Citrus Sinensis ID: 013457

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
cccccccccEEEEEccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEcEEEEcccccccEEEEEcccccEEEEEccccEEEEEEccccccccccccccEEccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccEEcccccccEEEEEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEccEEccccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEccccEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEcccccccccEEEEEEEEEEccccEEEEcccccccccccccccccEEEEEEcccccEEEccccEEEEEc
ccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccEEEEEEcHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEcEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEEccccccccEEEEEccccccccccccccccccccccccccEEEEccccEEEEEc
MAEASAaseaasttaapfrpvLLISAGASHSVALLSGNivcswgrgedgqlghgdaedrlsptqlsaldgheivsvtcgadhttayseSCMQVYswgwgdfgrlghgnssdlftplpiKALHSLRVKQiacgdshclAVTVEgevqswgrnqngqlglgttedslvpqklQAFEGVSIKMVAAGAEHSVavaedgelygwgwgrygnlglgdrndrlipekvatvdREKMVMVACGWrhtisvsssgrlysygwskygqlghgdfkdhlVPCQLEALRESFISQISggwrhtmavtsdgklygwgwnkfgqvgvgdnvdhcspvqvkfpldqiscgwrhtlavterqnvfswgrgtngqlghgessdrnspkiieplsldgskgqniasskydpssgktwvspseryavvpddtvqgqtsvtgrgngsevsvpegdvkrirv
maeasaaseaasttaapfRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGnlglgdrndrlipekvatvdreKMVMVACGWrhtisvsssgrlYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTErqnvfswgrgtngqlghgessdrnspKIIEPLSLDGSKGQNiasskydpssgktwVSPSERYAvvpddtvqgqtsvtgrgngsevsvpegdvkrirv
MaeasaaseaasttaaPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
*****************FRPVLLISAGASHSVALLSGNIVCSWGRG********************ALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRG***************************************************************************************
MAEA*A*SEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTS*T*RG*GSEVSVPEG*VKRIRV
**************AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQ*********NSPKIIEPLSLDGSKGQNIA*************SPSERYAVVPDDTVQGQ**************PEGDVKRIRV
*****AASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
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MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSVPEGDVKRIRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV yes no 0.986 0.990 0.793 0.0
Q5GLZ8 1057 Probable E3 ubiquitin-pro yes no 0.911 0.381 0.334 2e-52
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.680 0.284 0.371 3e-51
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.680 0.284 0.368 7e-51
Q15034 1050 Probable E3 ubiquitin-pro no no 0.687 0.289 0.378 4e-49
Q15751 4861 Probable E3 ubiquitin-pro no no 0.703 0.063 0.347 1e-45
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.617 0.055 0.347 1e-40
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.805 0.073 0.316 2e-39
O95714 4834 E3 ubiquitin-protein liga no no 0.617 0.056 0.347 4e-39
P18754421 Regulator of chromosome c no no 0.742 0.779 0.340 4e-37
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/446 (79%), Positives = 392/446 (87%), Gaps = 10/446 (2%)

Query: 1   MAEASAASEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRL 60
           MAE  AA E      AP R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR 
Sbjct: 1   MAEDMAADE----VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP 56

Query: 61  SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA 120
           SPTQLSALDGH+IVSVTCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKA
Sbjct: 57  SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA 116

Query: 121 LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180
           LH +R+KQIACGDSHCLAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKM
Sbjct: 117 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKM 176

Query: 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHT 240
           VAAGAEH+ AV EDG+LYGWGWGRYGNLGLGDR DRL+PE+V +   EKM MVACGWRHT
Sbjct: 177 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 236

Query: 241 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGK 300
           ISVS SG LY+YGWSKYGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGK
Sbjct: 237 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGK 296

Query: 301 LYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGT 356
           LYGWGWNKFGQVGVG+N+D CSPVQV+FP D    Q+SCGWRHTLAVTER NVF+WGRGT
Sbjct: 297 LYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT 356

Query: 357 NGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQ 416
           NGQLG GES DRN PKIIE LS+DG+ GQ+I SS  DPSSGK+WVSP+ERYAVVPD+T  
Sbjct: 357 NGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET-- 414

Query: 417 GQTSVTGRGNGSEVSVPEGDVKRIRV 442
           G T  + +GNG ++SVP+ DVKR+R+
Sbjct: 415 GLTDGSSKGNGGDISVPQTDVKRVRI 440
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|P18754|RCC1_HUMAN Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
225438373445 PREDICTED: probable E3 ubiquitin-protein 0.975 0.968 0.839 0.0
449457319438 PREDICTED: probable E3 ubiquitin-protein 0.966 0.974 0.815 0.0
224093583444 predicted protein [Populus trichocarpa] 0.990 0.986 0.790 0.0
297797389440 UVB-resistance 8 [Arabidopsis lyrata sub 0.986 0.990 0.795 0.0
15237540440 protein UV-B resistance 8 [Arabidopsis t 0.986 0.990 0.793 0.0
5478530440 UVB-resistance protein UVR8 [Arabidopsis 0.986 0.990 0.793 0.0
312282233440 unnamed protein product [Thellungiella h 0.972 0.977 0.805 0.0
255563857437 uvb-resistance protein uvr8, putative [R 0.977 0.988 0.806 0.0
147782117423 hypothetical protein VITISV_010346 [Viti 0.925 0.966 0.8 0.0
356508943441 PREDICTED: probable E3 ubiquitin-protein 0.979 0.981 0.767 0.0
>gi|225438373|ref|XP_002274569.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera] gi|296082603|emb|CBI21608.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/435 (83%), Positives = 396/435 (91%), Gaps = 4/435 (0%)

Query: 12  STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGH 71
           S  +AP R VLLISAGASHSVALLSGN+VCSWGRGEDGQLGHGDAEDRLSPT LSALDGH
Sbjct: 9   SEVSAPVRRVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALDGH 68

Query: 72  EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC 131
           E+VSVTCGADHTTAYSES  QVYSWGWGDFGRLGHGNSSDLFTP PIKALH LR+KQIAC
Sbjct: 69  EVVSVTCGADHTTAYSESFTQVYSWGWGDFGRLGHGNSSDLFTPQPIKALHGLRIKQIAC 128

Query: 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAV 191
           GDSHCLAVT++GEVQSWGRNQNGQLGLGTTEDSLVPQK+QAF+GVS+KMVAAGAEH+ AV
Sbjct: 129 GDSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSVKMVAAGAEHTAAV 188

Query: 192 AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS 251
            EDGELYGWGWGRYGNLGLGDRNDRL+PEKV+TV+  KMV VACGWRHTISVSSSG LY+
Sbjct: 189 TEDGELYGWGWGRYGNLGLGDRNDRLVPEKVSTVEGVKMVKVACGWRHTISVSSSGGLYT 248

Query: 252 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 311
           YGWSKYGQLGHGDF+DHL P +LEAL+E+ IS+ISGGWRHTMA+TSDGKLYGWGWNKFGQ
Sbjct: 249 YGWSKYGQLGHGDFEDHLTPHKLEALQENLISEISGGWRHTMALTSDGKLYGWGWNKFGQ 308

Query: 312 VGVGDNVDHCSPVQVKFPLDQ----ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSD 367
           VGVGDNVDHCSPVQVKFP +Q    ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES D
Sbjct: 309 VGVGDNVDHCSPVQVKFPHEQKVVHISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESID 368

Query: 368 RNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNG 427
           RN PK+IE LS DGS GQ I +SK DPS+G+ WVSPSERYAVVPD+T   QT V+ +GNG
Sbjct: 369 RNIPKMIEVLSADGSGGQQIETSKVDPSTGRIWVSPSERYAVVPDETGSTQTGVSVKGNG 428

Query: 428 SEVSVPEGDVKRIRV 442
           ++ SVPE DVKRIR+
Sbjct: 429 NDASVPESDVKRIRL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449457319|ref|XP_004146396.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224093583|ref|XP_002309939.1| predicted protein [Populus trichocarpa] gi|222852842|gb|EEE90389.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297797389|ref|XP_002866579.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata] gi|297312414|gb|EFH42838.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237540|ref|NP_201191.1| protein UV-B resistance 8 [Arabidopsis thaliana] gi|10177674|dbj|BAB11034.1| UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6 [Arabidopsis thaliana] gi|23308399|gb|AAN18169.1| At5g63860/MGI19_6 [Arabidopsis thaliana] gi|332010422|gb|AED97805.1| protein UV-B resistance 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance protein UVR8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282233|dbj|BAJ33982.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|255563857|ref|XP_002522929.1| uvb-resistance protein uvr8, putative [Ricinus communis] gi|223537856|gb|EEF39472.1| uvb-resistance protein uvr8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147782117|emb|CAN67581.1| hypothetical protein VITISV_010346 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508943|ref|XP_003523212.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.959 0.963 0.806 1.6e-196
UNIPROTKB|E2RFW5 1049 HERC4 "Uncharacterized protein 0.680 0.286 0.371 1.1e-53
UNIPROTKB|E2RFV1 1057 HERC4 "Uncharacterized protein 0.680 0.284 0.371 1.2e-53
UNIPROTKB|E1BAV2 1057 HERC4 "Uncharacterized protein 0.680 0.284 0.368 1.5e-53
UNIPROTKB|Q5GLZ8 1057 HERC4 "Probable E3 ubiquitin-p 0.904 0.378 0.336 1.8e-53
UNIPROTKB|G3MX12 4757 HERC2 "Uncharacterized protein 0.787 0.073 0.320 3.3e-43
UNIPROTKB|E1B782 4847 HERC2 "Uncharacterized protein 0.787 0.071 0.320 3.4e-43
RGD|1310971 1057 Herc4 "HECT and RLD domain con 0.911 0.381 0.329 1.7e-52
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.787 0.071 0.310 1.9e-42
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.787 0.071 0.310 1.9e-42
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1903 (674.9 bits), Expect = 1.6e-196, P = 1.6e-196
 Identities = 347/430 (80%), Positives = 385/430 (89%)

Query:    17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
             P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct:    13 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 72

Query:    77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
             TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct:    73 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 132

Query:   137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
             LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct:   133 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 192

Query:   197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256
             LYGWGWGRYGNLGLGDR DRL+PE+V +   EKM MVACGWRHTISVS SG LY+YGWSK
Sbjct:   193 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK 252

Query:   257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
             YGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGVG+
Sbjct:   253 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 312

Query:   317 NVDHCSPVQVKFPLDQ----ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
             N+D CSPVQV+FP DQ    +SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN PK
Sbjct:   313 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPK 372

Query:   373 IIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPDDTVQGQTSVTGRGNGSEVSV 432
             IIE LS+DG+ GQ+I SS  DPSSGK+WVSP+ERYAVVPD+T  G T  + +GNG ++SV
Sbjct:   373 IIEALSVDGASGQHIESSNIDPSSGKSWVSPAERYAVVPDET--GLTDGSSKGNGGDISV 430

Query:   433 PEGDVKRIRV 442
             P+ DVKR+R+
Sbjct:   431 PQTDVKRVRI 440
GO:0005737 "cytoplasm" evidence=ISM
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS
GO:0009411 "response to UV" evidence=IMP
GO:0003682 "chromatin binding" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0010224 "response to UV-B" evidence=IEP;IGI
GO:0000785 "chromatin" evidence=IDA
GO:0009649 "entrainment of circadian clock" evidence=IMP
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0042803 "protein homodimerization activity" evidence=IDA
UNIPROTKB|E2RFW5 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFV1 HERC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAV2 HERC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5GLZ8 HERC4 "Probable E3 ubiquitin-protein ligase HERC4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1B782 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310971 Herc4 "HECT and RLD domain containing E3 ubiquitin protein ligase 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN03UVR8_ARATHNo assigned EC number0.79370.98640.9909yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-48
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-43
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-40
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-15
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-12
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 9e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  172 bits (437), Expect = 2e-48
 Identities = 104/368 (28%), Positives = 155/368 (42%), Gaps = 36/368 (9%)

Query: 40  VCSWGRGEDGQLGHG-DAEDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSW 96
           V SWG     +LG G D      P        D   I+ + CG +H+         +YSW
Sbjct: 70  VYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGN-LYSW 128

Query: 97  GWGDFGRLG---------HGNSSDLFT-----------PLPIKALHSLRVKQIACGDSHC 136
           G  D G LG           N    F            P    A   LRV ++ACG    
Sbjct: 129 GDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEIS 188

Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDS--LVPQKLQAFEGVS-IKMVAAGAEHSVAVAE 193
           + +T +G V SWG  + G+LG G+ ++S     Q          I  +AAGA+H +A+  
Sbjct: 189 VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTN 248

Query: 194 DGELYGWGWGRYGNLGLGDRNDRLIPEKVA-TVDREKMVMVACGWRHTISVSSSGRLYSY 252
           +G++YGWG  + G LG        +   V        +  VACG  H++++   G +Y++
Sbjct: 249 EGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAW 308

Query: 253 GWSKYGQLGHG----DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 308
           G + +GQLG G           P   + L    I  IS G  H++ +  DG LY +G   
Sbjct: 309 GVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGD 368

Query: 309 FGQVGVG-DNVDHCSPVQVKFPLD---QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE 364
            GQ+G+  +     S            Q++CG  H +A T+  +V+SWG G +G LG+G 
Sbjct: 369 RGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGP 428

Query: 365 SSDRNSPK 372
                   
Sbjct: 429 KEADVLVP 436

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.89
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.88
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.23
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.11
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.11
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.1
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.0
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.97
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.21
KOG0315311 consensus G-protein beta subunit-like protein (con 92.1
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.03
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 90.4
KOG3669 705 consensus Uncharacterized conserved protein, conta 89.42
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.49
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 84.94
KOG4693392 consensus Uncharacterized conserved protein, conta 82.41
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 81.58
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 80.98
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-53  Score=399.61  Aligned_cols=354  Identities=31%  Similarity=0.561  Sum_probs=291.6

Q ss_pred             ecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCc-ccceeecCC--CCCcEEEEEccCCeeEEEEccCCeEEEEecCCCC
Q 013457           26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG  102 (442)
Q Consensus        26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~-~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~g  102 (442)
                      .-..|...++.-..||+||+|...|||++..+.. ..|++.+.+  +...|++++||+.|+++|++| |+||+||.|..|
T Consensus        56 ~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G  134 (476)
T COG5184          56 IINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDG  134 (476)
T ss_pred             hcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCccc
Confidence            3456667888999999999999999999988765 899998877  567899999999999999999 999999999999


Q ss_pred             ccCCCCC----------------CCceeeEEecc----cCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCC
Q 013457          103 RLGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE  162 (442)
Q Consensus       103 qlG~~~~----------------~~~~~p~~v~~----~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~  162 (442)
                      +||....                ....+|..+..    ....++++++||++++++|+++|+||+||....+.++.+...
T Consensus       135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~  214 (476)
T COG5184         135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK  214 (476)
T ss_pred             ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence            9998761                11345665555    234489999999999999999999999999888888877444


Q ss_pred             Cccc----ceeeecccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeC-CceEEEEEecC
Q 013457          163 DSLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-REKMVMVACGW  237 (442)
Q Consensus       163 ~~~~----p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~I~~G~  237 (442)
                      .+..    +.++... ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+. -..|..|+||.
T Consensus       215 ~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~  293 (476)
T COG5184         215 NSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGK  293 (476)
T ss_pred             ccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCc
Confidence            3322    3333222 4579999999999999999999999999999999988776666555554332 23478899999


Q ss_pred             ceEEEEeCCCCEEEEeCCCCCcCCCCCCC----CccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccc
Q 013457          238 RHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG  313 (442)
Q Consensus       238 ~~s~~lt~~G~vy~~G~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG  313 (442)
                      +|+++|+++|++|+||.|.+||||.+...    ....|.....+....|..|++|..|+++|..+|.||+||++..+|||
T Consensus       294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg  373 (476)
T COG5184         294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG  373 (476)
T ss_pred             ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence            99999999999999999999999998321    23346666677777799999999999999999999999999999999


Q ss_pred             cCC--CCCcccceEec--cCCCcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCC-CCCCCcEEeccCCCCC
Q 013457          314 VGD--NVDHCSPVQVK--FPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES-SDRNSPKIIEPLSLDG  381 (442)
Q Consensus       314 ~g~--~~~~~~p~~v~--~~~~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~-~~~~~P~~i~~l~~~~  381 (442)
                      ..+  +.....|.++.  ....+++||..|+++.+++|+||+||.|++||||.|+. .+...|+.|.+...++
T Consensus       374 ~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~  446 (476)
T COG5184         374 IQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSG  446 (476)
T ss_pred             CcccceeecCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCC
Confidence            988  55556666665  33459999999999999999999999999999999975 6778888887633333

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 0.0
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 8e-23
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 0.0
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 0.0
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-180
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-23
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-39
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-38
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 2e-12
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 4e-38
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-38
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-24
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-23
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 1e-19
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 1e-07
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 1e-07
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 1e-07
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/393 (82%), Positives = 356/393 (90%), Gaps = 4/393 (1%)
Query: 17  PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
           P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 14  PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 73
Query: 77  TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
           TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 74  TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
           LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYSYGWSK 256
           LYGWGWGRYGNLGLGDR DRL+PE+V +   EKM MVACGWRHTISVS SG LY+YGWSK
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSK 253
Query: 257 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 316
           YGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGVG+
Sbjct: 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313
Query: 317 NVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 372
           N+D CSPVQV+FP D    Q+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN PK
Sbjct: 314 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPK 373
Query: 373 IIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 405
           IIE LS+DG+ GQ+I SS  DPSSGK+WVSP+E
Sbjct: 374 IIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-171
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-148
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-125
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-112
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-94
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-80
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-132
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-98
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-82
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-68
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-54
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 7e-40
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-32
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-126
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-104
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-103
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-83
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-71
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-97
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-94
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-65
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-59
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-57
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  484 bits (1248), Expect = e-171
 Identities = 329/402 (81%), Positives = 359/402 (89%), Gaps = 4/402 (0%)

Query: 8   SEAASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA 67
             AA    AP R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSA
Sbjct: 5   DMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 64

Query: 68  LDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVK 127
           LDGH+IVSVTCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+K
Sbjct: 65  LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIK 124

Query: 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187
           QIACGDSHCLAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 184

Query: 188 SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSG 247
           + AV EDG+LYGWGWGRYGNLGLGDR DRL+PE+V +   EKM MVACGWRHTISVS SG
Sbjct: 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG 244

Query: 248 RLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 307
            LY+YGWSKYGQLGHGD +DHL+P +LEAL  SFISQISGGWRHTMA+TSDGKLYGWGWN
Sbjct: 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304

Query: 308 KFGQVGVGDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGHG 363
           KFGQVGVG+N+D CSPVQV+FP D    Q+SCGWRHTLAVTER NVF+WGRGTNGQLG G
Sbjct: 305 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIG 364

Query: 364 ESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 405
           ES DRN PKIIE LS+DG+ GQ+I SS  DPSSGK+WVSP+E
Sbjct: 365 ESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.09
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.51
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.28
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 95.9
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.78
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.33
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.22
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.21
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 93.6
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 93.42
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.7
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 92.64
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 92.48
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 90.24
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 89.92
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 88.58
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 86.77
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 86.47
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 85.99
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 85.53
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 84.71
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 83.95
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 82.22
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 82.01
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 81.76
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 81.45
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.2e-82  Score=635.67  Aligned_cols=394  Identities=83%  Similarity=1.407  Sum_probs=365.1

Q ss_pred             ccCCCCCCCEEEEEecCCceEEEEeCCeEEEEeCCCCCccCCCCCCCcccceeecCCCCCcEEEEEccCCeeEEEEccCC
Q 013457           12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM   91 (442)
Q Consensus        12 ~~~~~~~~~i~~is~G~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G   91 (442)
                      ++..+++.+|++|+||..|+++|+++|+||+||+|.+||||+++.+++..|+++..+.+.+|++|+||..|+++|+++.+
T Consensus         9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg   88 (406)
T 4d9s_A            9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM   88 (406)
T ss_dssp             ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred             ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence            44567788999999999999999999999999999999999999999999999999988899999999999999999834


Q ss_pred             eEEEEecCCCCccCCCCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCcccceeee
Q 013457           92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ  171 (442)
Q Consensus        92 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~  171 (442)
                      +||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.
T Consensus        89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  168 (406)
T 4d9s_A           89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ  168 (406)
T ss_dssp             EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred             EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcEEEEEeCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCeeeeeEeeeeCCceEEEEEecCceEEEEeCCCCEEE
Q 013457          172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDREKMVMVACGWRHTISVSSSGRLYS  251 (442)
Q Consensus       172 ~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~G~vy~  251 (442)
                      .+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+...+|++|+||.+|+++|+++|+||+
T Consensus       169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~  248 (406)
T 4d9s_A          169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYT  248 (406)
T ss_dssp             GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred             ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999988888899999999999999999999999


Q ss_pred             EeCCCCCcCCCCCCCCccceeEecccCCCcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCCcccceEeccCC-
Q 013457          252 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-  330 (442)
Q Consensus       252 ~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-  330 (442)
                      ||.|.+||||.++..+...|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|+++..+. 
T Consensus       249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~  328 (406)
T 4d9s_A          249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD  328 (406)
T ss_dssp             EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG
T ss_pred             eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC
Confidence            9999999999999989999999999999899999999999999999999999999999999999998888999987553 


Q ss_pred             ---CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCCCCCCceeEeecccccCCCCCcccCCCC
Q 013457          331 ---DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE  405 (442)
Q Consensus       331 ---~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (442)
                         .+|+||.+|++||+++|+||+||+|++||||+|+..++..|..|+.|..++....+++.+......++.|++++|
T Consensus       329 ~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~  406 (406)
T 4d9s_A          329 QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE  406 (406)
T ss_dssp             CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred             CcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence               389999999999999999999999999999999999999999999999999999999999999999999998875
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-46
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-39
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-23
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-21
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-16
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-08
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 6e-46
 Identities = 108/386 (27%), Positives = 162/386 (41%), Gaps = 26/386 (6%)

Query: 27  GASHSVALLSGNIVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTA 85
             SH        +V + G+G+ GQLG G+   +R  P  +S  +   +V    G  HT  
Sbjct: 4   KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVC 61

Query: 86  YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEV 145
            S+S  QVYS+G  D G LG   S +    +P K     +V Q++ GDSH  A+T +G V
Sbjct: 62  LSKS-GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRV 120

Query: 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204
             WG  ++    +G  E           +  V +  VA+G +H V +  DG+LY  G G 
Sbjct: 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 180

Query: 205 YGNLGLGDRNDRLIPEKVATVDR----------------EKMVMVACGWRHTISVSSSGR 248
            G LG           +                       +     CG   T ++S  G 
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 249 LYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 306
           +Y +G S Y QLG                          SGG  HT+ + S+GK Y  G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 307 NKFGQVGVGDNVDHCS-PVQVKFPLD--QISCGWRHTLAVTERQNVFSWGRGTNGQLGHG 363
            ++G++G+G+  +  S P  +        ++CG     AVT+   VF+WG GTN QLG G
Sbjct: 301 AEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTG 360

Query: 364 ESSDRNSPKIIEPLSLDGSKGQNIAS 389
           +  D  SP  +    L+     +++S
Sbjct: 361 QDEDAWSPVEMMGKQLENRVVLSVSS 386
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.26
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.1
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 93.51
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 90.63
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 90.55
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 89.28
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 87.5
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 84.82
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 80.12
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-60  Score=471.85  Aligned_cols=358  Identities=31%  Similarity=0.494  Sum_probs=301.8

Q ss_pred             CCceEEEEeCCeEEEEeCCCCCccCCCCCC-CcccceeecCCCCCcEEEEEccCCeeEEEEccCCeEEEEecCCCCccCC
Q 013457           28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAE-DRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGH  106 (442)
Q Consensus        28 ~~~~~~l~~~g~v~~wG~n~~gqLG~g~~~-~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~G~vy~wG~n~~gqlG~  106 (442)
                      -.|+++++++|+||+||.|.+||||+++.. .+..|.+|+.+.  +|++|+||..|++||+++ |+||+||.|.+||||+
T Consensus         5 ~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~-G~vy~wG~n~~GQLG~   81 (401)
T d1a12a_           5 VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKS-GQVYSFGCNDEGALGR   81 (401)
T ss_dssp             CCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCS
T ss_pred             eeEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCC-CEEEEEeCCCCCCCCc
Confidence            369999999999999999999999998764 688999998776  699999999999999999 9999999999999999


Q ss_pred             CCCCCceeeEEecccCCCcEEEEEeCCceEEEEEcCCeEEEEeCCCCCCcCCCCCCCc-ccceeeecccCCcEEEEEeCC
Q 013457          107 GNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS-LVPQKLQAFEGVSIKMVAAGA  185 (442)
Q Consensus       107 ~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~v~~~~~~~i~~ia~G~  185 (442)
                      +.......|.+.......+|++|+||..|+++++++|+||+||.+...+.+....... ..+..+......+|++|++|.
T Consensus        82 g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~  161 (401)
T d1a12a_          82 DTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN  161 (401)
T ss_dssp             CCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred             ccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence            9888877777777777889999999999999999999999999887666554433322 223334444566899999999


Q ss_pred             CeEEEEecCCcEEEEeCCCCCCcCCCCCCC-----------eeeeeEee-----eeCCceEEEEEecCceEEEEeCCCCE
Q 013457          186 EHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVA-----TVDREKMVMVACGWRHTISVSSSGRL  249 (442)
Q Consensus       186 ~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~-----------~~~p~~v~-----~~~~~~i~~I~~G~~~s~~lt~~G~v  249 (442)
                      .|+++++++|++|+||.|.+||||......           ...|..+.     .....+|.+|+||.+|+++|+++|++
T Consensus       162 ~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v  241 (401)
T d1a12a_         162 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV  241 (401)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCE
T ss_pred             cceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeE
Confidence            999999999999999999999999764321           11233332     22335799999999999999999999


Q ss_pred             EEEeCCCCCcCCCCCCCCccceeEecccCC--CcEEEEEcCCCceEEEeCCCcEEEeecCCCcccccCCCCC-cccceEe
Q 013457          250 YSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD-HCSPVQV  326 (442)
Q Consensus       250 y~~G~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~-~~~p~~v  326 (442)
                      |.||.|.++++|.........+..+..+..  ..++.|++|..|+++++++|+||+||.|.+||||.++... ...|.++
T Consensus       242 ~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i  321 (401)
T d1a12a_         242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI  321 (401)
T ss_dssp             EEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEEC
T ss_pred             eeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEc
Confidence            999999999999998888777777776554  4599999999999999999999999999999999987544 4678887


Q ss_pred             ccCC--CcEEecCceEEEEEcCCCEEEEeCCCCCCCCCCCCCCCCCcEEeccCCCCCCceeEee
Q 013457          327 KFPL--DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIA  388 (442)
Q Consensus       327 ~~~~--~~i~~G~~h~~alt~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~  388 (442)
                      +...  .+|+||.+|++||+++|+||+||+|.+||||+|++.++..|++|..+...+.....++
T Consensus       322 ~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~  385 (401)
T d1a12a_         322 SRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVS  385 (401)
T ss_dssp             CSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEE
T ss_pred             CCCCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEE
Confidence            7643  3999999999999999999999999999999999999999999876554554444443
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure