Citrus Sinensis ID: 013458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC
ccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEEccccccEEEEEEEEcccccHHHHcHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEEcccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcccccccEEc
ccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccccEEEEEEEcccEEEEEEEEccccccccccHHHHHHEEEEEEEEcccccEEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcHHHcHEEEEc
minkkmfnggrVEVWTCVNfstrlnrdvpfQFCQGLVDMcnskgmvfnprpvipisssnpnQIEKALVDVHNRTAQQGKQLQMLIIILpdvsgsygrIKRVCETELgivsqccqprqasrLNMQYFENVALKINVKVGGRNTVLVDAVqkriplvtdrptiifgadvthpqpgedsspsIAAVVASmdwpevtkyRGLVSAQAHHEEIIQDLYkstqdpqrglvhGGMIRELLIAFRRstnfkphriifyrdgvsegqFSQVLLHEMNAIRQACAsleegyappvTFVVVQKrhhtrlfpadhnrrdltdrsgnilpgtvfdthichptefdfylnshagiqgtsrpthyhvlydenrfsaddfQVLTNNLCytyarctrsvsivppaYYAHLAAFRARYyiedetsaggstggsrstadrnlairplpvikdnvkdvmfyc
minkkmfnggrvEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVdavqkriplvtdrptIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTrlfpadhnrrdltdrsgNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDEtsaggstggsrstadrnlairplpvikdnvkdVMFYC
MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIedetsaggstggsrstadrNLAIRPLPVIKDNVKDVMFYC
******FNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPI*********KALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVT***********IAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE***************************************
MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPG***SPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD***********NILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY*****************************VIKDNVKDVMFYC
MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE************TADRNLAIRPLPVIKDNVKDVMFYC
**NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ*GEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAD*********SGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED********************IRPLPVIKDNVKDVMFYC
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MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
Q9SJK3997 Protein argonaute 5 OS=Ar yes no 0.990 0.439 0.737 0.0
Q851R21058 Protein argonaute MEL1 OS yes no 0.995 0.415 0.725 0.0
O043791048 Protein argonaute 1 OS=Ar no no 1.0 0.421 0.683 0.0
Q7XSA21118 Protein argonaute 1B OS=O no no 1.0 0.395 0.662 1e-179
Q6EU141082 Protein argonaute 1A OS=O no no 1.0 0.408 0.663 1e-179
Q9XGW1988 Protein argonaute 10 OS=A no no 1.0 0.447 0.665 1e-178
Q6K9721011 Protein argonaute 1C OS=O no no 0.995 0.435 0.666 1e-177
Q7Y0011049 Protein argonaute 12 OS=O no no 0.990 0.417 0.648 1e-176
Q69VD5979 Protein argonaute PNH1 OS no no 0.997 0.450 0.667 1e-174
Q5Z5B21038 Protein argonaute 1D OS=O no no 1.0 0.425 0.655 1e-173
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/442 (73%), Positives = 364/442 (82%), Gaps = 4/442 (0%)

Query: 1   MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNP 60
           MI+KKM NG +V  WTCV+FSTR++R +P +FC+ L+ MC SKGM F P+P IP  S  P
Sbjct: 560 MIDKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPP 619

Query: 61  NQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASR 120
             IE+AL+D+H R       LQ+LI+ILPDV+GSYG+IKR+CETELGIVSQCCQPRQ ++
Sbjct: 620 EHIEEALLDIHKRAPG----LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNK 675

Query: 121 LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSI 180
           LN QY ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSI
Sbjct: 676 LNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSI 735

Query: 181 AAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 240
           AAVVASMDWPE+ KYRGLVSAQAH EEIIQDLYK  QDPQRGLVH G+IRE  IAFRR+T
Sbjct: 736 AAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRAT 795

Query: 241 NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 300
              P RIIFYRDGVSEGQFSQVLLHEM AIR+AC SL+E Y P VTFV+VQKRHHTRLFP
Sbjct: 796 GQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFP 855

Query: 301 ADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFS 360
             H  RD+TD+SGNI PGTV DT ICHP EFDFYLNSHAGIQGTSRP HYHVL DEN F+
Sbjct: 856 EQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFT 915

Query: 361 ADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTAD 420
           AD  Q+LTNNLCYTYARCT+SVSIVPPAYYAHLAAFRARYY+E E S GGS+    ST  
Sbjct: 916 ADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTG 975

Query: 421 RNLAIRPLPVIKDNVKDVMFYC 442
               I  LP IKDNVK+VMFYC
Sbjct: 976 VGQVISQLPAIKDNVKEVMFYC 997
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
297734872 1032 unnamed protein product [Vitis vinifera] 1.0 0.428 0.799 0.0
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 1.0 0.425 0.799 0.0
224054242 904 argonaute protein group [Populus trichoc 0.990 0.484 0.794 0.0
224106886 987 argonaute protein group [Populus trichoc 0.984 0.440 0.787 0.0
255565533 987 eukaryotic translation initiation factor 0.990 0.443 0.799 0.0
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.977 0.439 0.766 0.0
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 0.990 0.437 0.755 0.0
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.977 0.437 0.754 0.0
30683679 997 Argonaute family protein [Arabidopsis th 0.990 0.439 0.737 0.0
4510428 997 Argonaute (AGO1)-like protein [Arabidops 0.990 0.439 0.737 0.0
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/449 (79%), Positives = 399/449 (88%), Gaps = 7/449 (1%)

Query: 1    MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNP 60
            MI+KKM NGG V+ WTC+NFS R+++D+P  FC+ LV+MC SKGMVFNP P++PI S++P
Sbjct: 584  MIDKKMVNGGTVQFWTCLNFSFRVHQDLPSGFCRELVNMCVSKGMVFNPNPLLPIQSAHP 643

Query: 61   NQIEKALVDVHNRT-------AQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCC 113
            NQIEK LVDVH ++        Q GKQLQ+LIIILPDV+GSYG+IKR+CETELGIVSQCC
Sbjct: 644  NQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIILPDVTGSYGKIKRICETELGIVSQCC 703

Query: 114  QPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPG 173
            QP QAS+LN QYFENVALKINVKVGGRNTVL DA+Q++IPLV+D PTIIFGADVTHPQPG
Sbjct: 704  QPSQASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSDLPTIIFGADVTHPQPG 763

Query: 174  EDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELL 233
            EDSSPSIAAVVASMDWPEVTKYRGLVSAQ H EEIIQDLYK+T DP +G+ HGGMIRELL
Sbjct: 764  EDSSPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTADPHKGVTHGGMIRELL 823

Query: 234  IAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 293
            IAFRRST +KP RIIFYRDGVSEGQFSQVLLHEM++IR+ACASLEEGY PPVTFVVVQKR
Sbjct: 824  IAFRRSTGYKPSRIIFYRDGVSEGQFSQVLLHEMDSIRKACASLEEGYLPPVTFVVVQKR 883

Query: 294  HHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVL 353
            HHTR FP+DH  RDLTDRSGNILPGTV DT ICHPTEFDFYLNSHAGIQGTSRPTHYHVL
Sbjct: 884  HHTRFFPSDHRSRDLTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVL 943

Query: 354  YDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTG 413
            YDEN+F+AD  Q+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE +TS  GS  
Sbjct: 944  YDENKFTADILQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDSGSGS 1003

Query: 414  GSRSTADRNLAIRPLPVIKDNVKDVMFYC 442
            G RST +RNL +R LP +K+NVKDVMFYC
Sbjct: 1004 GDRSTRERNLEVRLLPAVKENVKDVMFYC 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.990 0.439 0.721 8.6e-175
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.995 0.415 0.702 4.1e-168
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.997 0.450 0.651 6.1e-158
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 1.0 0.447 0.656 6.1e-158
UNIPROTKB|Q75HC21048 AGO7 "Protein argonaute 7" [Or 0.941 0.396 0.437 1.6e-88
UNIPROTKB|F1PGN2794 EIF2C4 "Uncharacterized protei 0.880 0.489 0.470 5.4e-86
UNIPROTKB|Q9HCK5861 EIF2C4 "Protein argonaute-4" [ 0.880 0.451 0.470 5.4e-86
UNIPROTKB|F1SV64861 EIF2C4 "Uncharacterized protei 0.880 0.451 0.470 5.4e-86
UNIPROTKB|F1LUQ5860 Eif2c4 "Protein Eif2c4" [Rattu 0.880 0.452 0.470 1.4e-85
UNIPROTKB|F1P3Z1847 EIF2C4 "Protein argonaute-4" [ 0.880 0.459 0.467 1.8e-85
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1698 (602.8 bits), Expect = 8.6e-175, P = 8.6e-175
 Identities = 319/442 (72%), Positives = 356/442 (80%)

Query:     1 MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSSNP 60
             MI+KKM NG +V  WTCV+FSTR++R +P +FC+ L+ MC SKGM F P+P IP  S  P
Sbjct:   560 MIDKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPP 619

Query:    61 NQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASR 120
               IE+AL+D+H R    G  LQ+LI+ILPDV+GSYG+IKR+CETELGIVSQCCQPRQ ++
Sbjct:   620 EHIEEALLDIHKRAP--G--LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNK 675

Query:   121 LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSI 180
             LN QY ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSI
Sbjct:   676 LNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSI 735

Query:   181 AAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST 240
             AAVVASMDWPE+ KYRGLVSAQAH EEIIQDLYK  QDPQRGLVH G+IRE  IAFRR+T
Sbjct:   736 AAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRAT 795

Query:   241 NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 300
                P RIIFYRDGVSEGQFSQVLLHEM AIR+AC SL+E Y P VTFV+VQKRHHTRLFP
Sbjct:   796 GQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFP 855

Query:   301 ADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFS 360
               H  RD+TD+SGNI PGTV DT ICHP EFDFYLNSHAGIQGTSRP HYHVL DEN F+
Sbjct:   856 EQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPAHYHVLLDENGFT 915

Query:   361 ADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIXXXXXXXXXXXXXXXXXX 420
             AD  Q+LTNNLCYTYARCT+SVSIVPPAYYAHLAAFRARYY+                  
Sbjct:   916 ADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEMSDGGSSRSRSSTTG 975

Query:   421 XNLAIRPLPVIKDNVKDVMFYC 442
                 I  LP IKDNVK+VMFYC
Sbjct:   976 VGQVISQLPAIKDNVKEVMFYC 997
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q75HC2 AGO7 "Protein argonaute 7" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGN2 EIF2C4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q851R2MEL1_ORYSJNo assigned EC number0.72500.99540.4158yesno
Q9SJK3AGO5_ARATHNo assigned EC number0.73750.99090.4393yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 0.0
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 1e-118
pfam02171296 pfam02171, Piwi, Piwi domain 1e-117
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-113
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 1e-71
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 8e-70
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  546 bits (1408), Expect = 0.0
 Identities = 202/409 (49%), Positives = 256/409 (62%), Gaps = 34/409 (8%)

Query: 1   MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQ----FCQGLVDMCNSKGMVFNPRPVIPIS 56
           +  KK   GG +  W  +NF+              F   LV      G+      +    
Sbjct: 45  LRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNFVDQLVKTVIGAGI-----NITTAI 99

Query: 57  SSNPNQIEKALVDVHNRTAQQGKQLQMLIIILPD-VSGSYGRIKRVCETELGIVSQCCQP 115
           +S   ++E+    +      +G+  Q++++ILP   S  YGRIKR+ +TELGI +QC   
Sbjct: 100 ASVEGRVEELFAKLKQ---AKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLA 156

Query: 116 RQASR-LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE 174
           ++ ++  N QYF NVALKIN+K+GG N  L        PL+T  PT++ GADVTHP PG+
Sbjct: 157 KKVTKKGNPQYFANVALKINLKLGGINHSLEP---DIRPLLTKEPTMVLGADVTHPSPGD 213

Query: 175 -DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELL 233
              +PSIAAVVAS+DW    +Y   V  Q+H +EII DL               M+RELL
Sbjct: 214 PAGAPSIAAVVASVDWHL-AQYPASVRLQSHRQEIIDDL-------------ESMVRELL 259

Query: 234 IAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 293
            AF+++T   P RII+YRDGVSEGQF+QVL  E+ AIR+ACA L  GY P +TF+VVQKR
Sbjct: 260 RAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKR 319

Query: 294 HHTRLFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVL 353
           HHTR FP D +  D   ++GN+ PGTV D  I HP EFDFYL SHAGIQGT+RPTHYHVL
Sbjct: 320 HHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVL 377

Query: 354 YDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 402
           +DE  F+AD+ Q LT NLCYTYARCTRSVSI PPAYYAHLAA RAR Y+
Sbjct: 378 WDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
PLN03202900 protein argonaute; Provisional 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.6
PF13032138 DUF3893: Domain of unknown function (DUF3893) 95.52
PRK11617224 endonuclease V; Provisional 93.97
cd06559208 Endonuclease_V Endonuclease_V, a DNA repair enzyme 93.64
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 91.52
COG1515212 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [ 86.77
TIGR00194574 uvrC excinuclease ABC, C subunit. This family cons 86.61
PRK12306519 uvrC excinuclease ABC subunit C; Reviewed 83.27
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.1e-95  Score=802.27  Aligned_cols=420  Identities=42%  Similarity=0.714  Sum_probs=353.8

Q ss_pred             CCCCCcccCcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCCeeccCC------CChhHHHHHHHHHHHHH
Q 013458            1 MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISS------SNPNQIEKALVDVHNRT   74 (442)
Q Consensus         1 m~~~~f~~~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~------~~~~~~~~~l~~~~~~~   74 (442)
                      |++++|++|+++++|++++|++.   ..++.|++.|.+.|+.+||.+..|+......      ...+.++..++.+.++.
T Consensus       471 ~~~~kf~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  547 (900)
T PLN03202        471 FNNKKLVEPTKIERWAVVNFSAR---CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL  547 (900)
T ss_pred             cCCCEecCCCccceEEEEEecCc---hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc
Confidence            57889999999999999988643   3589999999999999999998764321111      11233455555444433


Q ss_pred             hhcCCCceEEEEEeCCC-CCh-hhHHHHHhhhhcCceeeeecccccccchhhHHHHHHHHHHhhcCCeeeeeccccccCC
Q 013458           75 AQQGKQLQMLIIILPDV-SGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRI  152 (442)
Q Consensus        75 ~~~~~~~~~vlvilp~~-~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~~~~ni~~kinaKlGG~n~~l~~~~~~~~  152 (442)
                         ...++|+|||+|++ +.+ |+.||++|+.+.||+||||...   +.++|++.||++|||+||||+||.+..+....+
T Consensus       548 ---~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i  621 (900)
T PLN03202        548 ---PGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSI  621 (900)
T ss_pred             ---cCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccC
Confidence               25799999999974 455 9999999999999999999654   347899999999999999999999875534457


Q ss_pred             CccCCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHH
Q 013458          153 PLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIREL  232 (442)
Q Consensus       153 p~~~~~~tmiiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~  232 (442)
                      |++...+|||||+||+|++++....||+||+|||+|+..+++|++.++.|..++|++++|+....+    ..+++|+.++
T Consensus       622 ~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~  697 (900)
T PLN03202        622 PLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIREL  697 (900)
T ss_pred             ccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHH
Confidence            887778999999999999987645799999999999667999999999999999999987432222    1248999999


Q ss_pred             HHHHHHhc-CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCC
Q 013458          233 LIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDR  311 (442)
Q Consensus       233 L~~f~~~~-g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~  311 (442)
                      |..|++.+ |.+|++|||||||||||||.+|+++|+++|++||++++++|+|+||||+|+||||+|||+.+        .
T Consensus       698 L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~  769 (900)
T PLN03202        698 LLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------S  769 (900)
T ss_pred             HHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------C
Confidence            99999865 69999999999999999999999999999999999998889999999999999999999863        2


Q ss_pred             CCCCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHH
Q 013458          312 SGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYA  391 (442)
Q Consensus       312 ~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA  391 (442)
                      .+||+||||||++||+|..+||||+||.++|||+||+||+||+||+++++|+||+|||+|||+|+||+++||+|+|+|||
T Consensus       770 ~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYA  849 (900)
T PLN03202        770 PDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYA  849 (900)
T ss_pred             CCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhccccCCCCCCCCCC-CCccccccCCCCccccccCCCCceeC
Q 013458          392 HLAAFRARYYIEDETSAGGSTGGSR-STADRNLAIRPLPVIKDNVKDVMFYC  442 (442)
Q Consensus       392 ~~~a~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~m~~~  442 (442)
                      |++|.|+|+|+..+...++++++++ .+..+. ....+..+|+|++++||||
T Consensus       850 hlla~r~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        850 HLAAAQMGQFMKFEDMSETSSSHGGITSAGAV-PVPELPRLHENVASSMFFC  900 (900)
T ss_pred             HHHHHHhhhhccccCCccccccccccCCCCcc-ccccccccchhhcCCeeeC
Confidence            9999999999986543333322222 111111 1345678999999999998

>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>PRK11617 endonuclease V; Provisional Back     alignment and domain information
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00194 uvrC excinuclease ABC, C subunit Back     alignment and domain information
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-102
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 1e-102
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 4e-51
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 8e-49
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 9e-44
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 5e-41
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-40
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 3e-40
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 9e-39
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 3e-29
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 2e-11
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 5e-11
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 2e-10
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 4e-08
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/404 (50%), Positives = 251/404 (62%), Gaps = 25/404 (6%)
Query: 1   MINKKMFNGGRVEVWTCVNFS-TRLNRDVPFQ-FCQGLVDMCNSKGMVFNPRPVIPISSS 58
           M NK+   G  ++VW    F+  R   +V  + F + L  +    GM    +P     + 
Sbjct: 439 MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 498
Query: 59  NPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQA 118
             + +E     + N  A     LQ++++ILP  +  Y  +KRV +T LG+ +QC Q +  
Sbjct: 499 GADSVEPMFRHLKNTYAG----LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNV 554
Query: 119 SRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSP 178
            R   Q   N+ LKINVK+GG N +L+   Q R P V  +P I  GADVTHP  G+   P
Sbjct: 555 QRTTPQTLSNLCLKINVKLGGVNNILLP--QGRPP-VFQQPVIFLGADVTHPPAGDGKKP 611
Query: 179 SIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238
           SIAAVV SMD     +Y   V  Q H +EIIQDL               M+RELLI F +
Sbjct: 612 SIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYK 657
Query: 239 STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRL 298
           ST FKP RIIFYRDGVSEGQF QVL HE+ AIR+AC  LE+ Y P +TF+VVQKRHHTRL
Sbjct: 658 STRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRL 717
Query: 299 FPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENR 358
           F  D N R    +SGNI  GT  DT I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NR
Sbjct: 718 FCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNR 775
Query: 359 FSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 402
           FS+D+ Q+LT  LC+TY RCTRSVSI  PAYYAHL AFRARY++
Sbjct: 776 FSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHL 819
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-154
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 1e-146
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-129
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 1e-113
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 6e-93
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 5e-78
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 1e-63
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 8e-60
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 8e-48
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 1e-43
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-41
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 5e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  458 bits (1178), Expect = e-154
 Identities = 205/445 (46%), Positives = 262/445 (58%), Gaps = 27/445 (6%)

Query: 1   MINKKMFNGGRVEVWTCVNFST--RLNRDVPFQFCQGLVDMCNSKGMVFNPRPVIPISSS 58
           M NK+   G  ++VW    F+   +        F + L  +    GM    +P     + 
Sbjct: 439 MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 498

Query: 59  NPNQIEKALVDVHNRTAQQGKQLQMLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQA 118
             + +E     + N        LQ++++ILP  +  Y  +KRV +T LG+ +QC Q +  
Sbjct: 499 GADSVEPMFRHLKN----TYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNV 554

Query: 119 SRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSP 178
            R   Q   N+ LKINVK+GG N +L+    +  P V  +P I  GADVTHP  G+   P
Sbjct: 555 QRTTPQTLSNLCLKINVKLGGVNNILLP---QGRPPVFQQPVIFLGADVTHPPAGDGKKP 611

Query: 179 SIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR 238
           SIAAVV SMD     +Y   V  Q H +EIIQDL               M+RELLI F +
Sbjct: 612 SIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYK 657

Query: 239 STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRL 298
           ST FKP RIIFYRDGVSEGQF QVL HE+ AIR+AC  LE+ Y P +TF+VVQKRHHTRL
Sbjct: 658 STRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRL 717

Query: 299 FPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENR 358
           F  D N  +   +SGNI  GT  DT I HPTEFDFYL SHAGIQGTSRP+HYHVL+D+NR
Sbjct: 718 FCTDKN--ERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNR 775

Query: 359 FSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE--TSAGGSTGGSR 416
           FS+D+ Q+LT  LC+TY RCTRSVSI  PAYYAHL AFRARY++ D+   SA GS    +
Sbjct: 776 FSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQ 835

Query: 417 STADRNLAIRPLPVIKDNVKDVMFY 441
           S    + A+     +  +    M++
Sbjct: 836 SNGRDHQALAKAVQVHQDTLRTMYF 860
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 100.0
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 100.0
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 100.0
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.96
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.96
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.95
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.95
2w36_A225 Endonuclease V; hypoxanthine, endonuclease, endonu 87.62
2nrr_A159 Uvrabc system protein C; UVRC, endonuclase, NER, h 83.41
3goc_A237 Endonuclease V; alpha-beta protein, structural gen 82.63
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
Probab=100.00  E-value=3.2e-102  Score=798.38  Aligned_cols=411  Identities=30%  Similarity=0.519  Sum_probs=293.6

Q ss_pred             CCCCCccc-CcccCeEEEEEecCCCCCChhHHHHHHHHHHHhhcCcccCCCC---eeccCCCChhHHHHHHHHHHHHHhh
Q 013458            1 MINKKMFN-GGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPRP---VIPISSSNPNQIEKALVDVHNRTAQ   76 (442)
Q Consensus         1 m~~~~f~~-~~~l~~W~iv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~   76 (442)
                      |+|++|++ ++++++|+++++++..+.+.++.|++.|.+.|+.+||.+..|.   .....+.....+  .++.+.+.   
T Consensus         2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~---   76 (437)
T 2yhb_A            2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM---   76 (437)
T ss_dssp             ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred             CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc---
Confidence            78999999 7999999999996545778899999999999999999997763   222222233222  33433321   


Q ss_pred             cCCCceEEEEEeCCCCCh-hhHHHHHhhhhcCceeeeecccccccchhh--HHHHHHHHHHhhcCCeeeeeccccccCCC
Q 013458           77 QGKQLQMLIIILPDVSGS-YGRIKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIP  153 (442)
Q Consensus        77 ~~~~~~~vlvilp~~~~~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~~--~~~ni~~kinaKlGG~n~~l~~~~~~~~p  153 (442)
                        .++||||||+|+++.+ |+.||++++.+.||+||||..+++.+.+++  ++.||++|||+||||+||.|+.+    +|
T Consensus        77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~  150 (437)
T 2yhb_A           77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP  150 (437)
T ss_dssp             --HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CH
T ss_pred             --CCCcEEEEEECCCChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----cc
Confidence              3799999999998777 999999999999999999999999888888  99999999999999999999763    55


Q ss_pred             ccCCCCeEEEEEeecCCC---CC--CCCCCeEEEEEeeeCCCCccceeeEEEecc-CchhhhhhhhhccCCCCCccchhH
Q 013458          154 LVTDRPTIIFGADVTHPQ---PG--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGG  227 (442)
Q Consensus       154 ~~~~~~tmiiGidv~h~~---~~--~~~~~si~avv~S~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~p~~~~~~~~  227 (442)
                      ++.+.+|||||+||+|++   ++  ....||++|+|||+| ++.++|.+.++.|. +++|++++|             ++
T Consensus       151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~  216 (437)
T 2yhb_A          151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD  216 (437)
T ss_dssp             HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred             ccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HH
Confidence            565689999999999998   66  346799999999999 99999999999999 999999998             99


Q ss_pred             HHHHHHHHHHH---hcCCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeeccccccccCCC
Q 013458          228 MIRELLIAFRR---STNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADH  303 (442)
Q Consensus       228 ~~~~~L~~f~~---~~g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~I~v~K~~~~Rff~~~~  303 (442)
                      |+.++|+.|++   .++.+|+||||||||||||||.+|+++|+++|++||.++..+| +|+||||+|+||||+|||+.+.
T Consensus       217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~  296 (437)
T 2yhb_A          217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDP  296 (437)
T ss_dssp             HHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred             HHHHHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCc
Confidence            99999999999   8899999999999999999999999999999999999998777 8999999999999999999775


Q ss_pred             CCCCCCCCCCCCCCeeeeccccccCCcCcEEEeeeCCCcccccceeeEEEecCC------CCCHHHHHHHHHHhhhccCc
Q 013458          304 NRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN------RFSADDFQVLTNNLCYTYAR  377 (442)
Q Consensus       304 ~~~~~~~~~~N~~~GTvvd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~------~~~~d~lq~lt~~Lc~~~~~  377 (442)
                      .+.  .++.+|||||||||++||+|..+||||+||.++|||+||+||+||+||+      ++++|+||+|||+|||+|+|
T Consensus       297 ~~~--~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r  374 (437)
T 2yhb_A          297 KHI--HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR  374 (437)
T ss_dssp             ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC---
T ss_pred             ccc--ccccCCCCCceEecccccCCCCceEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhcc
Confidence            421  1267899999999999999999999999999999999999999999998      89999999999999999999


Q ss_pred             CCCCcccccchHHHHHHHHHHhhhhccccCC--CCCCCCCCCCccccccCCCCccccccCCCCceeC
Q 013458          378 CTRSVSIVPPAYYAHLAAFRARYYIEDETSA--GGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC  442 (442)
Q Consensus       378 ~~~~islPapl~yA~~~a~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~  442 (442)
                      |+++||||+|+||||++|+|||+|+.+..++  .+|++++.. .. +  ......+|++++++||||
T Consensus       375 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~l~~~mfyl  437 (437)
T 2yhb_A          375 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD-FA-R--WGNSGAVHPNLRNSMYYI  437 (437)
T ss_dssp             -------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHH-HH-H--HHHHTSCCGGGTTSCTTC
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHHHhhhhccCCCCCCccCCCC-cc-c--cccccccCHhhcCCceeC
Confidence            9999999999999999999999999864322  222211111 11 1  122467999999999997
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A Back     alignment and structure
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima} Back     alignment and structure
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 1e-109
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-74
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 3e-70
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  325 bits (834), Expect = e-109
 Identities = 60/406 (14%), Positives = 131/406 (32%), Gaps = 70/406 (17%)

Query: 10  GRVEVWTCVNFSTRLNRDVPFQ---FCQGLVDMCNSKGMVFNPRPVIPISSSNPNQIEKA 66
            + +V +    S  + + + ++   F + L++   +KG+    +    I +    + ++ 
Sbjct: 33  VKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEK 92

Query: 67  LVDVHNRTAQQGKQLQMLIIILPDVSGS--------YGRIKRVCETELGIVSQCCQPRQA 118
           L+ V N+     K + ++I+ L +            Y  +KR    +  I SQ    R  
Sbjct: 93  LIPVINKI----KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTL 147

Query: 119 SRLN-MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSS 177
              N      NVA ++  K G     L +        +  +     G D++       + 
Sbjct: 148 KNENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTV 199

Query: 178 PSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFR 237
            ++A         E+ +Y  L S  A  E++ +                  I ++     
Sbjct: 200 NAVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLE 242

Query: 238 RSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTR 297
           +    K  +I+ +RDG            E+ A ++      E Y   +  + + KR++ R
Sbjct: 243 KLGFKKGSKIVVHRDGRLYR-------DEVAAFKKYG----ELYGYSLELLEIIKRNNPR 291

Query: 298 LFPADHNRRDLTDRSGNILPGTVFDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDEN 357
            F            +   + G  +        +       +   +GT +P     +Y E 
Sbjct: 292 FFS-----------NEKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL 336

Query: 358 RFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE 403
               +       +L        + + +    +Y+          IE
Sbjct: 337 --PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 380
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=7.1e-64  Score=505.76  Aligned_cols=334  Identities=16%  Similarity=0.183  Sum_probs=264.0

Q ss_pred             cCeEEEEEec-CCCCCChhHHHHHHHHHHHhhcCcccCCCC-eeccCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEeC
Q 013458           12 VEVWTCVNFS-TRLNRDVPFQFCQGLVDMCNSKGMVFNPRP-VIPISSSNPNQIEKALVDVHNRTAQQGKQLQMLIIILP   89 (442)
Q Consensus        12 l~~W~iv~~~-~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vlvilp   89 (442)
                      +-.|.+|.+. .+..+..+++|++.|.+.|+..||++...+ .+.+.+. ..+.+..|.+..++.    .++++++||+|
T Consensus        37 ~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~l~~vi~~  111 (392)
T d1yvua2          37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQT-REEAKEKLIPVINKI----KDVDLVIVFLE  111 (392)
T ss_dssp             EEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSS-TTHHHHHHHHHHTTT----SSCSEEEEEEC
T ss_pred             cccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCC-ccchHHHHHHHHhhc----cCCCEEEEEEc
Confidence            4455666432 123566789999999999999999997543 2323333 344455666665543    57899999998


Q ss_pred             CCCC-------h-hhHHHHHhhhhcCceeeeecccccccchh-hHHHHHHHHHHhhcCCeeeeeccccccCCCccCCCCe
Q 013458           90 DVSG-------S-YGRIKRVCETELGIVSQCCQPRQASRLNM-QYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPT  160 (442)
Q Consensus        90 ~~~~-------~-Y~~iK~~~~~~~gI~TQ~i~~~t~~k~~~-~~~~ni~~kinaKlGG~n~~l~~~~~~~~p~~~~~~t  160 (442)
                      +..+       + |+.||++| .+.|||||||..+++.+.+. ++++||++|||+||||+||.|.+.     |   ..+|
T Consensus       112 ~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~~~t  182 (392)
T d1yvua2         112 EYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---GKVD  182 (392)
T ss_dssp             ----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---TCCS
T ss_pred             CCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC-----C---CCCe
Confidence            7654       4 99999987 78999999999999976664 467899999999999999998642     2   2679


Q ss_pred             EEEEEeecCCCCCCCCCCeEEEEEeeeCCCCccceeeEEEeccCchhhhhhhhhccCCCCCccchhHHHHHHHHHHHHhc
Q 013458          161 IIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRST  240 (442)
Q Consensus       161 miiGidv~h~~~~~~~~~si~avv~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~p~~~~~~~~~~~~~L~~f~~~~  240 (442)
                      ||||+||+|++++.. .++++|++.+.|......++.....|..++|++                .+++.++|+.|++.+
T Consensus       183 miIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~~~  245 (392)
T d1yvua2         183 AFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEKLG  245 (392)
T ss_dssp             EEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHHTT
T ss_pred             EEEEEEEEecCCCCC-cccEEEEEEEEcCCCCEEEEEEEecCCccHHHH----------------HHHHHHHHHHHHHhc
Confidence            999999999876543 445556555555122334444556677777665                667889999999999


Q ss_pred             CCCCceEEEEecCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCeee
Q 013458          241 NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTV  320 (442)
Q Consensus       241 g~~P~~IIiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~I~v~K~~~~Rff~~~~~~~~~~~~~~N~~~GTv  320 (442)
                      |.+|++|||||||+..       ++|+++|++||.++    +|+|++|+|+||||+|||+.+           |+++||+
T Consensus       246 ~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~~-----------~~~~Gt~  303 (392)
T d1yvua2         246 FKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE-----------KFIKGYF  303 (392)
T ss_dssp             CCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC-----------SCCTTEE
T ss_pred             CCCCceEEEEeCCCCc-------HHHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCCC-----------CCCCCCE
Confidence            9999999999999865       46999999999876    689999999999999999753           4567888


Q ss_pred             eccccccCCcCcEEEeeeCCCcccccceeeEEEecCCCCCHHHHHHHHHHhhhccCcCCCCcccccchHHHHHHHHHHhh
Q 013458          321 FDTHICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADDFQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARY  400 (442)
Q Consensus       321 vd~~i~~~~~~eFyL~s~~~~~GTarP~~Y~vl~d~~~~~~d~lq~lt~~Lc~~~~~~~~~islPapl~yA~~~a~r~~~  400 (442)
                      ++    .+....||++||.+.|||++|+||+|++|++  +.|+||++||.|||+|++|++++|+|+|+||||++|+|+|.
T Consensus       304 v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~  377 (392)
T d1yvua2         304 YK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLR  377 (392)
T ss_dssp             EE----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHT
T ss_pred             Ee----CCCCeEEEEEcCCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhhccCcCCCCeeCHHHHHHHHHHHHHhh
Confidence            75    3567789999999999999999999999985  57999999999999999999999999999999999999999


Q ss_pred             hhcc
Q 013458          401 YIED  404 (442)
Q Consensus       401 ~~~~  404 (442)
                      ++++
T Consensus       378 ~~~p  381 (392)
T d1yvua2         378 GIEP  381 (392)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            8874
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure