ++.+++|++|++++|.+.+ ++    ++.+++|+.|++..+...+..  .++.+++
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID----VSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC----CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             -cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec----cccCCcCCEEECCCCCccccc--ccccCCc
Confidence             888889999999998888775  7888899999998888765 22    678888888888887655444  4778888


Q ss_pred             cceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEE
Q 013456          250 LKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFT  329 (442)
Q Consensus       250 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~  329 (442)
                      |+.|++++|.+.  .++  +..+++|+.|++++|.....       .+..+++|+.|+++++......+..+ ++|+.|+
T Consensus       172 L~~L~ls~n~l~--~l~--l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~ip~~~l-~~L~~L~  239 (457)
T 3bz5_A          172 LTTLDCSFNKIT--ELD--VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFD  239 (457)
T ss_dssp             CCEEECCSSCCC--CCC--CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCCCCTTC-TTCSEEE
T ss_pred             CCEEECCCCccc--eec--cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccccCcccc-CCCCEEE
Confidence            999999888654  233  67788889999888876554       25567888888888874332224444 7889999


Q ss_pred             EeccCCCCCCcccccCCC-------CCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeC--------CCc
Q 013456          330 LSLSYLSEDPMPVLGQLR-------ELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIE--------EGA  394 (442)
Q Consensus       330 l~~~~~~~~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~  394 (442)
                      +++|.+++..+..+..+.       +|+.|++++|...+..+   .+.+++|+.|++++|..+..++..        ...
T Consensus       240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~  316 (457)
T 3bz5_A          240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ  316 (457)
T ss_dssp             CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred             eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence            999888865433333322       34445555555444333   457888999999998877766542        345


Q ss_pred             cccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456          395 MTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       395 ~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                      +++|+.|++++|.....+  +.++++|+.|++++|+++.+|.
T Consensus       317 ~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~  356 (457)
T 3bz5_A          317 NPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS  356 (457)
T ss_dssp             CTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTT
T ss_pred             cccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccc
Confidence            678888888888877753  7888999999999998887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=4.8e-28  Score=242.97  Aligned_cols=293  Identities=15%  Similarity=0.101  Sum_probs=245.9

Q ss_pred             cCceeEEEecCCCCCCCChhh-hhcccccceecccccccccCC-ccccccCCCcEEeecCccccccch-hhhccccccee
Q 013456          127 GYRLLRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHL  203 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L  203 (442)
                      .+.++++|+++++.+..+|.. +..+++|++|++++|.+..+| ..++.+++|++|+|++|.++.+|. .++++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            368899999999999998875 688999999999999998875 479999999999999999997765 46899999999


Q ss_pred             eeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc
Q 013456          204 YLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI  283 (442)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  283 (442)
                      ++++|.+.. +|.. .++.+++|++|++.++......+..++.+++|+.|++++|.+..  +  .+..+++|+.|++++|
T Consensus       129 ~L~~n~l~~-l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~--~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          129 VLERNDLSS-LPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--V--DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             ECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB--C--CGGGCTTCSEEECCSS
T ss_pred             EeeCCCCCC-CCHH-HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC--c--ChhhhhhhhhhhcccC
Confidence            999998873 3432 46899999999999998888778889999999999999986652  2  2556789999999988


Q ss_pred             ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456          284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  363 (442)
                      .....         ....+|+.|+++++..... ....+++|+.|++++|.+++  +..++.+++|+.|++++|.+.+..
T Consensus       203 ~l~~l---------~~~~~L~~L~ls~n~l~~~-~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          203 LLSTL---------AIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             CCSEE---------ECCTTCSEEECCSSCCCEE-ECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred             ccccc---------cCCchhheeeccCCccccc-ccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC
Confidence            65432         3456899999988753211 22334799999999999886  478999999999999999987654


Q ss_pred             cccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCC
Q 013456          364 MTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAW  439 (442)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~  439 (442)
                      +.. +..+++|+.|++++| .+..++...+.+|+|+.|++++|....+|..+..+++|+.|+|++|++..+|...+
T Consensus       271 ~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~  344 (597)
T 3oja_B          271 YHP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH  344 (597)
T ss_dssp             SGG-GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTT
T ss_pred             HHH-hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhc
Confidence            444 889999999999996 56778887788999999999999998888889999999999999999998875543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.2e-27  Score=238.66  Aligned_cols=338  Identities=15%  Similarity=0.109  Sum_probs=246.2

Q ss_pred             CCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhh
Q 013456           70 DLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIG  149 (442)
Q Consensus        70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~  149 (442)
                      ...++++.+..+.........+..+++|+.|.+.++....++.+.          |.++++|++|++++|.+..+|..  
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~lp~~--  118 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV----------FLFNQDLEYLDVSHNRLQNISCC--  118 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT----------TTTCTTCCEEECTTSCCCEECSC--
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH----------hCCCCCCCEEECCCCcCCccCcc--
Confidence            367888998888877666678889999999999998766655443          35589999999999999998877  


Q ss_pred             cccccceecccccccccCC--ccccccCCCcEEeecCccccccchhhhccccc--ceeeeccccc--cccccCC------
Q 013456          150 KLQLLRYVGLRRTFIDSIP--KSLGDLHSLETLDMKHTNITSLPKSIWKVKTL--RHLYLNDIHL--QMSVQKP------  217 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~------  217 (442)
                      .+++|++|++++|.+..+|  ..++++++|++|++++|.++.  ..+..+++|  ++|++++|.+  .+..+..      
T Consensus       119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~  196 (562)
T 3a79_B          119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT  196 (562)
T ss_dssp             CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred             ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCc
Confidence            8999999999999998764  789999999999999999875  245556666  9999999877  3322211      


Q ss_pred             ------------------CCCCCCcccccccccccCCC----------------------------C----Cchhhhccc
Q 013456          218 ------------------FVKPSLTNLRTLWGLSIGKK----------------------------S----PPLNWLENL  247 (442)
Q Consensus       218 ------------------~~~~~l~~L~~L~~~~~~~~----------------------------~----~~~~~l~~l  247 (442)
                                        ..+..+++|+.+++..+...                            +    ..+. ....
T Consensus       197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~~~~  275 (562)
T 3a79_B          197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWP  275 (562)
T ss_dssp             EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-HHTT
T ss_pred             ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-hhhc
Confidence                              01123344555444433100                            0    0000 0011


Q ss_pred             cCcceeeEEeeccccchhHHhh-----------------------------------------------------cCCcc
Q 013456          248 SDLKNLGLICNIASLGKITNLI-----------------------------------------------------QGLTS  274 (442)
Q Consensus       248 ~~L~~L~l~~~~~~~~~~~~~l-----------------------------------------------------~~l~~  274 (442)
                      ++|+.|++++|.+. +.+|..+                                                     ..+++
T Consensus       276 ~~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~  354 (562)
T 3a79_B          276 RPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS  354 (562)
T ss_dssp             SSEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred             ccccEEEEeccEee-ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence            25555555555332 1111111                                                     56678


Q ss_pred             cccceeeccccccCCccccccccCCcCCCceEEeccccCCC-----cccccCCCceeEEEEeccCCCCCCc-ccccCCCC
Q 013456          275 LESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP-----LKLHELPPNLRIFTLSLSYLSEDPM-PVLGQLRE  348 (442)
Q Consensus       275 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~  348 (442)
                      |+.|++++|.......    ..+..+++|+.|+++++....     ..+..+ ++|+.|++++|.+++..+ ..+..+++
T Consensus       355 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          355 FTFLNFTQNVFTDSVF----QGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             CCEEECCSSCCCTTTT----TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             ceEEECCCCccccchh----hhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCccc
Confidence            8888888877655222    346788999999999874321     224455 899999999999987344 45888999


Q ss_pred             CcEEEeCcccccCcccccCCCCC-CcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCcc-CCCCCCCcEEEe
Q 013456          349 LKALRLFAHSYIGEKMTCGNGGF-PQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTE-LTKLSNLKELTL  426 (442)
Q Consensus       349 L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~-l~~l~~L~~L~l  426 (442)
                      |+.|++++|.+.+..+.    .+ ++|+.|++++| .++.++.....+++|+.|++++|....+|.. +..+++|+.|++
T Consensus       430 L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             CCEEECCSSCCCGGGGS----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred             CCEEECCCCCCCcchhh----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence            99999999998765443    34 79999999997 5678887777899999999999999888776 899999999999


Q ss_pred             ccccccc
Q 013456          427 VKKVLKM  433 (442)
Q Consensus       427 ~~n~l~~  433 (442)
                      ++|++.+
T Consensus       505 ~~N~~~c  511 (562)
T 3a79_B          505 HDNPWDC  511 (562)
T ss_dssp             CSCCBCC
T ss_pred             cCCCcCC
Confidence            9999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=235.96  Aligned_cols=297  Identities=19%  Similarity=0.154  Sum_probs=245.2

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCcccccc-chhhhcccccceeeecccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIH  209 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~  209 (442)
                      +.++.++..+..+|..+.  +++++|++++|.+..+ |..+.++++|++|+|++|.++.+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            578888888888988664  5899999999999988 56799999999999999999965 7789999999999999998


Q ss_pred             ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCC
Q 013456          210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVP  289 (442)
Q Consensus       210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  289 (442)
                      +.. ++.. .++++++|+.|++.++......+..+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|.....+
T Consensus        92 l~~-~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           92 LKL-IPLG-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             CCS-CCTT-SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCc-cCcc-cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccC
Confidence            874 3322 5789999999999999887777778999999999999998765 445667889999999999999876654


Q ss_pred             ccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456          290 SDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC  366 (442)
Q Consensus       290 ~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  366 (442)
                      ..    .+..+++|+.|++.++...   +..+..+ ++|+.|++++|...+..+.......+|+.|++++|.+... +..
T Consensus       169 ~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~  242 (477)
T 2id5_A          169 TE----ALSHLHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYL  242 (477)
T ss_dssp             HH----HHTTCTTCCEEEEESCCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CHH
T ss_pred             hh----HhcccCCCcEEeCCCCcCcEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCccccc-CHH
Confidence            43    3667899999999886422   2334445 8999999999987766666666677999999999988753 333


Q ss_pred             CCCCCCcccEEEecccCCcceEE-eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCCC
Q 013456          367 GNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       367 ~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      .+..+++|+.|++++|. +..++ .....+++|+.|++++|..... |..+..+++|++|+|++|.++.+|+..+.
T Consensus       243 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence            37789999999999975 44443 3457889999999999998887 88899999999999999999999986543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.4e-27  Score=243.86  Aligned_cols=349  Identities=19%  Similarity=0.167  Sum_probs=226.2

Q ss_pred             ceeEEEEecCCCCCCCCCCcccccc--ceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhh
Q 013456           72 CVCRLAEHLDNLSSITPSDKKQFEY--LHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETI  148 (442)
Q Consensus        72 ~~~~l~~~~~~~~~~~~~~~~~~~~--lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l  148 (442)
                      .++.+.+..+.........+..++.  |+.|.+.++.....+...          +..+++|++|++++|.+..+ |..+
T Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~  292 (680)
T 1ziw_A          223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----------FAWLPQLEYFFLEYNNIQHLFSHSL  292 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT----------TTTCTTCCEEECCSCCBSEECTTTT
T ss_pred             cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc----------ccCcccccEeeCCCCccCccChhhh
Confidence            3444444444333333444444443  777777766544443322          24467777777777765543 4467


Q ss_pred             hcccccceecccccccc------cCCc----cccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCC
Q 013456          149 GKLQLLRYVGLRRTFID------SIPK----SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKP  217 (442)
Q Consensus       149 ~~l~~L~~L~L~~~~i~------~lp~----~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~  217 (442)
                      .++++|++|+++++...      .+|.    .++.+++|++|++++|.+..+ |..+.++++|++|++++|.+.......
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~  372 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN  372 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred             cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence            77777777777765332      3343    566777788888888777754 345677788888888777543221111


Q ss_pred             CCCCCC--cccccccccccCCCCCchhhhccccCcceeeEEeeccccchh-HHhhcCCcccccceeeccccccCCccccc
Q 013456          218 FVKPSL--TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKI-TNLIQGLTSLESLRLRSINDFYVPSDLAI  294 (442)
Q Consensus       218 ~~~~~l--~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  294 (442)
                      ..+..+  ++|+.|++..+......+..+..+++|+.|+++.|... +.+ +..+..+++|+.|++++|.....+..   
T Consensus       373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---  448 (680)
T 1ziw_A          373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRN---  448 (680)
T ss_dssp             TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE-EECCSGGGTTCTTCCEEECCSCSEEECCTT---
T ss_pred             hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc-cccCcccccCcccccEEecCCCCcceeChh---
Confidence            122222  46777777777666666677888888888888888665 333 35677788888888888776544332   


Q ss_pred             cccCCcCCCceEEeccccC-----CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc------
Q 013456          295 GSLNNHKELKELYLLGRLP-----GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK------  363 (442)
Q Consensus       295 ~~~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~------  363 (442)
                       .+..+++|+.|++.++..     .+..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..      
T Consensus       449 -~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  526 (680)
T 1ziw_A          449 -SFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG  526 (680)
T ss_dssp             -TTTTCTTCCEEECTTSCCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred             -hhhcCcccccchhccccccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence             355677888888876531     23344444 78888888888888666667888888888888888776431      


Q ss_pred             -cccCCCCCCcccEEEecccCCcceEEe-CCCccccccEEEeccCCCCCCC-ccCCCCCCCcEEEeccccccccCCC
Q 013456          364 -MTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEKLEIRNCPKLKMP-TELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       364 -~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~p-~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                       +...+..+++|+.|++++| .++.++. ..+.+++|+.|++++|....+| ..+..+++|++|++++|+++.+|+.
T Consensus       527 ~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          527 GPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             SCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             CcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence             1112567788888888876 3445553 3567788888888888777774 3457788888888888888777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=3.6e-27  Score=228.09  Aligned_cols=278  Identities=17%  Similarity=0.087  Sum_probs=227.7

Q ss_pred             hhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456          125 IRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY  204 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  204 (442)
                      +.++++|++|+++++.+..+| .++.+++|++|++++|.+..+|  ++.+++|++|++++|.++.+|  ++++++|++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            456899999999999998887 7899999999999999999986  899999999999999999886  88999999999


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN  284 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  284 (442)
                      +++|.+.+ ++    ++.+++|+.|++..+...+.   .++.+++|+.|+++.|... +.+  .+..+++|+.|++++|.
T Consensus       113 L~~N~l~~-l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          113 CDTNKLTK-LD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI-TKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCSSCCSC-CC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC-CCC--CCTTCTTCCEEECCSSC
T ss_pred             CCCCcCCe-ec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc-ccc--ccccCCcCCEEECCCCc
Confidence            99998875 32    78999999999998877663   3788999999999988433 333  46788999999999998


Q ss_pred             cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456          285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM  364 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  364 (442)
                      ....+       +..+++|+.|+++++......+..+ ++|+.|++++|.+++ ++  ++.+++|+.|++++|.+.+.. 
T Consensus       182 l~~l~-------l~~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-  249 (457)
T 3bz5_A          182 ITELD-------VSQNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-  249 (457)
T ss_dssp             CCCCC-------CTTCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred             cceec-------cccCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence            76643       4578899999999885444445565 899999999999986 33  889999999999999987643 


Q ss_pred             ccCCCCCCccc----------EEEecccCCcceEEeCCCccccccEEEeccCCCCCC-Cc--------cCCCCCCCcEEE
Q 013456          365 TCGNGGFPQLR----------VLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PT--------ELTKLSNLKELT  425 (442)
Q Consensus       365 ~~~~~~~~~L~----------~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~--------~l~~l~~L~~L~  425 (442)
                         ...+++|+          .|++++|..+..++  .+.+++|+.|++++|..++. |.        .+.++++|++|+
T Consensus       250 ---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~  324 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY  324 (457)
T ss_dssp             ---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             ---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence               33455554          55566665555565  46789999999999986543 22        356789999999


Q ss_pred             eccccccccC
Q 013456          426 LVKKVLKMKP  435 (442)
Q Consensus       426 l~~n~l~~~p  435 (442)
                      +++|+++.+|
T Consensus       325 L~~N~l~~l~  334 (457)
T 3bz5_A          325 LNNTELTELD  334 (457)
T ss_dssp             CTTCCCSCCC
T ss_pred             CCCCcccccc
Confidence            9999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=7.6e-27  Score=232.51  Aligned_cols=330  Identities=17%  Similarity=0.156  Sum_probs=241.5

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCcc-cc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKS-LG  172 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~-~~  172 (442)
                      ++++.|.+.++.....+...          |.++++|++|++++|.+..++ ..++++++|++|++++|.+..+|.. ++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGD----------LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             TTCCEEECCSSCCCEECSST----------TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             CCccEEECcCCccCccChhh----------hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence            78999999988766554432          356899999999999888776 5799999999999999999988765 89


Q ss_pred             ccCCCcEEeecCcccc--ccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456          173 DLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL  250 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L  250 (442)
                      ++++|++|++++|.++  ..|..+.++++|++|++++|...+.++.. .++.+++|+.|++.++...+..+..++.+++|
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccC
Confidence            9999999999999998  45778999999999999999865555533 68999999999999998887788889999999


Q ss_pred             ceeeEEeeccccchhHHh-hcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC-------CcccccC-
Q 013456          251 KNLGLICNIASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG-------PLKLHEL-  321 (442)
Q Consensus       251 ~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------~~~~~~~-  321 (442)
                      ++|+++.|..  ..++.. +..+++|+.|++++|.....+... ......+++|+.+.+.++...       ......+ 
T Consensus       175 ~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~  251 (549)
T 2z81_A          175 HHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL  251 (549)
T ss_dssp             EEEEEECSBS--TTHHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred             ceEecccCcc--cccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence            9999998865  344444 356899999999998876532110 111223556666666543210       0001111 


Q ss_pred             ----------------------------CCceeEEEEeccCCCCC-----CcccccCCCCCcEEEeCcccccCcccccCC
Q 013456          322 ----------------------------PPNLRIFTLSLSYLSED-----PMPVLGQLRELKALRLFAHSYIGEKMTCGN  368 (442)
Q Consensus       322 ----------------------------~~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  368 (442)
                                                  ..+++.|++.++.+...     ....+...++|+.|++++|.+.. .+...+
T Consensus       252 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~  330 (549)
T 2z81_A          252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFS  330 (549)
T ss_dssp             TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHH
T ss_pred             cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHH
Confidence                                        13444444444433221     11112334678888888877653 333223


Q ss_pred             CCCCcccEEEecccCCcceEE---eCCCccccccEEEeccCCCCCCC---ccCCCCCCCcEEEeccccccccCCCCC
Q 013456          369 GGFPQLRVLKLWVLKELKEWT---IEEGAMTALEKLEIRNCPKLKMP---TELTKLSNLKELTLVKKVLKMKPEDAW  439 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~p---~~l~~l~~L~~L~l~~n~l~~~p~~~~  439 (442)
                      ..+++|++|++++|.....++   ...+.+++|+.|++++|.....+   ..+..+++|++|++++|+++.+|+..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  407 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ  407 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc
Confidence            468999999999987554442   23568899999999999887763   458899999999999999999998644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=2e-26  Score=233.44  Aligned_cols=357  Identities=15%  Similarity=0.090  Sum_probs=234.4

Q ss_pred             CCCceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-h
Q 013456           69 SDLCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-T  147 (442)
Q Consensus        69 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~  147 (442)
                      .+..++++.+..+....+....+..+++|+.|.++++....++++.|          .++++|++|+|++|.+..+|. .
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f----------~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----------QSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT----------TTCTTCCEEECTTCCCCEECGGG
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh----------cCCCCCCEEEccCCcCCCCCHHH
Confidence            34578999998888877778889999999999999987776666544          558999999999999998876 6


Q ss_pred             hhcccccceecccccccccCCc-cccccCCCcEEeecCcccc--ccchhhhcccccceeeeccccccccccCCCCCCCCc
Q 013456          148 IGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLT  224 (442)
Q Consensus       148 l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  224 (442)
                      |.++++|++|++++|.+..+|. .++++++|++|++++|.++  .+|..++.+++|++|++++|.+.+..+.  .+..+.
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~  197 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLH  197 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHH
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc--cccchh
Confidence            8999999999999999999875 5899999999999999987  5678899999999999999977543221  111111


Q ss_pred             ccc---------------------------cccccccCC-------------------------------CC--------
Q 013456          225 NLR---------------------------TLWGLSIGK-------------------------------KS--------  238 (442)
Q Consensus       225 ~L~---------------------------~L~~~~~~~-------------------------------~~--------  238 (442)
                      +++                           .+.+..+..                               ..        
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  277 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  277 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred             hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence            111                           110000000                               00        


Q ss_pred             -----------------------------------------CchhhhccccCcceeeEEeeccccc--------------
Q 013456          239 -----------------------------------------PPLNWLENLSDLKNLGLICNIASLG--------------  263 (442)
Q Consensus       239 -----------------------------------------~~~~~l~~l~~L~~L~l~~~~~~~~--------------  263 (442)
                                                               .....+....+++.|++..+.....              
T Consensus       278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~  357 (635)
T 4g8a_A          278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT  357 (635)
T ss_dssp             GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred             ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence                                                     0001123334566666665532100              


Q ss_pred             ----hhHHhhcCCcccccceeeccccccCCc---c------------------ccccccCCcCCCceEEecccc----CC
Q 013456          264 ----KITNLIQGLTSLESLRLRSINDFYVPS---D------------------LAIGSLNNHKELKELYLLGRL----PG  314 (442)
Q Consensus       264 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~---~------------------~~~~~~~~~~~L~~l~l~~~~----~~  314 (442)
                          ..+.....+++|+.++++.|.......   .                  .....+..++.|+.+.+.++.    ..
T Consensus       358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  437 (635)
T 4g8a_A          358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE  437 (635)
T ss_dssp             SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred             cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence                001112245677777777665432100   0                  001223455666666665431    11


Q ss_pred             CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE-EeCCC
Q 013456          315 PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW-TIEEG  393 (442)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~  393 (442)
                      ...+..+ .+++.++++.|.+....+..+..+++|+.|++++|..........+..+++|++|++++|. ++.+ +...+
T Consensus       438 ~~~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~  515 (635)
T 4g8a_A          438 FSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN  515 (635)
T ss_dssp             SCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred             ccccccc-cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHc
Confidence            1222233 6777777777777666666777777888888877765544444456777888888888764 4443 44556


Q ss_pred             ccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCC
Q 013456          394 AMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAW  439 (442)
Q Consensus       394 ~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~  439 (442)
                      .+++|++|++++|.+..+ |..+..+++|+.|+|++|+|+.+++..+
T Consensus       516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            777888888888877776 5567777888888888888877776644

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.9e-26  Score=213.70  Aligned_cols=241  Identities=22%  Similarity=0.258  Sum_probs=183.1

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ...+++++|+++++.+..+|..++++++|++|++++|.+..+|..++++++|++|++++|.++.+|..+.++++|++|++
T Consensus        78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|...+.+|..  ++..      .         ....++.+++|+.|++++|.+.  .+|..+                
T Consensus       158 ~~n~~~~~~p~~--~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~--~lp~~l----------------  202 (328)
T 4fcg_A          158 RACPELTELPEP--LAST------D---------ASGEHQGLVNLQSLRLEWTGIR--SLPASI----------------  202 (328)
T ss_dssp             EEETTCCCCCSC--SEEE------C----------CCCEEESTTCCEEEEEEECCC--CCCGGG----------------
T ss_pred             CCCCCccccChh--Hhhc------c---------chhhhccCCCCCEEECcCCCcC--cchHhh----------------
Confidence            998776655532  2110      0         1112344445555555544321  222222                


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT  365 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  365 (442)
                                                       ..+ ++|+.|++++|.+++ ++..++.+++|+.|++++|.+.+..+.
T Consensus       203 ---------------------------------~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          203 ---------------------------------ANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             ---------------------------------GGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             ---------------------------------cCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH
Confidence                                             223 567777777777663 455678888888888888887765544


Q ss_pred             cCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456          366 CGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       366 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      . +..+++|++|++++|.....++...+.+++|+.|++++|...+. |..+.++++|+.+.+..+.+..++..
T Consensus       248 ~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          248 I-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             C-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred             H-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence            3 77888899999988888888887788899999999999988876 99999999999999999888777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=4.3e-26  Score=212.02  Aligned_cols=284  Identities=19%  Similarity=0.195  Sum_probs=203.8

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCcccccc-chhhhcccccceeeec
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLN  206 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~  206 (442)
                      .++++++++++.+..+|..+.  ++|++|++++|.+..++. .++++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            467888888887777776553  578888888888877755 578888888888888888765 6778888888888888


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecccc-chhHHhhcCCcccccceeecccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASL-GKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      +|.+. .+|..  +  .++|+.|++.++......+..+..+++|+.|+++.|.... ...+..+..+++|+.|++++|..
T Consensus       109 ~n~l~-~l~~~--~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          109 KNQLK-ELPEK--M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             SSCCS-BCCSS--C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCcCC-ccChh--h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            88765 33332  2  2678888887777766666778888888998888876541 24456677888899999988877


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE  362 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  362 (442)
                      ...+...       .++|++|+++++...   +..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.. 
T Consensus       184 ~~l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  254 (330)
T 1xku_A          184 TTIPQGL-------PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-  254 (330)
T ss_dssp             CSCCSSC-------CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-
T ss_pred             ccCCccc-------cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-
Confidence            6655432       267888888776422   3344555 788889998888876666678888889999998888763 


Q ss_pred             ccccCCCCCCcccEEEecccCCcceEEeC-C------CccccccEEEeccCCCCC--C-CccCCCCCCCcEEEecccc
Q 013456          363 KMTCGNGGFPQLRVLKLWVLKELKEWTIE-E------GAMTALEKLEIRNCPKLK--M-PTELTKLSNLKELTLVKKV  430 (442)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l~--~-p~~l~~l~~L~~L~l~~n~  430 (442)
                      .+ ..+..+++|++|++++|. ++.++.. .      ...++|+.|++.+|+...  . |..+..+++++.+++++|+
T Consensus       255 lp-~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          255 VP-GGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CC-TTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CC-hhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            22 236778889999988864 4443321 1      124778889998888764  3 6778888889999988874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=5.1e-26  Score=211.66  Aligned_cols=282  Identities=18%  Similarity=0.196  Sum_probs=195.2

Q ss_pred             eeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCcccccc-chhhhcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~  207 (442)
                      ++++++++++.+..+|..+.  ++|++|++++|.+..++ ..++++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            57777777777777776553  57777777777777663 4577777777777777777754 56677777777777777


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecccc-chhHHhhcCCcccccceeeccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASL-GKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      |.+. .+|..  +.  ++|++|++.++......+..+..+++|+.|++++|.... ...+..+..+ +|+.|++++|...
T Consensus       112 n~l~-~l~~~--~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          112 NHLV-EIPPN--LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             SCCC-SCCSS--CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CcCC-ccCcc--cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            7665 33322  22  677777777776665555567778888888888776541 2344555555 8888888887776


Q ss_pred             cCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456          287 YVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK  363 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  363 (442)
                      ..+...       .++|+.|+++++...   +..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.. .
T Consensus       186 ~l~~~~-------~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l  256 (332)
T 2ft3_A          186 GIPKDL-------PETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-V  256 (332)
T ss_dssp             SCCSSS-------CSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-C
T ss_pred             ccCccc-------cCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-c
Confidence            655432       257788888776322   2334455 789999999999887777788899999999999998863 3


Q ss_pred             cccCCCCCCcccEEEecccCCcceEEeC-C------CccccccEEEeccCCCC--CC-CccCCCCCCCcEEEecccc
Q 013456          364 MTCGNGGFPQLRVLKLWVLKELKEWTIE-E------GAMTALEKLEIRNCPKL--KM-PTELTKLSNLKELTLVKKV  430 (442)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~l~~c~~l--~~-p~~l~~l~~L~~L~l~~n~  430 (442)
                      +. .+..+++|+.|++++|. ++.++.. .      ...++|+.|++.+|+..  .. |..+..+++|+.|++++|+
T Consensus       257 p~-~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          257 PA-GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CT-TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             Ch-hhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            33 36788999999999864 4444321 1      12578999999999877  34 7778899999999999884

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.5e-26  Score=213.06  Aligned_cols=245  Identities=19%  Similarity=0.198  Sum_probs=157.6

Q ss_pred             ceeEEEecCCCCCC---CChhhhhcccccceecccc-cccc-cCCccccccCCCcEEeecCcccc-ccchhhhcccccce
Q 013456          129 RLLRVLDLEDVYKP---VLPETIGKLQLLRYVGLRR-TFID-SIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRH  202 (442)
Q Consensus       129 ~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~  202 (442)
                      .++++|+++++.+.   .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            46888888877765   4778888888888888885 6665 67888888888888888888887 77888888888888


Q ss_pred             eeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCc-ccccceee
Q 013456          203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLT-SLESLRLR  281 (442)
Q Consensus       203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~  281 (442)
                      |++++|.+.+..|.  .++.++                        +|++|++++|.+. +.++..+..++ +|+.|+++
T Consensus       130 L~Ls~N~l~~~~p~--~~~~l~------------------------~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~  182 (313)
T 1ogq_A          130 LDFSYNALSGTLPP--SISSLP------------------------NLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             EECCSSEEESCCCG--GGGGCT------------------------TCCEEECCSSCCE-EECCGGGGCCCTTCCEEECC
T ss_pred             EeCCCCccCCcCCh--HHhcCC------------------------CCCeEECcCCccc-CcCCHHHhhhhhcCcEEECc
Confidence            88888877644432  234444                        4444444444332 33444455554 55666655


Q ss_pred             ccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccC
Q 013456          282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG  361 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  361 (442)
                      +|.......                         ..+..+ . |+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       183 ~N~l~~~~~-------------------------~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          183 RNRLTGKIP-------------------------PTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             SSEEEEECC-------------------------GGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CCeeeccCC-------------------------hHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            554331111                         112222 2 6666666666665566666677777777777776654


Q ss_pred             cccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccc
Q 013456          362 EKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKV  430 (442)
Q Consensus       362 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~  430 (442)
                      ..+.  +..+++|++|++++|.....++.....+++|+.|++++|..... |.. ..+++|+.+++++|+
T Consensus       236 ~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          236 DLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             BGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            3332  55667777777777654435555566677777777777766644 443 667777777777776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.9e-26  Score=212.32  Aligned_cols=231  Identities=21%  Similarity=0.240  Sum_probs=183.4

Q ss_pred             cccceecccccccc---cCCccccccCCCcEEeecC-cccc-ccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456          152 QLLRYVGLRRTFID---SIPKSLGDLHSLETLDMKH-TNIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL  226 (442)
Q Consensus       152 ~~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  226 (442)
                      .++++|+++++.+.   .+|..++++++|++|++++ |.+. .+|..+.++++|++|++++|.+.+..|           
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-----------  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence            57888899988886   5788888899999999985 7776 788888888999999988887764433           


Q ss_pred             ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456          227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL  306 (442)
Q Consensus       227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l  306 (442)
                                     ..+..+++|++|++++|.+. ..++..+..+++|+.|++++|.+....                 
T Consensus       119 ---------------~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~-----------------  165 (313)
T 1ogq_A          119 ---------------DFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRISGAI-----------------  165 (313)
T ss_dssp             ---------------GGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCEEECCSSCCEEEC-----------------
T ss_pred             ---------------HHHhCCCCCCEEeCCCCccC-CcCChHHhcCCCCCeEECcCCcccCcC-----------------
Confidence                           33556677778888877665 567788889999999999998765211                 


Q ss_pred             EeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcc
Q 013456          307 YLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELK  386 (442)
Q Consensus       307 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  386 (442)
                              +..+..++++|+.|++++|.+++..+..++.++ |+.|++++|.+.+..+. .+..+++|+.|++++|....
T Consensus       166 --------p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          166 --------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             --------CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEECC
T ss_pred             --------CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCceee
Confidence                    122444534899999999998888888899887 99999999998765544 48899999999999975433


Q ss_pred             eEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccc-ccCCC
Q 013456          387 EWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLK-MKPED  437 (442)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~-~~p~~  437 (442)
                      ..+ ....+++|++|++++|.+... |..+..+++|++|++++|+++ .+|+.
T Consensus       236 ~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            333 356789999999999998854 999999999999999999997 56553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.4e-24  Score=209.71  Aligned_cols=304  Identities=20%  Similarity=0.197  Sum_probs=201.3

Q ss_pred             CceeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhc
Q 013456           71 LCVCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGK  150 (442)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~  150 (442)
                      ..++.+.+..+.....+    ...++|+.|.+.++....++..              .++|++|++++|.+..+| .+++
T Consensus        91 ~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l~~~--------------~~~L~~L~L~~n~l~~lp-~~~~  151 (454)
T 1jl5_A           91 PHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKALSDL--------------PPLLEYLGVSNNQLEKLP-ELQN  151 (454)
T ss_dssp             TTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCCSC--------------CTTCCEEECCSSCCSSCC-CCTT
T ss_pred             CCCCEEEccCCcCCccc----cccCCCcEEECCCCccCcccCC--------------CCCCCEEECcCCCCCCCc-ccCC
Confidence            45666666555443322    2346777777776654443321              257888888888777777 5788


Q ss_pred             ccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccc
Q 013456          151 LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW  230 (442)
Q Consensus       151 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~  230 (442)
                      +++|++|++++|.+..+|..+   .+|++|++++|.++.+| .++++++|++|++++|.+.+ +|.     ..++|+.|+
T Consensus       152 l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPD-----LPLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCC-----CCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCC-----CcCcccEEE
Confidence            888888888888887777643   47888888888888777 57888888888888887663 222     125778888


Q ss_pred             ccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecc
Q 013456          231 GLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG  310 (442)
Q Consensus       231 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  310 (442)
                      +.++... .++ .++.+++|+.|++++|.+.  .++.   .+++|+.|++++|.....+..        .++|+.+++++
T Consensus       222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~--~l~~---~~~~L~~L~l~~N~l~~l~~~--------~~~L~~L~ls~  286 (454)
T 1jl5_A          222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLK--TLPD---LPPSLEALNVRDNYLTDLPEL--------PQSLTFLDVSE  286 (454)
T ss_dssp             CCSSCCS-SCC-CCTTCTTCCEEECCSSCCS--SCCS---CCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCS
T ss_pred             CcCCcCC-ccc-ccCCCCCCCEEECCCCcCC--cccc---cccccCEEECCCCcccccCcc--------cCcCCEEECcC
Confidence            7777655 344 3778888888888887553  2333   246788888888776654331        36788888887


Q ss_pred             ccCCCcccccCCCceeEEEEeccCCCCCCcccccCC-CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE
Q 013456          311 RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQL-RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT  389 (442)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  389 (442)
                      +..  ..+...|++|+.|++++|.+++     +..+ ++|+.|++++|.+.+ .+    ..+++|+.|++++| .++.++
T Consensus       287 N~l--~~l~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp----~~~~~L~~L~L~~N-~l~~lp  353 (454)
T 1jl5_A          287 NIF--SGLSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LP----ALPPRLERLIASFN-HLAEVP  353 (454)
T ss_dssp             SCC--SEESCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS-CCSCCC
T ss_pred             Ccc--CcccCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cc----ccCCcCCEEECCCC-cccccc
Confidence            742  2233456788999998888764     2234 589999999998875 22    23789999999987 455665


Q ss_pred             eCCCccccccEEEeccCCCCCC---CccCCCC-------------CCCcEEEecccccccc
Q 013456          390 IEEGAMTALEKLEIRNCPKLKM---PTELTKL-------------SNLKELTLVKKVLKMK  434 (442)
Q Consensus       390 ~~~~~~~~L~~L~l~~c~~l~~---p~~l~~l-------------~~L~~L~l~~n~l~~~  434 (442)
                      .   .+++|+.|++++|.....   |.++.++             ++|+.|++++|+++.+
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~  411 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF  411 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence            4   578999999999998873   7788777             8899999999999753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=2.3e-24  Score=200.44  Aligned_cols=263  Identities=18%  Similarity=0.102  Sum_probs=171.1

Q ss_pred             ceeEEEecCCCCCCCCh-hhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          129 RLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      ++|++|++++|.+..++ ..+.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|..+.  ++|++|+++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            45677777766666553 3566677777777777766655 5566677777777777777766666554  667777777


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCC--CchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS--PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN  284 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  284 (442)
                      +|.+....+.  .++.+++|+.|++.++....  ..+..+..+ +|+.|++++|.+.  .++..+.  ++|+.|++++|.
T Consensus       132 ~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~--~l~~~~~--~~L~~L~l~~n~  204 (332)
T 2ft3_A          132 DNRIRKVPKG--VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT--GIPKDLP--ETLNELHLDHNK  204 (332)
T ss_dssp             SSCCCCCCSG--GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS--SCCSSSC--SSCSCCBCCSSC
T ss_pred             CCccCccCHh--HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC--ccCcccc--CCCCEEECCCCc
Confidence            7766532221  35666777777766665532  334445555 6777777766543  3443332  577777777776


Q ss_pred             cccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccC
Q 013456          285 DFYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIG  361 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  361 (442)
                      ....+.    ..+..+++|+.|+++++...   +..+..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus       205 i~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          205 IQAIEL----EDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCCCCT----TSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CCccCH----HHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            654432    23556677777777766321   2234455 79999999999988 667789999999999999998875


Q ss_pred             cccccCCC------CCCcccEEEecccCCc--ceEEeCCCccccccEEEeccCC
Q 013456          362 EKMTCGNG------GFPQLRVLKLWVLKEL--KEWTIEEGAMTALEKLEIRNCP  407 (442)
Q Consensus       362 ~~~~~~~~------~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~c~  407 (442)
                      ..... +.      .+++|+.|++.+|+..  ...+.....+++|+.+++++|.
T Consensus       279 ~~~~~-~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          279 VGVND-FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCTTS-SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cChhH-ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            44332 22      2678999999998743  2334455678999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=4.2e-24  Score=198.55  Aligned_cols=271  Identities=17%  Similarity=0.151  Sum_probs=216.0

Q ss_pred             cccccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCccccc
Q 013456          150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRT  228 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~  228 (442)
                      ...+|++++++++.+..+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+....|.  .++.+++|++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~  104 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG--AFAPLVKLER  104 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--TTTTCTTCCE
T ss_pred             CcCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH--HhcCCCCCCE
Confidence            34589999999999999998764  689999999999998776 689999999999999998765444  5899999999


Q ss_pred             ccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEe
Q 013456          229 LWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYL  308 (442)
Q Consensus       229 L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l  308 (442)
                      |++.++.... ++..+  .++|+.|++++|.+. ...+..+.++++|+.|++++|......  .....+..+++|+.|++
T Consensus       105 L~Ls~n~l~~-l~~~~--~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          105 LYLSKNQLKE-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             EECCSSCCSB-CCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEEC
T ss_pred             EECCCCcCCc-cChhh--cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC--cChhhccCCCCcCEEEC
Confidence            9998887653 33333  279999999999765 555667889999999999998765311  11234677899999999


Q ss_pred             ccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE
Q 013456          309 LGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW  388 (442)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  388 (442)
                      +++..... ...++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++| .+..+
T Consensus       179 ~~n~l~~l-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l  255 (330)
T 1xku_A          179 ADTNITTI-PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNN-KLVKV  255 (330)
T ss_dssp             CSSCCCSC-CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSS-CCSSC
T ss_pred             CCCccccC-CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCC-cCccC
Confidence            98743211 11233799999999999987778889999999999999999875433 23678999999999997 45677


Q ss_pred             EeCCCccccccEEEeccCCCCCC-CccCC------CCCCCcEEEeccccccc
Q 013456          389 TIEEGAMTALEKLEIRNCPKLKM-PTELT------KLSNLKELTLVKKVLKM  433 (442)
Q Consensus       389 ~~~~~~~~~L~~L~l~~c~~l~~-p~~l~------~l~~L~~L~l~~n~l~~  433 (442)
                      +.....+++|+.|++++|.+..+ +..+.      ..+.|+.|++++|++..
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            77778899999999999998887 33332      34789999999999865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=2.9e-24  Score=217.59  Aligned_cols=140  Identities=24%  Similarity=0.153  Sum_probs=114.8

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-ccc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLG  172 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~  172 (442)
                      +.++.|.++++....++...|          .++++|++|+|++|.+..+++ +|.++++|++|+|++|.+..+|. .|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f----------~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSF----------FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTT----------TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             cCCCEEEeeCCCCCCCCHHHH----------hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            478999999888777766544          558999999999999988865 68999999999999999999875 579


Q ss_pred             ccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhc
Q 013456          173 DLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLE  245 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~  245 (442)
                      ++++|++|++++|+++.+|. .++++++|++|++++|.+.. ++.+..++.+++|++|++.++......+..+.
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCcccccccccccc
Confidence            99999999999999998876 48899999999999998764 33344678899999999888776544444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=1.1e-23  Score=203.44  Aligned_cols=301  Identities=20%  Similarity=0.175  Sum_probs=228.7

Q ss_pred             eeEEEEecCCCCCCCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhccc
Q 013456           73 VCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQ  152 (442)
Q Consensus        73 ~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~  152 (442)
                      ++++.+........+    ...++++.|.+.++....+|..              +++|++|++++|.+..++...   +
T Consensus        73 l~~L~l~~~~l~~lp----~~~~~L~~L~l~~n~l~~lp~~--------------~~~L~~L~l~~n~l~~l~~~~---~  131 (454)
T 1jl5_A           73 AHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPEL--------------PQSLKSLLVDNNNLKALSDLP---P  131 (454)
T ss_dssp             CSEEECTTSCCSCCC----SCCTTCSEEECCSSCCSSCCCC--------------CTTCCEEECCSSCCSCCCSCC---T
T ss_pred             CCEEEecCCccccCC----CCcCCCCEEEccCCcCCccccc--------------cCCCcEEECCCCccCcccCCC---C
Confidence            355555544433222    2347899999988876665532              478999999999887776432   6


Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL  232 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~  232 (442)
                      +|++|++++|.+..+| +++++++|++|++++|.++.+|..+   .+|++|++++|.+.+ +|   .++.+++|+.|++.
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~---~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP---ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC---CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc---cccCCCCCCEEECC
Confidence            8999999999999998 5999999999999999999888654   589999999998875 44   48899999999998


Q ss_pred             ccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456          233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       233 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  312 (442)
                      ++...+ ++.   ..++|+.|++++|...  .++ .+..+++|+.|++++|.....+.        ..++|+.|+++++.
T Consensus       204 ~N~l~~-l~~---~~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          204 NNSLKK-LPD---LPLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLLKTLPD--------LPPSLEALNVRDNY  268 (454)
T ss_dssp             SSCCSS-CCC---CCTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSSCCS--------CCTTCCEEECCSSC
T ss_pred             CCcCCc-CCC---CcCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcCCcccc--------cccccCEEECCCCc
Confidence            887654 222   2358999999998654  555 37889999999999988765443        24789999998875


Q ss_pred             CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCC-CcccEEEecccCCcceEEeC
Q 013456          313 PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGF-PQLRVLKLWVLKELKEWTIE  391 (442)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~  391 (442)
                      ..  .+...+++|+.|++++|.+++. +.   -.++|+.|++++|.+.+.      ..+ ++|+.|++++|. +..++. 
T Consensus       269 l~--~l~~~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i------~~~~~~L~~L~Ls~N~-l~~lp~-  334 (454)
T 1jl5_A          269 LT--DLPELPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL------CDLPPSLEELNVSNNK-LIELPA-  334 (454)
T ss_dssp             CS--CCCCCCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE------CCCCTTCCEEECCSSC-CSCCCC-
T ss_pred             cc--ccCcccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc------cCCcCcCCEEECCCCc-cccccc-
Confidence            22  2333458999999999988752 11   126899999999988641      123 599999999964 444443 


Q ss_pred             CCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCC
Q 013456          392 EGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPE  436 (442)
Q Consensus       392 ~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~  436 (442)
                        .+++|+.|++++|....+|.   .+++|++|++++|+++.+|.
T Consensus       335 --~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~  374 (454)
T 1jl5_A          335 --LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPD  374 (454)
T ss_dssp             --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred             --cCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCC
Confidence              37999999999998887776   57899999999999988553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=2.8e-24  Score=201.63  Aligned_cols=256  Identities=16%  Similarity=0.133  Sum_probs=132.9

Q ss_pred             ceeEEEecCCCCCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l  205 (442)
                      ++|++|+++++.+..++. .+.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            356666666655555544 455566666666666655554 33455566666666666666555544 455666666666


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+.. ++..                        ..+..+++|+.|++++|.......+..+..+++|+.|++++|..
T Consensus       132 ~~n~l~~-l~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          132 LGNPYKT-LGET------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             TTCCCSS-SCSS------------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCCcc-cCch------------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            6555442 2211                        12344445555555554211122233445555555555555543


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT  365 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  365 (442)
                      .....                         ..+..+ ++|+.|++++|.++......+..+++|+.|++++|.+.+..+.
T Consensus       187 ~~~~~-------------------------~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          187 QSYEP-------------------------KSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             CEECT-------------------------TTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             CccCH-------------------------HHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            32211                         112222 4555555555554322222233455555555555555432211


Q ss_pred             c--CCCCCCcccEEEecccCCcc----eEEeCCCccccccEEEeccCCCCCCCccC-CCCCCCcEEEeccccccccC
Q 013456          366 C--GNGGFPQLRVLKLWVLKELK----EWTIEEGAMTALEKLEIRNCPKLKMPTEL-TKLSNLKELTLVKKVLKMKP  435 (442)
Q Consensus       366 ~--~~~~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~c~~l~~p~~l-~~l~~L~~L~l~~n~l~~~p  435 (442)
                      .  .....+.++.+.+.++....    .++.....+++|+.|++++|....+|..+ ..+++|++|++++|++..-+
T Consensus       241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            1  12234456666666543211    23333456788888888888777776664 77888888888888876544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=6.6e-24  Score=195.09  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             EEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCcccccc---chhhhcccccceeeeccc
Q 013456          133 VLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSL---PKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       133 ~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~  208 (442)
                      .++++++.+..+|..+.  ++|++|++++|.+..+|.. ++++++|++|++++|.++.+   |..+..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            45555555556655432  4566666666666666543 45666666666666665533   455555666666666666


Q ss_pred             ccc
Q 013456          209 HLQ  211 (442)
Q Consensus       209 ~~~  211 (442)
                      .+.
T Consensus        89 ~i~   91 (306)
T 2z66_A           89 GVI   91 (306)
T ss_dssp             SEE
T ss_pred             ccc
Confidence            544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=6.5e-23  Score=204.17  Aligned_cols=260  Identities=18%  Similarity=0.119  Sum_probs=207.5

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      .++++|+++++.+..+|..+.  ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            468999999999999988775  799999999999999887   57899999999999998887   7799999999999


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .+.. +|.     .+++|+.|++.++.... ++.   .+++|++|++++|.+.  .++.   .+.+|+.|++++|.+...
T Consensus       112 ~l~~-l~~-----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~--~l~~---~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          112 PLTH-LPA-----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA--SLPA---LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             CCCC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSCC
T ss_pred             cCCC-CCC-----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC--CcCC---ccCCCCEEECCCCCCCCC
Confidence            8764 232     56788888888776544 332   3589999999988653  3333   357899999999887765


Q ss_pred             CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456          289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN  368 (442)
Q Consensus       289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  368 (442)
                      +        ..+++|+.|+++++...  .+...+++|+.|++++|.++. ++.   .+++|+.|++++|.+.+. +    
T Consensus       177 ~--------~~~~~L~~L~Ls~N~l~--~l~~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p----  237 (622)
T 3g06_A          177 P--------MLPSGLQELSVSDNQLA--SLPTLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P----  237 (622)
T ss_dssp             C--------CCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C----
T ss_pred             c--------ccCCCCcEEECCCCCCC--CCCCccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C----
Confidence            5        23688999999987532  233345899999999998874 332   358999999999988752 2    


Q ss_pred             CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccccc
Q 013456          369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                      ..+++|+.|++++| .++.++.   .+++|+.|++++|.+..+|..+.++++|+.|+|++|+++..
T Consensus       238 ~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          238 VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence            46799999999997 5566654   67999999999999888899999999999999999998654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-23  Score=192.35  Aligned_cols=227  Identities=20%  Similarity=0.148  Sum_probs=151.5

Q ss_pred             ceeEEEecCCCCCCCChhh-hhcccccceecccccccccC---CccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456          129 RLLRVLDLEDVYKPVLPET-IGKLQLLRYVGLRRTFIDSI---PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY  204 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  204 (442)
                      ++|++|+++++.+..+|.. +.++++|++|++++|.+..+   |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            5688888888888888764 67888889999888887654   5667778889999998888888888888888899999


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN  284 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  284 (442)
                      +++|.+....+ ...+..+++|+.|++.++......+..+..+++|+.|++++|.+.....+..+..+++|+.|++++|.
T Consensus       108 l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            88887764332 12466777777777776665555555566777777777776655422355556666677777776665


Q ss_pred             cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456          285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM  364 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  364 (442)
                      ....+.                         ..+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus       187 l~~~~~-------------------------~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          187 LEQLSP-------------------------TAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CCEECT-------------------------TTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             cCCcCH-------------------------HHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            433211                         112222 556666666666655444456666666666666666654433


Q ss_pred             ccCCCCCC-cccEEEecccC
Q 013456          365 TCGNGGFP-QLRVLKLWVLK  383 (442)
Q Consensus       365 ~~~~~~~~-~L~~L~l~~~~  383 (442)
                      .. +..++ +|+.|++++|+
T Consensus       241 ~~-~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          241 QE-LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SS-CCCCCTTCCEEECTTCC
T ss_pred             HH-HHhhhccCCEEEccCCC
Confidence            32 44443 66666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.7e-24  Score=198.01  Aligned_cols=253  Identities=17%  Similarity=0.177  Sum_probs=147.6

Q ss_pred             cccccceecccccccccCCccccccCCCcEEeecCcccc--ccchhhh-------cccccceeeeccccccccccCCCCC
Q 013456          150 KLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT--SLPKSIW-------KVKTLRHLYLNDIHLQMSVQKPFVK  220 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~~~~  220 (442)
                      ..++|++|++++|.+ .+|..+...  |++|++++|.+.  .+|..+.       ++++|++|++++|.+.+..|....+
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            344444444444444 444443322  444444444443  2333333       3445555555555444333332111


Q ss_pred             CCCcccccccccccCCCCCchhhhccc-----cCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCcccccc
Q 013456          221 PSLTNLRTLWGLSIGKKSPPLNWLENL-----SDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIG  295 (442)
Q Consensus       221 ~~l~~L~~L~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  295 (442)
                      +.+++|++|++.++...+. +..++.+     ++|++|++++|.+. ...+..+..+++|+.|++++|.........  .
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~  193 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLI--S  193 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHH--H
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHH--H
Confidence            4444444444444443332 3334444     67777777777554 334456666777777777766532210000  0


Q ss_pred             ccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCC---CcccccCCCCCcEEEeCcccccCcccccCCCCCC
Q 013456          296 SLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSED---PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFP  372 (442)
Q Consensus       296 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (442)
                      .+                   .+..+ ++|+.|++++|.++..   ....+..+++|+.|++++|.+.+..+...+..++
T Consensus       194 ~~-------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          194 AL-------------------CPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             HS-------------------CTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             HH-------------------HhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            00                   01223 6778888888877631   1233457789999999999887755444466688


Q ss_pred             cccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccc
Q 013456          373 QLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       373 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      +|++|++++|. ++.++....  ++|+.|++++|.+...|. +..+++|++|++++|+++.
T Consensus       254 ~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            99999999864 446655443  899999999998888876 8899999999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=5.1e-23  Score=190.59  Aligned_cols=221  Identities=18%  Similarity=0.139  Sum_probs=149.1

Q ss_pred             cccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccc
Q 013456           94 FEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGD  173 (442)
Q Consensus        94 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~  173 (442)
                      ..+++.|.+.++....+|..           +.++++|++|++++|.+..+|..++++++|++|++++|.+..+|..+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~-----------l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~  148 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQ-----------AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS  148 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSC-----------GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred             ccceeEEEccCCCchhcChh-----------hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence            37889999998877766653           2447999999999999889999999999999999999999999999999


Q ss_pred             cCCCcEEeecCcccc-ccchhhhc---------ccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhh
Q 013456          174 LHSLETLDMKHTNIT-SLPKSIWK---------VKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNW  243 (442)
Q Consensus       174 l~~L~~L~L~~~~l~-~lp~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~  243 (442)
                      +++|++|++++|++. .+|..+..         +++|++|++++|.+. .+                          +..
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l--------------------------p~~  201 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL--------------------------PAS  201 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC--------------------------CGG
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc--------------------------hHh
Confidence            999999999998654 78877654         777777777776554 22                          233


Q ss_pred             hccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCC
Q 013456          244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP  323 (442)
Q Consensus       244 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  323 (442)
                      ++.+++|+.|++++|.+.  .++..+..+++|+.|++++|........                         .+..+ +
T Consensus       202 l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-------------------------~~~~l-~  253 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPP-------------------------IFGGR-A  253 (328)
T ss_dssp             GGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCC-------------------------CTTCC-C
T ss_pred             hcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHH-------------------------HhcCC-C
Confidence            455556666666665442  3444566666677777666554332111                         12222 4


Q ss_pred             ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456          324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV  381 (442)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  381 (442)
                      +|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+.. +..+++|+.+.+..
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPP  310 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCG
T ss_pred             CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCH
Confidence            5555555555555555555555666666666665555544433 55555555555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.89  E-value=3.7e-26  Score=222.57  Aligned_cols=336  Identities=16%  Similarity=0.087  Sum_probs=181.9

Q ss_pred             ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhh-hccc----ccceeccccccc
Q 013456           91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETI-GKLQ----LLRYVGLRRTFI  164 (442)
Q Consensus        91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l-~~l~----~L~~L~L~~~~i  164 (442)
                      +..+++++.|.+.++....   ..+..+ .  ..+..+++|++|++++|.+... +..+ ..++    +|++|++++|.+
T Consensus        24 ~~~~~~L~~L~L~~~~l~~---~~~~~l-~--~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   97 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTE---ARCKDI-S--SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   97 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCH---HHHHHH-H--HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             HhhcCCccEEEccCCCCCH---HHHHHH-H--HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence            4456777777777654221   111111 1  1234567777777777765442 2222 2344    577777777776


Q ss_pred             c-----cCCccccccCCCcEEeecCccccc-cchhhh-----cccccceeeecccccccccc--CCCCCCCCcccccccc
Q 013456          165 D-----SIPKSLGDLHSLETLDMKHTNITS-LPKSIW-----KVKTLRHLYLNDIHLQMSVQ--KPFVKPSLTNLRTLWG  231 (442)
Q Consensus       165 ~-----~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~-----~l~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~~  231 (442)
                      +     .+|..+.++++|++|++++|.+.. .+..+.     ..++|++|++++|.+.....  .+..+..+++|++|++
T Consensus        98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  177 (461)
T 1z7x_W           98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  177 (461)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence            5     346666777777777777777652 222222     23467777777776654221  0112445667777777


Q ss_pred             cccCCCCCchhhhc-----cccCcceeeEEeeccccc---hhHHhhcCCcccccceeeccccccCCcc-ccccccCCcCC
Q 013456          232 LSIGKKSPPLNWLE-----NLSDLKNLGLICNIASLG---KITNLIQGLTSLESLRLRSINDFYVPSD-LAIGSLNNHKE  302 (442)
Q Consensus       232 ~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~  302 (442)
                      .++......+..+.     ..++|+.|++++|.+...   .++..+..+++|+.|++++|........ ........+++
T Consensus       178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~  257 (461)
T 1z7x_W          178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR  257 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence            66654332222222     244777777776655422   2455566667777777777654321100 00011223567


Q ss_pred             CceEEeccccCCC-------cccccCCCceeEEEEeccCCCCCCcccccC-----CCCCcEEEeCcccccCccc---ccC
Q 013456          303 LKELYLLGRLPGP-------LKLHELPPNLRIFTLSLSYLSEDPMPVLGQ-----LRELKALRLFAHSYIGEKM---TCG  367 (442)
Q Consensus       303 L~~l~l~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~---~~~  367 (442)
                      |++|+++++....       ..+... ++|++|++++|.+++..+..+..     .++|+.|++++|.+.+...   ...
T Consensus       258 L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  336 (461)
T 1z7x_W          258 LRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  336 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence            7777776663221       111123 56777777777665432222222     2577777777776654321   112


Q ss_pred             CCCCCcccEEEecccCCcceEEeCC-----CccccccEEEeccCCCCC-----CCccCCCCCCCcEEEeccccccc
Q 013456          368 NGGFPQLRVLKLWVLKELKEWTIEE-----GAMTALEKLEIRNCPKLK-----MPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       368 ~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~L~~L~l~~c~~l~-----~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      +..+++|++|++++|..-.......     ...++|+.|++++|.+..     +|..+..+++|++|++++|+++.
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3456777777777763221111100     125677777777776663     26666677777777777777643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=5.7e-23  Score=192.74  Aligned_cols=253  Identities=16%  Similarity=0.117  Sum_probs=190.0

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCcc-cc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKS-LG  172 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~-~~  172 (442)
                      ++++.|.+.++....++...          +.++++|++|++++|.+..++ ..++++++|++|++++|.+..+|.. ++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  121 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSD----------LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK  121 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred             ccCcEEECCCCcCcccCHHH----------hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence            58899998888766555432          356899999999999888774 5799999999999999999999876 88


Q ss_pred             ccCCCcEEeecCccccccch--hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc
Q 013456          173 DLHSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL  250 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L  250 (442)
                      ++++|++|++++|.++.+|.  .+..+++|++|++++|.....++.. .++.+++|+.|++.++......+..+..+++|
T Consensus       122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            99999999999999998887  6889999999999998533344322 58889999999998888777677888899999


Q ss_pred             ceeeEEeeccccchhHHh-hcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEE
Q 013456          251 KNLGLICNIASLGKITNL-IQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFT  329 (442)
Q Consensus       251 ~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~  329 (442)
                      ++|++++|..  ..++.. +..+++|+.|++++|.....+... +..                      ......++.++
T Consensus       201 ~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~----------------------~~~~~~l~~l~  255 (353)
T 2z80_A          201 SHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSE-LST----------------------GETNSLIKKFT  255 (353)
T ss_dssp             EEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------------CCCCCCEEE
T ss_pred             CeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccc-ccc----------------------ccccchhhccc
Confidence            9999998865  344443 445789999999988765432210 000                      11124566677


Q ss_pred             EeccCCCC----CCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCC
Q 013456          330 LSLSYLSE----DPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKE  384 (442)
Q Consensus       330 l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (442)
                      ++.+.+.+    .++..+..+++|+.|++++|.+.. .+...+..+++|++|++++|+.
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCc
Confidence            77766654    245567778888888888887763 3333356788888888888753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=1.8e-22  Score=195.78  Aligned_cols=221  Identities=22%  Similarity=0.166  Sum_probs=118.8

Q ss_pred             ceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l  205 (442)
                      +++++|++++|.+..+ +..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            4566666666655554 335566666666666666665553 4455666666666666666655443 455666666666


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+... +.. .+..+++|+.|++..+.....++                        ...+..+++|+.|++++|.+
T Consensus       155 ~~N~l~~~-~~~-~~~~l~~L~~L~l~~~~~l~~i~------------------------~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          155 RNNPIESI-PSY-AFNRVPSLMRLDLGELKKLEYIS------------------------EGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CSCCCCEE-CTT-TTTTCTTCCEEECCCCTTCCEEC------------------------TTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCccee-CHh-HHhcCCcccEEeCCCCCCccccC------------------------hhhccCCCCCCEEECCCCcc
Confidence            66655422 211 34445555555444332222111                        12344455555555555444


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE  362 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  362 (442)
                      ...+      .+..+++|+.|+++++...   +..+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus       209 ~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          209 KDMP------NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             SSCC------CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cccc------cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence            3322      1233444444444443211   2223334 5777777777777666666677777777777777776543


Q ss_pred             ccccCCCCCCcccEEEecccC
Q 013456          363 KMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~  383 (442)
                       +...+..+++|+.|++++|+
T Consensus       282 -~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          282 -PHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             -CTTSSTTCTTCCEEECCSSC
T ss_pred             -ChHHhccccCCCEEEccCCC
Confidence             22335667777777777764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=195.10  Aligned_cols=221  Identities=20%  Similarity=0.214  Sum_probs=124.0

Q ss_pred             ceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccch-hhhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l  205 (442)
                      +++++|+|++|.+..++ ..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            44566666666555543 35556666666666666655553 345566666666666666665544 3555666666666


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+....+.  .+..+++|+.|++..+......                        .+..+.++++|+.|++++|.+
T Consensus       144 ~~N~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i------------------------~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          144 RNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYI------------------------SEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEE------------------------CTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCcccccCHH--HhhhCcccCEeCCCCCCCccee------------------------CcchhhcccccCeecCCCCcC
Confidence            66655422211  3444455554444433222211                        122344455555555555544


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGE  362 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  362 (442)
                      ...+      .+..+++|+.|+++++...   +..+..+ ++|+.|++++|.++...+..+..+++|+.|+|++|.+...
T Consensus       198 ~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          198 REIP------NLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             SSCC------CCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             cccc------ccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            3322      1334445555555444211   2233444 6788888888887766667778888888888888877643


Q ss_pred             ccccCCCCCCcccEEEecccC
Q 013456          363 KMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~  383 (442)
                      . ...+..+++|+.|++++|+
T Consensus       271 ~-~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          271 P-HDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             C-TTTTSSCTTCCEEECCSSC
T ss_pred             C-hhHhccccCCCEEEcCCCC
Confidence            3 3336677888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=1.8e-25  Score=217.73  Aligned_cols=328  Identities=18%  Similarity=0.087  Sum_probs=231.0

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-----CChhhhhcccccceecccccccccC-C
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-----VLPETIGKLQLLRYVGLRRTFIDSI-P  168 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~i~~l-p  168 (442)
                      ++++.|.+.++...   ...+..+      +..+++|++|++++|.+.     .++..+..+++|++|++++|.+... +
T Consensus         3 ~~l~~L~Ls~~~l~---~~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~   73 (461)
T 1z7x_W            3 LDIQSLDIQCEELS---DARWAEL------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV   73 (461)
T ss_dssp             EEEEEEEEESCCCC---HHHHHHH------HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred             ccceehhhhhcccC---chhHHHH------HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence            56777888765422   1112222      356899999999999887     4577788899999999999988653 3


Q ss_pred             ccc-cccC----CCcEEeecCcccc-----ccchhhhcccccceeeeccccccccccCC---CCCCCCcccccccccccC
Q 013456          169 KSL-GDLH----SLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMSVQKP---FVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       169 ~~~-~~l~----~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~---~~~~~l~~L~~L~~~~~~  235 (442)
                      ..+ ..++    +|++|++++|.++     .+|..+..+++|++|++++|.+....+..   ......++|++|++.++.
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence            333 3455    7999999999888     46888899999999999999876432210   012335689999999887


Q ss_pred             CCCC----chhhhccccCcceeeEEeeccccchhHHhhc-----CCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456          236 KKSP----PLNWLENLSDLKNLGLICNIASLGKITNLIQ-----GLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL  306 (442)
Q Consensus       236 ~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l  306 (442)
                      ....    ++..+..+++|++|++++|.+. ...+..+.     ..++|+.|++++|.............+..+++|++|
T Consensus       154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  232 (461)
T 1z7x_W          154 LSAASCEPLASVLRAKPDFKELTVSNNDIN-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL  232 (461)
T ss_dssp             CBGGGHHHHHHHHHHCTTCCEEECCSSBCH-HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred             CCHHHHHHHHHHHhhCCCCCEEECcCCCcc-hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence            6653    3556777899999999998765 32222222     356999999999876543211112335567899999


Q ss_pred             EeccccCCC-------cccccCCCceeEEEEeccCCCCC----CcccccCCCCCcEEEeCcccccCccccc----CCCCC
Q 013456          307 YLLGRLPGP-------LKLHELPPNLRIFTLSLSYLSED----PMPVLGQLRELKALRLFAHSYIGEKMTC----GNGGF  371 (442)
Q Consensus       307 ~l~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~  371 (442)
                      +++++....       ..+..-.++|++|++++|.++..    ++..+..+++|+.|++++|.+.+.....    .....
T Consensus       233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  312 (461)
T 1z7x_W          233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG  312 (461)
T ss_dssp             ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred             eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence            999874221       11111237999999999998753    4666778999999999999876543221    12345


Q ss_pred             CcccEEEecccCCcce----EEeCCCccccccEEEeccCCCCCC-CccC----CC-CCCCcEEEecccccc
Q 013456          372 PQLRVLKLWVLKELKE----WTIEEGAMTALEKLEIRNCPKLKM-PTEL----TK-LSNLKELTLVKKVLK  432 (442)
Q Consensus       372 ~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~c~~l~~-p~~l----~~-l~~L~~L~l~~n~l~  432 (442)
                      ++|++|++++|.....    ++.....+++|+.|++++|.+... +..+    .. .++|++|++++|.++
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            7999999999864322    233334579999999999976654 3323    22 679999999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=3.9e-22  Score=193.35  Aligned_cols=247  Identities=20%  Similarity=0.194  Sum_probs=163.5

Q ss_pred             eeEEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccc-hhhhcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~  207 (442)
                      ..+.++.++..+..+|..+.  ++|++|+|++|.+..+ |..++++++|++|+|++|.++.++ ..+.++++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            34677777777777776554  5788888888887766 556778888888888888877554 5677788888888887


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      |.+... +                         +..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|+...
T Consensus       133 n~l~~~-~-------------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~  185 (452)
T 3zyi_A          133 NWLTVI-P-------------------------SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE  185 (452)
T ss_dssp             SCCSBC-C-------------------------TTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             CcCCcc-C-------------------------hhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCcc
Confidence            766532 2                         112334445555555555432 2223345666777777776643322


Q ss_pred             -CCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456          288 -VPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC  366 (442)
Q Consensus       288 -~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  366 (442)
                       .+.                         ..+..+ ++|+.|++++|.+++.  +.+..+++|+.|++++|.+.+..+. 
T Consensus       186 ~i~~-------------------------~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-  236 (452)
T 3zyi_A          186 YISE-------------------------GAFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPG-  236 (452)
T ss_dssp             EECT-------------------------TTTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGG-
T ss_pred             ccCh-------------------------hhccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcc-
Confidence             111                         112233 6777777777777643  3577788888888888887654433 


Q ss_pred             CCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456          367 GNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       367 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                      .+..+++|+.|++++|......+.....+++|+.|++++|.+... +..+..+++|++|+|++|++.+-
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            377788888888888654333344556788888888888887777 45567788899999998887554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=3e-23  Score=188.62  Aligned_cols=221  Identities=19%  Similarity=0.122  Sum_probs=122.9

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCcccccc-chhhhcccccceeeecccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIH  209 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~  209 (442)
                      ++++++++.+..+|..+  .++|++|++++|.+..+| ..++++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            45666666666665543  346666666666666554 3456666666666666666644 4556666666666666665


Q ss_pred             ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCC
Q 013456          210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVP  289 (442)
Q Consensus       210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  289 (442)
                      ....++. ..+..+++|++|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+...+
T Consensus        92 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           92 QLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CccccCH-HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence            2222221 13555666666666655555444555666666666666666443 222334556666666666665544322


Q ss_pred             ccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCC
Q 013456          290 SDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNG  369 (442)
Q Consensus       290 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  369 (442)
                      ..                         .+..+ ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+.
T Consensus       170 ~~-------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~  222 (285)
T 1ozn_A          170 ER-------------------------AFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALA  222 (285)
T ss_dssp             TT-------------------------TTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHT
T ss_pred             HH-------------------------HhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-Hcc
Confidence            21                         11222 4555666666655554455566666666666666655543222 245


Q ss_pred             CCCcccEEEecccC
Q 013456          370 GFPQLRVLKLWVLK  383 (442)
Q Consensus       370 ~~~~L~~L~l~~~~  383 (442)
                      .+++|+.|++++|+
T Consensus       223 ~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          223 PLRALQYLRLNDNP  236 (285)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cCcccCEEeccCCC
Confidence            56666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=6.5e-22  Score=191.12  Aligned_cols=247  Identities=20%  Similarity=0.165  Sum_probs=164.4

Q ss_pred             eeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccc-hhhhcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~  207 (442)
                      ..+.++.++..+..+|..+.  +++++|+|++|.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|++++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            35677777777888887664  57888888888887764 56788888888888888887654 5677788888888888


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      |.+... +.                         ..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|+...
T Consensus       122 n~l~~~-~~-------------------------~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~  174 (440)
T 3zyj_A          122 NRLTTI-PN-------------------------GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS  174 (440)
T ss_dssp             SCCSSC-CT-------------------------TTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             CcCCee-CH-------------------------hHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcc
Confidence            766522 21                         12334445555555555433 2223345667777777777644322


Q ss_pred             CCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccC
Q 013456          288 VPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCG  367 (442)
Q Consensus       288 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  367 (442)
                      ...                        ...+..+ ++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+..+ ..
T Consensus       175 ~i~------------------------~~~~~~l-~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~  226 (440)
T 3zyj_A          175 YIS------------------------EGAFEGL-SNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRP-GS  226 (440)
T ss_dssp             EEC------------------------TTTTTTC-SSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECT-TT
T ss_pred             eeC------------------------cchhhcc-cccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccCh-hh
Confidence            111                        0112223 667777777777663 22 46778888888888887765433 34


Q ss_pred             CCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccc
Q 013456          368 NGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       368 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      +..+++|+.|++++|......+.....+++|+.|++++|.+..+ +..+..+++|+.|+|++|++.+
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            77888888888888643333334456788888889888888777 5556788889999998888754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=2.6e-23  Score=191.86  Aligned_cols=243  Identities=13%  Similarity=0.010  Sum_probs=176.3

Q ss_pred             hcCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456          126 RGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY  204 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  204 (442)
                      ..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. ++.+++|++|++++|.++.++.    .++|++|+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~  105 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence            45789999999999887775 578999999999999999887765 8899999999999999887763    48999999


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhh-cCCcccccceeecc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLI-QGLTSLESLRLRSI  283 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~  283 (442)
                      +++|.+....+     ..+++|+.|++.++......+..++.+++|+.|++++|.+. ...+..+ ..+++|+.|++++|
T Consensus       106 l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          106 AANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             CCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCCCccCCcCc-----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCCEEECCCC
Confidence            99998875432     24677888888888776666667777888888888887665 3233333 35678888888777


Q ss_pred             ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcc
Q 013456          284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEK  363 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  363 (442)
                      .+...+..                           .. +++|+.|++++|.+++ .+..+..+++|+.|++++|.+.. .
T Consensus       180 ~l~~~~~~---------------------------~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l  229 (317)
T 3o53_A          180 FIYDVKGQ---------------------------VV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-I  229 (317)
T ss_dssp             CCCEEECC---------------------------CC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred             cCcccccc---------------------------cc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-h
Confidence            65433211                           11 2677888888887774 34457778888888888887763 2


Q ss_pred             cccCCCCCCcccEEEecccCCc-ceEEeCCCccccccEEEeccCCCCC
Q 013456          364 MTCGNGGFPQLRVLKLWVLKEL-KEWTIEEGAMTALEKLEIRNCPKLK  410 (442)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~c~~l~  410 (442)
                      + ..+..+++|+.|++++|+.. ..++.....+++|+.+++.+|..++
T Consensus       230 ~-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          230 E-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             C-TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             h-hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            2 23677788888888887654 2344444567778888777665443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=1.5e-23  Score=193.40  Aligned_cols=258  Identities=14%  Similarity=0.016  Sum_probs=159.4

Q ss_pred             ceeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      ..++.++++++.+...+. .+..+++|++|++++|.+..++ ..++++++|++|++++|.++..+. +..+++|++|+++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            457788888776655544 3456789999999999998885 578999999999999999986665 8899999999999


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      +|.+.+.       ...++|+.|++.++......+   ..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus        89 ~n~l~~l-------~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           89 NNYVQEL-------LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             SSEEEEE-------EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CCccccc-------cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCC
Confidence            9987632       233667777666655433221   22445555555555443 222333444455555555554433


Q ss_pred             cCCccccccccCCcCCCceEEeccccCCCcccc-cCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456          287 YVPSDLAIGSLNNHKELKELYLLGRLPGPLKLH-ELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT  365 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  365 (442)
                      ..+.                         ..+. .+ ++|+.|++++|.++..  +....+++|+.|++++|.+.+.. .
T Consensus       158 ~~~~-------------------------~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~  208 (317)
T 3o53_A          158 TVNF-------------------------AELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-P  208 (317)
T ss_dssp             EEEG-------------------------GGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-G
T ss_pred             cccH-------------------------HHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcch-h
Confidence            2111                         0111 12 5666666666665532  22234666777777776665322 2


Q ss_pred             cCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCC-CC-CccCCCCCCCcEEEeccc
Q 013456          366 CGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKL-KM-PTELTKLSNLKELTLVKK  429 (442)
Q Consensus       366 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~-p~~l~~l~~L~~L~l~~n  429 (442)
                      . +..+++|+.|++++| .++.++.....+++|+.|++++|+.. .. |..+..+++|+.|++++|
T Consensus       209 ~-~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          209 E-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             G-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             h-hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            1 555666777777665 34455555556666777777766665 22 555666666666666643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=1.2e-22  Score=186.91  Aligned_cols=247  Identities=17%  Similarity=0.141  Sum_probs=159.6

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccc--cCCcccc-------ccCCCcEEeecCcccc-ccchhh--h
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFID--SIPKSLG-------DLHSLETLDMKHTNIT-SLPKSI--W  195 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~--~lp~~~~-------~l~~L~~L~L~~~~l~-~lp~~i--~  195 (442)
                      .++|+.|+++++.+ .+|..+...  |++|++++|.+.  .+|..+.       ++++|++|++++|.++ .+|..+  .
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            46677777777766 666665554  777777777664  3455444       5777777777777776 566655  6


Q ss_pred             cccccceeeeccccccccccCCCCCCCC-----cccccccccccCCCCCchhhhccccCcceeeEEeeccccch--hHHh
Q 013456          196 KVKTLRHLYLNDIHLQMSVQKPFVKPSL-----TNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGK--ITNL  268 (442)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~  268 (442)
                      .+++|++|++++|.+.+. |.  .++.+     ++|++|++.++......+..++.+++|+.|++++|... +.  .+..
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~  194 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISA  194 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHH
T ss_pred             cCCCccEEEccCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHH
Confidence            777777777777776644 32  34444     67777777777766666677778888888888887643 22  3444


Q ss_pred             h--cCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCc-ccccC
Q 013456          269 I--QGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPM-PVLGQ  345 (442)
Q Consensus       269 l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~  345 (442)
                      +  ..+++|+.|++++|.+...+... .                     ..+..+ ++|+.|++++|.+++..+ ..+..
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~---------------------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVC-S---------------------ALAAAR-VQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHH-H---------------------HHHHTT-CCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHH-H---------------------HHHhcC-CCCCEEECCCCcCCcccchhhhhh
Confidence            4  67788888888887654221100 0                     001122 577777777777765442 44556


Q ss_pred             CCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCC
Q 013456          346 LRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK  410 (442)
Q Consensus       346 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  410 (442)
                      +++|+.|++++|.+. ..+.. +.  ++|++|++++| .++.++. ...+++|+.|++++|+...
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~-~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKG-LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSS-CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhh-cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            778888888888776 23322 22  77888888876 4455544 6677888888888887553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=2.6e-20  Score=185.44  Aligned_cols=239  Identities=18%  Similarity=0.102  Sum_probs=141.1

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      ++|++|++++|.+..+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|+.|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            455666666555555554   34556666666665555554   44556666666665555554   3455666666655


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .+.. +|.     .+++|+.|++..+.... ++.   .+++|+.|++++|.+.  .++   ..+++|+.|++++|.+...
T Consensus       132 ~l~~-lp~-----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~--~l~---~~~~~L~~L~Ls~N~l~~l  196 (622)
T 3g06_A          132 QLTS-LPV-----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT--SLP---MLPSGLQELSVSDNQLASL  196 (622)
T ss_dssp             CCSC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCC
T ss_pred             CCCc-CCC-----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC--CCc---ccCCCCcEEECCCCCCCCC
Confidence            5442 221     13555555555554332 111   2345666666666443  233   3456677777777665543


Q ss_pred             CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCC
Q 013456          289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGN  368 (442)
Q Consensus       289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  368 (442)
                      +.        ..++|+.|.+.++...  .+...+++|+.|++++|.+++ ++   ..+++|+.|++++|.+.. .+.   
T Consensus       197 ~~--------~~~~L~~L~L~~N~l~--~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---  258 (622)
T 3g06_A          197 PT--------LPSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---  258 (622)
T ss_dssp             CC--------CCTTCCEEECCSSCCS--SCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---
T ss_pred             CC--------ccchhhEEECcCCccc--ccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---
Confidence            32        1356777777665321  122234678888888887774 33   456788888888887763 221   


Q ss_pred             CCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCC
Q 013456          369 GGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKM  411 (442)
Q Consensus       369 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  411 (442)
                       .+++|+.|++++| .++.++.....+++|+.|++++|+....
T Consensus       259 -~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          259 -LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             -CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             -ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCc
Confidence             5678888888886 4556666667788888888888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=6.1e-22  Score=193.16  Aligned_cols=236  Identities=13%  Similarity=-0.002  Sum_probs=172.8

Q ss_pred             cCceeEEEecCCCCCCCCh-hhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          127 GYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      .+++|++|++++|.+..++ ..++.+++|++|+|++|.+..+++ ++.+++|++|++++|.++.+|.    .++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            4668999999999888775 589999999999999999887665 8999999999999999987764    389999999


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhc-CCcccccceeeccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQ-GLTSLESLRLRSIN  284 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~  284 (442)
                      ++|.+.+..+     ..+++|+.|++.++...+..+..++.+++|+.|++++|.+. ...+..+. .+++|+.|++++|.
T Consensus       107 ~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          107 ANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSC
T ss_pred             cCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCcccEEecCCCc
Confidence            9998875433     24678888888888877766777888888888888888665 33455454 67888888888876


Q ss_pred             cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccc
Q 013456          285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKM  364 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  364 (442)
                      +...+..                           .. +++|+.|++++|.+++ .++.+..+++|+.|++++|.+.+ .+
T Consensus       181 l~~~~~~---------------------------~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp  230 (487)
T 3oja_A          181 IYDVKGQ---------------------------VV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IE  230 (487)
T ss_dssp             CCEEECC---------------------------CC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred             ccccccc---------------------------cc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cc
Confidence            5433211                           11 2677777777777764 34457777888888888877764 22


Q ss_pred             ccCCCCCCcccEEEecccCCc-ceEEeCCCccccccEEEec
Q 013456          365 TCGNGGFPQLRVLKLWVLKEL-KEWTIEEGAMTALEKLEIR  404 (442)
Q Consensus       365 ~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~  404 (442)
                       ..+..+++|+.|++++|+.. ..++.....++.|+.+++.
T Consensus       231 -~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             -TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             -hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence             23666777888888776544 1333344556666666664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=6.2e-21  Score=173.30  Aligned_cols=223  Identities=17%  Similarity=0.107  Sum_probs=130.4

Q ss_pred             ceecccccccccCCccccccCCCcEEeecCccccccc-hhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456          155 RYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS  233 (442)
Q Consensus       155 ~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~  233 (442)
                      +.++.+++.+..+|..+  .++|++|++++|.++.++ ..+..+++|++|++++|.+....+.  .+..+++|++|++.+
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh--hcCCccCCCEEeCCC
Confidence            57788888888888655  478999999999999776 4588899999999999877644332  356666666666555


Q ss_pred             cC-CCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456          234 IG-KKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       234 ~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  312 (442)
                      +. .....+..+.                         .+++|+.|++++|.....+..                     
T Consensus        90 n~~l~~~~~~~~~-------------------------~l~~L~~L~l~~n~l~~~~~~---------------------  123 (285)
T 1ozn_A           90 NAQLRSVDPATFH-------------------------GLGRLHTLHLDRCGLQELGPG---------------------  123 (285)
T ss_dssp             CTTCCCCCTTTTT-------------------------TCTTCCEEECTTSCCCCCCTT---------------------
T ss_pred             CCCccccCHHHhc-------------------------CCcCCCEEECCCCcCCEECHh---------------------
Confidence            54 2222233344                         444455555544433221111                     


Q ss_pred             CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCC
Q 013456          313 PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEE  392 (442)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  392 (442)
                          .+..+ ++|+.|++++|.++...+..++.+++|+.|++++|.+.+. +...+..+++|++|++++|......+...
T Consensus       124 ----~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          124 ----LFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             ----TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ----HhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCcccccCHhHc
Confidence                11122 4555555555555544444455566666666666655432 22224556666666666654322223444


Q ss_pred             CccccccEEEeccCCCCCCC-ccCCCCCCCcEEEeccccccc
Q 013456          393 GAMTALEKLEIRNCPKLKMP-TELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       393 ~~~~~L~~L~l~~c~~l~~p-~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      ..+++|+.|++++|.....| ..+..+++|++|++++|++..
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            55666666666666665553 345666666666666666643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=2.9e-22  Score=201.25  Aligned_cols=352  Identities=14%  Similarity=0.063  Sum_probs=193.9

Q ss_pred             CceeEEEEecCCCCCCCCCCccc-ccc-ceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCC-----
Q 013456           71 LCVCRLAEHLDNLSSITPSDKKQ-FEY-LHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPV-----  143 (442)
Q Consensus        71 ~~~~~l~~~~~~~~~~~~~~~~~-~~~-lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----  143 (442)
                      ..++.+.+............... +++ |+.|.+.++..  .....+..+      ...+++|++|++++|.+..     
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~~------~~~~~~L~~L~L~~~~~~~~~~~~  183 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLSI------VTHCRKIKTLLMEESSFSEKDGKW  183 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHHH------HHHCTTCSEEECTTCEEECCCSHH
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHHH------HhhCCCCCEEECccccccCcchhH
Confidence            34666666554322111111222 344 99999886541  111111111      2468999999999886533     


Q ss_pred             Chhhhhcccccceecccccccc-----cCCccccccCCCcEEeecCccccccchhhhcccccceeeecccccccc-ccCC
Q 013456          144 LPETIGKLQLLRYVGLRRTFID-----SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS-VQKP  217 (442)
Q Consensus       144 l~~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~  217 (442)
                      ++..+..+++|++|++++|.+.     .++..+.++++|++|++++|.+..+|..+..+++|++|+++.+..... .+..
T Consensus       184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence            3445667899999999998875     334455788999999999999888888899999999999975322100 1111


Q ss_pred             CCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecc--------------
Q 013456          218 FVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSI--------------  283 (442)
Q Consensus       218 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~--------------  283 (442)
                      ..+..+++|+.+.+..+ .....+..+..+++|++|++++|......+...+..+++|+.|+++++              
T Consensus       264 ~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK  342 (592)
T ss_dssp             SCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred             HHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence            23445555555554432 123344444555555555555554332233333444555555555421              


Q ss_pred             --------------------ccccCCccccccccCCcCCCceEEeccccCC---CcccccCCCceeEEEEe----ccCCC
Q 013456          284 --------------------NDFYVPSDLAIGSLNNHKELKELYLLGRLPG---PLKLHELPPNLRIFTLS----LSYLS  336 (442)
Q Consensus       284 --------------------~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~L~l~----~~~~~  336 (442)
                                          ...+...  .......+++|++|.+..+...   ...+...+++|+.|+++    .+.++
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~  420 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRG--LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT  420 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHH--HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred             CCCEEEeecCccccccccccCccCHHH--HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence                                1111000  0000122455555555332211   11122213566666665    23344


Q ss_pred             CC-----CcccccCCCCCcEEEeCccc--ccCcccccCCCCCCcccEEEecccCCcc-eEEeCCCccccccEEEeccCCC
Q 013456          337 ED-----PMPVLGQLRELKALRLFAHS--YIGEKMTCGNGGFPQLRVLKLWVLKELK-EWTIEEGAMTALEKLEIRNCPK  408 (442)
Q Consensus       337 ~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~  408 (442)
                      +.     ++..+..+++|+.|+++.|.  +.+..+......+++|++|++++|.... .++.....+++|++|++++|..
T Consensus       421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence            32     12224556677777775433  3333222222347778888887765322 1233335678999999999985


Q ss_pred             CCC--CccCCCCCCCcEEEeccccccc
Q 013456          409 LKM--PTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       409 l~~--p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      ...  +..+..+++|++|+|++|+++.
T Consensus       501 ~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          501 SERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             BHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            432  4445678999999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=1e-20  Score=184.47  Aligned_cols=225  Identities=18%  Similarity=0.126  Sum_probs=128.6

Q ss_pred             CCChhhhhcc----cccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccC
Q 013456          142 PVLPETIGKL----QLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQK  216 (442)
Q Consensus       142 ~~l~~~l~~l----~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~  216 (442)
                      ..+|..+..+    ++|++|+|++|.+..++ ..++.+++|++|+|++|.++..++ +..+++|++|++++|.+.+. + 
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~-   96 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L-   96 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E-
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C-
Confidence            3445555444    48999999999998874 678999999999999999986655 88999999999999987632 2 


Q ss_pred             CCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccc
Q 013456          217 PFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGS  296 (442)
Q Consensus       217 ~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  296 (442)
                           ..++|+.|++.++......+   ..+++|+.|++++|.+. ...+..+..+                        
T Consensus        97 -----~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~-~~~~~~~~~l------------------------  143 (487)
T 3oja_A           97 -----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCR------------------------  143 (487)
T ss_dssp             -----ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCC-SGGGBCGGGG------------------------
T ss_pred             -----CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCC-CCCchhhcCC------------------------
Confidence                 22556666655554433221   12234444444443322 2222223333                        


Q ss_pred             cCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCccccc-CCCCCcEEEeCcccccCcccccCCCCCCccc
Q 013456          297 LNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLG-QLRELKALRLFAHSYIGEKMTCGNGGFPQLR  375 (442)
Q Consensus       297 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  375 (442)
                                                ++|+.|++++|.+++..+..+. .+++|+.|++++|.+.+..   ....+++|+
T Consensus       144 --------------------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~L~  194 (487)
T 3oja_A          144 --------------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLK  194 (487)
T ss_dssp             --------------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CCCCCTTCC
T ss_pred             --------------------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc---ccccCCCCC
Confidence                                      4455555555555443343433 4555555555555554321   122355555


Q ss_pred             EEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccc
Q 013456          376 VLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLK  432 (442)
Q Consensus       376 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~  432 (442)
                      .|++++| .+..++.....+++|+.|++++|.+..+|..+..+++|+.|++++|++.
T Consensus       195 ~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          195 TLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            5555554 2334443344555555555555555544555555555555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=1.3e-21  Score=196.51  Aligned_cols=324  Identities=15%  Similarity=0.033  Sum_probs=198.0

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCC-----CChhhhhcccccceecccccccccC
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKP-----VLPETIGKLQLLRYVGLRRTFIDSI  167 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~L~~~~i~~l  167 (442)
                      .+++|+.|.+.++.........+..+.      ..+++|++|+++++.+.     .++..+.++++|++|++++|.+..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~------~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l  235 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELA------QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL  235 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHH------HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHH------hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence            456666666665532221111111111      23555555555555443     1223344455555555555554444


Q ss_pred             Cccc---------------------------cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCC
Q 013456          168 PKSL---------------------------GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVK  220 (442)
Q Consensus       168 p~~~---------------------------~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~  220 (442)
                      |..+                           ..+++|+.|+++++....+|..+..+++|++|++++|.+...... ..+
T Consensus       236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~-~~~  314 (592)
T 3ogk_B          236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC-TLI  314 (592)
T ss_dssp             HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH-HHH
T ss_pred             HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHH-HHH
Confidence            4444                           444555555555544446777778899999999999885433221 135


Q ss_pred             CCCcccccccccccCCCCCchhhhccccCcceeeEEe-----------eccccchhHHhhcCCcccccceeeccccccCC
Q 013456          221 PSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLIC-----------NIASLGKITNLIQGLTSLESLRLRSINDFYVP  289 (442)
Q Consensus       221 ~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  289 (442)
                      ..+++|+.|++..+-...........+++|++|+++.           +..+...+......+++|+.|++..+..... 
T Consensus       315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~-  393 (592)
T 3ogk_B          315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE-  393 (592)
T ss_dssp             TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH-
T ss_pred             HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH-
Confidence            7889999998873322233344456789999999993           4444344555566789999999976554321 


Q ss_pred             ccccccccC-CcCCCceEEecccc-----CCC-------cccccCCCceeEEEEeccC--CCCCCccccc-CCCCCcEEE
Q 013456          290 SDLAIGSLN-NHKELKELYLLGRL-----PGP-------LKLHELPPNLRIFTLSLSY--LSEDPMPVLG-QLRELKALR  353 (442)
Q Consensus       290 ~~~~~~~~~-~~~~L~~l~l~~~~-----~~~-------~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~-~l~~L~~L~  353 (442)
                         .+..+. .+++|+.|++.+..     ...       ..+.. +++|+.|+++.|.  +++..+..++ .+++|+.|+
T Consensus       394 ---~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          394 ---SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             ---HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             ---HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence               112233 37899999997431     110       00222 4899999998754  5544444444 489999999


Q ss_pred             eCcccccCcccccCCCCCCcccEEEecccCCcce--EEeCCCccccccEEEeccCCCCCC-Cc-cCCCCCCCcEEEeccc
Q 013456          354 LFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE--WTIEEGAMTALEKLEIRNCPKLKM-PT-ELTKLSNLKELTLVKK  429 (442)
Q Consensus       354 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~-p~-~l~~l~~L~~L~l~~n  429 (442)
                      +++|.+.+........++++|+.|++++|. +..  ++.....+++|+.|++++|..... .. -...++.+....+..+
T Consensus       470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             ECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            999998765555446788999999999997 332  233335689999999999996554 22 2245677766655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=1.1e-19  Score=164.15  Aligned_cols=202  Identities=20%  Similarity=0.161  Sum_probs=120.0

Q ss_pred             ceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccc-hhhhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l  205 (442)
                      ++|++|+++++.+..++. .+.++++|++|++++|.+..++. .++++++|++|++++|.++.++ ..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            347777777776666654 56677777777777777766643 5667777777777777776544 45667777777777


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCC-chhhhccccCcceeeEEeeccccchhHHhhcCCcccc----ccee
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP-PLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLE----SLRL  280 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l  280 (442)
                      ++|.+....+.  .++.+++|++|++.++..... .+..++.+++|+.|++++|.+. ...+..+..+.+|+    .|++
T Consensus       108 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          108 VETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             TTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCCccccCch--hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeec
Confidence            77766543332  256666666666666555432 3555566666666666655443 22222333333333    3444


Q ss_pred             eccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456          281 RSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI  360 (442)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  360 (442)
                      ++|.....+.                          ..... .+|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus       185 s~n~l~~~~~--------------------------~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          185 SLNPMNFIQP--------------------------GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCCCEECT--------------------------TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcccccCc--------------------------cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            4443322111                          11112 36777777777777655555677777888887777664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.3e-20  Score=175.55  Aligned_cols=255  Identities=22%  Similarity=0.209  Sum_probs=165.4

Q ss_pred             eeEEEecCCCCCCCChhhhhcc--cccceecccccccccCCccccccCCCcEEeecCcccc-c-cchhhhcccccceeee
Q 013456          130 LLRVLDLEDVYKPVLPETIGKL--QLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-S-LPKSIWKVKTLRHLYL  205 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l--~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~-lp~~i~~l~~L~~L~l  205 (442)
                      .++.++++++.+.  +..+..+  +++++|++++|.+...+..+.++++|++|++++|.+. . +|..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            4788888877665  5667777  8899999999888877666778899999999999877 3 7778888999999999


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCC--CchhhhccccCcceeeEEee-ccccchhHHhhcCCc-ccccceee
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKS--PPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLT-SLESLRLR  281 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~-~L~~L~l~  281 (442)
                      ++|.+.+..+.  .++.+++|++|++.++....  ..+..+..+++|++|++++| ......++..+..++ +|+.|+++
T Consensus       126 ~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          126 EGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             TTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            98876654443  36667777777777763322  24555677778888888777 655334566666777 77777777


Q ss_pred             cccc-ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccC-CCCCCcccccCCCCCcEEEeCcccc
Q 013456          282 SIND-FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSY-LSEDPMPVLGQLRELKALRLFAHSY  359 (442)
Q Consensus       282 ~~~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~  359 (442)
                      +|.. ... ...                      +..+..+ ++|+.|++++|. +++..+..++.+++|+.|++++|..
T Consensus       204 ~~~~~~~~-~~l----------------------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          204 GYRKNLQK-SDL----------------------STLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             SCGGGSCH-HHH----------------------HHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             CCcccCCH-HHH----------------------HHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            7631 100 000                      0011222 677777777776 5555666777788888888887742


Q ss_pred             cCcccccCCCCCCcccEEEecccCCcceEEeCCCcc-ccccEEEeccCCCCCC-CccCC
Q 013456          360 IGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAM-TALEKLEIRNCPKLKM-PTELT  416 (442)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~-p~~l~  416 (442)
                      ........+..+++|+.|++++|  +...  ....+ .+|+.|++++|...+. |..+.
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence            21111112556777788877776  2110  01112 2355566776666655 44443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.3e-19  Score=161.51  Aligned_cols=125  Identities=25%  Similarity=0.280  Sum_probs=78.6

Q ss_pred             eeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccchhh-hcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~  207 (442)
                      ..+.++++++.+..+|..+.  ++|++|++++|.+..+|. .++++++|++|++++|.++.+|..+ ..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            46678888777777776554  577888888887777754 5777888888888888887776654 5678888888887


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  258 (442)
                      |.+... +.. .+..+++|+.|++.++......+..++.+++|+.|++++|
T Consensus        95 n~l~~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           95 NKLQAL-PIG-VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             SCCCCC-CTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcCCcC-CHh-HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            766532 211 3455555555555544443333333444444444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=2.9e-20  Score=167.54  Aligned_cols=107  Identities=21%  Similarity=0.232  Sum_probs=51.1

Q ss_pred             hhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456          148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR  227 (442)
Q Consensus       148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~  227 (442)
                      ...+++|+.|+++++.+..++ .++.+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+.  .++.+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChh--HhcCCcCCC
Confidence            344555555555555555443 3555555666666655555443 455555556665555554422111  234444444


Q ss_pred             cccccccCCCCCchhhhccccCcceeeEEee
Q 013456          228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       228 ~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  258 (442)
                      +|++.++......+..++.+++|+.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence            4444443333222223344444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=2.2e-19  Score=164.66  Aligned_cols=146  Identities=16%  Similarity=0.197  Sum_probs=89.0

Q ss_pred             cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      .+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence            4667777777777776665 56677777777777777777765 777777777777777777664 46677777777777


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN  284 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  284 (442)
                      +|.+... +   .+..+++|+.|++.++......+  +..+++|+.|++++|.+.  .++. +..+++|+.|++++|.
T Consensus       116 ~n~l~~~-~---~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          116 STQITDV-T---PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS--DLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             TSCCCCC-G---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSC
T ss_pred             CCCCCCc-h---hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC--CChh-hcCCCCCCEEECCCCc
Confidence            7766532 2   15555666666555554433221  445555555555555332  1222 4444455555554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=6.5e-20  Score=165.23  Aligned_cols=177  Identities=24%  Similarity=0.254  Sum_probs=125.9

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchh-hhcccccceee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLY  204 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~  204 (442)
                      ..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.++.++.. +..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            45678888888888777664 4777888888888888877764 677888888888888888866554 57788888888


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN  284 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  284 (442)
                      +++|.+.+..+.  .++.+++|+.|++.++......+..++.+++|+.|++++|.+. ...+..+..+++|+.|++++|.
T Consensus       116 L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          116 LVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCCccCHH--HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence            888887643332  4678888888888888766655566778888888888888655 4444456778888888888877


Q ss_pred             cccCCccccccccCCcCCCceEEeccc
Q 013456          285 DFYVPSDLAIGSLNNHKELKELYLLGR  311 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~  311 (442)
                      ....+..    .+..+++|+.+++.++
T Consensus       193 l~~~~~~----~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          193 LKSVPDG----VFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSCCCTT----TTTTCTTCCEEECCSS
T ss_pred             CCccCHH----HHhCCcCCCEEEccCC
Confidence            6554332    1333444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=3.9e-21  Score=179.03  Aligned_cols=252  Identities=16%  Similarity=0.128  Sum_probs=172.0

Q ss_pred             ccceecccccccccCCcccccc--CCCcEEeecCccccccchhhhcccccceeeecccccccc-ccCCCCCCCCcccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDL--HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS-VQKPFVKPSLTNLRTL  229 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l--~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L  229 (442)
                      .++.++++++.+.  |..+..+  +++++|++++|.+...+..+..+++|++|++++|.+... .+.  .+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH--HHTTBCCCSEE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH--HHhhCCCCCEE
Confidence            4777888877654  4456666  788888888888876666677788888888888876533 332  35677777777


Q ss_pred             cccccCCCCCchhhhccccCcceeeEEee-ccccchhHHhhcCCcccccceeecc-ccccCCccccccccCCcCCCceEE
Q 013456          230 WGLSIGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSI-NDFYVPSDLAIGSLNNHKELKELY  307 (442)
Q Consensus       230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~L~~l~  307 (442)
                      ++.++......+..++.+++|++|++++| ......++..+..+++|+.|++++| .......                 
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-----------------  186 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-----------------  186 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-----------------
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-----------------
Confidence            77777655556666777777777777776 3442245666666777777777776 3321100                 


Q ss_pred             eccccCCCcccccCCC-ceeEEEEecc--CCC-CCCcccccCCCCCcEEEeCccc-ccCcccccCCCCCCcccEEEeccc
Q 013456          308 LLGRLPGPLKLHELPP-NLRIFTLSLS--YLS-EDPMPVLGQLRELKALRLFAHS-YIGEKMTCGNGGFPQLRVLKLWVL  382 (442)
Q Consensus       308 l~~~~~~~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~  382 (442)
                             +..+..+ + +|++|++++|  .++ ...+..+..+++|+.|++++|. +.+..+. .+..+++|++|++++|
T Consensus       187 -------~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          187 -------QVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             -------HHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred             -------HHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence                   1113334 5 8899999888  454 3455677889999999999998 4444444 4778899999999998


Q ss_pred             CCcceE-EeCCCccccccEEEeccCCCCCCCccCCCC-CCCcEEEeccccccccCCC
Q 013456          383 KELKEW-TIEEGAMTALEKLEIRNCPKLKMPTELTKL-SNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       383 ~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l-~~L~~L~l~~n~l~~~p~~  437 (442)
                      ..+... ....+.+++|+.|++++| ..  ...+..+ .+|+.|++++|+++.+.+.
T Consensus       258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~--~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          258 YDIIPETLLELGEIPTLKTLQVFGI-VP--DGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTS-SC--TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CCCCHHHHHHHhcCCCCCEEeccCc-cC--HHHHHHHHhhCcceEEecccCccccCC
Confidence            643321 123467999999999999 22  2334444 3477778999999776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=3.9e-19  Score=161.38  Aligned_cols=200  Identities=21%  Similarity=0.154  Sum_probs=119.4

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY  204 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  204 (442)
                      .++++++.++++++.+..+|..+.  +++++|++++|.+..+ |..+.++++|++|++++|.++.++.. ..+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            456777788888777777776553  5777888888777766 45677778888888888877766654 6777788888


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIN  284 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  284 (442)
                      +++|.+. .+|.  .+..+++|+.|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.
T Consensus        84 Ls~N~l~-~l~~--~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           84 LSHNQLQ-SLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CCSSCCS-SCCC--CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCcCC-cCch--hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence            8777665 2232  3555666666666555554444444555555666655555433 2222334445555555555554


Q ss_pred             cccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456          285 DFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY  359 (442)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  359 (442)
                      +...+...                         +..+ ++|+.|++++|.++ .++..+..+++|+.+++.+|.+
T Consensus       160 l~~l~~~~-------------------------~~~l-~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          160 LTELPAGL-------------------------LNGL-ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CSCCCTTT-------------------------TTTC-TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCccCHHH-------------------------hcCc-CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            43322210                         1122 45566666666555 3444555556666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.3e-18  Score=156.54  Aligned_cols=200  Identities=25%  Similarity=0.313  Sum_probs=137.4

Q ss_pred             cccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCccccccc
Q 013456          152 QLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLW  230 (442)
Q Consensus       152 ~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~  230 (442)
                      ...++++++++.++.+|..+.  ++|++|++++|.++.+|. .+.++++|++|++++|.+.. ++.. .+..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~-~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAG-IFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTT-TTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChh-hhcCCCCCCEEE
Confidence            357899999999999998764  689999999999998775 68899999999999998763 3322 457788888888


Q ss_pred             ccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecc
Q 013456          231 GLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLG  310 (442)
Q Consensus       231 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  310 (442)
                      +..+......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+...+..                   
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------  151 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKG-------------------  151 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------------
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHh-------------------
Confidence            8777766555555677777777777776544 33334456666677777666654433221                   


Q ss_pred             ccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456          311 RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (442)
                            .+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|+
T Consensus       152 ------~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          152 ------VFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             ------HccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCC
Confidence                  12222 5667777777766655555566777777777777766542 22235667777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=9.3e-19  Score=158.11  Aligned_cols=222  Identities=18%  Similarity=0.138  Sum_probs=140.9

Q ss_pred             ecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccC
Q 013456          157 VGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       157 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      .+-.+..+..+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+....+.  .+..+++|++|++    
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L----   83 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLIL----   83 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT--TTTTCTTCCEEEC----
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH--HccCCcCCCEEEC----
Confidence            4444556777887664  579999999999997765 788899999999999877643221  3445555555544    


Q ss_pred             CCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCC
Q 013456          236 KKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP  315 (442)
Q Consensus       236 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  315 (442)
                                          ++|.+. ...+..+.++++|+.|++++|.....+..                        
T Consensus        84 --------------------~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------  118 (276)
T 2z62_A           84 --------------------TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENF------------------------  118 (276)
T ss_dssp             --------------------TTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTC------------------------
T ss_pred             --------------------CCCccC-ccChhhhcCCccccEEECCCCCccccCch------------------------
Confidence                                444332 22234455566666666666554332221                        


Q ss_pred             cccccCCCceeEEEEeccCCCCC-CcccccCCCCCcEEEeCcccccCcccccCCCCCCccc----EEEecccCCcceEEe
Q 013456          316 LKLHELPPNLRIFTLSLSYLSED-PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR----VLKLWVLKELKEWTI  390 (442)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~  390 (442)
                       .+..+ ++|+.|++++|.++.. .+..++.+++|+.|++++|.+.+.... .+..+++|+    .|++++| .+..++.
T Consensus       119 -~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L~ls~n-~l~~~~~  194 (276)
T 2z62_A          119 -PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLN-PMNFIQP  194 (276)
T ss_dssp             -CCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEEECCSS-CCCEECT
T ss_pred             -hcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-HhhhhhhccccceeeecCCC-cccccCc
Confidence             12223 5677777777776652 466777778888888887777543222 233344444    7777775 3455554


Q ss_pred             CCCccccccEEEeccCCCCCCCc-cCCCCCCCcEEEeccccccccC
Q 013456          391 EEGAMTALEKLEIRNCPKLKMPT-ELTKLSNLKELTLVKKVLKMKP  435 (442)
Q Consensus       391 ~~~~~~~L~~L~l~~c~~l~~p~-~l~~l~~L~~L~l~~n~l~~~p  435 (442)
                      .....++|+.|++++|.....|. .+..+++|++|++++|++..-.
T Consensus       195 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            44445578888888888777744 4577888888888888886543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=1.3e-20  Score=178.92  Aligned_cols=83  Identities=12%  Similarity=0.184  Sum_probs=57.0

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCcccc----ccchhh-----
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNIT----SLPKSI-----  194 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~i-----  194 (442)
                      +.|+...++......++..+..+++|++|++++|.++.     ++..+..+++|++|+|++|.+.    .+|..+     
T Consensus         9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~   88 (386)
T 2ca6_A            9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ   88 (386)
T ss_dssp             CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence            45555555555566677778888888888888887764     3344667888888888887444    344444     


Q ss_pred             --hcccccceeeecccccc
Q 013456          195 --WKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       195 --~~l~~L~~L~l~~~~~~  211 (442)
                        ..+++|++|++++|.+.
T Consensus        89 ~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           89 ALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHTTCTTCCEEECCSCCCC
T ss_pred             HHhhCCcccEEECCCCcCC
Confidence              56777777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=2.8e-18  Score=155.74  Aligned_cols=201  Identities=19%  Similarity=0.168  Sum_probs=111.7

Q ss_pred             hhcccccceecccccccccCCccccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456          148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL  226 (442)
Q Consensus       148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  226 (442)
                      +++++++++++++++.++.+|..+.  +++++|++++|.++.+ |..+..+++|++|++++|.+... +.   .      
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~---~------   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV---D------   73 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC---C------
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC---C------
Confidence            5567788888888888888877664  6788888888888755 45677788888888887765421 10   0      


Q ss_pred             ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceE
Q 013456          227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKEL  306 (442)
Q Consensus       227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l  306 (442)
                                        +.+++|+.|++++|.+  ..++..+..+++                                
T Consensus        74 ------------------~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~--------------------------------  101 (290)
T 1p9a_G           74 ------------------GTLPVLGTLDLSHNQL--QSLPLLGQTLPA--------------------------------  101 (290)
T ss_dssp             ------------------SCCTTCCEEECCSSCC--SSCCCCTTTCTT--------------------------------
T ss_pred             ------------------CCCCcCCEEECCCCcC--CcCchhhccCCC--------------------------------
Confidence                              2334455555555432  223333333444                                


Q ss_pred             EeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcc
Q 013456          307 YLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELK  386 (442)
Q Consensus       307 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  386 (442)
                                        |+.|++++|.++...+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|. ++
T Consensus       102 ------------------L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~  161 (290)
T 1p9a_G          102 ------------------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT  161 (290)
T ss_dssp             ------------------CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred             ------------------CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CC
Confidence                              44444444444433334455555555555555544432 22223445555555555532 33


Q ss_pred             eEEeC-CCccccccEEEeccCCCCCCCccCCCCCCCcEEEecccccc
Q 013456          387 EWTIE-EGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLK  432 (442)
Q Consensus       387 ~~~~~-~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~  432 (442)
                      .++.. ...+++|+.|++++|.+..+|.++..+++|+.|++++|++.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            33322 23455666666666655555555555566666666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=5.9e-21  Score=191.83  Aligned_cols=108  Identities=20%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             CceeEEEEe--c----cCCCCCC-----cccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcce-EEe
Q 013456          323 PNLRIFTLS--L----SYLSEDP-----MPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE-WTI  390 (442)
Q Consensus       323 ~~L~~L~l~--~----~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~  390 (442)
                      ++|+.|+++  +    +.++...     ...+..+++|+.|++++ .+.+..+......+++|+.|++++|..... +..
T Consensus       397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~  475 (594)
T 2p1m_B          397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH  475 (594)
T ss_dssp             TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred             CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence            677777777  2    2333211     11245677777777765 443333222112378888888888753222 111


Q ss_pred             CCCccccccEEEeccCCCCCC--CccCCCCCCCcEEEeccccc
Q 013456          391 EEGAMTALEKLEIRNCPKLKM--PTELTKLSNLKELTLVKKVL  431 (442)
Q Consensus       391 ~~~~~~~L~~L~l~~c~~l~~--p~~l~~l~~L~~L~l~~n~l  431 (442)
                      ....+++|+.|++++|+....  ...+..+++|++|++++|++
T Consensus       476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            124589999999999988433  33456689999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=4.4e-18  Score=155.96  Aligned_cols=208  Identities=20%  Similarity=0.139  Sum_probs=142.6

Q ss_pred             eEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccc
Q 013456          131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHL  210 (442)
Q Consensus       131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~  210 (442)
                      +..+.+....+... ....++++|++|+++++.+..+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus        21 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           21 AIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred             HHHHHhCCCCcCce-ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence            33334554444443 23567899999999999999987 68999999999999999998887 99999999999999987


Q ss_pred             cccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCc
Q 013456          211 QMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPS  290 (442)
Q Consensus       211 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  290 (442)
                      ... +   .+..+++|+.|++.++..... + .+..+++|+.|++++|.+.  .++. +..+++|+.|++++|.....+.
T Consensus        98 ~~~-~---~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l~~n~l~~~~~  168 (308)
T 1h6u_A           98 KNV-S---AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT--NISP-LAGLTNLQYLSIGNAQVSDLTP  168 (308)
T ss_dssp             SCC-G---GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC--CCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCc-h---hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC--cCcc-ccCCCCccEEEccCCcCCCChh
Confidence            642 2   477888888888887776543 2 3777788888888877543  2222 6667777777777765443221


Q ss_pred             cccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCC
Q 013456          291 DLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGG  370 (442)
Q Consensus       291 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  370 (442)
                            +..+                      ++|+.|++++|.+++..  .+..+++|+.|++++|.+.+..+   +..
T Consensus       169 ------l~~l----------------------~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~---l~~  215 (308)
T 1h6u_A          169 ------LANL----------------------SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP---LAN  215 (308)
T ss_dssp             ------GTTC----------------------TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG---GTT
T ss_pred             ------hcCC----------------------CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCcccc---ccC
Confidence                  2222                      55666666666655322  25666666666666666654331   456


Q ss_pred             CCcccEEEecccC
Q 013456          371 FPQLRVLKLWVLK  383 (442)
Q Consensus       371 ~~~L~~L~l~~~~  383 (442)
                      +++|+.|++++|+
T Consensus       216 l~~L~~L~l~~N~  228 (308)
T 1h6u_A          216 TSNLFIVTLTNQT  228 (308)
T ss_dssp             CTTCCEEEEEEEE
T ss_pred             CCCCCEEEccCCe
Confidence            6666666666653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=1.3e-20  Score=178.81  Aligned_cols=88  Identities=22%  Similarity=0.237  Sum_probs=72.0

Q ss_pred             hhcCceeEEEecCCCCCCC-----Chhhhhcccccceeccccccccc----CCccc-------cccCCCcEEeecCcccc
Q 013456          125 IRGYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFIDS----IPKSL-------GDLHSLETLDMKHTNIT  188 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i~~----lp~~~-------~~l~~L~~L~L~~~~l~  188 (442)
                      +..+++|++|++++|.+..     ++..+..+++|++|+|++|.+..    +|..+       ..+++|++|+|++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            4568999999999997765     33457789999999999976553    34444       68899999999999988


Q ss_pred             c-----cchhhhcccccceeeeccccccc
Q 013456          189 S-----LPKSIWKVKTLRHLYLNDIHLQM  212 (442)
Q Consensus       189 ~-----lp~~i~~l~~L~~L~l~~~~~~~  212 (442)
                      .     +|..+..+++|++|++++|.+..
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            5     78889999999999999998753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=8.2e-18  Score=148.48  Aligned_cols=101  Identities=19%  Similarity=0.278  Sum_probs=75.0

Q ss_pred             eeEEEEecc-CCCCCCcccccCCCCCc-EEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCcc-ccccE
Q 013456          325 LRIFTLSLS-YLSEDPMPVLGQLRELK-ALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAM-TALEK  400 (442)
Q Consensus       325 L~~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~  400 (442)
                      |+.|++++| .++...+..+..+++|+ .|++++|.+. ..+...+.. ++|+.|++++|..++.++. ....+ ++|+.
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~  209 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL  209 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence            447788877 77655555688888898 9999888876 333333444 7899999998765666643 35667 89999


Q ss_pred             EEeccCCCCCCCccCCCCCCCcEEEeccc
Q 013456          401 LEIRNCPKLKMPTELTKLSNLKELTLVKK  429 (442)
Q Consensus       401 L~l~~c~~l~~p~~l~~l~~L~~L~l~~n  429 (442)
                      |++++|....+|..  .+++|+.|+++++
T Consensus       210 L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          210 LDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             EECCCCccccCChh--HhccCceeeccCc
Confidence            99999888777654  6788999998876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=2.8e-19  Score=168.07  Aligned_cols=83  Identities=11%  Similarity=0.077  Sum_probs=50.2

Q ss_pred             ceeEEEecCCCCCCCCh-----hhhhccc-ccceecccccccccC-Ccccccc-----CCCcEEeecCcccccc-chhhh
Q 013456          129 RLLRVLDLEDVYKPVLP-----ETIGKLQ-LLRYVGLRRTFIDSI-PKSLGDL-----HSLETLDMKHTNITSL-PKSIW  195 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~-----~~l~~l~-~L~~L~L~~~~i~~l-p~~~~~l-----~~L~~L~L~~~~l~~l-p~~i~  195 (442)
                      ++|++|++++|.+...+     ..+..++ +|++|++++|.++.. +..++.+     ++|++|++++|.++.. +..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            33777777777665554     4455666 677777777766654 3344443     6777777777776633 33232


Q ss_pred             ----cc-cccceeeecccccc
Q 013456          196 ----KV-KTLRHLYLNDIHLQ  211 (442)
Q Consensus       196 ----~l-~~L~~L~l~~~~~~  211 (442)
                          .+ ++|++|++++|.+.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCC
Confidence                33 66777777776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=1.5e-20  Score=188.96  Aligned_cols=324  Identities=15%  Similarity=0.096  Sum_probs=187.1

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-----hhhhhcccccceeccccc-cccc
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-----PETIGKLQLLRYVGLRRT-FIDS  166 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~l~~l~~L~~L~L~~~-~i~~  166 (442)
                      .+++|+.|.+.++.........+..+      ...+++|++|+++++. ..+     +..+.++++|++|++++| .+..
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~------~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~  226 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHF------PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK  226 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGS------CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHH------hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence            56677777766543221111111111      1245666666666554 111     122234566666666665 3444


Q ss_pred             CCccccccCCCcEEeecCc-------------------------------cccccchhhhcccccceeeecccccccccc
Q 013456          167 IPKSLGDLHSLETLDMKHT-------------------------------NITSLPKSIWKVKTLRHLYLNDIHLQMSVQ  215 (442)
Q Consensus       167 lp~~~~~l~~L~~L~L~~~-------------------------------~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~  215 (442)
                      +|..+.++++|++|++..+                               ....++..+..+++|++|++++|.+.....
T Consensus       227 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l  306 (594)
T 2p1m_B          227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL  306 (594)
T ss_dssp             HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH
T ss_pred             HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH
Confidence            4555555556666654332                               222344555567888888888877543221


Q ss_pred             CCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEe---------eccccchhHHhhcCCcccccceeeccccc
Q 013456          216 KPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLIC---------NIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       216 ~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~---------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                       ...+..+++|+.|++.++............+++|+.|++..         +..+...+......+++|+.|.+.++...
T Consensus       307 -~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          307 -VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             -HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred             -HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence             11245778888888776622112222233578888888833         23332223333334778888866655443


Q ss_pred             cCCcccccccc-CCcCCCceEEec--c---ccCCC-----cc----cccCCCceeEEEEeccCCCCCCcccccC-CCCCc
Q 013456          287 YVPSDLAIGSL-NNHKELKELYLL--G---RLPGP-----LK----LHELPPNLRIFTLSLSYLSEDPMPVLGQ-LRELK  350 (442)
Q Consensus       287 ~~~~~~~~~~~-~~~~~L~~l~l~--~---~~~~~-----~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~  350 (442)
                      ...    ...+ ..+++|+.|++.  +   +....     ..    +.. +++|+.|++++ .+++..+..++. +++|+
T Consensus       386 ~~~----~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~  459 (594)
T 2p1m_B          386 NAA----LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDLRRLSLSG-LLTDKVFEYIGTYAKKME  459 (594)
T ss_dssp             HHH----HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTCCEEECCS-SCCHHHHHHHHHHCTTCC
T ss_pred             HHH----HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCccEEeecC-cccHHHHHHHHHhchhcc
Confidence            211    1122 246889999998  3   11111     01    223 37999999977 566555555655 89999


Q ss_pred             EEEeCcccccCcccccCCCCCCcccEEEecccCCcce-EEeCCCccccccEEEeccCCCCCC-CccC-CCCCCCcEEEec
Q 013456          351 ALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKE-WTIEEGAMTALEKLEIRNCPKLKM-PTEL-TKLSNLKELTLV  427 (442)
Q Consensus       351 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~c~~l~~-p~~l-~~l~~L~~L~l~  427 (442)
                      .|++++|.+++.........+++|+.|++++|+.... +......+++|+.|++++|+.... ...+ ..+++|+...+.
T Consensus       460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence            9999999987655443235699999999999976222 222345689999999999987432 2233 457888777776


Q ss_pred             ccc
Q 013456          428 KKV  430 (442)
Q Consensus       428 ~n~  430 (442)
                      .+.
T Consensus       540 ~~~  542 (594)
T 2p1m_B          540 ERG  542 (594)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=5.4e-18  Score=158.42  Aligned_cols=78  Identities=19%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             CceeEEEEec-cCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEE
Q 013456          323 PNLRIFTLSL-SYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKL  401 (442)
Q Consensus       323 ~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  401 (442)
                      .+|+.+++.+ |.++......|..+++|+.|++++|.+... +   ...|.+|+.|.+.++..++.+|. ...+++|+.+
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p---~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l  251 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-P---SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEA  251 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-C---SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-C---hhhhccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence            3556666654 344433334456666666666666665432 1   12355566666655555555552 3456666666


Q ss_pred             Eecc
Q 013456          402 EIRN  405 (442)
Q Consensus       402 ~l~~  405 (442)
                      ++.+
T Consensus       252 ~l~~  255 (350)
T 4ay9_X          252 SLTY  255 (350)
T ss_dssp             ECSC
T ss_pred             cCCC
Confidence            6543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=3.5e-18  Score=150.88  Aligned_cols=56  Identities=16%  Similarity=0.091  Sum_probs=33.1

Q ss_pred             CceeEEEEeccC-CCCCCcccccCC-CCCcEEEeCcccccCcccccCCCCCCcccEEEeccc
Q 013456          323 PNLRIFTLSLSY-LSEDPMPVLGQL-RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVL  382 (442)
Q Consensus       323 ~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  382 (442)
                      ++|+.|++++|. ++...+..+..+ ++|+.|++++|.+....    ...|++|+.|.+.++
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~----~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP----SKGLEHLKELIARNT  236 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC----CTTCTTCSEEECTTC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC----hhHhccCceeeccCc
Confidence            466666666663 554444556666 67777777776665321    125666666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=2.3e-18  Score=158.16  Aligned_cols=112  Identities=16%  Similarity=0.130  Sum_probs=76.4

Q ss_pred             hhhcCceeEEEecCCCCCC-CChhhh--hcccccceecccccccccC-C----ccccccCCCcEEeecCccccccc-hhh
Q 013456          124 AIRGYRLLRVLDLEDVYKP-VLPETI--GKLQLLRYVGLRRTFIDSI-P----KSLGDLHSLETLDMKHTNITSLP-KSI  194 (442)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~~-~l~~~l--~~l~~L~~L~L~~~~i~~l-p----~~~~~l~~L~~L~L~~~~l~~lp-~~i  194 (442)
                      .+..+++|++|++++|.+. ..|..+  ..+++|++|++++|.+... |    ..+..+++|++|++++|.+..++ ..+
T Consensus        86 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  165 (310)
T 4glp_A           86 RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV  165 (310)
T ss_dssp             HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred             HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence            3344677899999888765 445555  7888899999998887642 2    23456888899999888888554 567


Q ss_pred             hcccccceeeecccccccc--ccCCCCCCCCcccccccccccC
Q 013456          195 WKVKTLRHLYLNDIHLQMS--VQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       195 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      ..+++|++|++++|.+.+.  .+.+..++.+++|++|++.++.
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            7888888898888876542  2222223455556655555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=153.32  Aligned_cols=162  Identities=16%  Similarity=0.091  Sum_probs=100.5

Q ss_pred             hccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCC
Q 013456          244 LENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPP  323 (442)
Q Consensus       244 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  323 (442)
                      +..+++|+.|++++|.+. ...+..+..+++|+.|++++|........                     +.......+ +
T Consensus       141 ~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l-~  197 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKF-P  197 (310)
T ss_dssp             TTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSS-C
T ss_pred             hhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcC-C
Confidence            345666777777766553 33445566666777777766653221000                     000111233 5


Q ss_pred             ceeEEEEeccCCCCCCcc----cccCCCCCcEEEeCcccccCccccc--CCCCCCcccEEEecccCCcceEEeCCCcccc
Q 013456          324 NLRIFTLSLSYLSEDPMP----VLGQLRELKALRLFAHSYIGEKMTC--GNGGFPQLRVLKLWVLKELKEWTIEEGAMTA  397 (442)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  397 (442)
                      +|++|++++|.++. .+.    .++.+++|+.|++++|.+.+..+..  ....+++|++|++++|. ++.++...  +++
T Consensus       198 ~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~  273 (310)
T 4glp_A          198 AIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAK  273 (310)
T ss_dssp             CCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSC
T ss_pred             CCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCC
Confidence            67777777776652 222    2466788888888888776653322  12223688888888764 44554433  478


Q ss_pred             ccEEEeccCCCCCCCccCCCCCCCcEEEeccccccc
Q 013456          398 LEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       398 L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      |+.|++++|.+..+|. +..+++|++|++++|+++.
T Consensus       274 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          274 LRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence            9999999998887755 6788999999999998853

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=5e-19  Score=166.30  Aligned_cols=255  Identities=15%  Similarity=0.086  Sum_probs=152.7

Q ss_pred             EecCCCCCCCC-hhhhhcccccceecccccccccCC-----ccccccC-CCcEEeecCcccccc-chhhhcc-----ccc
Q 013456          134 LDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIP-----KSLGDLH-SLETLDMKHTNITSL-PKSIWKV-----KTL  200 (442)
Q Consensus       134 L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L  200 (442)
                      ++++++.+... |..+...++|++|++++|.++..+     +.+..++ +|++|++++|.+... +..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            56777766544 444555566999999999888775     4567777 899999999988843 5556665     889


Q ss_pred             ceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccc-cCcceeeEEeeccccch---hHHhhcC-Cccc
Q 013456          201 RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENL-SDLKNLGLICNIASLGK---ITNLIQG-LTSL  275 (442)
Q Consensus       201 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~---~~~~l~~-l~~L  275 (442)
                      ++|++++|.+....+.                      .+...+..+ ++|+.|++++|.+....   +...+.. .++|
T Consensus        83 ~~L~Ls~n~l~~~~~~----------------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  140 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSD----------------------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI  140 (362)
T ss_dssp             CEEECCSSCGGGSCHH----------------------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred             cEEECcCCcCChHHHH----------------------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence            9999988876532211                      122334555 79999999999765222   2233444 3699


Q ss_pred             ccceeeccccccCCccccccccCCcC-CCceEEeccccCCCc-------ccccCCCceeEEEEeccCCCCCC----cccc
Q 013456          276 ESLRLRSINDFYVPSDLAIGSLNNHK-ELKELYLLGRLPGPL-------KLHELPPNLRIFTLSLSYLSEDP----MPVL  343 (442)
Q Consensus       276 ~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~----~~~l  343 (442)
                      +.|++++|.+...........+...+ +|++|+++++.....       .+...+++|+.|++++|.+++..    +..+
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            99999998765432222122223333 677777766532111       12222246777777777665432    2233


Q ss_pred             cC-CCCCcEEEeCcccccCccc---ccCCCCCCcccEEEecccC---C----cceEEeCCCccccccEEEeccCCCCC
Q 013456          344 GQ-LRELKALRLFAHSYIGEKM---TCGNGGFPQLRVLKLWVLK---E----LKEWTIEEGAMTALEKLEIRNCPKLK  410 (442)
Q Consensus       344 ~~-l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~---~----l~~~~~~~~~~~~L~~L~l~~c~~l~  410 (442)
                      .. .++|+.|++++|.+.+...   ...+..+++|+.|++++|.   .    +..+......+++|+.|++++|....
T Consensus       221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            33 3467777777776655332   2234566677777777654   1    11122233455666667776666443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=5.4e-17  Score=151.65  Aligned_cols=54  Identities=19%  Similarity=0.055  Sum_probs=31.7

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecc
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWV  381 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  381 (442)
                      ++|+.|++++|.++......   +.+|+.|.+.++......+  .+..+++|+.+++.+
T Consensus       202 ~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          202 SGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY  255 (350)
T ss_dssp             ECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred             cccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence            67777888777776433323   4455555555443333333  256677777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=2.5e-16  Score=139.94  Aligned_cols=177  Identities=21%  Similarity=0.247  Sum_probs=104.2

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccch-hhhcccccceeeec
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLN  206 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~  206 (442)
                      ...++++++++.+..+|..+.  ++|++|++++|.+..++ ..++++++|++|++++|.++.++. .+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            456778888887877777654  57888888888777664 357778888888888888775544 46777888888887


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      +|.+....+.  .++.                        +++|+.|++++|.+. ...+..+..+++|+.|++++|.+.
T Consensus        92 ~n~l~~~~~~--~~~~------------------------l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           92 NNQLASLPLG--VFDH------------------------LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TSCCCCCCTT--TTTT------------------------CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcccccChh--Hhcc------------------------cCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCC
Confidence            7766532211  2333                        444444444444332 112222344555555555554433


Q ss_pred             cCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456          287 YVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYI  360 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  360 (442)
                      ..+..                         .+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus       145 ~~~~~-------------------------~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          145 SIPAG-------------------------AFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCTT-------------------------TTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCHH-------------------------HcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            22211                         12222 45666666666665544445666666666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=1.5e-16  Score=144.49  Aligned_cols=149  Identities=20%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. ++++++|++|++++|.++.+|. +..+++|++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            34566777777777666664 36667777777777777776655 6777777777777777766544 667777777777


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+... +   .+..+++|+.|++.++.....  ..+..+++|+.|++++|.+.  .++. +..+++|+.|++++|.+
T Consensus       120 ~~n~i~~~-~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~--~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          120 EHNGISDI-N---GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             TTSCCCCC-G---GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCCcCCCC-h---hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc--cchh-hcCCCccCEEECCCCcC
Confidence            77766532 1   355666666666666655443  45666667777777666443  2222 56666677777766654


Q ss_pred             c
Q 013456          286 F  286 (442)
Q Consensus       286 ~  286 (442)
                      .
T Consensus       191 ~  191 (291)
T 1h6t_A          191 S  191 (291)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=1.6e-16  Score=141.13  Aligned_cols=176  Identities=23%  Similarity=0.218  Sum_probs=130.7

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCc-ccc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPK-SLG  172 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~-~~~  172 (442)
                      ...+.+...++....+|...             .+.++.|+++++.+..++. .+.++++|++|++++|.+..++. .+.
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~-------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI-------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC-------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCeEEecCCCCccccCCCC-------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            44566777776666666531             3679999999998888765 68999999999999999988754 579


Q ss_pred             ccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456          173 DLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK  251 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~  251 (442)
                      ++++|++|++++|.++.+|. .+..+++|++|++++|.+....+.  .+..+++|+.|++.++......+..++.+++|+
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            99999999999999997775 568999999999999988743222  367778888888777766655555566777777


Q ss_pred             eeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      .|++++|.+. ...+..+..+++|+.|++++|...
T Consensus       159 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          159 TLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             EEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence            7777776554 333345556666666666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=1.3e-16  Score=158.61  Aligned_cols=149  Identities=19%  Similarity=0.187  Sum_probs=101.1

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+..+..+.+..+.+..++ .+..+++|++|++++|.+..+| .++.+++|++|+|++|.+..++. +..+++|+.|++
T Consensus        18 ~~l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L   94 (605)
T 1m9s_A           18 DAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred             HHHHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence            34455555666665555443 3566778888888888777776 47778888888888888877766 778888888888


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+.. ++   .+..+++|+.|++..+.....  ..+..+++|+.|+++.|.+.  .+ ..+..+++|+.|+|++|.+
T Consensus        95 s~N~l~~-l~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~l-~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           95 DENKIKD-LS---SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             CSSCCCC-CT---TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC--CC-GGGGSCTTCSEEECCSSCC
T ss_pred             cCCCCCC-Ch---hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC--Cc-hhhcccCCCCEEECcCCcC
Confidence            8887653 22   467777777777777665542  34667777777777777543  22 4566677777777776654


Q ss_pred             c
Q 013456          286 F  286 (442)
Q Consensus       286 ~  286 (442)
                      .
T Consensus       166 ~  166 (605)
T 1m9s_A          166 S  166 (605)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=1.6e-16  Score=158.09  Aligned_cols=167  Identities=22%  Similarity=0.186  Sum_probs=96.4

Q ss_pred             cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      .+++|+.|+++++.+..++ .+..+++|++|+|++|.+..+|. +..+++|++|+|++|.+..+| .+..+++|++|+++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred             cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence            3556666666666665554 35566666666666666666554 666666666666666666554 45666666666666


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      +|.+... +   .+..+++|+.|++..+.....  ..+..+++|+.|++++|.+.  .++. +..+++|+.|+|++|.+.
T Consensus       118 ~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          118 HNGISDI-N---GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             TSCCCCC-G---GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCC-c---cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC--Cchh-hccCCCCCEEECcCCCCC
Confidence            6665532 1   255666666666666555443  44666666666666666543  2222 566666666666666544


Q ss_pred             cCCccccccccCCcCCCceEEeccc
Q 013456          287 YVPSDLAIGSLNNHKELKELYLLGR  311 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~l~l~~~  311 (442)
                      ..      ..+..+++|+.|+++++
T Consensus       189 ~l------~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          189 DL------RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             BC------GGGTTCTTCSEEECCSE
T ss_pred             CC------hHHccCCCCCEEEccCC
Confidence            32      12344455555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=2.3e-16  Score=155.27  Aligned_cols=190  Identities=16%  Similarity=0.143  Sum_probs=128.3

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      .+|++|+++++.+..+|..+.  ++|++|++++|.++.+|   +.+++|++|++++|.++.+|. +.+  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            489999999888888887663  78999999999998888   457889999999999888888 555  8999999998


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .+.+ +|.     .+++|+.|++.++.... ++.   .+++|+.|++++|.+.  .++. +.  ++|+.|++++|.+...
T Consensus       131 ~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          131 QLTM-LPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CCSC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCSSC
T ss_pred             cCCC-CCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCCch
Confidence            8764 332     46677777766665543 222   3556666666666443  2343 33  5666666666554432


Q ss_pred             CccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456          289 PSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT  365 (442)
Q Consensus       289 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  365 (442)
                      +. +     ..  +               +...++.|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..+.
T Consensus       196 p~-~-----~~--~---------------L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          196 PA-V-----PV--R---------------NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CC-C-----C-------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             hh-H-----HH--h---------------hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            22 1     00  0               0111133488888888887 4666777788999999988888765443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=5e-16  Score=140.99  Aligned_cols=173  Identities=21%  Similarity=0.230  Sum_probs=143.5

Q ss_pred             cccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccc
Q 013456           92 KQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSL  171 (442)
Q Consensus        92 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~  171 (442)
                      ..+++++.|.+.++.....+.            +..+++|++|++++|.+..++. +..+++|++|++++|.+..+|. +
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~------------~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l  108 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG------------IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L  108 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G
T ss_pred             hhcCcccEEEccCCCcccChh------------HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h
Confidence            467888888888775544432            3568999999999999988877 8899999999999999988765 8


Q ss_pred             cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456          172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK  251 (442)
Q Consensus       172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~  251 (442)
                      +.+++|++|++++|.++.+ ..+..+++|++|++++|.+... +   .++.+++|+.|++.++......+  +..+++|+
T Consensus       109 ~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-T---VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-G---GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-h---hhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence            9999999999999999987 4688999999999999988754 2   48899999999999887766544  88999999


Q ss_pred             eeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          252 NLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       252 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .|++++|.+.  .++ .+..+++|+.|++++|.....
T Consensus       182 ~L~L~~N~i~--~l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          182 NLYLSKNHIS--DLR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             EEECCSSCCC--BCG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             EEECCCCcCC--CCh-hhccCCCCCEEECcCCcccCC
Confidence            9999999664  344 478899999999999876553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1.8e-16  Score=135.37  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=33.3

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc-ccchhhhcccccceeeecc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~  207 (442)
                      ++|+.|+++++.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++ ..|..+..+++|++|++++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            34444444444444433 3444444444444444333322 3344444444444444443 2333344444444444444


Q ss_pred             ccc
Q 013456          208 IHL  210 (442)
Q Consensus       208 ~~~  210 (442)
                      |.+
T Consensus       122 n~i  124 (197)
T 4ezg_A          122 SAH  124 (197)
T ss_dssp             SBC
T ss_pred             Ccc
Confidence            433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.8e-15  Score=127.88  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=115.7

Q ss_pred             ccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCc
Q 013456          245 ENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPN  324 (442)
Q Consensus       245 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  324 (442)
                      +.+++|+.|++++|.+.  .++ .+..+++|+.|++++|....                           ...+..+ ++
T Consensus        41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~---------------------------~~~l~~l-~~   89 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATN---------------------------YNPISGL-SN   89 (197)
T ss_dssp             HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSC---------------------------CGGGTTC-TT
T ss_pred             hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCc---------------------------chhhhcC-CC
Confidence            45667777777766443  333 45566667777776653221                           1123444 78


Q ss_pred             eeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEec
Q 013456          325 LRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIR  404 (442)
Q Consensus       325 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  404 (442)
                      |++|++++|.+++..+..++.+++|+.|++++|.+.+..+.. +..+++|++|++++|..+..++ ....+++|+.|+++
T Consensus        90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred             CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence            999999999988767778999999999999999987655443 7789999999999987677776 56789999999999


Q ss_pred             cCCCCCCCccCCCCCCCcEEEeccccccc
Q 013456          405 NCPKLKMPTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       405 ~c~~l~~p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      +|.+...+ .+..+++|++|++++|++..
T Consensus       168 ~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          168 FDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99887766 78899999999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=1e-15  Score=131.94  Aligned_cols=77  Identities=25%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             EEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchh-hhcccccceeeeccccc
Q 013456          133 VLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHL  210 (442)
Q Consensus       133 ~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~  210 (442)
                      .++++++.+..+|..+  .++|++|++++|.+..+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            4445555555555433  23555666666555555432 45555666666666655554443 34555566666655554


Q ss_pred             c
Q 013456          211 Q  211 (442)
Q Consensus       211 ~  211 (442)
                      .
T Consensus        89 ~   89 (208)
T 2o6s_A           89 Q   89 (208)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=6.2e-16  Score=138.15  Aligned_cols=149  Identities=20%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+.++..++++++.+..++ .+..+++|++|++++|.+..+| .++.+++|++|++++|.++.+|. +..+++|++|++
T Consensus        16 ~~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           16 PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            45666777777777777766 5677788888888888777776 57778888888888888877766 777888888888


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+.+. +.   +.. ++|+.|++.++.....  ..+..+++|+.|++++|.+.  .++ .+..+++|+.|++++|.+
T Consensus        93 ~~N~l~~l-~~---~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~--~~~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           93 NRNRLKNL-NG---IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK--SIV-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CSSCCSCC-TT---CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC--BCG-GGGGCTTCCEEECTTSCC
T ss_pred             CCCccCCc-Cc---ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC--CCh-HHccCCCCCEEECCCCcC
Confidence            88776542 21   222 6677777666655432  34666777777777766543  222 456667777777776655


Q ss_pred             cc
Q 013456          286 FY  287 (442)
Q Consensus       286 ~~  287 (442)
                      ..
T Consensus       163 ~~  164 (263)
T 1xeu_A          163 TN  164 (263)
T ss_dssp             CB
T ss_pred             cc
Confidence            43

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=5.9e-15  Score=145.21  Aligned_cols=184  Identities=17%  Similarity=0.162  Sum_probs=118.0

Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCccccccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGL  232 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~  232 (442)
                      +|++|++++|.+..+|..+.  ++|++|++++|.++.+|   ..+++|++|++++|.+.+ +|.   +..          
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~---l~~----------  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE---LPA----------  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCT----------
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch---hhc----------
Confidence            89999999999988888763  78999999999999888   457899999999887653 221   111          


Q ss_pred             ccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456          233 SIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       233 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  312 (442)
                                      +|+.|++++|.+.  .++.   .+++|+.|++++|.+...+.                      
T Consensus       121 ----------------~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~----------------------  157 (571)
T 3cvr_A          121 ----------------SLKHLDVDNNQLT--MLPE---LPALLEYINADNNQLTMLPE----------------------  157 (571)
T ss_dssp             ----------------TCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSCCCC----------------------
T ss_pred             ----------------CCCEEECCCCcCC--CCCC---cCccccEEeCCCCccCcCCC----------------------
Confidence                            4556666655443  2333   45667777776665432111                      


Q ss_pred             CCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcc-------cEEEecccCCc
Q 013456          313 PGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQL-------RVLKLWVLKEL  385 (442)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l  385 (442)
                              .+++|+.|++++|.+++ ++. +.  ++|+.|++++|.+.. .+.  +..  +|       +.|++++| .+
T Consensus       158 --------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~--~~~--~L~~~~~~L~~L~Ls~N-~l  219 (571)
T 3cvr_A          158 --------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA--VPV--RNHHSEETEIFFRCREN-RI  219 (571)
T ss_dssp             --------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC--CC----------CCEEEECCSS-CC
T ss_pred             --------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh--HHH--hhhcccccceEEecCCC-cc
Confidence                    22677888888887775 444 44  788888888887763 222  221  45       66666664 34


Q ss_pred             ceEEeCCCccccccEEEeccCCCCCC-CccCC
Q 013456          386 KEWTIEEGAMTALEKLEIRNCPKLKM-PTELT  416 (442)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~c~~l~~-p~~l~  416 (442)
                      +.++.....+++|+.|++++|+.... |..+.
T Consensus       220 ~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          220 THIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            45555455566666666666665543 44443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=2.8e-15  Score=133.94  Aligned_cols=150  Identities=20%  Similarity=0.152  Sum_probs=119.7

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+++|++|++++|.+..++ .+..+++|++|++++|.+..+|. ++++++|++|++++|.++.+|....  ++|++|++
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L  113 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL  113 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred             hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence            45788899999988888887 68888899999999988888876 8888999999999998887776443  88999999


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ++|.+.+. +   .++.+++|+.|++.++.....  ..++.+++|+.|++++|.+..  . ..+..+++|+.|++++|..
T Consensus       114 ~~N~l~~~-~---~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          114 DNNELRDT-D---SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CSSCCSBS-G---GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEEEEE
T ss_pred             cCCccCCC-h---hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCCCcc
Confidence            98887642 2   377888899998888876553  368888999999999886652  2 5677888899999988876


Q ss_pred             ccC
Q 013456          286 FYV  288 (442)
Q Consensus       286 ~~~  288 (442)
                      ...
T Consensus       185 ~~~  187 (263)
T 1xeu_A          185 VNE  187 (263)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=3.9e-15  Score=129.21  Aligned_cols=129  Identities=23%  Similarity=0.259  Sum_probs=70.9

Q ss_pred             ceeEEEecCCCCCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l  205 (442)
                      +.|+.|++++|.+..++. .+..+++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            346666666665555544 455566666666666665554 44556666666666666666655544 345666666666


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeec
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNI  259 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  259 (442)
                      ++|.+....+.  .+..+++|+.|++.++......+..+..+++|+.|++++|.
T Consensus       112 ~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          112 NANKINCLRVD--AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEeCHH--HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            66655433222  35555555555555555444444445555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=3.2e-17  Score=162.09  Aligned_cols=203  Identities=18%  Similarity=0.093  Sum_probs=104.6

Q ss_pred             cccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcc
Q 013456          172 GDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLK  251 (442)
Q Consensus       172 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~  251 (442)
                      ..+++|+.|+|++|.++.+|..++.|++|+.|++++|......+.        .+..+     ...+..+..++.+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------ll~~~-----~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL--------LMRAL-----DPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHH-----CTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH--------HHHhc-----ccccCCHHHHHHHHhcc
Confidence            557788888888888888888888888888888866532111110        00001     11122444555566666


Q ss_pred             eee-EEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEE
Q 013456          252 NLG-LICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTL  330 (442)
Q Consensus       252 ~L~-l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l  330 (442)
                      .|+ ++.+.            +.+|+.+.+.+|.+...+.                                ..|+.|++
T Consensus       413 ~L~~l~~n~------------~~~L~~l~l~~n~i~~l~~--------------------------------~~L~~L~L  448 (567)
T 1dce_A          413 AVDPMRAAY------------LDDLRSKFLLENSVLKMEY--------------------------------ADVRVLHL  448 (567)
T ss_dssp             HHCGGGHHH------------HHHHHHHHHHHHHHHHHHH--------------------------------TTCSEEEC
T ss_pred             cCcchhhcc------------cchhhhhhhhcccccccCc--------------------------------cCceEEEe
Confidence            555 33221            1223333333332211100                                23445555


Q ss_pred             eccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCC
Q 013456          331 SLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLK  410 (442)
Q Consensus       331 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  410 (442)
                      ++|.+++ +|. ++.+++|+.|++++|.+. ..+. .++.+++|+.|++++| .++.++ ..+.+++|+.|++++|.+..
T Consensus       449 s~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          449 AHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             TTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             cCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCCCCC
Confidence            5555543 232 555555555555555554 2222 2445555555555554 233344 44555666666666666555


Q ss_pred             C--CccCCCCCCCcEEEeccccccccCCC
Q 013456          411 M--PTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       411 ~--p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      .  |..+..+++|+.|++++|+++.+|+.
T Consensus       523 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            5  55666666666666666666665553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=4.9e-15  Score=128.61  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=82.2

Q ss_pred             eeEEEecCCCCCCCChh--hhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456          130 LLRVLDLEDVYKPVLPE--TIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL  205 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l  205 (442)
                      .+++|++++|.+..++.  .+..+++|++|++++|.+..++. .++++++|++|++++|.++.++.. +..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            45677777776666532  36667777777777777766643 566777777777777777655443 566777777777


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA  260 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  260 (442)
                      ++|.+....+.  .+..+++|+.|++.++......+..+..+++|+.|++++|..
T Consensus       113 s~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          113 RSNRITCVGND--SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTSCCCCBCTT--SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCcCCeECHh--HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            77766644333  356666666666666665555555666666666666666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.54  E-value=1.8e-14  Score=123.96  Aligned_cols=56  Identities=25%  Similarity=0.316  Sum_probs=41.8

Q ss_pred             cceecccccccccCCccccccCCCcEEeecCccccccchh-hhcccccceeeecccccc
Q 013456          154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~  211 (442)
                      -+.++.+++.+..+|..+  .++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   65 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ   65 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC
Confidence            356677777777887655  45788888888888876654 567888888888887665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.9e-14  Score=119.39  Aligned_cols=136  Identities=23%  Similarity=0.236  Sum_probs=102.3

Q ss_pred             hcCceeEEEecCCCCCC--CChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccc-cchhhhcccccce
Q 013456          126 RGYRLLRVLDLEDVYKP--VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRH  202 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~  202 (442)
                      ...++|++|++++|.+.  .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+..+++|++
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            45688999999999887  8888889999999999999999888 778999999999999999996 7777778999999


Q ss_pred             eeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhH----HhhcCCcccccc
Q 013456          203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKIT----NLIQGLTSLESL  278 (442)
Q Consensus       203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L  278 (442)
                      |++++|.+.+. +.                        +..+..+++|+.|++++|.+.  ..+    ..+..+++|+.|
T Consensus       100 L~Ls~N~l~~~-~~------------------------~~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A          100 LNLSGNKLKDI-ST------------------------LEPLKKLECLKSLDLFNCEVT--NLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             EECBSSSCCSS-GG------------------------GGGGSSCSCCCEEECCSSGGG--TSTTHHHHHHTTCSSCCEE
T ss_pred             EeccCCccCcc-hh------------------------HHHHhcCCCCCEEEeeCCcCc--chHHHHHHHHHhCccCcEe
Confidence            99999976532 11                        122344555556666555443  222    356667777777


Q ss_pred             eeeccccccCC
Q 013456          279 RLRSINDFYVP  289 (442)
Q Consensus       279 ~l~~~~~~~~~  289 (442)
                      ++++|.....+
T Consensus       153 ~l~~n~~~~~~  163 (168)
T 2ell_A          153 DGYDREDQEAP  163 (168)
T ss_dssp             TTEETTSCBCC
T ss_pred             cCCCCChhhcc
Confidence            77776655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=2e-14  Score=125.63  Aligned_cols=127  Identities=24%  Similarity=0.270  Sum_probs=63.5

Q ss_pred             ceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchh-hhcccccceeee
Q 013456          129 RLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYL  205 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l  205 (442)
                      ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            4455555555555444 33455555555555555555555432 35555555555555555554443 345555555555


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  258 (442)
                      ++|.+. .+|.  .+..+++|+.|++.++......+..+..+++|+.|++.+|
T Consensus       120 s~N~l~-~lp~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          120 CCNKLT-ELPR--GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CSSCCC-SCCT--TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cCCccc-ccCc--ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            555544 2222  2444455555554444443333333444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=3.7e-14  Score=123.03  Aligned_cols=150  Identities=19%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCC--ccccccCCCcEEeecCccccccch-hhhcccccceeeeccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP--KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDI  208 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~  208 (442)
                      ++++++++.+..+|..+.  ..+++|++++|.+..++  ..++++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            467777777777776553  34577778777777663  236777778888888777776554 5777777888888777


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      .+....+.  .++.+++|++|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus        92 ~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHK--MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGG--GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHh--HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCCc
Confidence            77644332  3677777777777777776666667777777888887777654 334666777777777777776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=2.4e-14  Score=124.29  Aligned_cols=150  Identities=17%  Similarity=0.240  Sum_probs=106.5

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCcccccc-chhhhcccccceeeecccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIH  209 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~  209 (442)
                      +.++++++.+..+|..+.  ++|++|++++|.+..+|. .+..+++|++|+|++|.++.+ |..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            467777777777776554  577888888877777754 567778888888888877755 6667778888888888877


Q ss_pred             ccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          210 LQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       210 ~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      +.. ++.. .+..+++|+.|++.++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus        92 l~~-l~~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITE-LPKS-LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCC-CCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCc-cCHh-HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence            763 3322 4567778888887777777666677777788888888877654 333445667777888888776543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.3e-14  Score=117.84  Aligned_cols=128  Identities=20%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             hcCceeEEEecCCCCCC--CChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccc-cchhhhcccccce
Q 013456          126 RGYRLLRVLDLEDVYKP--VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRH  202 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~  202 (442)
                      ...++|+.|++++|.+.  .+|..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+..+++|++
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            34688999999999887  7888889999999999999999888 678899999999999999996 7887888999999


Q ss_pred             eeeccccccccccCCCCCCCCcccccccccccCCCCCch---hhhccccCcceeeE
Q 013456          203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPL---NWLENLSDLKNLGL  255 (442)
Q Consensus       203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~---~~l~~l~~L~~L~l  255 (442)
                      |++++|.+.+. +.+..++.+++|+.|++.++......+   ..+..+++|+.|++
T Consensus        93 L~ls~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSH-HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCCh-HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            99999987642 111135555555555555544332222   23444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=3.2e-14  Score=133.38  Aligned_cols=123  Identities=20%  Similarity=0.225  Sum_probs=86.4

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCCcc-cc-ccCCCcEEeecCccccccch-hhhcccccceeeeccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LG-DLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDI  208 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~-~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~  208 (442)
                      ++++++++.+..+|..+.  ..+++|+|++|.+..++.. +. ++++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            688999988888887664  4688999999999888654 55 89999999999999997764 5888999999999998


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  258 (442)
                      .+....+.  .+..+++|+.|++.++......+..+..+++|+.|++++|
T Consensus        99 ~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           99 HLHTLDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             CCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCCcCCHH--HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            87643222  3556666666665555444333334444444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=1.5e-14  Score=147.51  Aligned_cols=119  Identities=23%  Similarity=0.246  Sum_probs=97.4

Q ss_pred             hhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceee
Q 013456          125 IRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLY  204 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  204 (442)
                      +..++.|++|+|++|.+..+|..+..+++|++|+|++|.+..+|..++++++|++|+|++|.++.+|..++.|++|++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            45688899999999988888888888999999999999998899889999999999999999999999999999999999


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCCCCCchhhhcc
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLEN  246 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~  246 (442)
                      +++|.+. .+|.  .++.+++|+.|++.++...+..+..+..
T Consensus       300 L~~N~l~-~lp~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          300 FFDNMVT-TLPW--EFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCSSCCC-CCCS--STTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCCCCC-ccCh--hhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            9998775 4443  4777888888877777766555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=3.6e-14  Score=133.02  Aligned_cols=173  Identities=17%  Similarity=0.144  Sum_probs=136.6

Q ss_pred             eeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhh-hh-cccccceecccccccccCC-cccccc
Q 013456           98 HSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPET-IG-KLQLLRYVGLRRTFIDSIP-KSLGDL  174 (442)
Q Consensus        98 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~-~l~~L~~L~L~~~~i~~lp-~~~~~l  174 (442)
                      +++...++....+|...             .+.+++|+|++|.+..++.. +. ++++|++|+|++|.+..++ ..+.++
T Consensus        21 ~~l~c~~~~l~~iP~~~-------------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-------------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-------------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CEEEeCCCCcCccCccC-------------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            56666666666666531             35589999999999888764 55 8999999999999999886 468999


Q ss_pred             CCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhh---ccccCc
Q 013456          175 HSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWL---ENLSDL  250 (442)
Q Consensus       175 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l---~~l~~L  250 (442)
                      ++|++|+|++|.++.++. .+..+++|++|++++|.+....+.  .+..+++|+.|++.++.........+   ..+++|
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN--AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH--HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            999999999999997765 578999999999999998755443  58999999999999988766544444   679999


Q ss_pred             ceeeEEeeccccchhHHhhcCCcc--cccceeeccccc
Q 013456          251 KNLGLICNIASLGKITNLIQGLTS--LESLRLRSINDF  286 (442)
Q Consensus       251 ~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  286 (442)
                      +.|++++|.+. ...+..+..++.  ++.|++.+|...
T Consensus       166 ~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          166 MLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999999765 333455666665  488999887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=5.1e-14  Score=130.27  Aligned_cols=99  Identities=13%  Similarity=-0.025  Sum_probs=45.4

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCccc-EEEecccCCcceEE-eCCCccccccE
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR-VLKLWVLKELKEWT-IEEGAMTALEK  400 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~~~~L~~  400 (442)
                      ++|+.++++.|.++......|..|++|+.+++.+| + ..+....+.++++|+ .+.+.+  .++.+. ..+.++++|+.
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence            45555555555444333344555555555555444 1 223333344555555 555543  333332 23334455555


Q ss_pred             EEeccCCCCCC-CccCCCCCCCcEEE
Q 013456          401 LEIRNCPKLKM-PTELTKLSNLKELT  425 (442)
Q Consensus       401 L~l~~c~~l~~-p~~l~~l~~L~~L~  425 (442)
                      +++.++....+ +..+.++++|+.|+
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            55544444444 33444555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=1.3e-13  Score=120.40  Aligned_cols=131  Identities=20%  Similarity=0.202  Sum_probs=82.2

Q ss_pred             ccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChh-hhhcccccceecccccccccCCcc-cc
Q 013456           95 EYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIPKS-LG  172 (442)
Q Consensus        95 ~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp~~-~~  172 (442)
                      ++++.|.+.++....++...|          ..+++|++|++++|.+..+|. .+..+++|++|+|++|.+..+|.. +.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~----------~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVF----------DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD  109 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT----------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCEEEcCCCccCccCHHHh----------hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence            666666666665554443322          346667777777766666654 356667777777777766666543 46


Q ss_pred             ccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCC
Q 013456          173 DLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKK  237 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~  237 (442)
                      .+++|++|++++|.++.+|..+..+++|++|++++|.+....+  ..+..+++|+.|++.++...
T Consensus       110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCBC
T ss_pred             cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCCcc
Confidence            6677777777777777777666777777777777776653222  14566667777666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=8e-14  Score=116.52  Aligned_cols=133  Identities=17%  Similarity=0.136  Sum_probs=97.2

Q ss_pred             hhhcCceeEEEecCCCCCCCChhhhhccc-ccceecccccccccCCccccccCCCcEEeecCccccccchhh-hcccccc
Q 013456          124 AIRGYRLLRVLDLEDVYKPVLPETIGKLQ-LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSI-WKVKTLR  201 (442)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~  201 (442)
                      .+..+.+|++|++++|.+..++. +..+. +|++|++++|.+..+ ..++.+++|++|++++|.++.+|..+ ..+++|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            34567889999999998888865 44544 999999999999888 57889999999999999999888665 8899999


Q ss_pred             eeeeccccccccccCCCCCCCCcccccccccccCCCCCchh----hhccccCcceeeEEeecc
Q 013456          202 HLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLN----WLENLSDLKNLGLICNIA  260 (442)
Q Consensus       202 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~  260 (442)
                      +|++++|.+.. ++.-..+..+++|+.|++.++.... .+.    .+..+++|+.|+++.|..
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999998753 3321135566666666666655432 222    256666666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=9.8e-14  Score=115.05  Aligned_cols=133  Identities=19%  Similarity=0.117  Sum_probs=87.6

Q ss_pred             cccceecccccccc--cCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456          152 QLLRYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL  229 (442)
Q Consensus       152 ~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L  229 (442)
                      ++|++|++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.                  
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~------------------   84 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF------------------   84 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCC------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCc------------------
Confidence            45666666666655  5555555666666666666665554 44555555666666555443                  


Q ss_pred             cccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456          230 WGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL  309 (442)
Q Consensus       230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  309 (442)
                              ...+..+..+++|+.|++++|.+.....+..+..+++|+.|++++|.....+.. ....+..+++|+.|++.
T Consensus        85 --------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           85 --------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY-RESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             --------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH-HHHHHTTCSSCCEETTE
T ss_pred             --------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH-HHHHHHhCccCcEecCC
Confidence                    334455667889999999988664222336788999999999999987765540 01236678999999998


Q ss_pred             ccc
Q 013456          310 GRL  312 (442)
Q Consensus       310 ~~~  312 (442)
                      ++.
T Consensus       156 ~n~  158 (168)
T 2ell_A          156 DRE  158 (168)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.44  E-value=1.5e-13  Score=116.43  Aligned_cols=126  Identities=20%  Similarity=0.207  Sum_probs=84.3

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCCcc--ccccCCCcEEeecCcccccc-chhhhcccccceeeeccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS--LGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~--~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~  208 (442)
                      ++++++++.++.+|..+..  +|++|++++|.+..++..  ++.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            5677777777777765543  777777777777776543  67777777777777777755 566777777777777777


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccc
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS  261 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  261 (442)
                      .+.+..+.  .++.+++|+.|++.++......+..+..+++|+.|++++|...
T Consensus        89 ~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNK--MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSS--SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHH--HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            76644332  3566666666666666655555555666666666666666443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=5.5e-13  Score=113.01  Aligned_cols=125  Identities=22%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHL  210 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~  210 (442)
                      ++++++++.+..+|..+.  ++|++|++++|.+..+|..+.++++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            456666666666665442  45666666666666666666666666666666666665543 355666666666666665


Q ss_pred             cccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecc
Q 013456          211 QMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA  260 (442)
Q Consensus       211 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  260 (442)
                      ....+.  .+..+++|+.|++.++......+..+..+++|+.|++++|..
T Consensus        91 ~~i~~~--~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           91 RCIPPR--TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CBCCTT--TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEeCHH--HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            533222  355566666666655555444444456666777777766644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=2.6e-13  Score=138.28  Aligned_cols=118  Identities=23%  Similarity=0.219  Sum_probs=100.5

Q ss_pred             CCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccC
Q 013456           88 PSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI  167 (442)
Q Consensus        88 ~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l  167 (442)
                      ...+..++.|+.|.+.++....++..           +.++++|++|+|++|.+..+|..++++++|++|+|++|.+..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l  285 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISAN-----------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL  285 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGG-----------GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChh-----------hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence            45567788999999998877666543           1358999999999999999999999999999999999999999


Q ss_pred             CccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccC
Q 013456          168 PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQK  216 (442)
Q Consensus       168 p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~  216 (442)
                      |..++++++|++|+|++|.++.+|..++.+++|++|++++|.+.+..|.
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            9999999999999999999999999999999999999999998765543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=2.1e-13  Score=110.60  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             cccccceecccccccc--cCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456          150 KLQLLRYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR  227 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~  227 (442)
                      ..++|++|++++|.+.  .+|..++.+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|.  .++.+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV--LAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH--HHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH--HhhhCCCCC
Confidence            3578888899888887  7788788888899999988888877 6677888888888888877653332  244566666


Q ss_pred             cccccccCCCCC-chhhhccccCcceeeEEeeccccchhH---HhhcCCcccccceee
Q 013456          228 TLWGLSIGKKSP-PLNWLENLSDLKNLGLICNIASLGKIT---NLIQGLTSLESLRLR  281 (442)
Q Consensus       228 ~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~  281 (442)
                      .|++.++..... .+..+..+++|+.|++++|.+. ...+   ..+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            666666554432 2245566666666666665443 1111   244555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=4.8e-14  Score=120.31  Aligned_cols=116  Identities=21%  Similarity=0.211  Sum_probs=87.5

Q ss_pred             CCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCC
Q 013456          140 YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFV  219 (442)
Q Consensus       140 ~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~  219 (442)
                      .++.+|..+..+++|++|++++|.+..+| .++++++|++|++++|.++.+|..+..+++|++|++++|.+.+ ++   .
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~---~  110 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS---G  110 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH---H
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC---c
Confidence            45556668889999999999999888888 7888999999999999998888888888999999999987764 23   2


Q ss_pred             CCCCcccccccccccCCCCCc-hhhhccccCcceeeEEeecc
Q 013456          220 KPSLTNLRTLWGLSIGKKSPP-LNWLENLSDLKNLGLICNIA  260 (442)
Q Consensus       220 ~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~  260 (442)
                      ++.+++|+.|++.++...... ...+..+++|+.|++++|..
T Consensus       111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            556666777766666554322 13566677777777776644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.35  E-value=8.7e-13  Score=111.76  Aligned_cols=128  Identities=19%  Similarity=0.093  Sum_probs=106.8

Q ss_pred             cceecccccccccCCccccccCCCcEEeecCccccccchh--hhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456          154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKS--IWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG  231 (442)
Q Consensus       154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~  231 (442)
                      -++++++++.++.+|..+..  +|++|++++|.++.++..  +..+++|++|++++|.+.+..+.  .++.+++|+.|++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN--AFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh--HcCCcccCCEEEC
Confidence            37899999999999987754  899999999999988764  88999999999999998865554  5888999999999


Q ss_pred             cccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          232 LSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      .++......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence            888877666666888899999999988765 555677778888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=1.6e-12  Score=128.55  Aligned_cols=151  Identities=21%  Similarity=0.220  Sum_probs=111.2

Q ss_pred             hhcCceeEEEe-cCCCCCCCChh------hhhc--ccccceecccccccccCCccccccCCCcEEeecCccccccchhhh
Q 013456          125 IRGYRLLRVLD-LEDVYKPVLPE------TIGK--LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIW  195 (442)
Q Consensus       125 ~~~~~~L~~L~-l~~~~~~~l~~------~l~~--l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~  195 (442)
                      +..+++|+.|+ ++.+.+..++.      .+..  ...|++|++++|.+..+|. ++.+++|++|++++|.++.+|..++
T Consensus       405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~  483 (567)
T 1dce_A          405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA  483 (567)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred             HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh
Confidence            45677777777 55443333321      1222  1258889999998888886 8889999999999999999999999


Q ss_pred             cccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCc-hhhhccccCcceeeEEeeccccc--hhHHhhcCC
Q 013456          196 KVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPP-LNWLENLSDLKNLGLICNIASLG--KITNLIQGL  272 (442)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l  272 (442)
                      .+++|+.|++++|.+.+ +|   .++.+++|+.|++.++...+.. +..++.+++|+.|++++|.+...  .....+..+
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD---GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             cCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence            99999999999998875 44   4888999999998888877665 88899999999999998865411  122233446


Q ss_pred             ccccccee
Q 013456          273 TSLESLRL  280 (442)
Q Consensus       273 ~~L~~L~l  280 (442)
                      ++|+.|++
T Consensus       560 p~L~~L~l  567 (567)
T 1dce_A          560 PSVSSILT  567 (567)
T ss_dssp             TTCSEEEC
T ss_pred             cccCccCC
Confidence            77777753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=108.87  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=104.4

Q ss_pred             cceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456          154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS  233 (442)
Q Consensus       154 L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~  233 (442)
                      -++++++++.+..+|..+.  ++|++|++++|.++.+|..+..+++|++|++++|.+....+.  .+..+++|+.|++.+
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ--SFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh--HccCCCCCCEEECCC
Confidence            3688999999999998764  689999999999999999999999999999999998754433  588889999999888


Q ss_pred             cCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          234 IGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       234 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      +......+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|...
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            8877777777888888888888888654 333345677788888888877543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=2.6e-14  Score=121.97  Aligned_cols=108  Identities=21%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence            45788888888888777777 777888888888888888888877777788888888888888776 5778888888888


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCC
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK  236 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~  236 (442)
                      ++|.+....+.+ .+..+++|+.|++.++..
T Consensus       123 ~~N~i~~~~~~~-~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          123 SNNKITNWGEID-KLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEECCCHHHHH-HHTTTTTCSEEEECSCHH
T ss_pred             CCCcCCchhHHH-HHhcCCCCCEEEecCCcc
Confidence            888776422211 366778888888776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=1.7e-12  Score=108.41  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=100.6

Q ss_pred             ccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcc
Q 013456           91 KKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS  170 (442)
Q Consensus        91 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~  170 (442)
                      +..+.+++.|.+.++....++.  +..         ..++|++|++++|.+..+ ..+..+++|++|++++|.+..+|..
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~--~~~---------~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN--LGA---------TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC--GGG---------GTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             cCCcCCceEEEeeCCCCchhHH--hhh---------cCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence            4456778888888776554432  111         134899999999888777 6788889999999999999888765


Q ss_pred             c-cccCCCcEEeecCccccccch--hhhcccccceeeeccccccccccCC--CCCCCCcccccccccccCC
Q 013456          171 L-GDLHSLETLDMKHTNITSLPK--SIWKVKTLRHLYLNDIHLQMSVQKP--FVKPSLTNLRTLWGLSIGK  236 (442)
Q Consensus       171 ~-~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~--~~~~~l~~L~~L~~~~~~~  236 (442)
                      + +.+++|++|++++|.+..+|.  .+..+++|++|++++|.+... +..  ..++.+++|+.|++..+..
T Consensus        83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence            5 889999999999999988887  788899999999999987632 210  0267788899888776643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=5.8e-12  Score=116.37  Aligned_cols=281  Identities=13%  Similarity=0.034  Sum_probs=135.6

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhc-CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-c
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRG-YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-S  170 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~  170 (442)
                      ...+++.|.+.+....    ..+.       .+.. +++|++|||++|.+......-+.++.++++.+..+   .+|+ .
T Consensus        23 ~~~~l~~L~l~g~i~~----~~~~-------~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~a   88 (329)
T 3sb4_A           23 EANSITHLTLTGKLNA----EDFR-------HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYA   88 (329)
T ss_dssp             HHHHCSEEEEEEEECH----HHHH-------HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTT
T ss_pred             hhCceeEEEEeccccH----HHHH-------HHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHH
Confidence            5678889988876321    1122       2233 78899999998877622111112222344444433   2322 3


Q ss_pred             ccc--------cCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCccccccccccc----CCC
Q 013456          171 LGD--------LHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSI----GKK  237 (442)
Q Consensus       171 ~~~--------l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~----~~~  237 (442)
                      |.+        +++|+.|+|.. .++.++. .+..|++|+.+++..|.+.. ++.. .+..+.++..+.....    ...
T Consensus        89 F~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~-aF~~~~~l~~l~~~~~~~~~~~~  165 (329)
T 3sb4_A           89 FSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPE-ALADSVTAIFIPLGSSDAYRFKN  165 (329)
T ss_dssp             TEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTT-SSCTTTCEEEECTTCTHHHHTST
T ss_pred             hcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchh-hhcCCCceEEecCcchhhhhccc
Confidence            445        77777777777 6666654 35667777777777766542 2222 3455555544432220    000


Q ss_pred             CCchhhhccccCcc-eeeEEeeccccchhHHhh----cCCcccccceeeccccccCCcccccccc-CCcCCCceEEeccc
Q 013456          238 SPPLNWLENLSDLK-NLGLICNIASLGKITNLI----QGLTSLESLRLRSINDFYVPSDLAIGSL-NNHKELKELYLLGR  311 (442)
Q Consensus       238 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~  311 (442)
                      ......+..+.+|+ .+.+...    ..++..+    ....+++.+.+.++-...     .+..+ ..+++|+.+++.++
T Consensus       166 ~i~~~~f~~~~~L~~~i~~~~~----~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-----~~~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          166 RWEHFAFIEGEPLETTIQVGAM----GKLEDEIMKAGLQPRDINFLTIEGKLDNA-----DFKLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             TTTTSCEEESCCCEEEEEECTT----CCHHHHHHHTTCCGGGCSEEEEEECCCHH-----HHHHHHHHCTTCCEEECTTB
T ss_pred             cccccccccccccceeEEecCC----CcHHHHHhhcccCccccceEEEeeeecHH-----HHHHHHHhcCCCeEEECCCC
Confidence            11111123333333 2222111    1111111    112233333333211000     00000 01344555555443


Q ss_pred             cCC--CcccccCCCceeEEEEeccCCCCCCcccccCCCCCc-EEEeCcccccCcccccCCCCCCcccEEEecccCCcceE
Q 013456          312 LPG--PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELK-ALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW  388 (442)
Q Consensus       312 ~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  388 (442)
                      ...  +.....-+.+|+.+++..+ ++......|..|++|+ .+.+.+ .+. .+....+.++++|+.+++.++ .++.+
T Consensus       237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n-~i~~I  312 (329)
T 3sb4_A          237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGD-KITTL  312 (329)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSS-CCCEE
T ss_pred             CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCC-ccCcc
Confidence            110  1111122256777777665 4444455677788888 888866 332 334445777888888888663 45555


Q ss_pred             Ee-CCCccccccEEEe
Q 013456          389 TI-EEGAMTALEKLEI  403 (442)
Q Consensus       389 ~~-~~~~~~~L~~L~l  403 (442)
                      .. .+.++++|+.++.
T Consensus       313 ~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          313 GDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTTTCTTCCCCEEEC
T ss_pred             chhhhcCCcchhhhcc
Confidence            43 4556777777753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=1.3e-11  Score=103.07  Aligned_cols=127  Identities=24%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             eEEEecCCCCCCCChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCccccccchh-hhcccccceeeeccc
Q 013456          131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDI  208 (442)
Q Consensus       131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~  208 (442)
                      .+.++++++.+..+|..+.  ++|++|++++|.+..+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3455666666655554332  4666666666666655433 45666666666666666655543 356666666666666


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccc
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS  261 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  261 (442)
                      .+....+.  .++.+++|+.|++.++......+..+..+++|+.|++++|...
T Consensus        87 ~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNG--VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHH--HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            65532221  3455566666665555544333333455666666666666443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=6.7e-11  Score=98.71  Aligned_cols=112  Identities=19%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             CCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEe-CCCccccccE
Q 013456          322 PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTI-EEGAMTALEK  400 (442)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  400 (442)
                      +++|+.|++++|.+++..+..++.+++|+.|++++|.+.+. +...+..+++|++|++++|. ++.++. ....+++|+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCE
Confidence            47889999999988866666788899999999999988643 33336789999999999864 444443 3467899999


Q ss_pred             EEeccCCCCCCCcc-CCCCCCCcEEEeccccccccC
Q 013456          401 LEIRNCPKLKMPTE-LTKLSNLKELTLVKKVLKMKP  435 (442)
Q Consensus       401 L~l~~c~~l~~p~~-l~~l~~L~~L~l~~n~l~~~p  435 (442)
                      |++++|.+..+|.. +..+++|++|++++|++...+
T Consensus       105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999988877544 578999999999999886644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.15  E-value=7.6e-11  Score=97.89  Aligned_cols=99  Identities=20%  Similarity=0.300  Sum_probs=57.9

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeeecccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIH  209 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~  209 (442)
                      +.++++++.+..+|..+.  ++|++|++++|.+..+ |..++++++|++|+|++|.++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            456666666666666543  5666666666666665 44566666666666666666666654 3566666666666666


Q ss_pred             ccccccCCCCCCCCccccccccccc
Q 013456          210 LQMSVQKPFVKPSLTNLRTLWGLSI  234 (442)
Q Consensus       210 ~~~~~~~~~~~~~l~~L~~L~~~~~  234 (442)
                      +... +.. .+..+++|+.|++.++
T Consensus        93 l~~l-~~~-~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           93 LKSI-PRG-AFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCCC-CTT-TTTTCTTCSEEECCSS
T ss_pred             ccee-CHH-HhccccCCCEEEeCCC
Confidence            5522 211 2444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=8.1e-11  Score=97.41  Aligned_cols=102  Identities=24%  Similarity=0.291  Sum_probs=72.0

Q ss_pred             eeEEEecCCCCCCCChhhhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchh-hhcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~  207 (442)
                      ..++++++++.+..+|..+.  ++|++|++++|.+..+ |..++++++|++|+|++|+++.+|.. +..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35678888888888877653  6788888888888777 55678888888888888888877765 46788888888888


Q ss_pred             ccccccccCCCCCCCCcccccccccccC
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      |.+....+.  .+..+++|+.|++.++.
T Consensus        88 N~l~~~~~~--~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           88 NQLKSIPRG--AFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SCCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred             CccCEeCHH--HhcCCCCCCEEEeCCCC
Confidence            876633221  35555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=1.3e-10  Score=96.42  Aligned_cols=101  Identities=23%  Similarity=0.288  Sum_probs=85.5

Q ss_pred             eeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCC-hhhhhcccccceecccccccccCCcc-ccccC
Q 013456           98 HSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVL-PETIGKLQLLRYVGLRRTFIDSIPKS-LGDLH  175 (442)
Q Consensus        98 r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~  175 (442)
                      +.+.+.++....+|...             .++|++|++++|.+..+ |..+.++++|++|+|++|.+..+|.. +++++
T Consensus        15 ~~l~~~~n~l~~iP~~~-------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT   81 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cEEEeCCCCCCccCCCc-------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence            45666666666666531             37799999999999888 55789999999999999999999876 58999


Q ss_pred             CCcEEeecCccccccchh-hhcccccceeeecccccc
Q 013456          176 SLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       176 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~  211 (442)
                      +|++|+|++|.++.+|.. +..+++|++|++++|.+.
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            999999999999988876 889999999999999765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=4.7e-10  Score=92.77  Aligned_cols=105  Identities=24%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG  231 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~  231 (442)
                      ..+.++++++.+..+|..+.  ++|++|++++|.++.+ |..+.++++|++|++++|.+... +.. .+..+++|+.|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~-~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAG-VFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTT-TTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-Chh-hccCCCCCCEEEC
Confidence            46889999999999998774  8999999999999977 56688999999999999998743 322 4688999999999


Q ss_pred             cccCCCCCchhhhccccCcceeeEEeeccc
Q 013456          232 LSIGKKSPPLNWLENLSDLKNLGLICNIAS  261 (442)
Q Consensus       232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  261 (442)
                      .++......+..+..+++|+.|++++|...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            888877666666888889999999888553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.04  E-value=5.1e-09  Score=98.90  Aligned_cols=241  Identities=11%  Similarity=0.055  Sum_probs=127.3

Q ss_pred             eeEEEecCCCCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  207 (442)
                      +|+.+.+.++ +..++. +|.++ +|+.+.+.. .+..++ ..|.++++|+.+++..|.++.++.....+.+|+.+.+..
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~  212 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV  212 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence            5788887755 444543 56564 688888875 566664 457788888888888888888877766678888888875


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      + +. .++.. .+.++++|+.+.+... ........|.+ .+|+.+.+..+-.  .--..++.++++|+.+.+.++....
T Consensus       213 ~-l~-~I~~~-aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~--~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          213 T-LK-EIGSQ-AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVT--NIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             T-CC-EECTT-TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCC--EECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             c-hh-eehhh-HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCcc--EEChhHhhCCCCCCEEEeCCccccC
Confidence            4 22 23322 5667777777765432 11111223333 4566666643211  1123445556666666665543321


Q ss_pred             CC-ccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456          288 VP-SDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC  366 (442)
Q Consensus       288 ~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  366 (442)
                      .+ ....-.++..+                      ++|+.+.+.. .++......|..|.+|+.+.+..+ +. .+...
T Consensus       286 ~~~~~I~~~aF~~c----------------------~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~  340 (401)
T 4fdw_A          286 DPEAMIHPYCLEGC----------------------PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFS  340 (401)
T ss_dssp             CTTCEECTTTTTTC----------------------TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTT
T ss_pred             CcccEECHHHhhCC----------------------ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHH
Confidence            00 01111223334                      4455555542 233233345566666666666443 21 22233


Q ss_pred             CCCCCCcccEEEecccCCcceEEeCCCccc-cccEEEeccC
Q 013456          367 GNGGFPQLRVLKLWVLKELKEWTIEEGAMT-ALEKLEIRNC  406 (442)
Q Consensus       367 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~c  406 (442)
                      .+.++ +|+.+.+.++..-......+.+++ .++.|.+-..
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            35555 666666666432211112222332 4556665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=1.2e-08  Score=96.33  Aligned_cols=264  Identities=9%  Similarity=0.057  Sum_probs=152.3

Q ss_pred             ccccceecccccccccCCc-cccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456          151 LQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL  229 (442)
Q Consensus       151 l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L  229 (442)
                      +..++.+.+.. .++.++. .|.++ +|+.+.+..+ ++.++.....-.+|+.+.+.. .+. .++.. .+..+++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~-aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKED-IFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSS-TTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHH-HhhCcccCCee
Confidence            35566666653 3556643 45554 7999998765 766665433225799998875 232 23322 57888888888


Q ss_pred             cccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456          230 WGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL  309 (442)
Q Consensus       230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  309 (442)
                      ++..+.........+. ..+|+.+.+..+-.  .--..++.++++|+.+.+..+ ......    .++.. .+|+.+.+.
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~--~I~~~aF~~~~~L~~l~l~~~-l~~I~~----~aF~~-~~L~~i~lp  256 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVTLK--EIGSQAFLKTSQLKTIEIPEN-VSTIGQ----EAFRE-SGITTVKLP  256 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTTCC--EECTTTTTTCTTCCCEECCTT-CCEECT----TTTTT-CCCSEEEEE
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCchh--eehhhHhhCCCCCCEEecCCC-ccCccc----ccccc-CCccEEEeC
Confidence            8765544333333344 46788877764311  222345677788888887653 222222    23444 567777775


Q ss_pred             cccCC-CcccccCCCceeEEEEeccCCC-----CCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccC
Q 013456          310 GRLPG-PLKLHELPPNLRIFTLSLSYLS-----EDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       310 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (442)
                      ..... ......-+++|+.+.+..+...     ......|..|++|+.+.+.++ +. .+....+.++++|+.+.+..  
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~--  332 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPA--  332 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECT--
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECc--
Confidence            44321 1111222367777777766543     123445677777777777632 22 33334466777777777754  


Q ss_pred             CcceEE-eCCCccccccEEEeccCCCCCC-CccCCCCC-CCcEEEecccccccc
Q 013456          384 ELKEWT-IEEGAMTALEKLEIRNCPKLKM-PTELTKLS-NLKELTLVKKVLKMK  434 (442)
Q Consensus       384 ~l~~~~-~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~-~L~~L~l~~n~l~~~  434 (442)
                      .++.+. ..+.++ +|+.+.+.++....+ +..+..++ +++.|.+..+.+...
T Consensus       333 ~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y  385 (401)
T 4fdw_A          333 NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKY  385 (401)
T ss_dssp             TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred             cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHh
Confidence            244443 233455 777777777766555 44455563 577777777665443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.82  E-value=1e-07  Score=90.18  Aligned_cols=309  Identities=12%  Similarity=0.025  Sum_probs=164.7

Q ss_pred             CCCCCccccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhhhcccccceeccccccc
Q 013456           86 ITPSDKKQFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETIGKLQLLRYVGLRRTFI  164 (442)
Q Consensus        86 ~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~L~~~~i  164 (442)
                      +...+|.++.+|+.+.+.+.. ..+...          +|.+|.+|+.+++.++ +..++ ..+.++..|+.+.+..+ +
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~i-~~I~~~----------aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l  128 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPSTV-REIGEF----------AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L  128 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTTC-CEECTT----------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred             hHHHHhhCCCCceEEEeCCCc-cCcchh----------HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence            344566666666666554321 112221          2344666666666543 33333 24556666666555432 2


Q ss_pred             ccCC-ccccccCCCcEEeecCcccccc-chhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchh
Q 013456          165 DSIP-KSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLN  242 (442)
Q Consensus       165 ~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~  242 (442)
                      ..+. ..+.++..++.....  .+..+ ...+.++.+|+.+.+..+..  .++.. .+..+.+|+.+.+... .......
T Consensus       129 ~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~-~F~~c~~L~~i~l~~~-~~~I~~~  202 (394)
T 4fs7_A          129 KSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSME--TLHNG-LFSGCGKLKSIKLPRN-LKIIRDY  202 (394)
T ss_dssp             CEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTCC--EECTT-TTTTCTTCCBCCCCTT-CCEECTT
T ss_pred             eeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCccc--eeccc-cccCCCCceEEEcCCC-ceEeCch
Confidence            3332 223333322222221  12212 23456777788877765421  22222 4666777777665322 1111223


Q ss_pred             hhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCC-CcccccC
Q 013456          243 WLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPG-PLKLHEL  321 (442)
Q Consensus       243 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~  321 (442)
                      .+..+..|+.+.+..+...   +........+|+.+.+... ...    .....+..+..++.+.+..+... .......
T Consensus       203 ~F~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~~i~ip~~-~~~----i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~  274 (394)
T 4fs7_A          203 CFAECILLENMEFPNSLYY---LGDFALSKTGVKNIIIPDS-FTE----LGKSVFYGCTDLESISIQNNKLRIGGSLFYN  274 (394)
T ss_dssp             TTTTCTTCCBCCCCTTCCE---ECTTTTTTCCCCEEEECTT-CCE----ECSSTTTTCSSCCEEEECCTTCEECSCTTTT
T ss_pred             hhccccccceeecCCCceE---eehhhcccCCCceEEECCC-cee----cccccccccccceeEEcCCCcceeecccccc
Confidence            4556666666665543222   1122223456666655431 111    11234556777777777654321 1111122


Q ss_pred             CCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-eCCCccccccE
Q 013456          322 PPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEK  400 (442)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~  400 (442)
                      +..++.+......+.   ...+..+.+|+.+.+..+ + ..+....+..+++|+.+.+.+  .++.+. ..+.++++|+.
T Consensus       275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~  347 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSN  347 (394)
T ss_dssp             CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCE
T ss_pred             ccccceeccCceeec---cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCE
Confidence            356666666544322   235677889999998654 2 233444577889999999864  355654 34567889999


Q ss_pred             EEeccCCCCCC-CccCCCCCCCcEEEeccc
Q 013456          401 LEIRNCPKLKM-PTELTKLSNLKELTLVKK  429 (442)
Q Consensus       401 L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n  429 (442)
                      +.+..+ ...+ ...+.+|.+|+++.+..+
T Consensus       348 i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          348 INFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            999765 3444 667889999999999765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.82  E-value=7.8e-10  Score=103.45  Aligned_cols=134  Identities=18%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             cccceecccccccccC--CccccccCCCcEEeecCcccccc-chhh-----hcccccceeeecccccccccc--CCCCCC
Q 013456          152 QLLRYVGLRRTFIDSI--PKSLGDLHSLETLDMKHTNITSL-PKSI-----WKVKTLRHLYLNDIHLQMSVQ--KPFVKP  221 (442)
Q Consensus       152 ~~L~~L~L~~~~i~~l--p~~~~~l~~L~~L~L~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~~~~~~--~~~~~~  221 (442)
                      ++|++|+|++|.++..  ..-...+++|++|+|++|.++.. ...+     ...++|++|++++|.+.....  ....+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4555555555554321  11112344555555555555421 1111     123455555555555432100  000122


Q ss_pred             CCcccccccccccCCCC----CchhhhccccCcceeeEEeeccccc---hhHHhhcCCcccccceeecccc
Q 013456          222 SLTNLRTLWGLSIGKKS----PPLNWLENLSDLKNLGLICNIASLG---KITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       222 ~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ..++|++|++.++....    .+...+...++|+.|++++|.++..   .++..+...++|+.|++++|.+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            33444444444443321    1233445555666666666654421   2334444456666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=1.3e-08  Score=94.65  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=38.4

Q ss_pred             ecCCC-CCCCChhhhhcccccceecccc-cccccCC-ccccccCCCcEEeecCccccccch-hhhcccccceeeeccccc
Q 013456          135 DLEDV-YKPVLPETIGKLQLLRYVGLRR-TFIDSIP-KSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHL  210 (442)
Q Consensus       135 ~l~~~-~~~~l~~~l~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~  210 (442)
                      +++++ .+..+|. +..+++|++|+|++ |.+..+| ..|+++++|++|+|++|.++.+|. .+.++++|++|++++|.+
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            44444 4555555 55555555555553 5555444 234555555555555555554332 344555555555555554


Q ss_pred             c
Q 013456          211 Q  211 (442)
Q Consensus       211 ~  211 (442)
                      .
T Consensus        93 ~   93 (347)
T 2ifg_A           93 E   93 (347)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.78  E-value=2.6e-07  Score=87.31  Aligned_cols=95  Identities=14%  Similarity=0.016  Sum_probs=40.2

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-eCCCccccccEE
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKL  401 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L  401 (442)
                      .+|+.+.+..+ ++......|..+.+|+.+.+..+ + ..+....+.++.+|+.+.+..+  ++.+. ..+.++++|+.+
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEE
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEE
Confidence            45555555432 22122334555555555555322 1 1222223445555555555431  33332 123345555555


Q ss_pred             EeccCCCCCCCccCCCCCCCcE
Q 013456          402 EIRNCPKLKMPTELTKLSNLKE  423 (442)
Q Consensus       402 ~l~~c~~l~~p~~l~~l~~L~~  423 (442)
                      ++..+- ......+.++++|+.
T Consensus       372 ~lp~~~-~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          372 ELPKRL-EQYRYDFEDTTKFKW  392 (394)
T ss_dssp             EEEGGG-GGGGGGBCTTCEEEE
T ss_pred             EECCCC-EEhhheecCCCCCcE
Confidence            554331 111333445555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.76  E-value=7.3e-09  Score=96.28  Aligned_cols=87  Identities=18%  Similarity=0.155  Sum_probs=73.5

Q ss_pred             hcCceeEEEecCC-CCCCCChh-hhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccce
Q 013456          126 RGYRLLRVLDLED-VYKPVLPE-TIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRH  202 (442)
Q Consensus       126 ~~~~~L~~L~l~~-~~~~~l~~-~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~  202 (442)
                      ..+++|++|+|++ |.+..++. .|+++++|++|+|++|.+..+| ..|+++++|++|+|++|.++.+|..+.....|+.
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~  107 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceE
Confidence            4578899999996 88888874 6889999999999999998875 4679999999999999999988887665555999


Q ss_pred             eeeccccccc
Q 013456          203 LYLNDIHLQM  212 (442)
Q Consensus       203 L~l~~~~~~~  212 (442)
                      |++.+|.+..
T Consensus       108 l~l~~N~~~c  117 (347)
T 2ifg_A          108 LVLSGNPLHC  117 (347)
T ss_dssp             EECCSSCCCC
T ss_pred             EEeeCCCccC
Confidence            9999987653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=2.6e-09  Score=99.08  Aligned_cols=109  Identities=20%  Similarity=0.254  Sum_probs=50.2

Q ss_pred             CceeEEEEeccCCCCCCccccc--CCCCCcEEEeCcc--cccCcc------cccCCCCCCcccEEEecccCCcceEE---
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLG--QLRELKALRLFAH--SYIGEK------MTCGNGGFPQLRVLKLWVLKELKEWT---  389 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~~------~~~~~~~~~~L~~L~l~~~~~l~~~~---  389 (442)
                      ++|++|++..|.++......++  .+|+|+.|+|+.+  ...+..      .......||+|+.|.+.+|.......   
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence            4566666655555433333332  4566666665321  111100      01111246666666666554321110   


Q ss_pred             eCCCccccccEEEeccCCCCCC-----CccCCCCCCCcEEEeccccc
Q 013456          390 IEEGAMTALEKLEIRNCPKLKM-----PTELTKLSNLKELTLVKKVL  431 (442)
Q Consensus       390 ~~~~~~~~L~~L~l~~c~~l~~-----p~~l~~l~~L~~L~l~~n~l  431 (442)
                      ...+.+|+|++|+++.|.+...     +.++.++++|+.|+|++|.+
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            1113456666666665544331     33334556666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.70  E-value=6.7e-10  Score=103.89  Aligned_cols=135  Identities=16%  Similarity=0.109  Sum_probs=72.4

Q ss_pred             ccccceecccccccccC-----Ccccc-ccCCCcEEeecCccccc--cchhhhcccccceeeeccccccccccCC--CCC
Q 013456          151 LQLLRYVGLRRTFIDSI-----PKSLG-DLHSLETLDMKHTNITS--LPKSIWKVKTLRHLYLNDIHLQMSVQKP--FVK  220 (442)
Q Consensus       151 l~~L~~L~L~~~~i~~l-----p~~~~-~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~--~~~  220 (442)
                      +++|++|++++|.++..     ...+. ..++|++|+|++|.+..  +......+.+|++|++++|.+.......  ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45677777777766532     11222 23689999999998872  2233345678999999998775322110  001


Q ss_pred             -CCCcccccccccccCCCC----CchhhhccccCcceeeEEeeccccc---hhHHhhcCCcccccceeecccc
Q 013456          221 -PSLTNLRTLWGLSIGKKS----PPLNWLENLSDLKNLGLICNIASLG---KITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       221 -~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                       ...++|++|++.+|....    .++..+..+++|++|++++|.+...   .++..+...++|+.|++++|.+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence             123456666655554422    1223334455566666655543311   1233444445555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=2.6e-08  Score=92.36  Aligned_cols=81  Identities=20%  Similarity=0.179  Sum_probs=53.6

Q ss_pred             hhcCceeEEEecCCCCC----------CCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccc-ccchh
Q 013456          125 IRGYRLLRVLDLEDVYK----------PVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT-SLPKS  193 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~----------~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~  193 (442)
                      ..++++|+.|.+.....          ..+...+..+++|+.|+++++.-..++. + .+++|++|++..|.+. .....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            44677888887764321          2355566778889999998863224443 3 3788999999888766 22233


Q ss_pred             hh--cccccceeeecc
Q 013456          194 IW--KVKTLRHLYLND  207 (442)
Q Consensus       194 i~--~l~~L~~L~l~~  207 (442)
                      +.  .+++|++|+++.
T Consensus       213 l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHHSBCTTCCEEEEEC
T ss_pred             HHHccCCCCcEEEEec
Confidence            43  688888888853

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.5e-07  Score=76.71  Aligned_cols=88  Identities=11%  Similarity=0.107  Sum_probs=65.7

Q ss_pred             CceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc-cCcccccCCCCC----CcccEEEecccCCcceEE-eCCCccc
Q 013456          323 PNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY-IGEKMTCGNGGF----PQLRVLKLWVLKELKEWT-IEEGAMT  396 (442)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~-~~~~~~~  396 (442)
                      .+|+.|++++|.+++.....+..+++|+.|+|++|.. ++..... +...    ++|++|+|++|+.++.-- .....++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3799999999998877777788999999999999964 4333332 3343    579999999998776411 1224689


Q ss_pred             cccEEEeccCCCCCC
Q 013456          397 ALEKLEIRNCPKLKM  411 (442)
Q Consensus       397 ~L~~L~l~~c~~l~~  411 (442)
                      +|+.|++++|+..+.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            999999999987765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.33  E-value=2e-07  Score=76.03  Aligned_cols=83  Identities=14%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             CCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE--eCCC---ccccccEEEeccCCCCCC--CccCCCCC
Q 013456          347 RELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT--IEEG---AMTALEKLEIRNCPKLKM--PTELTKLS  419 (442)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~---~~~~L~~L~l~~c~~l~~--p~~l~~l~  419 (442)
                      ..|+.|++++|.+++..... +..+++|++|+|++|..++...  ....   .+++|+.|+|++|...+.  -..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            47999999999987766655 6899999999999998877522  1111   246899999999987665  55577899


Q ss_pred             CCcEEEecccc
Q 013456          420 NLKELTLVKKV  430 (442)
Q Consensus       420 ~L~~L~l~~n~  430 (442)
                      +|++|+|++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999995

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.32  E-value=2e-05  Score=74.22  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=64.9

Q ss_pred             CCCCccccc-cceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCC---CCCChh-hhhcccccceecccc
Q 013456           87 TPSDKKQFE-YLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVY---KPVLPE-TIGKLQLLRYVGLRR  161 (442)
Q Consensus        87 ~~~~~~~~~-~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~l~~-~l~~l~~L~~L~L~~  161 (442)
                      ....+..++ .|++..+-+... .+...          +|.+|.+|+.+.+..+.   +..+.. +|.++..|+.+.+..
T Consensus        55 g~~aF~~~~~~L~sI~iP~svt-~Ig~~----------AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~  123 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPDTVT-EIGSN----------AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD  123 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECTTCC-EECTT----------TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred             CHhhccCCCCcCEEEEECCCee-EEhHH----------HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC
Confidence            455666663 477776654321 22222          34568888888887543   444443 577777888777654


Q ss_pred             cccccCC-ccccccCCCcEEeecCccccccc-hhhhcccccceeeeccc
Q 013456          162 TFIDSIP-KSLGDLHSLETLDMKHTNITSLP-KSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       162 ~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~  208 (442)
                      + +..++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus       124 ~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          124 S-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             T-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred             c-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence            3 44553 34677788888888643 33333 34556777777777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=2.8e-07  Score=76.97  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             hhcCceeEEEecCCC-CCCC-----Chhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCccccc----
Q 013456          125 IRGYRLLRVLDLEDV-YKPV-----LPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNITS----  189 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~~----  189 (442)
                      +...+.|++|+|++| .+..     +...+...++|++|+|++|.++.     +...+...++|++|+|++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            356788888888887 6654     34456667788888888887753     34445556778888888887762    


Q ss_pred             -cchhhhcccccceeee--ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccc
Q 013456          190 -LPKSIWKVKTLRHLYL--NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIAS  261 (442)
Q Consensus       190 -lp~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  261 (442)
                       +...+...++|++|++  ++|.+.....                      ..+...+...+.|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~----------------------~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVE----------------------MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHH----------------------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHH----------------------HHHHHHHHhCCCcCEEeccCCCCC
Confidence             4555666777888888  6665542211                      013345666678888888877554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=3.4e-07  Score=76.50  Aligned_cols=119  Identities=15%  Similarity=0.099  Sum_probs=82.9

Q ss_pred             hhhhhcccccceeccccc-cccc-----CCccccccCCCcEEeecCcccc-----ccchhhhcccccceeeecccccccc
Q 013456          145 PETIGKLQLLRYVGLRRT-FIDS-----IPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMS  213 (442)
Q Consensus       145 ~~~l~~l~~L~~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~  213 (442)
                      ...+...+.|++|+|++| .++.     +...+...++|++|+|++|.+.     .+...+...++|++|++++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667888999999998 7753     4455667788999999999876     2445566678899999988876532


Q ss_pred             ccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeE--Eeeccccc---hhHHhhcCCcccccceeecccc
Q 013456          214 VQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGL--ICNIASLG---KITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       214 ~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      ..                      ..+...+...+.|++|++  ++|.+...   .+...+...++|+.|++++|.+
T Consensus       109 g~----------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GI----------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HH----------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HH----------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            11                      013345666678888888  66765522   2455566678899999988764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.22  E-value=2.5e-05  Score=73.59  Aligned_cols=318  Identities=12%  Similarity=0.072  Sum_probs=151.4

Q ss_pred             eeEEEEecCCCCCCCCCCccccccceeEEEEeecCC---CCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCCh-hhh
Q 013456           73 VCRLAEHLDNLSSITPSDKKQFEYLHSYLFFVKRKG---GKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLP-ETI  148 (442)
Q Consensus        73 ~~~l~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l  148 (442)
                      ++.+.+. +....+....|.++.+|+.+.+.++...   .+...          +|..+..|+.+.+..+ +..++ ..+
T Consensus        66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----------aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ----------AFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT----------TTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechh----------hchhcccceeeccCCc-cceehhhhh
Confidence            5666653 3345567888999999999988654311   12222          3456788888777644 33333 467


Q ss_pred             hcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456          149 GKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR  227 (442)
Q Consensus       149 ~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~  227 (442)
                      ..+..|+.+.+..+ +..++ ..+..+..|+.+.+..+ ++.+........+|+.+.+..+...  +.. ..+..+.++.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~--i~~-~af~~c~~l~  208 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR--IGT-NAFSECFALS  208 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE--ECT-TTTTTCTTCC
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc--ccc-chhhhccccc
Confidence            88899999998753 44443 35678899999998764 5555554445567888887654221  111 1345555555


Q ss_pred             cccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEE
Q 013456          228 TLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELY  307 (442)
Q Consensus       228 ~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~  307 (442)
                      ...........           ....-...+........ .......+..+.+-. ..    ......++..+..|+.+.
T Consensus       209 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ip~-~v----~~i~~~aF~~c~~L~~i~  271 (394)
T 4gt6_A          209 TITSDSESYPA-----------IDNVLYEKSANGDYALI-RYPSQREDPAFKIPN-GV----ARIETHAFDSCAYLASVK  271 (394)
T ss_dssp             EEEECCSSSCB-----------SSSCEEEECTTSCEEEE-ECCTTCCCSEEECCT-TE----EEECTTTTTTCSSCCEEE
T ss_pred             eeccccccccc-----------ccceeeccccccccccc-ccccccccceEEcCC-cc----eEcccceeeecccccEEe
Confidence            44322111100           00000000000000000 000011111111110 00    001112345555666665


Q ss_pred             eccccCC-CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcc
Q 013456          308 LLGRLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELK  386 (442)
Q Consensus       308 l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  386 (442)
                      +...... ......-+.+|+.+.+.. .++......|..|.+|+.+.+..+ + ..+....+.++.+|+.+.+..  .++
T Consensus       272 lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C~~L~~i~ip~--sv~  346 (394)
T 4gt6_A          272 MPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGCEQLERIAIPS--SVT  346 (394)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEECT--TCC
T ss_pred             cccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCCCCCCEEEECc--ccC
Confidence            5432210 011111125566666642 222223345666777777777543 1 223333466677777777753  233


Q ss_pred             eEE-eCCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccc
Q 013456          387 EWT-IEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVL  431 (442)
Q Consensus       387 ~~~-~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l  431 (442)
                      .+. ..+.++++|+.+++.++...  -..+..+.+|+.+.+..+.+
T Consensus       347 ~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          347 KIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             BCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred             EEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence            332 23456677777777654321  12345566677776665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=2.3e-06  Score=75.19  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             cccccceecccccccccC---CccccccCCCcEEeecCccccccchhhhccc--ccceeeeccccccccccC-----CCC
Q 013456          150 KLQLLRYVGLRRTFIDSI---PKSLGDLHSLETLDMKHTNITSLPKSIWKVK--TLRHLYLNDIHLQMSVQK-----PFV  219 (442)
Q Consensus       150 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~-----~~~  219 (442)
                      ++++|++|+|++|.+..+   |..++.+++|++|+|++|.++.+ ..+..+.  +|++|++.+|.+.+.++.     ...
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            455566666666555443   23344556666666666655544 2233333  566666666655432221     012


Q ss_pred             CCCCcccccccc
Q 013456          220 KPSLTNLRTLWG  231 (442)
Q Consensus       220 ~~~l~~L~~L~~  231 (442)
                      +..+++|+.|+.
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            345556665553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=4.3e-07  Score=79.84  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=57.8

Q ss_pred             hhcccccce--ecccccccccCCccc----cccCCCcEEeecCcccccc---chhhhcccccceeeeccccccccccCCC
Q 013456          148 IGKLQLLRY--VGLRRTFIDSIPKSL----GDLHSLETLDMKHTNITSL---PKSIWKVKTLRHLYLNDIHLQMSVQKPF  218 (442)
Q Consensus       148 l~~l~~L~~--L~L~~~~i~~lp~~~----~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~  218 (442)
                      +...+.|+.  ++++.|....++..+    .++++|++|+|++|.++.+   |..+..+++|+.|++++|.+.+...   
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~---  213 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE---  213 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG---
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh---
Confidence            333444444  444555433333221    4567777777777766643   3455677777777777777664321   


Q ss_pred             CCCCCc--ccccccccccCCCCCch-------hhhccccCcceeeE
Q 013456          219 VKPSLT--NLRTLWGLSIGKKSPPL-------NWLENLSDLKNLGL  255 (442)
Q Consensus       219 ~~~~l~--~L~~L~~~~~~~~~~~~-------~~l~~l~~L~~L~l  255 (442)
                       +..++  +|++|++.++......+       ..+..+++|+.|+-
T Consensus       214 -l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          214 -LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             -GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             -hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence             23333  67777776666543221       23566677776663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.98  E-value=0.00026  Score=66.18  Aligned_cols=38  Identities=8%  Similarity=-0.143  Sum_probs=16.0

Q ss_pred             cccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEec
Q 013456          342 VLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLW  380 (442)
Q Consensus       342 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  380 (442)
                      .|..|.+|+.+.+.++.+.. +....+.++.+|+.+.+.
T Consensus       281 aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccccccccce-ehhhhhcCCCCCCEEEcC
Confidence            34445555555554433321 122224444555555443

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.72  E-value=8.7e-06  Score=80.22  Aligned_cols=48  Identities=10%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccccCCe
Q 013456            2 APEDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESGGV   53 (442)
Q Consensus         2 ~~ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~~~~   53 (442)
                      ++||+|+ ||++|++||||+++..+   +..+|+|||+|||+|+.++.++++
T Consensus       426 ~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          426 LDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             CTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            5789998 99999999999987642   456899999999999999987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.57  E-value=0.0028  Score=59.07  Aligned_cols=138  Identities=11%  Similarity=0.052  Sum_probs=88.9

Q ss_pred             cCCcCCCceEEeccccCC-CcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCccc
Q 013456          297 LNNHKELKELYLLGRLPG-PLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLR  375 (442)
Q Consensus       297 ~~~~~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  375 (442)
                      +..+.+|+.+.+...... ......-+..|+.+.+..+ ++......+..+.+|+.+.+..+ + .......+..+++|+
T Consensus       213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c-eeccccccccccccc
Confidence            445667777777544211 1111122368888888665 33333456788899999998654 2 233344477899999


Q ss_pred             EEEecccCCcceEE-eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCCCCC
Q 013456          376 VLKLWVLKELKEWT-IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPEDAWP  440 (442)
Q Consensus       376 ~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~~~~  440 (442)
                      .+.+.++ .++.+. ..+.++++|+.+.|.+. ...+ ...+.+|.+|+++.+..+ ++.+.+..|.
T Consensus       290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             EEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             ccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            9999763 455554 34567899999999654 3334 667889999999988644 6666665553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.49  E-value=0.0018  Score=53.64  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=32.1

Q ss_pred             cCceeEEEecCCC-CCCC-----Chhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCcccc
Q 013456          127 GYRLLRVLDLEDV-YKPV-----LPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNIT  188 (442)
Q Consensus       127 ~~~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~  188 (442)
                      .-+.|+.|+|+++ .++.     +-..+..-+.|+.|+|++|.++.     +.+.+..-+.|++|+|++|.|.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3456666666653 4432     23344444566666666665542     2223333455666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.10  E-value=0.008  Score=46.32  Aligned_cols=51  Identities=18%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             EEecCCCCCC--CChhhhhcccccceecccccccccCCcc-ccccCCCcEEeecCc
Q 013456          133 VLDLEDVYKP--VLPETIGKLQLLRYVGLRRTFIDSIPKS-LGDLHSLETLDMKHT  185 (442)
Q Consensus       133 ~L~l~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~  185 (442)
                      +++.++..+.  .+|..+.  .+|++|+|++|.|..+|.. |..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4444544444  4443321  2345555555555555332 344445555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.96  E-value=0.0091  Score=46.03  Aligned_cols=55  Identities=22%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             ceecccccccc--cCCccccccCCCcEEeecCccccccchh-hhcccccceeeecccccc
Q 013456          155 RYVGLRRTFID--SIPKSLGDLHSLETLDMKHTNITSLPKS-IWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       155 ~~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~  211 (442)
                      ..++-+++.++  .+|..+.  .+|++|+|++|.|+.+|.. +..+++|+.|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777888887  8887653  5799999999999988876 567899999999998654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.68  E-value=0.0066  Score=50.28  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             hhcccccceeccccc-cccc-----CCccccccCCCcEEeecCcccc-----ccchhhhcccccceeeecccccccccc-
Q 013456          148 IGKLQLLRYVGLRRT-FIDS-----IPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMSVQ-  215 (442)
Q Consensus       148 l~~l~~L~~L~L~~~-~i~~-----lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~-  215 (442)
                      +.+-+.|++|+|+++ .|+.     +-+.+..-+.|+.|+|++|.+.     .+...+..-..|++|+++.|.+..... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445578999999885 6652     3445566788999999999876     344556667889999999988754321 


Q ss_pred             -CCCCCCCCcccccccccccCC--CC-----CchhhhccccCcceeeEEeec
Q 013456          216 -KPFVKPSLTNLRTLWGLSIGK--KS-----PPLNWLENLSDLKNLGLICNI  259 (442)
Q Consensus       216 -~~~~~~~l~~L~~L~~~~~~~--~~-----~~~~~l~~l~~L~~L~l~~~~  259 (442)
                       ....+..-+.|+.|++..+..  .+     .+...+..-+.|+.|+++.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence             111234445688888765432  11     234456666778888777653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.43  E-value=0.01  Score=64.49  Aligned_cols=45  Identities=11%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhccccccC
Q 013456            4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDAESG   51 (442)
Q Consensus         4 ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~~~~   51 (442)
                      ++.+++++++|+++|||+...   .|+..+|+|||+||++|+..+.++
T Consensus       408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence            678999999999999999764   455678999999999999987665

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=92.15  E-value=0.12  Score=51.09  Aligned_cols=42  Identities=10%  Similarity=0.155  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhhcccc
Q 013456            4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYLFPDA   48 (442)
Q Consensus         4 ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~~~i~   48 (442)
                      ++.++.++++|+++|||+....   +...+|+|||+|+++++...
T Consensus       408 ~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          408 TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence            3567899999999999996543   44568999999999998763

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=88.18  E-value=0.18  Score=52.59  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHcCeEEEEEecCCCceeEEEcChhhhhhh
Q 013456            4 EDQAKKDFHQLVLMNMIEVVKLKSDGRPKTCRVPSSLSDYL   44 (442)
Q Consensus         4 ed~~~~~~~~Lv~r~li~~~~~~~~~~~~~~~mhdlv~d~~   44 (442)
                      ++.|++++++|++||||+..     +...+|+|||++++++
T Consensus       401 eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          401 KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK  436 (1221)
T ss_dssp             SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence            34689999999999999872     2235799999999966

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 39/268 (14%), Positives = 75/268 (27%), Gaps = 14/268 (5%)

Query: 176 SLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG 235
            L  +      +  +PK +        L L +  +       F   +L NL TL  ++  
Sbjct: 11  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDF--KNLKNLHTLILINNK 66

Query: 236 KKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIG 295
                      L  L+ L L  N     ++  L + +           N+          
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKN-----QLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

Query: 296 SLNNHKELK-ELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL 354
            LN    ++     L          +    L    ++ + ++  P  +   L EL     
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---- 177

Query: 355 FAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTE 414
              + I +       G   L  L L                  L +L + N   +K+P  
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237

Query: 415 LTKLSNLKELTLVKKVLKMKPEDAWPRP 442
           L     ++ + L    +     + +  P
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 16/236 (6%)

Query: 124 AIRGYRLLRVLDLEDVYKP-VLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDM 182
             +  + L  L L +     + P     L  L  + L +  +  +P+ +      + L +
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRV 107

Query: 183 KHTNITSLPKSIWKVKTL-RHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPL 241
               IT + KS++        + L    L+ S  +      +  L  +        + P 
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 167

Query: 242 NWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHK 301
               +L++L     +            ++GL +L  L L   +   V      GSL N  
Sbjct: 168 GLPPSLTELH----LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----NGSLANTP 219

Query: 302 ELKELYLLG-RLPGPLKLHELPPNLRIFTLS---LSYLSEDPMPVLGQLRELKALR 353
            L+EL+L   +L            +++  L    +S +  +     G   +  +  
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 55/326 (16%), Positives = 104/326 (31%), Gaps = 52/326 (15%)

Query: 147 TIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN 206
           +   L  +  +   R  I SI   +  L++L  ++  +  +T +   +  +  L  + +N
Sbjct: 39  SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMN 96

Query: 207 DIHLQM----------------------------SVQKPFVKPSLTNLRTLWGLSIGKKS 238
           +  +                                    ++ S   +  +  LS     
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 239 PPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLN 298
             L++   ++DLK L  +  +  L   +N +  ++ L  L               I  L 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 299 NHKELKELYLLG-RLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAH 357
               L EL L G +L     L  L  NL    L+ + +S   +  L  L +L  L+L A+
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN 273

Query: 358 SYIG-----------EKMTCGNGGFPQLRVLKLWVLKELK------EWTIEEGAMTALEK 400
                                N       +  L  L  L              ++T L++
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 333

Query: 401 LEIRNCPKLKMPTELTKLSNLKELTL 426
           L   N  K+   + L  L+N+  L+ 
Sbjct: 334 LFFANN-KVSDVSSLANLTNINWLSA 358

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 117 NLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHS 176
           N L+ +  I   + L  L L       +   +  L  L+ +      +  +  SL +L +
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTN 352

Query: 177 LETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
           +  L   H  I+ L   +  +  +  L LND
Sbjct: 353 INWLSAGHNQISDLT-PLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 12/183 (6%)

Query: 246 NLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKE 305
            +SD+  LG++ N+  L    N ++ + +L SL   +  D        +  L+   +L E
Sbjct: 208 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 267

Query: 306 LYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT 365
           L L     G  ++  + P   +  L+   L+E+ +  +  +  LK L      +      
Sbjct: 268 LKL-----GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 366 CGNGGFPQLRVLKLW--VLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLKE 423
                  +L+ L      + ++         +T +  L   +  ++   T L  L+ + +
Sbjct: 323 SPVSSLTKLQRLFFANNKVSDVSSL----ANLTNINWLSAGHN-QISDLTPLANLTRITQ 377

Query: 424 LTL 426
           L L
Sbjct: 378 LGL 380

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL 190
           L  L++ +     LP    +L+ L         +  +P+      +L+ L +++  +   
Sbjct: 286 LEELNVSNNKLIELPALPPRLERLI---ASFNHLAEVPELPQ---NLKQLHVEYNPLREF 339

Query: 191 PKSIWKVKTLRHLYLN 206
           P      +++  L +N
Sbjct: 340 PDIP---ESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 154 LRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMS 213
           L  + +    +  +P        LE L     ++  +P+     + L+ L++    L+  
Sbjct: 286 LEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELP---QNLKQLHVEYNPLR-- 337

Query: 214 VQKPFVKPSLTNLR 227
            + P +  S+ +LR
Sbjct: 338 -EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 174 LHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS 233
             SLE L++ +  +  LP    +   L  L  +  HL        V     NL+ L  + 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAE------VPELPQNLKQLH-VE 332

Query: 234 IGKKSPPLNWLENLSDLK 251
                   +  E++ DL+
Sbjct: 333 YNPLREFPDIPESVEDLR 350

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 163 FIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
              ++P+ L  L  L +L++   N+         ++        +
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 249 DLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGS-LNNHKELKELY 307
           D+++L + C   S  +   L+  L   + +RL             I S L  +  L EL 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELN 61

Query: 308 LLGRLPGPLKLHELPPNLRIFTLSLSYLS 336
           L     G + +H +   L+  +  +  LS
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 165 DSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND 207
           +     L  L +L+TL ++  ++ ++PK  +    L   +L+ 
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.86
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.5e-23  Score=196.83  Aligned_cols=85  Identities=13%  Similarity=0.123  Sum_probs=50.2

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcccc
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLG  172 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~  172 (442)
                      .+.+++.|.+.++....+.            .+..+++|++|++++|.+..+++ ++++++|++|++++|.+..++. ++
T Consensus        42 ~l~~l~~L~l~~~~I~~l~------------gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~  107 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID------------GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA  107 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT------------TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             HhCCCCEEECCCCCCCCcc------------ccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-cc
Confidence            4556666666554332221            12346666777777666666653 6666667777776666666543 66


Q ss_pred             ccCCCcEEeecCccccccc
Q 013456          173 DLHSLETLDMKHTNITSLP  191 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp  191 (442)
                      ++++|++|+++++.++.++
T Consensus       108 ~l~~L~~L~~~~~~~~~~~  126 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDID  126 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccc
Confidence            6666667666666555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.1e-22  Score=184.50  Aligned_cols=266  Identities=20%  Similarity=0.202  Sum_probs=187.0

Q ss_pred             eeEEEecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCcccccc-chhhhcccccceeeecc
Q 013456          130 LLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLND  207 (442)
Q Consensus       130 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~  207 (442)
                      .++.++.++..+.++|..+.  +++++|++++|.|+.+|+ +|.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            56778888888888888764  589999999999999976 588899999999999988876 55688899999999999


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecccc-chhHHhhcCCcccccceeeccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASL-GKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      |.+.. +|.    .....+..|....+.........+.....+..+....+.... ......+..+++|+.+++.+|...
T Consensus        89 n~l~~-l~~----~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          89 NQLKE-LPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SCCSB-CCS----SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CccCc-Ccc----chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            88763 332    233456666666555544444445555566666655442211 122334455556666666555433


Q ss_pred             cCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCccccc
Q 013456          287 YVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTC  366 (442)
Q Consensus       287 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  366 (442)
                      ..+                             ...+++|+.|++++|..+...+..+..++.++.|++++|.+.+..+ .
T Consensus       164 ~l~-----------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~-~  213 (305)
T d1xkua_         164 TIP-----------------------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-G  213 (305)
T ss_dssp             SCC-----------------------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-T
T ss_pred             ccC-----------------------------cccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc-c
Confidence            221                             1223678888888887776677788888888888888887765433 3


Q ss_pred             CCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCc-------cCCCCCCCcEEEeccccccc
Q 013456          367 GNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPT-------ELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       367 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~-------~l~~l~~L~~L~l~~n~l~~  433 (442)
                      .+.++++|++|++++| .++.++.....+++|++|++++|.+..++.       .....++|+.|+|++|+++.
T Consensus       214 ~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         214 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccccccceeeecccc-cccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            3677888999999887 566777667778899999999887766522       23457889999999998864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=4.3e-23  Score=187.99  Aligned_cols=244  Identities=20%  Similarity=0.169  Sum_probs=144.7

Q ss_pred             ceeEEEecCCCCCC---CChhhhhcccccceecccc-cccc-cCCccccccCCCcEEeecCccccc-cchhhhcccccce
Q 013456          129 RLLRVLDLEDVYKP---VLPETIGKLQLLRYVGLRR-TFID-SIPKSLGDLHSLETLDMKHTNITS-LPKSIWKVKTLRH  202 (442)
Q Consensus       129 ~~L~~L~l~~~~~~---~l~~~l~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~  202 (442)
                      .+++.|+|+++.+.   .+|..++++++|++|+|++ |.+. .+|.+|+++++|++|+|++|++.. .+..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            35778888876554   4778888888888888876 5554 788888888888888888888874 4555777888888


Q ss_pred             eeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCc-ceeeEEeeccccchhHHhhcCCcccccceee
Q 013456          203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDL-KNLGLICNIASLGKITNLIQGLTSLESLRLR  281 (442)
Q Consensus       203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  281 (442)
                      +++++|.+...+|.  .+++++.++.+++..+...+..+..+..+.++ +.+.++.|... ...+..+..+..+ .+++.
T Consensus       130 l~l~~N~~~~~~p~--~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-~~~~~~~~~l~~~-~l~l~  205 (313)
T d1ogqa_         130 LDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFANLNLA-FVDLS  205 (313)
T ss_dssp             EECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGGCCCS-EEECC
T ss_pred             cccccccccccCch--hhccCcccceeecccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            88888877665554  47777777777777776665666666666665 56666666544 3444444443332 35555


Q ss_pred             ccccccCCccccccccCCcCCCceEEeccccC--CCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccc
Q 013456          282 SINDFYVPSDLAIGSLNNHKELKELYLLGRLP--GPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSY  359 (442)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  359 (442)
                      .+........    .+...++++.+.+.++..  .+..+... ++|+.|++++|.+++.+|..++++++|++|+|++|.+
T Consensus       206 ~~~~~~~~~~----~~~~~~~l~~l~~~~~~l~~~~~~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         206 RNMLEGDASV----LFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             SSEEEECCGG----GCCTTSCCSEEECCSSEECCBGGGCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccccccccc----cccccccccccccccccccccccccccc-cccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            4433222111    122344444444443311  01112222 4555555555555555555555555555555555555


Q ss_pred             cCcccccCCCCCCcccEEEecccC
Q 013456          360 IGEKMTCGNGGFPQLRVLKLWVLK  383 (442)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~  383 (442)
                      .+.+|.  .+.+++|+.+++.+|+
T Consensus       281 ~g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         281 CGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCC--STTGGGSCGGGTCSSS
T ss_pred             cccCCC--cccCCCCCHHHhCCCc
Confidence            443331  3344445544444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=3.6e-23  Score=188.50  Aligned_cols=251  Identities=18%  Similarity=0.153  Sum_probs=191.5

Q ss_pred             cccceecccccccc---cCCccccccCCCcEEeecC-cccc-ccchhhhcccccceeeeccccccccccCCCCCCCCccc
Q 013456          152 QLLRYVGLRRTFID---SIPKSLGDLHSLETLDMKH-TNIT-SLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNL  226 (442)
Q Consensus       152 ~~L~~L~L~~~~i~---~lp~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  226 (442)
                      .++++|+|+++.+.   .+|++++++++|++|+|++ |++. .+|..++++++|++|++++|.+.+..+.  .+..+..|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~--~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD--FLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG--GGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc--cccchhhh
Confidence            47999999998776   5899999999999999997 6777 8999999999999999999998865554  47788888


Q ss_pred             ccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCccc-ccceeeccccccCCccccccccCCcCCCce
Q 013456          227 RTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSL-ESLRLRSINDFYVPSDLAIGSLNNHKELKE  305 (442)
Q Consensus       227 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  305 (442)
                      +.+++..+......+..+..+++++.++++.|... +.+|..+..+.++ +.+.+++|.......               
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~-~~ip~~~~~l~~l~~~l~~~~n~l~~~~~---------------  191 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIP---------------  191 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEECC---------------
T ss_pred             cccccccccccccCchhhccCcccceeeccccccc-ccccccccccccccccccccccccccccc---------------
Confidence            88888887777777888888889999888888665 5667777666665 566666654432211               


Q ss_pred             EEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCc
Q 013456          306 LYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKEL  385 (442)
Q Consensus       306 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  385 (442)
                                ..+...  ....+++..+...+..+..+..+++|+.+++.+|.+.+..+  .+..+++|+.|++++|...
T Consensus       192 ----------~~~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         192 ----------PTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ----------GGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCE
T ss_pred             ----------cccccc--ccccccccccccccccccccccccccccccccccccccccc--ccccccccccccCccCeec
Confidence                      112222  33457777776666777788888899999988888765443  3677888999999887655


Q ss_pred             ceEEeCCCccccccEEEeccCCCCC-CCccCCCCCCCcEEEecccc-ccccC
Q 013456          386 KEWTIEEGAMTALEKLEIRNCPKLK-MPTELTKLSNLKELTLVKKV-LKMKP  435 (442)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~c~~l~-~p~~l~~l~~L~~L~l~~n~-l~~~p  435 (442)
                      ..+|...+.+++|++|++++|.+.. +|. +.++++|+.+++++|+ +...|
T Consensus       258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             ccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            5677777888999999999988774 364 5788889999999986 44443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=5.5e-21  Score=179.09  Aligned_cols=285  Identities=20%  Similarity=0.198  Sum_probs=172.3

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+.+|++|+++++.+.++ +.+..+++|++|++++|.++.+|. ++++++|++|++++|.+..+++ ++++++|+.|++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             HHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-cccccccccccc
Confidence            3467899999999999887 578899999999999999999974 9999999999999999998764 889999999999


Q ss_pred             ccccccccccCCCCCCCCccccccccccc-----------------------------------------CCCCCchhhh
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSI-----------------------------------------GKKSPPLNWL  244 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~-----------------------------------------~~~~~~~~~l  244 (442)
                      +++...+..+..    ....+.......+                                         ..........
T Consensus       118 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         118 FNNQITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             CSSCCCCCGGGT----TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             cccccccccccc----ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            988765432211    1111111100000                                         0001122334


Q ss_pred             ccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccC-CCcccccCCC
Q 013456          245 ENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLP-GPLKLHELPP  323 (442)
Q Consensus       245 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~  323 (442)
                      ..+++++.++++.+...  .++. ...+++|+.|++++|.....+      .+..+++|+.+++.++.. ....+... +
T Consensus       194 ~~l~~~~~l~l~~n~i~--~~~~-~~~~~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~-~  263 (384)
T d2omza2         194 AKLTNLESLIATNNQIS--DITP-LGILTNLDELSLNGNQLKDIG------TLASLTNLTDLDLANNQISNLAPLSGL-T  263 (384)
T ss_dssp             GGCTTCSEEECCSSCCC--CCGG-GGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCCCGGGTTC-T
T ss_pred             ccccccceeeccCCccC--CCCc-ccccCCCCEEECCCCCCCCcc------hhhcccccchhccccCccCCCCccccc-c
Confidence            55666777776666433  2221 344566777777766544322      244556666776666532 12223333 5


Q ss_pred             ceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEe
Q 013456          324 NLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEI  403 (442)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  403 (442)
                      +|+.|+++++.+++.  ..+..++.++.+.+..|.+.+..   .+..+++++.|+++++ .++.++ ....+|+|++|++
T Consensus       264 ~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~~---~~~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L  336 (384)
T d2omza2         264 KLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFF  336 (384)
T ss_dssp             TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEEC
T ss_pred             cCCEeeccCcccCCC--Ccccccccccccccccccccccc---ccchhcccCeEECCCC-CCCCCc-ccccCCCCCEEEC
Confidence            667777766665532  23445555666665555554311   1345566666666654 333332 2345666666666


Q ss_pred             ccCCCCCCCccCCCCCCCcEEEeccccccccC
Q 013456          404 RNCPKLKMPTELTKLSNLKELTLVKKVLKMKP  435 (442)
Q Consensus       404 ~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p  435 (442)
                      ++|.+...+ .+.++++|++|++++|+++.+|
T Consensus       337 ~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         337 ANNKVSDVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSSCCCCCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCCCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            666544333 4566666666666666666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=7.2e-20  Score=165.78  Aligned_cols=252  Identities=15%  Similarity=0.122  Sum_probs=181.9

Q ss_pred             ccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccc
Q 013456          153 LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWG  231 (442)
Q Consensus       153 ~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~  231 (442)
                      .++.++-++..++++|..+.  +++++|+|++|+++++|+ .+.++++|++|++++|.+....+.  .+.++++|+.|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~--~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG--AFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh--hhhCCCccCEecc
Confidence            67788888888999998774  689999999999999987 588999999999999988754443  5888888888888


Q ss_pred             cccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccc
Q 013456          232 LSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGR  311 (442)
Q Consensus       232 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  311 (442)
                      .++.... ++.  .....+..|+...+... ......+.....+..+....+.......                     
T Consensus        87 ~~n~l~~-l~~--~~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~---------------------  141 (305)
T d1xkua_          87 SKNQLKE-LPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI---------------------  141 (305)
T ss_dssp             CSSCCSB-CCS--SCCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGB---------------------
T ss_pred             cCCccCc-Ccc--chhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCC---------------------
Confidence            7775533 222  22345666766665443 2222333344444445444432211100                     


Q ss_pred             cCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceE-Ee
Q 013456          312 LPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEW-TI  390 (442)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~  390 (442)
                        ....+..+ ++|+.+++++|.+.. .+..  .+++|+.|++.+|........ .+..++.++.|.+++|. +..+ +.
T Consensus       142 --~~~~~~~l-~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~-l~~~~~~  213 (305)
T d1xkua_         142 --ENGAFQGM-KKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDNG  213 (305)
T ss_dssp             --CTTGGGGC-TTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSC-CCEECTT
T ss_pred             --Cccccccc-cccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChh-Hhhcccccccccccccc-ccccccc
Confidence              01123333 678888888887764 2322  368999999999987755443 37888999999999874 4444 44


Q ss_pred             CCCccccccEEEeccCCCCCCCccCCCCCCCcEEEeccccccccCCCCCCC
Q 013456          391 EEGAMTALEKLEIRNCPKLKMPTELTKLSNLKELTLVKKVLKMKPEDAWPR  441 (442)
Q Consensus       391 ~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~~L~l~~n~l~~~p~~~~~~  441 (442)
                      ....+++|++|++++|.+.++|.++.++++|+.|++++|+|+.++...|.+
T Consensus       214 ~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         214 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccC
Confidence            456789999999999988888999999999999999999999999887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.3e-19  Score=155.96  Aligned_cols=125  Identities=20%  Similarity=0.155  Sum_probs=86.4

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCC-ccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIP-KSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      ...+..++.+++.+..+|+.+.  ++|++|+|++|.+..+| ..|.++++|++|+|++|+++.+|. ++.+++|++|+++
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence            4556667888888888887664  57889999999988886 457889999999999998888764 4678899999999


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEee
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  258 (442)
                      +|.+....+   .+..+++|+.|++..+.........+..+.+++.|++..|
T Consensus        86 ~N~l~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          86 HNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             SSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             ccccccccc---ccccccccccccccccccceeecccccccccccccccccc
Confidence            887764322   3566666666666555444333333344444444444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=2.1e-17  Score=152.34  Aligned_cols=276  Identities=20%  Similarity=0.176  Sum_probs=152.7

Q ss_pred             ceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          129 RLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      .++++|||+++.++.+|+.   .++|++|++++|.++++|+.+   .+|+.|++++|.++.++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            3567777777777777643   356777777777777776543   4566777777766655431   134777777777


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccC
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      .+. .+|   .++.+++|+.|++..+......    .....+..+.+..+...   ....+..++.++.+.+.++.....
T Consensus       109 ~l~-~lp---~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~---~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         109 QLE-KLP---ELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CCS-SCC---CCTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccc-ccc---chhhhccceeeccccccccccc----cccccccchhhcccccc---ccccccccccceeccccccccccc
Confidence            654 233   2456677777766554432211    11223333333322111   112223344444444444332221


Q ss_pred             Cccc--------------cccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEe
Q 013456          289 PSDL--------------AIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRL  354 (442)
Q Consensus       289 ~~~~--------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  354 (442)
                      +...              .......++.|+.+.+.++...  .+...+.++..+.+..+.+... +..   .+++....+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~~~~~~~~~~~~-~~~---~~~l~~~~~  251 (353)
T d1jl5a_         178 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK--TLPDLPPSLEALNVRDNYLTDL-PEL---PQSLTFLDV  251 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS--SCCSCCTTCCEEECCSSCCSCC-CCC---CTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccc-ccc---ccccccccc
Confidence            1100              1123445677777877765321  2223335677777776655431 111   122222222


Q ss_pred             CcccccC---------------cccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCC
Q 013456          355 FAHSYIG---------------EKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLS  419 (442)
Q Consensus       355 ~~~~~~~---------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~  419 (442)
                      ..+.+.+               .........+++|++|++++| .++.++   ..+++|+.|++++|.+..+|..   ++
T Consensus       252 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp---~~~~~L~~L~L~~N~L~~l~~~---~~  324 (353)
T d1jl5a_         252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP---ALPPRLERLIASFNHLAEVPEL---PQ  324 (353)
T ss_dssp             CSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCCC---CT
T ss_pred             ccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCccc---cccCCCCEEECCCCcCCccccc---cC
Confidence            2221110               001111345789999999997 455655   3579999999999988777753   56


Q ss_pred             CCcEEEeccccccccCCC
Q 013456          420 NLKELTLVKKVLKMKPED  437 (442)
Q Consensus       420 ~L~~L~l~~n~l~~~p~~  437 (442)
                      +|++|++++|+|+.+|+.
T Consensus       325 ~L~~L~L~~N~L~~lp~~  342 (353)
T d1jl5a_         325 NLKQLHVEYNPLREFPDI  342 (353)
T ss_dssp             TCCEEECCSSCCSSCCCC
T ss_pred             CCCEEECcCCcCCCCCcc
Confidence            899999999999999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3e-18  Score=153.20  Aligned_cols=219  Identities=19%  Similarity=0.126  Sum_probs=134.4

Q ss_pred             EecCCCCCCCChhhhhcccccceecccccccccCCc-cccccCCCcEEeecCccccccch-hhhcccccceeeecccccc
Q 013456          134 LDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPK-SLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       134 L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~  211 (442)
                      ++.++..+..+|..+.  +.+++|+|++|.++.+|. +|.++++|++|+++++.+..++. .+..+..++++....+...
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            4566666777776553  467888888888887764 47778888888888887775544 3445677777766544333


Q ss_pred             ccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCcc
Q 013456          212 MSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSD  291 (442)
Q Consensus       212 ~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  291 (442)
                      ..++. ..+.++++|++|++..+.........+..+++|+.+++..|.+. ...+..+..+++|+.|++++|.+...+..
T Consensus        94 ~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          94 RSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccc-hhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchh
Confidence            33332 24666777777776666655444555666666777777666443 22234455566666666666554433221


Q ss_pred             ccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCC
Q 013456          292 LAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGF  371 (442)
Q Consensus       292 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  371 (442)
                                               .+..+ ++|+.+++++|.+++..+..|..+++|+.|++++|.+.+..+. .+..+
T Consensus       172 -------------------------~f~~l-~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~-~~~~~  224 (284)
T d1ozna_         172 -------------------------AFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPL  224 (284)
T ss_dssp             -------------------------TTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHTTC
T ss_pred             -------------------------hhccc-cccchhhhhhccccccChhHhhhhhhccccccccccccccccc-ccccc
Confidence                                     12222 5666666666666655566667777777777777766543332 25566


Q ss_pred             CcccEEEecccC
Q 013456          372 PQLRVLKLWVLK  383 (442)
Q Consensus       372 ~~L~~L~l~~~~  383 (442)
                      ++|++|++++|+
T Consensus       225 ~~L~~L~l~~N~  236 (284)
T d1ozna_         225 RALQYLRLNDNP  236 (284)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cccCEEEecCCC
Confidence            777777776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.5e-18  Score=150.98  Aligned_cols=222  Identities=16%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             ecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccccccccC
Q 013456          157 VGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       157 L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      +..++..++++|..+.  +.+++|+|++|+++.+|. .+.++++|++|++++|.+....+.  .+..++.+..+......
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~--~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc--ccccccccccccccccc
Confidence            4555667888887764  678999999999998886 588999999999999887644332  34445555544332221


Q ss_pred             CCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCC
Q 013456          236 KKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP  315 (442)
Q Consensus       236 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  315 (442)
                      ...                        ...+..+.++++|+.|++++|.....+..                        
T Consensus        92 ~~~------------------------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~------------------------  123 (284)
T d1ozna_          92 QLR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPG------------------------  123 (284)
T ss_dssp             TCC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTT------------------------
T ss_pred             ccc------------------------cccchhhcccccCCEEecCCccccccccc------------------------
Confidence            111                        11133344555555555555443221111                        


Q ss_pred             cccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCcc
Q 013456          316 LKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAM  395 (442)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  395 (442)
                        ....+.+|+.+++++|.++...+..+..+++|+.|++++|.+.. .+...+.++++|+.+.+++|......+..+..+
T Consensus       124 --~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         124 --LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             --TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             --ccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cchhhhccccccchhhhhhccccccChhHhhhh
Confidence              11112566666666666665555566666777777777776643 223335667777777777654433334455666


Q ss_pred             ccccEEEeccCCCCCC-CccCCCCCCCcEEEeccccccc
Q 013456          396 TALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKM  433 (442)
Q Consensus       396 ~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~  433 (442)
                      ++|+.|++++|.+... +..+..+++|+.|++++|++..
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            7777777777776666 4556677777777777776653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.9e-17  Score=144.26  Aligned_cols=197  Identities=19%  Similarity=0.120  Sum_probs=114.2

Q ss_pred             ccccceecccccccccCCccccccCCCcEEeecCccccccch-hhhcccccceeeeccccccccccCCCCCCCCcccccc
Q 013456          151 LQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPK-SIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTL  229 (442)
Q Consensus       151 l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L  229 (442)
                      ...+...+.+++.++.+|+.+.  ++|++|+|++|.++.+|. .+.++++|++|++++|.+.. ++.   ++.       
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~---~~~-------   75 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV---DGT-------   75 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC---CSC-------
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc---ccc-------
Confidence            3445556888888889988774  579999999999998874 57889999999999887652 221   223       


Q ss_pred             cccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEec
Q 013456          230 WGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLL  309 (442)
Q Consensus       230 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  309 (442)
                                       +++|+.|++++|.+  ...+..+..+++|+.|+++++.....+..                  
T Consensus        76 -----------------l~~L~~L~Ls~N~l--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------------  118 (266)
T d1p9ag_          76 -----------------LPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLG------------------  118 (266)
T ss_dssp             -----------------CTTCCEEECCSSCC--SSCCCCTTTCTTCCEEECCSSCCCCCCSS------------------
T ss_pred             -----------------cccccccccccccc--cccccccccccccccccccccccceeecc------------------
Confidence                             34455555555432  22233344555566666655443322111                  


Q ss_pred             cccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE
Q 013456          310 GRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT  389 (442)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  389 (442)
                             ....+ .+++.|++++|.++...+..+..+++|+.+++++|.+.+..+ ..+..+++|++|+|++|. +++++
T Consensus       119 -------~~~~l-~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~-L~~lp  188 (266)
T d1p9ag_         119 -------ALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENS-LYTIP  188 (266)
T ss_dssp             -------TTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSC-CCCCC
T ss_pred             -------ccccc-cccccccccccccceeccccccccccchhcccccccccccCc-cccccccccceeecccCC-CcccC
Confidence                   11112 566666666666665555555666666666666666653222 224455555555555542 44444


Q ss_pred             eCCCccccccEEEeccCC
Q 013456          390 IEEGAMTALEKLEIRNCP  407 (442)
Q Consensus       390 ~~~~~~~~L~~L~l~~c~  407 (442)
                      .....+++|+.|++++|+
T Consensus       189 ~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         189 KGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTTTTCCCSEEECCSCC
T ss_pred             hhHCCCCCCCEEEecCCC
Confidence            444445555555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.9e-17  Score=138.76  Aligned_cols=100  Identities=19%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  207 (442)
                      +.++..++++.+.+..+ ..+.++.+|++|++.+|.++.++ .++.+++|++|++++|.++.++. +.++++|+.+++++
T Consensus        18 l~~~~~~~l~~~~~~d~-~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS
T ss_pred             HHHHHHHHhCCCCcCCc-CCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-cccccccccccccc
Confidence            34444445555555443 24566777888888888777774 57778888888888887776643 67777888888777


Q ss_pred             ccccccccCCCCCCCCccccccccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSI  234 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~  234 (442)
                      |.+.. ++   .+..+++|+.+.+..+
T Consensus        95 n~~~~-i~---~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          95 NPLKN-VS---AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             CCCSC-CG---GGTTCTTCCEEECTTS
T ss_pred             ccccc-cc---cccccccccccccccc
Confidence            76542 22   2445555555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=2.2e-15  Score=138.58  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             ccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeCCCccccccEEEeccCCCCCCCccCCCCCCCc
Q 013456          343 LGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIEEGAMTALEKLEIRNCPKLKMPTELTKLSNLK  422 (442)
Q Consensus       343 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~p~~l~~l~~L~  422 (442)
                      ...+++|++|++++|.+.. .+    ..+++|+.|++++| .+++++   ..+++|+.|++++|+..++|...   .+|+
T Consensus       280 ~~~~~~L~~L~Ls~N~l~~-lp----~~~~~L~~L~L~~N-~L~~l~---~~~~~L~~L~L~~N~L~~lp~~~---~~L~  347 (353)
T d1jl5a_         280 CDLPPSLEELNVSNNKLIE-LP----ALPPRLERLIASFN-HLAEVP---ELPQNLKQLHVEYNPLREFPDIP---ESVE  347 (353)
T ss_dssp             CCCCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred             cccCCCCCEEECCCCccCc-cc----cccCCCCEEECCCC-cCCccc---cccCCCCEEECcCCcCCCCCccc---cccC
Confidence            3457899999999998764 22    35889999999987 466665   34678999999999977767532   3577


Q ss_pred             EEEec
Q 013456          423 ELTLV  427 (442)
Q Consensus       423 ~L~l~  427 (442)
                      .|.+.
T Consensus       348 ~L~~~  352 (353)
T d1jl5a_         348 DLRMN  352 (353)
T ss_dssp             EEECC
T ss_pred             eeECc
Confidence            77654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.6e-16  Score=133.90  Aligned_cols=189  Identities=17%  Similarity=0.201  Sum_probs=129.7

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+.+|+.|++.++.+.++ +.+..+++|++|++++|.+..++. +.++++|+++++++|.++.++ .+..+++|+.+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-ccccccccccccc
Confidence            4578899999999999988 468999999999999999988754 899999999999999988875 5788999999999


Q ss_pred             ccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccc
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSIND  285 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  285 (442)
                      +++......+    +...+.+..+.                        +..+...  . ...+..+++|+.|.+.+|..
T Consensus       115 ~~~~~~~~~~----~~~~~~~~~l~------------------------~~~~~~~--~-~~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         115 TSTQITDVTP----LAGLSNLQVLY------------------------LDLNQIT--N-ISPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             TTSCCCCCGG----GTTCTTCCEEE------------------------CCSSCCC--C-CGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccch----hccccchhhhh------------------------chhhhhc--h-hhhhcccccccccccccccc
Confidence            9876543221    23334444433                        3333221  1 11234455666666665543


Q ss_pred             ccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccc
Q 013456          286 FYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMT  365 (442)
Q Consensus       286 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  365 (442)
                      ....                           .+..+ ++|+.|++++|.+++ + +.++.+++|++|++++|.+++..  
T Consensus       164 ~~~~---------------------------~l~~l-~~L~~L~Ls~n~l~~-l-~~l~~l~~L~~L~Ls~N~lt~i~--  211 (227)
T d1h6ua2         164 SDLT---------------------------PLANL-SKLTTLKADDNKISD-I-SPLASLPNLIEVHLKNNQISDVS--  211 (227)
T ss_dssp             CCCG---------------------------GGTTC-TTCCEEECCSSCCCC-C-GGGGGCTTCCEEECTTSCCCBCG--
T ss_pred             ccch---------------------------hhccc-ccceecccCCCccCC-C-hhhcCCCCCCEEECcCCcCCCCc--
Confidence            2111                           12223 567777777777663 2 34777888888888888766432  


Q ss_pred             cCCCCCCcccEEEecc
Q 013456          366 CGNGGFPQLRVLKLWV  381 (442)
Q Consensus       366 ~~~~~~~~L~~L~l~~  381 (442)
                       .+..+++|+.|++++
T Consensus       212 -~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 -PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGTTCTTCCEEEEEE
T ss_pred             -ccccCCCCCEEEeeC
Confidence             256788888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2e-15  Score=127.91  Aligned_cols=165  Identities=22%  Similarity=0.208  Sum_probs=112.0

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecc
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  207 (442)
                      +..|+.|+++++.+..++ .+..+++|++|++++|.++.++ .++.+++|++|++++|+++.+| .+..+++|+.|++.+
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccc
Confidence            567788888888777765 4677888888888888887776 3677888888888888887776 477788888888887


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeecccccc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDFY  287 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  287 (442)
                      |.... .+   .+..+++++.+.+..+....  ...+..+++|+.+++++|...  .++ .+.++++|+.|++++|.+..
T Consensus       122 ~~~~~-~~---~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~--~i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         122 NGISD-IN---GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS--DIV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             SCCCC-CG---GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC--CCG-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccc-cc---cccccccccccccccccccc--ccccccccccccccccccccc--ccc-cccCCCCCCEEECCCCCCCC
Confidence            76542 22   35667777777766655433  234566777888888777543  233 26677788888887776543


Q ss_pred             CCccccccccCCcCCCceEEecc
Q 013456          288 VPSDLAIGSLNNHKELKELYLLG  310 (442)
Q Consensus       288 ~~~~~~~~~~~~~~~L~~l~l~~  310 (442)
                      .+      .+..+++|+.|++++
T Consensus       193 l~------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG------GGTTCTTCSEEEEEE
T ss_pred             Ch------hhcCCCCCCEEEccC
Confidence            22      244555666666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.3e-16  Score=139.44  Aligned_cols=223  Identities=21%  Similarity=0.199  Sum_probs=110.7

Q ss_pred             EEEecCCCCCCCChhhhhccc--ccceecccccccccCCccccccCCCcEEeecCcccc--ccchhhhcccccceeeecc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQ--LLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNIT--SLPKSIWKVKTLRHLYLND  207 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~--~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~  207 (442)
                      +.||++++.+.  |..++.+.  ....+.+....+...........+|++||+++|.+.  .++..+.++++|++|++.+
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35667655432  33333322  223344444333322223334567777777777665  3445566777777777777


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCC--chhhhccccCcceeeEEeec-cccchhHHhhcC-Ccccccceeecc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP--PLNWLENLSDLKNLGLICNI-ASLGKITNLIQG-LTSLESLRLRSI  283 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~-l~~L~~L~l~~~  283 (442)
                      |.+......  .++.+++|++|++.++.....  .......+++|++|+++++. .+...+...+.. .++|+.|+++++
T Consensus        81 ~~l~~~~~~--~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          81 LRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             CBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCCCcHHHH--HHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            765433222  244555555555555433221  11223445666666666542 221222222222 245555555442


Q ss_pred             ccccCCccccccccCCcCCCceEEeccccCCCcccccCCCceeEEEEecc-CCCCCCcccccCCCCCcEEEeCccc-ccC
Q 013456          284 NDFYVPSDLAIGSLNNHKELKELYLLGRLPGPLKLHELPPNLRIFTLSLS-YLSEDPMPVLGQLRELKALRLFAHS-YIG  361 (442)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~-~~~  361 (442)
                      ...- .. ..                     ...+...+++|++|++++| .+++..+..++++++|++|++++|. +++
T Consensus       159 ~~~i-~~-~~---------------------l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         159 RKNL-QK-SD---------------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             GGGS-CH-HH---------------------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             cccc-cc-cc---------------------ccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            1100 00 00                     0011111366777777765 3555556667777888888887764 333


Q ss_pred             cccccCCCCCCcccEEEeccc
Q 013456          362 EKMTCGNGGFPQLRVLKLWVL  382 (442)
Q Consensus       362 ~~~~~~~~~~~~L~~L~l~~~  382 (442)
                      ..+. .++.+|+|+.|++++|
T Consensus       216 ~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         216 ETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGG-GGGGCTTCCEEECTTS
T ss_pred             HHHH-HHhcCCCCCEEeeeCC
Confidence            3322 2556777777777776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.1e-15  Score=128.38  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=50.5

Q ss_pred             EecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecccccc
Q 013456          134 LDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       134 L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~  211 (442)
                      +.++.+.+...+ ....+.++++|+++++.+.+++ .++.+++|++|++++|+++.++. +.++++|++|++++|.+.
T Consensus        23 ~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          23 TVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HHTTCSSTTSEE-CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             HHhCCCCCCCcc-CHHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccc
Confidence            344544443332 2345677788888887777764 47777888888888887776654 777788888887776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6e-17  Score=144.29  Aligned_cols=250  Identities=16%  Similarity=0.107  Sum_probs=140.4

Q ss_pred             eecccccccccCCcccccc--CCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccc
Q 013456          156 YVGLRRTFIDSIPKSLGDL--HSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLS  233 (442)
Q Consensus       156 ~L~L~~~~i~~lp~~~~~l--~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~  233 (442)
                      .+|++++.+.  |+.++.+  ..+..+.++.+.+...........+|++|++++|.+..... ...+..+++|++|++.+
T Consensus         4 ~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l-~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL-HGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH-HHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHH-HHHHHhCCCcccccccc
Confidence            5667665442  2222211  23445555555444333334455677888887776543211 11245666666666666


Q ss_pred             cCCCCCchhhhccccCcceeeEEee-ccccchhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEecccc
Q 013456          234 IGKKSPPLNWLENLSDLKNLGLICN-IASLGKITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRL  312 (442)
Q Consensus       234 ~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  312 (442)
                      +.........++.+++|++|+++++ ..+...+......+++|+.|++++|........                     
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~---------------------  139 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV---------------------  139 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH---------------------
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccc---------------------
Confidence            6554445555666666666666654 222222333334456666666655432211000                     


Q ss_pred             CCCcccccCCCceeEEEEecc--CCCCC-CcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE
Q 013456          313 PGPLKLHELPPNLRIFTLSLS--YLSED-PMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT  389 (442)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~--~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  389 (442)
                        ...+...+++|+.|+++++  .+++. +......+|+|+.|++++|...+......+..+++|++|++++|..++.-.
T Consensus       140 --~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         140 --QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             --HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             --hhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence              0112233467888888765  23332 223446789999999999864433333336789999999999998775422


Q ss_pred             -eCCCccccccEEEeccCCCCCC-CccCCCCCCCcEEEecccccccc
Q 013456          390 -IEEGAMTALEKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMK  434 (442)
Q Consensus       390 -~~~~~~~~L~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~  434 (442)
                       ...+.+|+|+.|++.+|..... +.....+|+|+   +..+.++.+
T Consensus       218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCC
Confidence             2346789999999999932222 22224456654   566677655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3.1e-15  Score=125.69  Aligned_cols=149  Identities=19%  Similarity=0.196  Sum_probs=114.0

Q ss_pred             cCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeec
Q 013456          127 GYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLN  206 (442)
Q Consensus       127 ~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  206 (442)
                      .+++++.|+++++.+.++. .+..+++|++|++++|.+..++. ++++++|++|++++|.+..++. +..+++|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-ccccccccccccc
Confidence            4678889999988888774 57888999999999998888764 8889999999999988887764 7788999999998


Q ss_pred             cccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeeccccchhHHhhcCCcccccceeeccccc
Q 013456          207 DIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIASLGKITNLIQGLTSLESLRLRSINDF  286 (442)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  286 (442)
                      +|......    .+..+++|+.|++.++....  ...+..+++|+.|++.+|...  .++ .+.++++|+.|++++|.+.
T Consensus       115 ~~~~~~~~----~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~--~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         115 NNQITDID----PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVT--DLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             SSCCCCCG----GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC--CCG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc----ccchhhhhHHhhhhhhhhcc--ccccccccccccccccccccc--CCc-cccCCCCCCEEECCCCCCC
Confidence            88765322    36678888888887776543  235778888888888887553  333 3677888888888887654


Q ss_pred             c
Q 013456          287 Y  287 (442)
Q Consensus       287 ~  287 (442)
                      .
T Consensus       186 ~  186 (199)
T d2omxa2         186 D  186 (199)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=9.2e-15  Score=123.79  Aligned_cols=166  Identities=23%  Similarity=0.244  Sum_probs=132.8

Q ss_pred             ccccceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCcccc
Q 013456           93 QFEYLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLG  172 (442)
Q Consensus        93 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~  172 (442)
                      ++..++.+.+.++.....+            .+..+++|++|++++|.+..++ .++++++|++|++++|.+..+| .+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~------------~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~  109 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ------------GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLK  109 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT------------TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGT
T ss_pred             HhcCccEEECcCCCCCCch------------hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccc
Confidence            4667777777666543332            1355899999999999998886 4688999999999999999887 588


Q ss_pred             ccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcce
Q 013456          173 DLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKN  252 (442)
Q Consensus       173 ~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~  252 (442)
                      ++++|+.|++++|.+..++ .+..+++|+.+++++|.+....    .++.+++|+.+++.++.....  ..+..+++|+.
T Consensus       110 ~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~  182 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN  182 (210)
T ss_dssp             TCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccc----ccccccccccccccccccccc--ccccCCCCCCE
Confidence            8999999999999888765 5788999999999999876422    367889999999988876543  24889999999


Q ss_pred             eeEEeeccccchhHHhhcCCcccccceeec
Q 013456          253 LGLICNIASLGKITNLIQGLTSLESLRLRS  282 (442)
Q Consensus       253 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  282 (442)
                      |++++|.+.  .++ .+.++++|+.|++++
T Consensus       183 L~Ls~N~i~--~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHIS--DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCC--BCG-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCC--CCh-hhcCCCCCCEEEccC
Confidence            999998653  444 588899999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.8e-15  Score=127.81  Aligned_cols=85  Identities=22%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             CCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEEeC-CCccccccEEEeccCCCCCCCc-cCCCCCCCcEEE
Q 013456          348 ELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWTIE-EGAMTALEKLEIRNCPKLKMPT-ELTKLSNLKELT  425 (442)
Q Consensus       348 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~p~-~l~~l~~L~~L~  425 (442)
                      .++.|++.+|.+.... .. ....++++++....+..+++++.. ...+++|++|++++|.+..+|. .+.++++|+.++
T Consensus       154 ~l~~L~l~~n~l~~i~-~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIH-NC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             SCEEEECCSSCCCEEC-TT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cceeeecccccccccc-cc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            4444555554443211 11 222344444444344445554432 3456677777777766665533 344444444433


Q ss_pred             eccccccccCC
Q 013456          426 LVKKVLKMKPE  436 (442)
Q Consensus       426 l~~n~l~~~p~  436 (442)
                      +  +.++.+|+
T Consensus       232 ~--~~l~~lp~  240 (242)
T d1xwdc1         232 T--YNLKKLPT  240 (242)
T ss_dssp             E--ESSSCSCC
T ss_pred             C--CCCCcCCC
Confidence            3  34556654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=126.53  Aligned_cols=30  Identities=17%  Similarity=0.016  Sum_probs=16.7

Q ss_pred             eccCCCCCCcccccCCCCCcEEEeCccccc
Q 013456          331 SLSYLSEDPMPVLGQLRELKALRLFAHSYI  360 (442)
Q Consensus       331 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  360 (442)
                      .+|.++......|.++++|+.|++++|.+.
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            444454333344566666666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.8e-14  Score=110.41  Aligned_cols=100  Identities=24%  Similarity=0.245  Sum_probs=72.8

Q ss_pred             EEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeecccccc
Q 013456          132 RVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       132 ~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~  211 (442)
                      |+|++++|.+..++ .+..+++|++|++++|.+..+|+.++.+++|++|++++|.++.+| .+.++++|++|++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            57888888887775 477888888888888888888877888888888888888888776 4778888888888888765


Q ss_pred             ccccCCCCCCCCccccccccccc
Q 013456          212 MSVQKPFVKPSLTNLRTLWGLSI  234 (442)
Q Consensus       212 ~~~~~~~~~~~l~~L~~L~~~~~  234 (442)
                      ..... ..++.+++|+.|++.++
T Consensus        79 ~~~~~-~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          79 QSAAI-QPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SSSTT-GGGGGCTTCCEEECTTS
T ss_pred             CCCCc-hhhcCCCCCCEEECCCC
Confidence            32211 12445555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.8e-15  Score=118.68  Aligned_cols=110  Identities=20%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             hhhcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhh-hcccccce
Q 013456          124 AIRGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSI-WKVKTLRH  202 (442)
Q Consensus       124 ~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~  202 (442)
                      .+.++..+|.|+|++|.+..++..+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|..+ ..+++|++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            455678899999999999999877788999999999999999885 5889999999999999999888765 57999999


Q ss_pred             eeeccccccccccCCCCCCCCcccccccccccC
Q 013456          203 LYLNDIHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       203 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      |++++|.+....... .+..+++|++|++.++.
T Consensus        92 L~L~~N~i~~~~~l~-~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          92 LILTNNSLVELGDLD-PLASLKSLTYLCILRNP  123 (162)
T ss_dssp             EECCSCCCCCGGGGG-GGGGCTTCCEEECCSSG
T ss_pred             ceecccccccccccc-ccccccccchhhcCCCc
Confidence            999999875321111 24455555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.7e-15  Score=143.01  Aligned_cols=327  Identities=18%  Similarity=0.114  Sum_probs=175.4

Q ss_pred             cceeEEEEeecCCCCCCchhhhHHHHHHhhhcCceeEEEecCCCCCCC-----Chhhhhcccccceeccccccccc----
Q 013456           96 YLHSYLFFVKRKGGKPAGEFGNLLKMVIAIRGYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFIDS----  166 (442)
Q Consensus        96 ~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i~~----  166 (442)
                      +|+.|.+..+...   +..|..++      +.++++|+|+|++|.+..     +...+..+++|++|+|++|.++.    
T Consensus         3 ~l~~ld~~~~~i~---~~~~~~l~------~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           3 DIQSLDIQCEELS---DARWAELL------PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEESCCCC---HHHHHHHH------HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCEEEeeCCcCC---hHHHHHHH------HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            5677777655432   22233333      447999999999997753     34567789999999999998853    


Q ss_pred             -CCcccc-ccCCCcEEeecCccccc-----cchhhhcccccceeeeccccccccccC--------CC-------------
Q 013456          167 -IPKSLG-DLHSLETLDMKHTNITS-----LPKSIWKVKTLRHLYLNDIHLQMSVQK--------PF-------------  218 (442)
Q Consensus       167 -lp~~~~-~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~--------~~-------------  218 (442)
                       +.+.+. ...+|++|++++|.++.     ++..+..+++|++|++++|.+......        ..             
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  153 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL  153 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccccc
Confidence             222232 23579999999998873     456677899999999999876431000        00             


Q ss_pred             ----------CCCCCcccccccccccCC-----------------------------CC----CchhhhccccCcceeeE
Q 013456          219 ----------VKPSLTNLRTLWGLSIGK-----------------------------KS----PPLNWLENLSDLKNLGL  255 (442)
Q Consensus       219 ----------~~~~l~~L~~L~~~~~~~-----------------------------~~----~~~~~l~~l~~L~~L~l  255 (442)
                                .+.....++.+.+..+..                             ..    .....+...+.++.+.+
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  233 (460)
T d1z7xw1         154 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL  233 (460)
T ss_dssp             BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred             chhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence                      000001111111111100                             00    00111223344555555


Q ss_pred             Eeeccccc----hhHHhhcCCcccccceeeccccccCCccccccccCCcCCCceEEeccccCCC-------cccccCCCc
Q 013456          256 ICNIASLG----KITNLIQGLTSLESLRLRSINDFYVPSDLAIGSLNNHKELKELYLLGRLPGP-------LKLHELPPN  324 (442)
Q Consensus       256 ~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~~~~~  324 (442)
                      ..+.....    ...........++.+++++|.............+...+.++.++++++....       ..+......
T Consensus       234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~  313 (460)
T d1z7xw1         234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ  313 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred             hhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence            44432211    1122223344566666666544332221122223345566666666543211       011112246


Q ss_pred             eeEEEEeccCCCCCCccc----ccCCCCCcEEEeCcccccCccccc---C-CCCCCcccEEEecccCCcce-----EEeC
Q 013456          325 LRIFTLSLSYLSEDPMPV----LGQLRELKALRLFAHSYIGEKMTC---G-NGGFPQLRVLKLWVLKELKE-----WTIE  391 (442)
Q Consensus       325 L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~---~-~~~~~~L~~L~l~~~~~l~~-----~~~~  391 (442)
                      |+.++++++.++......    +...++|++|+|++|.+.+.....   . ....+.|++|++++|. ++.     +...
T Consensus       314 L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~  392 (460)
T d1z7xw1         314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAAT  392 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHH
Confidence            778888777766443332    344567888888888765432211   1 1245668888888874 322     1112


Q ss_pred             CCccccccEEEeccCCCCCC-----CccCC-CCCCCcEEEecccccc
Q 013456          392 EGAMTALEKLEIRNCPKLKM-----PTELT-KLSNLKELTLVKKVLK  432 (442)
Q Consensus       392 ~~~~~~L~~L~l~~c~~l~~-----p~~l~-~l~~L~~L~l~~n~l~  432 (442)
                      ...+++|++|+|++|.+...     ...+. +..+|+.|++.+|.+.
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            23457888888888765432     11222 3346888888887664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.6e-13  Score=103.00  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=78.6

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccc--hhhhccccccee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLP--KSIWKVKTLRHL  203 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L  203 (442)
                      .++++|++|++++|.+..+|+.++.+++|++|++++|.+..+| .++++++|++|++++|.++.+|  ..+..+++|++|
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            5689999999999999999999999999999999999999997 4899999999999999999776  468899999999


Q ss_pred             eeccccccc
Q 013456          204 YLNDIHLQM  212 (442)
Q Consensus       204 ~l~~~~~~~  212 (442)
                      ++++|.+..
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCcCCc
Confidence            999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.1e-13  Score=108.75  Aligned_cols=129  Identities=19%  Similarity=0.163  Sum_probs=92.4

Q ss_pred             hhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccccccccccCCCCCCCCcccc
Q 013456          148 IGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDIHLQMSVQKPFVKPSLTNLR  227 (442)
Q Consensus       148 l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~  227 (442)
                      +.+...||+|+|++|.|..+|..+..+++|++|++++|.+++++ .+..+++|++|++++|.+... +.. .+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l-~~~-~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEG-LDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSC-HHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCC-Ccc-ccccccccc
Confidence            45777899999999999999876788999999999999999884 578899999999999987643 221 245677888


Q ss_pred             cccccccCCCCC-chhhhccccCcceeeEEeeccccch--hHHhhcCCcccccce
Q 013456          228 TLWGLSIGKKSP-PLNWLENLSDLKNLGLICNIASLGK--ITNLIQGLTSLESLR  279 (442)
Q Consensus       228 ~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~  279 (442)
                      .|++.++..... ....+..+++|++|++++|......  -...+..+++|+.|+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            887777765432 2245667777777777777543111  122455566666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=9.5e-14  Score=115.87  Aligned_cols=124  Identities=20%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             eEEEecCCC--CCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeeeccc
Q 013456          131 LRVLDLEDV--YKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYLNDI  208 (442)
Q Consensus       131 L~~L~l~~~--~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~  208 (442)
                      ++.+++++.  .+..++.++..+++|++|++++|.|..++ .+..+++|++|++++|.++.+|.....+++|++|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc
Confidence            455566643  46667778888888888888888888775 477888888888888888877766666677888888887


Q ss_pred             cccccccCCCCCCCCcccccccccccCCCCC-chhhhccccCcceeeEEeec
Q 013456          209 HLQMSVQKPFVKPSLTNLRTLWGLSIGKKSP-PLNWLENLSDLKNLGLICNI  259 (442)
Q Consensus       209 ~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~  259 (442)
                      .+.. ++   .+..+++|+.|++.++..... ....+..+++|+.|++++|.
T Consensus       104 ~i~~-l~---~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         104 QIAS-LS---GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECCC-HH---HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccc-cc---cccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            6552 11   144455555555554443321 11345555666666665553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=3.9e-12  Score=105.70  Aligned_cols=126  Identities=19%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             eEEEecCCCCCCCChhhhhcccccceeccccccccc-C-CccccccCCCcEEeecCcccccc-chhhhcccccceeeecc
Q 013456          131 LRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDS-I-PKSLGDLHSLETLDMKHTNITSL-PKSIWKVKTLRHLYLND  207 (442)
Q Consensus       131 L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~-l-p~~~~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~  207 (442)
                      .++++.+++.+.++|..+.  .++++|+|++|.|.. + +..|+++++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3466777777777776553  467777777777754 3 33456777777777777777644 34555677777777777


Q ss_pred             ccccccccCCCCCCCCcccccccccccCCCCCchhhhccccCcceeeEEeecc
Q 013456          208 IHLQMSVQKPFVKPSLTNLRTLWGLSIGKKSPPLNWLENLSDLKNLGLICNIA  260 (442)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  260 (442)
                      |.+....+.  .+.++++|+.|++.++......+..|..+++|++|++++|..
T Consensus        88 N~l~~l~~~--~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIKEISNK--MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSS--SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccCHH--HHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            766533222  466666777776666665554455566666777777766644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=4.5e-12  Score=105.29  Aligned_cols=115  Identities=18%  Similarity=0.190  Sum_probs=91.5

Q ss_pred             CCCceeEEEEeccCCCC-CCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-eCCCccccc
Q 013456          321 LPPNLRIFTLSLSYLSE-DPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTAL  398 (442)
Q Consensus       321 ~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L  398 (442)
                      +|+++++|+|++|.++. .....|..+++|+.|++++|.+..... ..+..+++|++|++++| .++.++ ..+.++++|
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGEN-KIKEISNKMFLGLHQL  104 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTC
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-cccccccccceeeeccc-cccccCHHHHhCCCcc
Confidence            45788999999998875 445677889999999999988875443 34788899999999986 455654 346788999


Q ss_pred             cEEEeccCCCCCC-CccCCCCCCCcEEEeccccccccCCC
Q 013456          399 EKLEIRNCPKLKM-PTELTKLSNLKELTLVKKVLKMKPED  437 (442)
Q Consensus       399 ~~L~l~~c~~l~~-p~~l~~l~~L~~L~l~~n~l~~~p~~  437 (442)
                      ++|++++|.+..+ |..+..+++|++|+|++|++...++.
T Consensus       105 ~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            9999999988887 66678899999999999988766543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=4.2e-14  Score=118.05  Aligned_cols=107  Identities=21%  Similarity=0.213  Sum_probs=68.3

Q ss_pred             hcCceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCccccccchhhhcccccceeee
Q 013456          126 RGYRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHLYL  205 (442)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  205 (442)
                      ..+++|+.|++++|.+..++ .+..+++|++|++++|.+..+|.....+++|++|++++|.++.++ .+..+++|++|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            44667777777777666664 466777777777777777766654555566777777777776653 3666777777777


Q ss_pred             ccccccccccCCCCCCCCcccccccccccC
Q 013456          206 NDIHLQMSVQKPFVKPSLTNLRTLWGLSIG  235 (442)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~  235 (442)
                      ++|.+....... .++.+++|+.|++.++.
T Consensus       123 ~~N~i~~~~~~~-~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         123 SNNKITNWGEID-KLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEECCCHHHHH-HHTTTTTCSEEEECSSH
T ss_pred             ccchhccccccc-cccCCCccceeecCCCc
Confidence            777664321111 25666777777666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=2.4e-13  Score=124.40  Aligned_cols=38  Identities=18%  Similarity=0.120  Sum_probs=19.5

Q ss_pred             cccccEEEeccCCCCCC-----CccCC-CCCCCcEEEecccccc
Q 013456          395 MTALEKLEIRNCPKLKM-----PTELT-KLSNLKELTLVKKVLK  432 (442)
Q Consensus       395 ~~~L~~L~l~~c~~l~~-----p~~l~-~l~~L~~L~l~~n~l~  432 (442)
                      .++|+.|++++|.+...     ...+. ++++|+.|+|++|++.
T Consensus       272 ~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            34566666666654321     22221 3556666666666653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=7.2e-13  Score=121.13  Aligned_cols=87  Identities=20%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             hhcCceeEEEecCCCCCCC-----ChhhhhcccccceecccccccccC-----------CccccccCCCcEEeecCcccc
Q 013456          125 IRGYRLLRVLDLEDVYKPV-----LPETIGKLQLLRYVGLRRTFIDSI-----------PKSLGDLHSLETLDMKHTNIT  188 (442)
Q Consensus       125 ~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~L~~~~i~~l-----------p~~~~~l~~L~~L~L~~~~l~  188 (442)
                      +.+...|+.|+|++|.+..     +...+...++|+.|+++++.....           .+.+..+++|+.|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            4557888888888876533     334566678888888887543322           223456788888888888765


Q ss_pred             c-----cchhhhcccccceeeecccccc
Q 013456          189 S-----LPKSIWKVKTLRHLYLNDIHLQ  211 (442)
Q Consensus       189 ~-----lp~~i~~l~~L~~L~l~~~~~~  211 (442)
                      .     +...+...++|++|++++|.+.
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             cccccchhhhhcccccchheeccccccc
Confidence            2     4445567788888888887653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-13  Score=129.80  Aligned_cols=303  Identities=17%  Similarity=0.109  Sum_probs=175.7

Q ss_pred             ceeEEEecCCCCCCCC--hhhhhcccccceecccccccc-----cCCccccccCCCcEEeecCccccc-----cchhhh-
Q 013456          129 RLLRVLDLEDVYKPVL--PETIGKLQLLRYVGLRRTFID-----SIPKSLGDLHSLETLDMKHTNITS-----LPKSIW-  195 (442)
Q Consensus       129 ~~L~~L~l~~~~~~~l--~~~l~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~i~-  195 (442)
                      .+|++||++++.+...  ..-+..+++|+.|+|++|.++     .++..+..+++|++|+|++|.++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5799999998887653  345677899999999999876     345556789999999999998862     222222 


Q ss_pred             cccccceeeeccccccccc--cCCCCCCCCcccccccccccCCCCCc---------------------------------
Q 013456          196 KVKTLRHLYLNDIHLQMSV--QKPFVKPSLTNLRTLWGLSIGKKSPP---------------------------------  240 (442)
Q Consensus       196 ~l~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~~~~~~~~~~~---------------------------------  240 (442)
                      ...+|++|++++|.+....  ..+..+..+++|++|++.++......                                 
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            2357999999999875431  11124677899999998776532100                                 


Q ss_pred             hhhhccccCcceeeEEeeccccchh---HH-----------------------------hhcCCcccccceeeccccccC
Q 013456          241 LNWLENLSDLKNLGLICNIASLGKI---TN-----------------------------LIQGLTSLESLRLRSINDFYV  288 (442)
Q Consensus       241 ~~~l~~l~~L~~L~l~~~~~~~~~~---~~-----------------------------~l~~l~~L~~L~l~~~~~~~~  288 (442)
                      ...+.....++.+.++.+.......   ..                             .+.....++.+.+.++.....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            1112233445555555442221110   01                             111112223333332221110


Q ss_pred             Cc-cccccccCCcCCCceEEeccccCCCc-------ccccCCCceeEEEEeccCCCCCCcccc-----cCCCCCcEEEeC
Q 013456          289 PS-DLAIGSLNNHKELKELYLLGRLPGPL-------KLHELPPNLRIFTLSLSYLSEDPMPVL-----GQLRELKALRLF  355 (442)
Q Consensus       289 ~~-~~~~~~~~~~~~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~  355 (442)
                      .. ............++.++++++.....       .+.. .+.++.+++++|.+++.....+     .....|+.+.++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~-~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccc-cccccccccccccccccccchhhcccccccccccccccc
Confidence            00 00011122345566666665432111       1122 2567777777776653222221     234578888888


Q ss_pred             cccccCccccc---CCCCCCcccEEEecccCCcce----EEeC-CCccccccEEEeccCCCCCC-----CccCCCCCCCc
Q 013456          356 AHSYIGEKMTC---GNGGFPQLRVLKLWVLKELKE----WTIE-EGAMTALEKLEIRNCPKLKM-----PTELTKLSNLK  422 (442)
Q Consensus       356 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~----~~~~-~~~~~~L~~L~l~~c~~l~~-----p~~l~~l~~L~  422 (442)
                      +|.+.......   .....++|++|+|++|..-..    +... ....+.|++|++++|.+...     +..+..+++|+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            88776443221   123567899999998753211    1111 12457799999999987642     44566789999


Q ss_pred             EEEecccccc
Q 013456          423 ELTLVKKVLK  432 (442)
Q Consensus       423 ~L~l~~n~l~  432 (442)
                      +|+|++|+|+
T Consensus       401 ~L~Ls~N~i~  410 (460)
T d1z7xw1         401 ELDLSNNCLG  410 (460)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCcCC
Confidence            9999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.2e-10  Score=88.00  Aligned_cols=84  Identities=20%  Similarity=0.192  Sum_probs=47.5

Q ss_pred             cCceeEEEecCCC-CCCCChh-hhhcccccceecccccccccC-CccccccCCCcEEeecCccccccchhhhccccccee
Q 013456          127 GYRLLRVLDLEDV-YKPVLPE-TIGKLQLLRYVGLRRTFIDSI-PKSLGDLHSLETLDMKHTNITSLPKSIWKVKTLRHL  203 (442)
Q Consensus       127 ~~~~L~~L~l~~~-~~~~l~~-~l~~l~~L~~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  203 (442)
                      .+++|+.|+++++ .++.++. .|.++++|+.|++++|.|..+ |..|..+++|++|+|++|+++.+|..+....+|++|
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccccc
Confidence            3455666666533 3555543 455566666666666666655 334556666666666666666665555544556666


Q ss_pred             eeccccc
Q 013456          204 YLNDIHL  210 (442)
Q Consensus       204 ~l~~~~~  210 (442)
                      ++++|.+
T Consensus       109 ~L~~Np~  115 (156)
T d2ifga3         109 VLSGNPL  115 (156)
T ss_dssp             ECCSSCC
T ss_pred             ccCCCcc
Confidence            6665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.3e-09  Score=82.85  Aligned_cols=106  Identities=15%  Similarity=0.032  Sum_probs=72.8

Q ss_pred             eeEEEEeccCCCCCCcccccCCCCCcEEEeCcccccCcccccCCCCCCcccEEEecccCCcceEE-eCCCccccccEEEe
Q 013456          325 LRIFTLSLSYLSEDPMPVLGQLRELKALRLFAHSYIGEKMTCGNGGFPQLRVLKLWVLKELKEWT-IEEGAMTALEKLEI  403 (442)
Q Consensus       325 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l  403 (442)
                      .+.++++++.++ ..+..+..+++|+.|++.++.....+....+.++++|+.|++++| .++.++ ..+..+++|++|++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence            344566665555 345567777888888887665333444445778888888888875 455654 33567788888888


Q ss_pred             ccCCCCCCCccCCCCCCCcEEEecccccc
Q 013456          404 RNCPKLKMPTELTKLSNLKELTLVKKVLK  432 (442)
Q Consensus       404 ~~c~~l~~p~~l~~l~~L~~L~l~~n~l~  432 (442)
                      ++|.+..+|.++....+|+.|+|++|++.
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccccccccccCCCccc
Confidence            88888777655555557888888888774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.8e-08  Score=78.34  Aligned_cols=15  Identities=13%  Similarity=0.339  Sum_probs=5.9

Q ss_pred             cCCCcEEeecCcccc
Q 013456          174 LHSLETLDMKHTNIT  188 (442)
Q Consensus       174 l~~L~~L~L~~~~l~  188 (442)
                      +++|++|++++|.++
T Consensus        90 l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          90 APNLKILNLSGNELK  104 (162)
T ss_dssp             STTCCCCCCTTSCCC
T ss_pred             CCcccccccccCccc
Confidence            333333344333333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3e-07  Score=72.95  Aligned_cols=104  Identities=15%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             CceeEEEecCCCCCCCChhhhhcccccceecccccccccCCccccccCCCcEEeecCcccccc---chhhhcccccceee
Q 013456          128 YRLLRVLDLEDVYKPVLPETIGKLQLLRYVGLRRTFIDSIPKSLGDLHSLETLDMKHTNITSL---PKSIWKVKTLRHLY  204 (442)
Q Consensus       128 ~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~  204 (442)
                      -...+.|++++....   ..+..+..+..++...+....++....++++|++|++++|+++.+   +..+..+++|+.|+
T Consensus        21 ~~~~~~Ldls~l~~~---~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          21 DGSQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             CSSSCCBCCCCCSSC---TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             chhhCeeecccCCCC---chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            345677787755421   123444455555555544444444456789999999999998865   34567899999999


Q ss_pred             eccccccccccCCCCCCCCcccccccccccCC
Q 013456          205 LNDIHLQMSVQKPFVKPSLTNLRTLWGLSIGK  236 (442)
Q Consensus       205 l~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~  236 (442)
                      +++|.+....+..  .....+|+.|++.++..
T Consensus        98 Ls~N~i~~l~~l~--~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          98 LSGNELKSERELD--KIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTSCCCCGGGHH--HHTTCCCSSCCCTTSTT
T ss_pred             cccCccccchhhh--hhhccccceeecCCCCc
Confidence            9999876432211  11223456666655544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=3.3e-05  Score=61.10  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             cCceeEEEecCCC-CCCC-----Chhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCccccc-----c
Q 013456          127 GYRLLRVLDLEDV-YKPV-----LPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNITS-----L  190 (442)
Q Consensus       127 ~~~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l~~-----l  190 (442)
                      +.+.|+.|+|+++ .++.     +-..+...++|++|++++|.++.     +.+.+...+.|++|++++|.+..     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4577888888753 3332     22345556677777777776642     22334455667777777776651     2


Q ss_pred             chhhhcccccceeeecccc
Q 013456          191 PKSIWKVKTLRHLYLNDIH  209 (442)
Q Consensus       191 p~~i~~l~~L~~L~l~~~~  209 (442)
                      -..+...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2334445566666666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.14  E-value=0.00012  Score=57.81  Aligned_cols=109  Identities=14%  Similarity=0.092  Sum_probs=61.0

Q ss_pred             cccccceeccccc-ccc-----cCCccccccCCCcEEeecCcccc-----ccchhhhcccccceeeecccccccccc--C
Q 013456          150 KLQLLRYVGLRRT-FID-----SIPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMSVQ--K  216 (442)
Q Consensus       150 ~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~--~  216 (442)
                      +.++|+.|+|+++ .++     .+-..+...++|++|+|++|.+.     .+...+...+.|++|++++|.+.....  .
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567777777763 343     12234455677777777777665     223344556777777777776643211  1


Q ss_pred             CCCCCCCcccccccccccCCCC-------CchhhhccccCcceeeEEee
Q 013456          217 PFVKPSLTNLRTLWGLSIGKKS-------PPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       217 ~~~~~~l~~L~~L~~~~~~~~~-------~~~~~l~~l~~L~~L~l~~~  258 (442)
                      ...+..-+.|++|++..+....       .+...+...+.|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            1124555667777776554322       13344455566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.07  E-value=0.00013  Score=57.35  Aligned_cols=61  Identities=16%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             cCceeEEEecCCC-CCCC-----Chhhhhcccccceeccccccccc-----CCccccccCCCcEEeecCccc
Q 013456          127 GYRLLRVLDLEDV-YKPV-----LPETIGKLQLLRYVGLRRTFIDS-----IPKSLGDLHSLETLDMKHTNI  187 (442)
Q Consensus       127 ~~~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~l  187 (442)
                      +.+.|+.|+++++ .++.     +-..+...++|++|++++|.++.     +-+.+...+.++.+++++|.+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            4566666666642 2321     12233445555555655554431     122233445555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.0003  Score=55.22  Aligned_cols=110  Identities=18%  Similarity=0.058  Sum_probs=67.6

Q ss_pred             hcccccceecccc-cccc-----cCCccccccCCCcEEeecCcccc-----ccchhhhcccccceeeeccccccccc--c
Q 013456          149 GKLQLLRYVGLRR-TFID-----SIPKSLGDLHSLETLDMKHTNIT-----SLPKSIWKVKTLRHLYLNDIHLQMSV--Q  215 (442)
Q Consensus       149 ~~l~~L~~L~L~~-~~i~-----~lp~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~--~  215 (442)
                      .+.+.|++|++++ +.++     .+-..+...++|++|++++|.+.     .+-..+...+.++.+++++|.+....  .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567888888887 4453     23344556788888888888765     23344556788888888887664321  1


Q ss_pred             CCCCCCCCccccccccccc--CCCC----CchhhhccccCcceeeEEee
Q 013456          216 KPFVKPSLTNLRTLWGLSI--GKKS----PPLNWLENLSDLKNLGLICN  258 (442)
Q Consensus       216 ~~~~~~~l~~L~~L~~~~~--~~~~----~~~~~l~~l~~L~~L~l~~~  258 (442)
                      ....+...++|+.+++..+  ....    .+...+...+.|++|++..+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1113455667776555332  2222    34455667788888887765