Citrus Sinensis ID: 013466
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | 2.2.26 [Sep-21-2011] | |||||||
| O48902 | 437 | Malate dehydrogenase [NAD | N/A | no | 0.968 | 0.979 | 0.829 | 0.0 | |
| P21528 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.947 | 0.950 | 0.841 | 0.0 | |
| Q05145 | 441 | Malate dehydrogenase [NAD | N/A | no | 0.977 | 0.979 | 0.791 | 0.0 | |
| P46489 | 453 | Malate dehydrogenase [NAD | N/A | no | 0.873 | 0.852 | 0.826 | 0.0 | |
| P17606 | 429 | Malate dehydrogenase [NAD | N/A | no | 0.882 | 0.909 | 0.821 | 0.0 | |
| P37229 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.893 | 0.914 | 0.808 | 0.0 | |
| P15719 | 432 | Malate dehydrogenase [NAD | N/A | no | 0.916 | 0.937 | 0.790 | 0.0 | |
| P52426 | 435 | Malate dehydrogenase [NAD | N/A | no | 0.963 | 0.979 | 0.753 | 0.0 | |
| Q6MAA3 | 330 | Malate dehydrogenase OS=P | yes | no | 0.730 | 0.978 | 0.533 | 5e-95 | |
| B2UKY5 | 329 | Malate dehydrogenase OS=A | yes | no | 0.735 | 0.987 | 0.516 | 3e-89 |
| >sp|O48902|MDHP_MEDSA Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/435 (82%), Positives = 390/435 (89%), Gaps = 7/435 (1%)
Query: 10 SSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSV--NQVQAPVAVEQDDP 67
++ ++T SSSQLS S L P+ ++ ISCSV NQVQAP AV+ DP
Sbjct: 8 NTCSKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQAP-AVQTQDP 66
Query: 68 KSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP 127
KSK DCYGVFCLTYDLKAEEETKSWKK++ IAVSGAAGMI+NHLLFKLA+GEV GP+QP
Sbjct: 67 KSKP-DCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQP 125
Query: 128 IALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187
IALKLLGSERSLQALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG
Sbjct: 126 IALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPG 185
Query: 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
MERA LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP+IPAKNFHAL
Sbjct: 186 MERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHAL 245
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKDHKWL
Sbjct: 246 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWL 305
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
EE FTE +QK RGG LI+KWGRSSAAST+VSIVDA++SL+ PTPEGDWFS+GVYT GN
Sbjct: 306 EEEFTEKVQK---RGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVYTTGN 362
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGI 427
PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGI
Sbjct: 363 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGI 422
Query: 428 AFCDLPEDTMLPGEM 442
A CDLP DTMLPGEM
Sbjct: 423 AVCDLPGDTMLPGEM 437
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Medicago sativa (taxid: 3879) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 2 |
| >sp|P21528|MDHP_PEA Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2 | Back alignment and function description |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/430 (84%), Positives = 389/430 (90%), Gaps = 11/430 (2%)
Query: 19 SSSQLS-LSSTHLSSLRRR---AFRPIIGPRNPTISCSV--NQVQAPVAVEQDDPKSKTN 72
SSSQLS LS T +L R F P+ ++ ISCSV NQVQ P A QD PK K
Sbjct: 17 SSSQLSFLSRTRTRTLPRHYHSTFAPLHRTQHARISCSVAPNQVQVPAAQTQD-PKGKP- 74
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DCYGVFCLTYDLKAEEETKSWKK++NIAVSGAAGMI+NHLLFKLA+GEV GPDQPIALKL
Sbjct: 75 DCYGVFCLTYDLKAEEETKSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKL 134
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS+QALEGVAMELEDSLFPLLREV I I+PYE+F+DAEWALLIGAKPRGPG+ERA
Sbjct: 135 LGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAA 194
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFAEQGKALNAVASRN KVIVVGNPCNTNALICLKNAP+IPAKNFHALTRLDE
Sbjct: 195 LLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 254
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKE+IKD+KWLEE FT
Sbjct: 255 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDNKWLEEEFT 314
Query: 313 ETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 372
E +QK RGG+LI+KWGRSSAAST+VSIVDA++SL+TPTPEGDWFSSGVYTNGNPYGIA
Sbjct: 315 EKVQK---RGGVLIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSSGVYTNGNPYGIA 371
Query: 373 EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDL 432
EDIVFSMPCRSKGDGDYELV DVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDL
Sbjct: 372 EDIVFSMPCRSKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDL 431
Query: 433 PEDTMLPGEM 442
P DTMLPGEM
Sbjct: 432 PGDTMLPGEM 441
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q05145|MDHP_MESCR Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/446 (79%), Positives = 383/446 (85%), Gaps = 14/446 (3%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPT----ISCSV--NQVQ 57
VA+LSPS T+L + Q SS R F + PR + I CSV NQVQ
Sbjct: 3 VAELSPSY---KTQLKTCQQLSSSLSTRLSDHRKFSLRLLPRPVSVRGGIRCSVAPNQVQ 59
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
APVAV + K +CYG+FCLTYDLKAEEETK+WKKM+ IAVSGAAGMI+NHLLFKLA
Sbjct: 60 APVAVPAEGQTGKP-ECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLA 118
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+GEV GPDQPIALKLLGSERS ALEGVAMELEDSL+PLLR V IGI+PY++F+DAEWAL
Sbjct: 119 SGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWAL 178
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP
Sbjct: 179 LIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 238
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA+I+GLPV
Sbjct: 239 NIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGLPV 298
Query: 298 KEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDW 357
K +IKDHKWLEE FT IQK RGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDW
Sbjct: 299 KTVIKDHKWLEEEFTVMIQK---RGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDW 355
Query: 358 FSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
FSS VYTNGNPYGIAED+VFSMPCRSKGDGDYELVKDV+FDDYLR+RI K+E+ELLAEK+
Sbjct: 356 FSSAVYTNGNPYGIAEDLVFSMPCRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEKR 415
Query: 418 CVAHLTGEGIAFCDLPE-DTMLPGEM 442
C AHLTGEG+A CDLP DTMLPGEM
Sbjct: 416 CTAHLTGEGVAVCDLPAGDTMLPGEM 441
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P46489|MDHP_FLABI Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1 | Back alignment and function description |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/398 (82%), Positives = 363/398 (91%), Gaps = 12/398 (3%)
Query: 48 TISCSV---NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
+I CSV +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGA
Sbjct: 65 SIRCSVTSSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGA 118
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI
Sbjct: 119 AGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGI 178
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+F+DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNP
Sbjct: 179 DPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNP 238
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 239 CNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 298
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
PDFLNA+I+G+PV E+I+D KWLE+ FT +Q RGG+LIKKWGRSSAASTAVSIVDA
Sbjct: 299 PDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQT---RGGVLIKKWGRSSAASTAVSIVDA 355
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404
++SLVTPTPEGDWFS+GVYTNGNPYGIAEDIVFSMPCRSKGDGDYE VKDVIFDDYL K+
Sbjct: 356 IRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKK 415
Query: 405 IAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442
I K+E ELLAEKKCVAHLTGEGIA CDLPEDTMLPGEM
Sbjct: 416 IKKSEDELLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 453
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Flaveria bidentis (taxid: 4224) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P17606|MDHP1_SORBI Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/398 (82%), Positives = 357/398 (89%), Gaps = 8/398 (2%)
Query: 48 TISCSVN---QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
T+ CSV+ QVQ VA + K DC+GVFC TYDLKAE++TKSWKK+VNIAVSGA
Sbjct: 37 TVRCSVDAAKQVQDGVATAEAPATRK--DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGA 94
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI
Sbjct: 95 AGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGI 154
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+PYE+FED +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNP
Sbjct: 155 DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 214
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQV
Sbjct: 215 CNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 274
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
PDFLNA+I+G PVKE+IKD KWLEE FT T+QK RGG LI+KWGRSSAASTAVSI DA
Sbjct: 275 PDFLNAKIDGRPVKEVIKDTKWLEEEFTITVQK---RGGALIQKWGRSSAASTAVSIADA 331
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404
+KSLVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL DV DD+L +R
Sbjct: 332 IKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWER 391
Query: 405 IAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442
I K+E ELLAEKKCVAHLTGEG A+CD+PEDTMLPGE+
Sbjct: 392 IKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPGEV 429
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P37229|MDHP2_SORBI Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/402 (80%), Positives = 355/402 (88%), Gaps = 7/402 (1%)
Query: 44 PRNPTISCSV----NQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNI 99
PR T+ CSV QVQ VA + N+C+GVFC YDLKAE++TKSWKK+V I
Sbjct: 33 PRLATVRCSVVDAAKQVQDGVATAVGGGAASGNECFGVFCNIYDLKAEDKTKSWKKLVTI 92
Query: 100 AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLRE 159
AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGV MELEDSL+PLLRE
Sbjct: 93 AVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLRE 152
Query: 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219
V IGI PYE+F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVASRNVKV+
Sbjct: 153 VSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVL 212
Query: 220 VVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279
VVGNPCNTNALICLKN P+IPAKNFHALTRLDENRAKCQ+ALKAGVFYDKVSN+TIWGNH
Sbjct: 213 VVGNPCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNH 272
Query: 280 STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAV 339
STTQVPDFLNA+I+G PVKEII+D KWLEE FT T+QK RGG+LI+KWGRSSAASTAV
Sbjct: 273 STTQVPDFLNAKIDGRPVKEIIQDTKWLEEEFTMTVQK---RGGVLIQKWGRSSAASTAV 329
Query: 340 SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 399
SIVDA+KSLVTPTPEG+WFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL DV DD
Sbjct: 330 SIVDAIKSLVTPTPEGEWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSMDD 389
Query: 400 YLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGE 441
+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE
Sbjct: 390 FLWERIKKSEAELLAEKKCVAHLTGEGDAFCDLPEDTMLPGE 431
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Sorghum bicolor (taxid: 4558) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P15719|MDHP_MAIZE Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1 | Back alignment and function description |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/416 (79%), Positives = 368/416 (88%), Gaps = 11/416 (2%)
Query: 34 RRRAFRPIIGPRNP--TISCSVN---QVQAPVA--VEQDDPKSKTNDCYGVFCLTYDLKA 86
R R+ +P R P T+ CSV+ Q Q VA V + P S+ +C+GVFC TYDLKA
Sbjct: 21 RCRSAQPRRPRRAPLATVRCSVDATKQAQDGVATAVATEAPASR-KECFGVFCTTYDLKA 79
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
E++TKSW+K+VN+AVSGAAGMI+NHLLFKLA+GEV G DQPIALKLLGSERS QALEGVA
Sbjct: 80 EDKTKSWRKLVNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 139
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
MELEDSL+PLLREV IGI+PY +F+D +WALLIGAKPRGPGMERA LLDINGQIFA+QGK
Sbjct: 140 MELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGK 199
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVF 266
ALNAVASRN +V+VVGNPCNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVF
Sbjct: 200 ALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVF 259
Query: 267 YDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326
YDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IKD KWLEE FT T+QK RGG+LI
Sbjct: 260 YDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTLTVQK---RGGVLI 316
Query: 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGD 386
+KWGRSSAASTAVSIVDA++SLVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGD
Sbjct: 317 QKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGD 376
Query: 387 GDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442
GDYEL DV+ DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE+
Sbjct: 377 GDYELASDVLMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAFCDLPEDTMLPGEV 432
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|P52426|MDHP_SPIOL Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/446 (75%), Positives = 372/446 (83%), Gaps = 20/446 (4%)
Query: 4 VAQLSPSSYTETTRLSSSQLSLSSTHLSSLRRRAFRPIIG----PRNPTISCSV--NQVQ 57
VA+LSP T+ + HLS L ++G R I CS+ NQVQ
Sbjct: 3 VAELSPCYQTQIVK---------PPHLSWLSNNHKLNLLGLPKASRITEICCSLAPNQVQ 53
Query: 58 APVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLA 117
PVAV +S +CYGVFC TYDLK EEET+SWKKM+ IA+SGAAG I+NHLLFKLA
Sbjct: 54 TPVAVPTGA-QSIKPECYGVFCWTYDLKKEEETRSWKKMITIAISGAAGTISNHLLFKLA 112
Query: 118 AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177
+G V GPDQPIALKLLGSE+S ALEGVAMELEDSL+PLLREV IGI+PYE+FEDAEWAL
Sbjct: 113 SGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWAL 172
Query: 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237
LIGAKPRGPGMERA LLDING+I+AEQGKALNAVAS NVKVIVVGNPCNTNALICLKN P
Sbjct: 173 LIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPP 232
Query: 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
+IPAKNFH+LTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDF+NA+I G+PV
Sbjct: 233 NIPAKNFHSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFVNAQIGGVPV 292
Query: 298 KEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDW 357
KE+IK KWLEE FTE KVR RGG+LI+KWGRSSAASTAVSIVDA+ L+TPTP GDW
Sbjct: 293 KEVIKAQKWLEEEFTE---KVRKRGGVLIQKWGRSSAASTAVSIVDAINPLITPTPPGDW 349
Query: 358 FSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
F SGVYTNGNPYGIAED+++SMPCRSKGDGDYELVKDVIFDDYLRKRI +E+ELLAEK+
Sbjct: 350 FPSGVYTNGNPYGIAEDLIYSMPCRSKGDGDYELVKDVIFDDYLRKRIKTSEEELLAEKR 409
Query: 418 CVAHLTGEGIAFCDLPE-DTMLPGEM 442
C AHLTGEGIA CDLP DTMLPGEM
Sbjct: 410 CTAHLTGEGIAVCDLPAGDTMLPGEM 435
|
The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 2 |
| >sp|Q6MAA3|MDH_PARUW Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 174/326 (53%), Positives = 235/326 (72%), Gaps = 3/326 (0%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ IA+SG AG IA LLF+LA+GE+ GP+Q I L++L +L ALEGV ME+ED FPL
Sbjct: 5 IKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPL 64
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L +KI +PY+ FED ++ALLIGAK RGPGMER LL N +IF QG+ALNAVA +
Sbjct: 65 LSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSA 124
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
K+ VVGNPCNTN LI L NAPS+ +NF+A+TRLD+NRA L+ K+ V VS +TIW
Sbjct: 125 KIFVVGNPCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQKSQVSTKDVSCVTIW 184
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAAS 336
GNHS TQVPDF+NA+I+ PV+ II D +WLE+ F E++QK RG +I+ G+SSAAS
Sbjct: 185 GNHSATQVPDFVNAKISQKPVETIIPDRQWLEKDFIESVQK---RGAAIIQARGKSSAAS 241
Query: 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 396
A +++DAM+ + PTP G WFS+ + ++GNPYGI E ++FS PCR K +G+ +V +
Sbjct: 242 AASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLK 301
Query: 397 FDDYLRKRIAKTEQELLAEKKCVAHL 422
+D +L ++I TEQEL E++ V+ +
Sbjct: 302 WDAFLEEKIKLTEQELKEEREMVSSI 327
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B2UKY5|MDH_AKKM8 Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/329 (51%), Positives = 228/329 (69%), Gaps = 4/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K + + V+GAAG IA LLF++A+G +LGPDQPI L+LL ++ ALEGV MEL D+
Sbjct: 2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPL+ E+ +P E F A W LL+G+ PR GMER LLDING++F QG+A+ A+
Sbjct: 62 FPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++V+V+VVGNPCNTNALI + NA +P+ F A+TRLDENRAK QLA KAGV +V+NM
Sbjct: 122 KDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
IWGNHS+TQ PDF NARI G PV E+IKD +WL+ F T+Q+ RG +IK G SS
Sbjct: 182 AIWGNHSSTQYPDFTNARIGGKPVTEVIKDTEWLKGDFITTVQQ---RGAAIIKARGASS 238
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + VD ++SL T TPEGDW+S V ++G+ YGI + ++ S P R+ DG +E+V+
Sbjct: 239 AASAASAAVDTVRSLATQTPEGDWYSVAVCSDGS-YGIEKGLICSFPVRTTKDGGWEIVQ 297
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ D + R++I T EL E+ V+ L
Sbjct: 298 GLPVDAFSREKIDATVNELKEERDAVSSL 326
|
Catalyzes the reversible oxidation of malate to oxaloacetate. Akkermansia muciniphila (strain ATCC BAA-835) (taxid: 349741) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| TAIR|locus:2161188 | 443 | AT5G58330 [Arabidopsis thalian | 0.891 | 0.889 | 0.847 | 8.7e-182 | |
| UNIPROTKB|P0A5J6 | 329 | mdh "Malate dehydrogenase" [My | 0.726 | 0.975 | 0.493 | 6.2e-78 | |
| TIGR_CMR|CBU_1241 | 328 | CBU_1241 "malate dehydrogenase | 0.730 | 0.984 | 0.481 | 3.5e-75 | |
| DICTYBASE|DDB_G0280255 | 333 | mdhC "malate dehydrogenase" [D | 0.737 | 0.978 | 0.444 | 7.2e-68 | |
| ZFIN|ZDB-GENE-040204-1 | 333 | mdh1a "malate dehydrogenase 1a | 0.712 | 0.945 | 0.452 | 1.2e-67 | |
| ZFIN|ZDB-GENE-030131-7655 | 333 | mdh1b "malate dehydrogenase 1b | 0.730 | 0.969 | 0.444 | 4e-67 | |
| UNIPROTKB|Q5ZME2 | 334 | MDH1 "Malate dehydrogenase, cy | 0.714 | 0.946 | 0.463 | 8.2e-67 | |
| DICTYBASE|DDB_G0292600 | 348 | mdhB "malate dehydrogenase" [D | 0.733 | 0.931 | 0.433 | 4.5e-66 | |
| UNIPROTKB|P11708 | 334 | MDH1 "Malate dehydrogenase, cy | 0.712 | 0.943 | 0.449 | 9.4e-66 | |
| UNIPROTKB|Q3T145 | 334 | MDH1 "Malate dehydrogenase, cy | 0.714 | 0.946 | 0.453 | 1.5e-65 |
| TAIR|locus:2161188 AT5G58330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1764 (626.0 bits), Expect = 8.7e-182, P = 8.7e-182
Identities = 338/399 (84%), Positives = 368/399 (92%)
Query: 46 NPTISCSVNQ-VQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGA 104
N ISCSV+Q QAPVAV+++ +CYGVFCLTYDLKAEEET+SWKK++NIAVSGA
Sbjct: 48 NSKISCSVSQNSQAPVAVQENGLVKTKKECYGVFCLTYDLKAEEETRSWKKLINIAVSGA 107
Query: 105 AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI 164
AGMI+NHLLFKLA+GEV GPDQPIALKLLGSERS+QALEGVAMELEDSLFPLLREV IG
Sbjct: 108 AGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVDIGT 167
Query: 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224
+P E+F+D EWA+LIGAKPRGPGMERA LLDINGQIFAEQGKALN AS NVKV+VVGNP
Sbjct: 168 DPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAASPNVKVLVVGNP 227
Query: 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 284
CNTNALICLKNAP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV
Sbjct: 228 CNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV 287
Query: 285 PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDA 344
PDFLNARINGLPVKE+I DHKWLEEGFTE++QK RGGLLI+KWGRSSAASTAVSIVDA
Sbjct: 288 PDFLNARINGLPVKEVITDHKWLEEGFTESVQK---RGGLLIQKWGRSSAASTAVSIVDA 344
Query: 345 MKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404
+KSLVTPTPEGDWFS+GVYT+GNPYGI E +VFSMPCRSKGDGDYELVKDV DDYLR+R
Sbjct: 345 IKSLVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQR 404
Query: 405 IAKTEQELLAEKKCVAHLTGEGIAFCDL-PEDTMLPGEM 442
IAK+E ELLAEK+CVAHLTGEGIA+CDL P DTMLPGE+
Sbjct: 405 IAKSEAELLAEKRCVAHLTGEGIAYCDLGPVDTMLPGEV 443
|
|
| UNIPROTKB|P0A5J6 mdh "Malate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 161/326 (49%), Positives = 213/326 (65%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +AV+GAAG I LLF+LA+G +LGPD+PI L+LL E +LQALEGV MEL+D FPL
Sbjct: 6 LKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPL 65
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L V+IG +P ++F+ ALL+GA+PRG GMER+ LL+ NG IF QGKALNAVA+ +V
Sbjct: 66 LSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDV 125
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+V V GNP NTNALI + NAP IP + F ALTRLD NRA QLA K G + MTIW
Sbjct: 126 RVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIW 185
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAAS 336
GNHS TQ PD +A + G E++ D W+E+ F T+ K RG +I G SSAAS
Sbjct: 186 GNHSATQYPDLFHAEVAGKNAAEVVNDQAWIEDEFIPTVAK---RGAAIIDARGASSAAS 242
Query: 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 396
A + +DA + + TP DW S V ++G+ YG+ E ++ S P +KG G++ +V +
Sbjct: 243 AASATIDAARDWLLGTPADDWVSMAVVSDGS-YGVPEGLISSFPVTTKG-GNWTIVSGLE 300
Query: 397 FDDYLRKRIAKTEQELLAEKKCVAHL 422
D++ R RI K+ EL E+ V L
Sbjct: 301 IDEFSRGRIDKSTAELADERSAVTEL 326
|
|
| TIGR_CMR|CBU_1241 CBU_1241 "malate dehydrogenase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 158/328 (48%), Positives = 214/328 (65%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF+LA+G+ G D + L LL E +L AL+GV MELED F
Sbjct: 3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAF 62
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLLR + + +P F D WALL+GA PR GMER LL+ NG IFA QGKA+N A+
Sbjct: 63 PLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAAS 122
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+V++ VVGNPCNTN LI + NAP IP F+A+TRLD+NRA QLALKAGV V NM
Sbjct: 123 DVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMI 182
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
IWGNHS+TQ PDF +A I+G P E+I+D WL F IQ+ RG +IK G SSA
Sbjct: 183 IWGNHSSTQYPDFYHATIDGKPATEVIRDKNWLLNDFISVIQQ---RGAAVIKARGASSA 239
Query: 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 394
AS A + +D++ SL+ TP D +S + G YG+ E ++FS PCR++ +G ++++
Sbjct: 240 ASAANAALDSVWSLINTTPADDNYSVALCAQGQ-YGVDEGLIFSFPCRTE-NGVVSVIEE 297
Query: 395 VIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ ++++ +T EL E+ V L
Sbjct: 298 IEHNEFGQQKLKETLDELREERDAVEAL 325
|
|
| DICTYBASE|DDB_G0280255 mdhC "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 149/335 (44%), Positives = 205/335 (61%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+++N+ ++GAAG IA L+F + G++ G DQ I L LL + + +L+G+ ME++D +
Sbjct: 4 EVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAY 63
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PL+ + I + E F +A+L+GA PR GMERA LL N IF QGKAL A++
Sbjct: 64 PLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANK 123
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
NVKV+VVGNP NTNALI +A IP +NF LTRLD+NRAK Q+ALKAGV V N+
Sbjct: 124 NVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVI 183
Query: 275 IWGNHSTTQVPDF----LNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWG 330
IWGNHS+TQ PD+ +N P+ IKD KWL+ F T+QK RG +I
Sbjct: 184 IWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDEKWLQGEFISTVQK---RGAAVIAARK 240
Query: 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYE 390
SSAAS A +I D M V T EG++ S GVY++G+ YG+ E ++FS P + +G Y
Sbjct: 241 LSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGS-YGVPEGLIFSFPVKC-ANGKYT 298
Query: 391 LVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE 425
+V+ + DD + I T +EL+AEK E
Sbjct: 299 IVQGLQMDDLSKNLINLTTEELVAEKTTALQFLSE 333
|
|
| ZFIN|ZDB-GENE-040204-1 mdh1a "malate dehydrogenase 1a, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 147/325 (45%), Positives = 206/325 (63%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQPI L LL L L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDITPMLPVLDGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N IF QG+AL A +
Sbjct: 65 LREV-IPTDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGEALEKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA+ Q+A++ GV D V N+TI
Sbjct: 124 VKVLVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRARSQVAMRVGVPSDSVKNVTI 183
Query: 276 WGNHSTTQVPDFLNARI--NGLPVK--EIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
WGNHS+TQ PD +A + NG + + + D WL+ F T+Q+ RG +IK
Sbjct: 184 WGNHSSTQYPDVHHAIVTRNGKEIAAFDAVNDESWLKGDFISTVQQ---RGAAVIKARKL 240
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSA S A +I D M+ + TP+G+W S G+Y++GN YG+ +D+++S P + K +++
Sbjct: 241 SSAMSAAKAICDHMRDIWFGTPDGEWVSMGIYSSGNSYGVPDDLMYSFPVKIKNKS-WKV 299
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEK 416
V + +D+ R ++ T EL+ E+
Sbjct: 300 VDGLSINDFSRGKMDATAAELVEER 324
|
|
| ZFIN|ZDB-GENE-030131-7655 mdh1b "malate dehydrogenase 1b, NAD (soluble)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 148/333 (44%), Positives = 206/333 (61%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G DQP+ L LL L LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLVLLLLDITPMLPVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + ++ F+D + A+L+G+ PR GMER LL N IF QG+AL+ A +
Sbjct: 65 LREV-IPTDKEDVAFKDLDAAILVGSMPRREGMERKDLLKANVAIFKSQGEALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRA Q+AL+ G+ + V N+ I
Sbjct: 124 VKVLVVGNPANTNCLIAAKSAPSIPKENFSCLTRLDHNRASSQVALRCGIAPNNVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI----IKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
WGNHS+TQ PD + ++N E +KD WL+ F T+Q+ RG +IK
Sbjct: 184 WGNHSSTQYPDVHHCKVNVQGKDETAFDAVKDDAWLKGEFISTVQQ---RGAAVIKARKL 240
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSA S A +I D M+ + T TPEG++ S GVY+ GN YG+ ED+++S P K D ++++
Sbjct: 241 SSAMSAAKAICDHMRDIWTGTPEGEFISMGVYSTGNSYGVPEDLIYSFPISIK-DKNWKI 299
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 424
V + +D+ + ++ T EL+ E+ G
Sbjct: 300 VDGLPINDFSKAKMEATAAELVEERDTALSFLG 332
|
|
| UNIPROTKB|Q5ZME2 MDH1 "Malate dehydrogenase, cytoplasmic" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 151/326 (46%), Positives = 209/326 (64%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ +A G+V G +QP+ L LL + LEGV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
LREV I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A +
Sbjct: 65 LREV-IPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKT 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKV+VVGNP NTN LI K+APSIP +NF LTRLD NRAK Q+ALK GV + V N+ I
Sbjct: 124 VKVVVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTSNDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
WGNHS+TQ PD +A++N G + V E IKD WL+ F T+Q+ RG +IK
Sbjct: 184 WGNHSSTQYPDVNHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQ---RGAAVIKARKL 240
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSA S A +I D ++ + TP G++ S GV ++GN YG+ ED+++S P K D ++
Sbjct: 241 SSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIK-DKTWKF 299
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKK 417
V+ + +D+ R+++ T +EL EK+
Sbjct: 300 VEGLPINDFSREKMDLTAKELTEEKE 325
|
|
| DICTYBASE|DDB_G0292600 mdhB "malate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 143/330 (43%), Positives = 200/330 (60%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +A++GA+G I LLF++A+G++LG DQPI L+ L ++ +L+GV+MEL+D
Sbjct: 22 KAPVRVAITGASGQIGYQLLFRIASGDMLGKDQPIILQCLELPGAMNSLKGVSMELDDCA 81
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL+ + P E F A++ALL+GA+PR GMER LL N +IF+ QGKAL+ A+
Sbjct: 82 FPLLKGIVQSDKPEEAFAGADYALLVGARPRSKGMERGDLLKANAEIFSVQGKALDKSAN 141
Query: 214 RN-VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272
R+ ++V+VVGNP NTNALI +NAP+I K F A+TRLD NR QLA K G +
Sbjct: 142 RDTLRVLVVGNPANTNALIAARNAPNIDPKRFSAMTRLDHNRGLAQLADKTGSAVTDIEK 201
Query: 273 MTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
IWGNHS TQ PD + G + + I D KW+++ F T+Q+ RG +I G S
Sbjct: 202 FCIWGNHSATQYPDINFGTVKGKSLVDTINDQKWVKDNFIPTVQQ---RGAAIIAARGLS 258
Query: 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 392
SAAS A + +D M+ T G W S +Y+ G YG + + FS P G YE+V
Sbjct: 259 SAASAASAAIDHMRDWTYGT-NGQWTSMAIYSEGE-YGADKGLYFSFPVIVDNKGKYEIV 316
Query: 393 KDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
K + D + ++R T +ELL+E V L
Sbjct: 317 KGLKLDQFSQERFDATRKELLSEMDGVKEL 346
|
|
| UNIPROTKB|P11708 MDH1 "Malate dehydrogenase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 147/327 (44%), Positives = 208/327 (63%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARINGLPVKEI-----IKDHKWLEEGFTETIQKVRLRGGLLIKKWG 330
WGNHS+TQ PD +A++ L KE+ +KD WL+ F T+Q+ RG +IK
Sbjct: 184 WGNHSSTQYPDVNHAKVK-LQAKEVGVYEAVKDDSWLKGEFITTVQQ---RGAAVIKARK 239
Query: 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYE 390
SSA S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P K D ++
Sbjct: 240 LSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIK-DKTWK 298
Query: 391 LVKDVIFDDYLRKRIAKTEQELLAEKK 417
+V+ + +D+ R+++ T +EL EK+
Sbjct: 299 IVEGLPINDFSREKMDLTAKELAEEKE 325
|
|
| UNIPROTKB|Q3T145 MDH1 "Malate dehydrogenase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 148/326 (45%), Positives = 208/326 (63%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARIN--G--LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
WGNHS+TQ PD +A++ G + V E +KD WL+ F T+Q+ RG +IK
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQ---RGAAVIKARKL 240
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSA S A +I D ++ + TPEG++ S G+ ++GN YGI +D+++S P K D +++
Sbjct: 241 SSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIK-DKTWKV 299
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKK 417
V+ + +D+ R+++ T +EL EK+
Sbjct: 300 VEGLPINDFSREKMDLTAKELAEEKE 325
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O48902 | MDHP_MEDSA | 1, ., 1, ., 1, ., 8, 2 | 0.8298 | 0.9683 | 0.9794 | N/A | no |
| P52426 | MDHP_SPIOL | 1, ., 1, ., 1, ., 8, 2 | 0.7533 | 0.9638 | 0.9793 | N/A | no |
| P46489 | MDHP_FLABI | 1, ., 1, ., 1, ., 8, 2 | 0.8266 | 0.8733 | 0.8520 | N/A | no |
| B2HRH5 | MDH_MYCMM | 1, ., 1, ., 1, ., 3, 7 | 0.5092 | 0.7262 | 0.9756 | yes | no |
| P21528 | MDHP_PEA | 1, ., 1, ., 1, ., 8, 2 | 0.8418 | 0.9479 | 0.9501 | N/A | no |
| P37229 | MDHP2_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8084 | 0.8936 | 0.9143 | N/A | no |
| Q05145 | MDHP_MESCR | 1, ., 1, ., 1, ., 8, 2 | 0.7914 | 0.9773 | 0.9795 | N/A | no |
| B2UKY5 | MDH_AKKM8 | 1, ., 1, ., 1, ., 3, 7 | 0.5167 | 0.7352 | 0.9878 | yes | no |
| Q6MAA3 | MDH_PARUW | 1, ., 1, ., 1, ., 3, 7 | 0.5337 | 0.7307 | 0.9787 | yes | no |
| P15719 | MDHP_MAIZE | 1, ., 1, ., 1, ., 8, 2 | 0.7908 | 0.9162 | 0.9375 | N/A | no |
| P17606 | MDHP1_SORBI | 1, ., 1, ., 1, ., 8, 2 | 0.8216 | 0.8823 | 0.9090 | N/A | no |
| A0PVV1 | MDH_MYCUA | 1, ., 1, ., 1, ., 3, 7 | 0.5092 | 0.7262 | 0.9756 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| PLN00112 | 444 | PLN00112, PLN00112, malate dehydrogenase (NADP); P | 0.0 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 0.0 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 0.0 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 0.0 | |
| PRK05442 | 326 | PRK05442, PRK05442, malate dehydrogenase; Provisio | 1e-174 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 1e-172 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 1e-140 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 1e-107 | |
| PLN00135 | 309 | PLN00135, PLN00135, malate dehydrogenase | 2e-86 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 2e-71 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 7e-69 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 3e-64 | |
| cd05295 | 452 | cd05295, MDH_like, Malate dehydrogenase-like | 7e-60 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 5e-51 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 4e-43 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 7e-15 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 1e-12 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 7e-12 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 9e-11 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 2e-08 | |
| cd05290 | 307 | cd05290, LDH_3, A subgroup of L-lactate dehydrogen | 3e-06 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 5e-06 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 6e-06 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 1e-05 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 3e-05 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 6e-05 | |
| cd05292 | 308 | cd05292, LDH_2, A subgroup of L-lactate dehydrogen | 4e-04 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 4e-04 | |
| PRK00066 | 315 | PRK00066, ldh, L-lactate dehydrogenase; Reviewed | 8e-04 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 0.003 |
| >gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Score = 849 bits (2196), Expect = 0.0
Identities = 363/448 (81%), Positives = 393/448 (87%), Gaps = 11/448 (2%)
Query: 2 AVVAQLSPSSYTET-----TRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV 56
VA+LS T +RL SSQL LS THLS+ RRA P N ISCSVNQ
Sbjct: 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQA 60
Query: 57 -QAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFK 115
QAP AV++ K+K +CYGVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NHLLFK
Sbjct: 61 SQAPAAVQEKGVKTK-KECYGVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFK 119
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
LA+GEV GPDQPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+F+DAEW
Sbjct: 120 LASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
ALLIGAKPRGPGMERA LLDINGQIFAEQGKALN VASRNVKVIVVGNPCNTNALICLKN
Sbjct: 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL 295
AP+IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+INGL
Sbjct: 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGL 299
Query: 296 PVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEG 355
PVKE+I DHKWLEE FT +QK RGG+LIKKWGRSSAASTAVSI DA+KSLVTPTPEG
Sbjct: 300 PVKEVITDHKWLEEEFTPKVQK---RGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEG 356
Query: 356 DWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415
DWFS+GVYT+GNPYGIAE +VFSMPCRSKGDGDYE+VKDV DDYLR+RI K+E ELLAE
Sbjct: 357 DWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKSEAELLAE 416
Query: 416 KKCVAHLTGEGIAFCDL-PEDTMLPGEM 442
K+CVAHLTGEG AFCDL PEDTMLPGEM
Sbjct: 417 KRCVAHLTGEGGAFCDLRPEDTMLPGEM 444
|
Length = 444 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 680 bits (1756), Expect = 0.0
Identities = 306/392 (78%), Positives = 341/392 (86%), Gaps = 8/392 (2%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIA 109
+ QVQA VA + + T CYGVFCL+YDLK E++ TKSWKK VN+AVSGAAGMI+
Sbjct: 1 AAKQVQAGVATAE---AAATKKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMIS 57
Query: 110 NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169
NHLLF LA+GEV G DQPIALKLLGSERS +ALEGVAMELEDSL+PLLREV IGI+PYE+
Sbjct: 58 NHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV 117
Query: 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229
FEDA+WALLIGAKPRGPGMERA LLDINGQIFA+QGKALNAVAS+N KV+VVGNPCNTNA
Sbjct: 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNA 177
Query: 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLN 289
LI +KNAP+IP KNFHALTRLDENRAKCQLALK+G FY VSN+TIWGNHSTTQVPDF+N
Sbjct: 178 LIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVN 237
Query: 290 ARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLV 349
A+I G P KE+IKD KWLEE FT T+QK RGG LIKKWGRSSAASTAVSI DA+KSLV
Sbjct: 238 AKIGGRPAKEVIKDTKWLEEEFTPTVQK---RGGALIKKWGRSSAASTAVSIADAIKSLV 294
Query: 350 TPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTE 409
PTPEGDWFS+GVYT+GNPYGIAE +VFSMPCRSKGDGDYEL DV DD+LR+RI K+E
Sbjct: 295 VPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSE 354
Query: 410 QELLAEKKCVAHLTGEGIAFCDLPEDTMLPGE 441
ELL EK+CVAHL GEG A+C +PEDTMLPGE
Sbjct: 355 DELLKEKECVAHLIGEGNAYCAVPEDTMLPGE 386
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 573 bits (1480), Expect = 0.0
Identities = 195/327 (59%), Positives = 235/327 (71%), Gaps = 5/327 (1%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K V +AV+GAAG I LLF++A+GE+ GPDQP+ L+LL ++L+ALEGVAMELED F
Sbjct: 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF 60
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
PLL E+ I +P F+DA+WALL+GAKPRGPGMERA LL NG+IF QGKALN VASR
Sbjct: 61 PLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASR 120
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
+VKV+VVGNPCNTNALI +KNAP IP NF A+TRLD NRAK QLA KAGV V NM
Sbjct: 121 DVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMV 180
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
IWGNHS TQ PDF NA I G P E+I D WLE+ F T+QK RG +IK G SSA
Sbjct: 181 IWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQK---RGAAIIKARGASSA 237
Query: 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 394
AS A + +D M+ V TPEGDWFS V ++G YGI E ++FS P RSKG G YE+V+
Sbjct: 238 ASAANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGG-YEIVEG 295
Query: 395 VIFDDYLRKRIAKTEQELLAEKKCVAH 421
+ DD+ R++I T ELL E++ V H
Sbjct: 296 LEIDDFAREKIDATLAELLEEREAVKH 322
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 518 bits (1336), Expect = 0.0
Identities = 190/326 (58%), Positives = 235/326 (72%), Gaps = 3/326 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK V +AV+GAAG I LLF++A+GE+ G DQP+ L LL +++ALEGVAMELED
Sbjct: 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA 60
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V +P E F+D + ALL+GA PR PGMERA LL NG+IF EQGKALN VA
Sbjct: 61 FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP IP KNF A+TRLD NRAK QLA KAGV V N+
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
IWGNHS TQVPDF +A ++G PVKE+IKD KWLE F T+Q+ RG +I+ G SS
Sbjct: 181 IIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQ---RGAAVIEARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + +D ++ VT TPEGDW S GVY++GNPYGI E I+FS P KGDG++E+V+
Sbjct: 238 AASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVE 297
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCV 419
+ DD++R ++ TE ELL EK+
Sbjct: 298 GLPLDDFVRGKLDATEDELLEEKEEA 323
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 489 bits (1261), Expect = e-174
Identities = 176/329 (53%), Positives = 229/329 (69%), Gaps = 5/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++A+G++LG DQP+ L+LL +L+ALEGV MEL+D
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL V I +P F+DA+ ALL+GA+PRGPGMER LL+ NG IF QGKALN VA+
Sbjct: 62 FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
R+VKV+VVGNP NTNALI +KNAP +PA+NF A+TRLD NRA QLA KAGV + M
Sbjct: 122 RDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS TQ PDF +A I+G P E+I D WLE+ F T+QK RG +I+ G SS
Sbjct: 182 TVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQK---RGAAIIEARGASS 238
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + +D ++ V TPEGDW S GV ++G+ YGI E ++F P + +G+YE+V+
Sbjct: 239 AASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGS-YGIPEGLIFGFPVTCE-NGEYEIVQ 296
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ DD+ R++I T EL E+ V HL
Sbjct: 297 GLEIDDFSREKIDATLAELEEERDAVKHL 325
|
Length = 326 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 486 bits (1252), Expect = e-172
Identities = 172/327 (52%), Positives = 223/327 (68%), Gaps = 7/327 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+++ ++GAAG I +LLF +A+GE+ G DQP+ L LL +++ALEGV MEL+D FPL
Sbjct: 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL 60
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V I +P E F+D + A+L+GA PR PGMERA LL N +IF EQG+ALN VA V
Sbjct: 61 LKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTV 120
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LKNAP++P KNF ALTRLD NRAK Q+A K GV V N+ IW
Sbjct: 121 KVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIW 180
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
GNHS TQVPD NA + G E + D +WL + F +T+QK RG +IKK G SS
Sbjct: 181 GNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQK---RGAAIIKKRGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A +I D +K + TP G+ S GVY+ GNPYGI IVFS PC KG G + +V+
Sbjct: 238 AASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGG-WHVVE 296
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVA 420
D+ +D+LR+++ TE+EL+ EK+
Sbjct: 297 DLKLNDWLREKLKATEEELIEEKEIAL 323
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 402 bits (1036), Expect = e-140
Identities = 162/324 (50%), Positives = 213/324 (65%), Gaps = 9/324 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL +A G+V GPDQP+ L LL +L+ALEGV MEL+D FPL
Sbjct: 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPL 62
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L+ V +P E F+D + A+L+GA PR GMER LL N +IF EQG+AL+ A +NV
Sbjct: 63 LKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNV 122
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KV+VVGNP NTNALI LK APSIP +NF ALTRLD NRAK Q+ALK GV V N+ IW
Sbjct: 123 KVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIW 182
Query: 277 GNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
GNHS+TQ PD +A + G P +E +KD WL F T+QK RG +IK S
Sbjct: 183 GNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQK---RGAAVIKARKLS 239
Query: 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 392
SA S A +I D + TPEG++ S GVY++G+ YG+ E ++FS P K +G +++V
Sbjct: 240 SAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGS-YGVPEGLIFSFPVTCK-NGKWKIV 297
Query: 393 KDVIFDDYLRKRIAKTEQELLAEK 416
+ + DD+ R++I T +EL+ EK
Sbjct: 298 QGLSIDDFSREKIDATAKELVEEK 321
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-107
Identities = 152/322 (47%), Positives = 204/322 (63%), Gaps = 8/322 (2%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V+GAAG I LL +A G +LG DQPI L LL +++ LEGV MEL D FPLL
Sbjct: 2 VVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLD 61
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V +P F D + A+L+GA PR GMER LL N +IF EQG+AL+ +A ++ KV
Sbjct: 62 GVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKV 121
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNAL+ APSIP KNF ALTRLD NRA Q+A +AGV V N+ IWGN
Sbjct: 122 LVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGN 181
Query: 279 HSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
HS+TQ PD +A + PV+E IKD +L+ F T+Q+ RG +I+ SSA
Sbjct: 182 HSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQ---RGAAIIRARKLSSA 238
Query: 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 394
S A + VD M V TPEG + S GVY++G+PYG+ + ++FS P K +G++++V+
Sbjct: 239 LSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCK-NGEWKIVEG 297
Query: 395 VIFDDYLRKRIAKTEQELLAEK 416
+ DD RK++A T +EL E+
Sbjct: 298 LCVDDSSRKKLALTAKELEEER 319
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 2e-86
Identities = 126/305 (41%), Positives = 179/305 (58%), Gaps = 9/305 (2%)
Query: 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175
+A G +LGPDQP+ L +L + +AL GV MEL D+ FPLL+ V + E +
Sbjct: 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNI 61
Query: 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235
A+++G PR GMER ++ N I+ Q AL A+ + KV+VV NP NTNALI +
Sbjct: 62 AVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF 121
Query: 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-- 293
APSIP KN LTRLD NRA Q++ + GV V N+ IWGNHS+TQ PD +A +
Sbjct: 122 APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKTP 181
Query: 294 --GLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTP 351
PV+E++ D WL F T+Q+ RG +IK SSA S A S D ++ V
Sbjct: 182 SGEKPVRELVADDAWLNGEFITTVQQ---RGAAIIKARKLSSALSAASSACDHIRDWVLG 238
Query: 352 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411
TPEG W S GVY++G+ YG+ +++S P + G++ +V+ + D++ RK++ T +E
Sbjct: 239 TPEGTWVSMGVYSDGS-YGVPPGLIYSFPVTCEK-GEWSIVQGLSIDEFSRKKMDATAKE 296
Query: 412 LLAEK 416
L EK
Sbjct: 297 LKEEK 301
|
Length = 309 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 2e-71
Identities = 95/320 (29%), Positives = 139/320 (43%), Gaps = 58/320 (18%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-L 157
IAV GA G + L F LA G V I L L + + L+GVAM+L+D++ PL
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSV---LLAIELVLYDIDE--EKLKGVAMDLQDAVEPLAD 55
Query: 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V I +PYE F+DA+ ++ R PGM R LL N I E G + + +
Sbjct: 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAW 114
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
+IVV NP + + + + +P + L LD R + LA K GV D V + I G
Sbjct: 115 IIVVSNPVDIITYLVWRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDV-KVYILG 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAAST 337
H +QVPD+ RI
Sbjct: 173 EHGGSQVPDWSTVRI--------------------------------------------- 187
Query: 338 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIF 397
A SI D ++SL+ EG+ GV NG GI +D+V S+PC +G E ++ V
Sbjct: 188 ATSIADLIRSLL--NDEGEILPVGVRNNGQ-IGIPDDVVVSVPCIVGKNGVEEPIE-VGL 243
Query: 398 DDYLRKRIAKTEQELLAEKK 417
D+ +++ K+ L E +
Sbjct: 244 TDFELEKLQKSADTLKKELE 263
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 7e-69
Identities = 104/307 (33%), Positives = 167/307 (54%), Gaps = 2/307 (0%)
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
L +A G++ G ++P+ L LL +L LE +AMELED FP L + E F+
Sbjct: 1 LSHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFK 59
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D + A L+ + P PG RA LL N IF G+AL+ A VKV+V+GNP NTN L+
Sbjct: 60 DIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLV 119
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
+ +AP + A+NF +L LD NRA ++A K V D + ++ +WGNH+ + V D +A
Sbjct: 120 AMLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAE 179
Query: 292 INGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTP 351
+ + D + + + + R +++ G +SAAS + + MK+ +
Sbjct: 180 FTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFG 239
Query: 352 TPEGDWFSSGV-YTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410
T G+ S G+ GNPYGI ++FS PC DG +V++ + +L+ ++A+TE+
Sbjct: 240 TRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEK 299
Query: 411 ELLAEKK 417
+L E++
Sbjct: 300 DLFEERE 306
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 208 bits (533), Expect = 3e-64
Identities = 92/326 (28%), Positives = 157/326 (48%), Gaps = 20/326 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F L + LG + L L+ + + + EGVA++L + PL
Sbjct: 3 VAVIGA-GNVGSSLAF-LLLLQGLGSE----LVLI--DINEEKAEGVALDLSHAAAPLGS 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+VKI G YE + A+ ++ PR PGM R LL+ N +I + KA+ A +
Sbjct: 55 DVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAI 113
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG 277
V+VV NP + I +K + + + T LD R + LA K GV V I G
Sbjct: 114 VLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVI-G 172
Query: 278 NHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAAS 336
H T VP + A + G P++E++K D + E E ++ G +I+ G +
Sbjct: 173 EHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRN---AGAEIIEAKGAGTYYG 229
Query: 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 396
A ++ +++++ E VY +G YG+ ED+ F +P +G E++ +++
Sbjct: 230 PAAALARMVEAIL--RDEKRVLPVSVYLDGE-YGV-EDVYFGVPAVLGKNGVEEIL-ELL 284
Query: 397 FDDYLRKRIAKTEQELLAEKKCVAHL 422
D ++++ K+ +EL + V L
Sbjct: 285 LSDDEQEKLDKSAEELKKNIELVKEL 310
|
Length = 313 |
| >gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 7e-60
Identities = 110/350 (31%), Positives = 171/350 (48%), Gaps = 27/350 (7%)
Query: 83 DLKAEEETKSWKKMVN---IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL 139
+++ EEE + +N + ++ A+ + HL+ LA+GEV G ++ I++ LL S +L
Sbjct: 109 EVEKEEEEL--RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENL 166
Query: 140 QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQ 199
+ L+G+ ME+ED FPLLR + + + F+DA +L+ G + G +
Sbjct: 167 EKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVA 226
Query: 200 IFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I G + A +VKVIV G N I +K APSIP KN A+ RL ENRAK
Sbjct: 227 ICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQENRAKAL 286
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGL------------PVKEIIKDHKW 306
LA K V + ++ +WGN D AR+ PV E++ D KW
Sbjct: 287 LARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKW 346
Query: 307 LEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 366
+ F T++ + +A S A +I + +P G+ FS GV + G
Sbjct: 347 INGEFVATLKSLSSSL-------NHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEG 399
Query: 367 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 416
YGI E IVFSMP + + G +E+V D+ + LR+ + + +L+ EK
Sbjct: 400 W-YGIPEGIVFSMPVKFQN-GSWEVVTDLELSEILREVLKRITSDLIQEK 447
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 452 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 5e-51
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP----VKEIIKD 303
T LD RA+ LA K GV + N+ + G HS TQ PD+ +A++ +P VKE +KD
Sbjct: 1 TTLDTARARTFLAEKFGV-DPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKD 59
Query: 304 HKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVY 363
W E E +Q G +I+ S+ S A + K+++ T G S GVY
Sbjct: 60 TDWELEELIERVQN---AGYEVIEAKAGSTTYSMAYAAARIAKAILRGT--GGVLSVGVY 114
Query: 364 TNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 423
+G YG +DI FS+P DG ++V+ + +D+ R+++ K+ EL E +
Sbjct: 115 LDGY-YGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAFV 173
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 4e-43
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
V +AV GA G + + L F LA + L + L L+ + EGVAM+L L
Sbjct: 1 VKVAVVGAGGGVGSSLAFALA-LQGLADE----LVLVDINK--DKAEGVAMDLSHGSTFL 53
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
+G + YE +DA+ ++ PR PGM R LL+ N IF + A+ A +
Sbjct: 54 SVPGIVGGDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAP-DA 112
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
V+VV NP + I K + P + +
Sbjct: 113 IVLVVSNPVDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 7e-15
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 7/206 (3%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N YE +D++ ++ R M R LL ING+I +++ N VI V
Sbjct: 64 GTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVK-KYCPNAFVICVT 122
Query: 223 NPCNTNALICLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + IP+ + LD +R +C LA K GV VS + I G H
Sbjct: 123 NPLDCMVKV-FQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVI-GGHGD 180
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA-STAVS 340
VP +NG+P+ + +K E+ E I+K R GG ++K + SA + A +
Sbjct: 181 LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAA 240
Query: 341 IVDAMKSLVTPTPEGDWFSSGVYTNG 366
IV +++ + E VY NG
Sbjct: 241 IVAMIEAYL--KDEKRVLVCSVYLNG 264
|
Length = 319 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 11/237 (4%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ +++ GA+G + + LA +V+ + L+ +SL+ L+G+ +++ D+L
Sbjct: 1 MKVSIIGASGRVGSATALLLAKEDVVK-----EINLISRPKSLEKLKGLRLDIYDALAAA 55
Query: 157 LREVKIGIN-PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ +I I+ ++ ++ PR GM R L N +I + K + A + +
Sbjct: 56 GIDAEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFAPD 114
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
K++VV NP + LK + + F T LD R K +A V +V I
Sbjct: 115 TKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRII 174
Query: 276 WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
G H + VP + I G+P+K ++ + + ++ V+ G +I G S
Sbjct: 175 -GEHGDSMVPLISSTSIGGIPIKRFP---EYKDFDVEKIVETVKNAGQNIISLKGGS 227
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 143 EGVAMELEDSLFPLLR-EVKI-GINPYELFEDAEWALLIGA-KPRGPGMERAGLLDINGQ 199
+G A+++ + P+L + K+ G N YE ++ ++I A PR PGM R LL N +
Sbjct: 36 QGKALDISQAA-PILGSDTKVTGTNDYEDIAGSD-VVVITAGIPRKPGMSRDDLLGTNAK 93
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
I E + + A N VIVV NP + + K + + LD R + +
Sbjct: 94 IVKEVAENIKKYAP-NAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI 152
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
A + GV V M + G H T VP + + G+P+ E+I + E +++ R
Sbjct: 153 AEELGVSVKDVQAMVL-GGHGDTMVPLPRYSTVGGIPLTELITKEEI-----DEIVERTR 206
Query: 320 LRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIA 372
G ++ SA A+ +V+A+ K V P Y G YGI
Sbjct: 207 NGGAEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPC--------SAYLEGE-YGI- 256
Query: 373 EDIVFSMPCRSKGDGDYELVKDVI 396
+DI +P +G V+ +I
Sbjct: 257 KDIFVGVPVVLGKNG----VEKII 276
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 9e-11
Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 44/301 (14%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAA---GEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
I++ GA G + L LA G+V+ L +G A+++ +
Sbjct: 1 ARKKISIIGA-GNVGATLAHLLALKELGDVV---------LFD--IVEGVPQGKALDIAE 48
Query: 152 SLFPLLREVKI-GINPYELFEDAEWALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALN 209
+ + KI G N YE ++ ++I A PR PGM R LL IN +I + + +
Sbjct: 49 AAPVEGFDTKITGTNDYEDIAGSD-VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIK 107
Query: 210 AVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYD 268
A + VIVV NP + + LK P + LD R + +A + V
Sbjct: 108 KYAP-DAIVIVVTNPVDAMTYVALK-ESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVK 165
Query: 269 KVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328
V+ + G H + VP + + G+P+++++ K L+ E +++ R G ++
Sbjct: 166 DVTAFVL-GGHGDSMVPLVRYSTVGGIPLEDLLSKEK-LD----EIVERTRKGGAEIVGL 219
Query: 329 WGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
SA A++ +V+A+ K V P Y G YG+ +D+ +P
Sbjct: 220 LKTGSAYYAPAASIAEMVEAILKDKKRVLPC--------SAYLEGE-YGV-KDVYVGVPV 269
Query: 382 R 382
+
Sbjct: 270 K 270
|
Length = 307 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 30/293 (10%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K L L +EG+ A+++ ++ + K+ G N Y +++ ++
Sbjct: 20 LAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGL 79
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R LL +N I E + S N ++VV NP + + + + +
Sbjct: 80 PRKPGMSREDLLSMNAGIVREVTGRI-MEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKER 138
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
LD R + +A++ GV V+ + G H VP + + G+PV ++I
Sbjct: 139 VIGQAGVLDSARFRTFIAMELGVSVQDVTACVL-GGHGDAMVPLVRYSTVAGIPVADLIS 197
Query: 303 DHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEG 355
E E +++ R GG ++ + SA A++ V +V+A+ + V P
Sbjct: 198 -----AERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPC--- 249
Query: 356 DWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408
Y +G YGI + I +P +G E + ++ D + K+
Sbjct: 250 -----AAYLDGQ-YGI-DGIYVGVPVILGKNG-VEHIYELKLDQSELALLNKS 294
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 62/271 (22%), Positives = 94/271 (34%), Gaps = 44/271 (16%)
Query: 160 VKIGINPYELFEDAEWALLIGAKPR---GPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
KI Y+ DA+ ++I A P G +R L N +I E + V V
Sbjct: 56 TKIRAGDYDDCADAD-IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAV 114
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
+I++ NP + I K T LD R + +A K GV V+ +
Sbjct: 115 -IILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVL- 172
Query: 277 GNHSTTQVPDFLNARINGLPVKEIIK-------DHKWLEEGFTETIQKVRLRGGLLIKKW 329
G H + P + I GLP+ E+ D L E + V K W
Sbjct: 173 GEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDV-----FNRKGW 227
Query: 330 GRSSAASTAVSIVDAMK---SLVTP--TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSK 384
+ A +A ++ A+ + P T SG Y D+ S+P
Sbjct: 228 TNAGIAKSASRLIKAILLDERSILPVCTL-----LSGEYGL-------SDVALSLPTVIG 275
Query: 385 GDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415
G E V ++ D+ E E L +
Sbjct: 276 AKG-IERVLEIPLDE--------WELEKLHK 297
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 12/264 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+ +A +L+ + + + +G A++L + L + Y DA+ ++ PR
Sbjct: 19 AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR 78
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244
PG R L++ N I L + ++VV NP + + K + +
Sbjct: 79 KPGETRLDLINRNAPILRSVITNLKK-YGPDAIILVVSNPVDILTYVAQKLSGLPKNRVI 137
Query: 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
+ T LD R + LA K V V + + G H +QV + A + GLP++E+
Sbjct: 138 GSGTLLDSARFRSLLAEKLDVDPQSV-HAYVLGEHGDSQVVAWSTATVGGLPLEELAPFT 196
Query: 305 KW-LEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVY 363
K LE E R G +I+ G ++ A +I D +KS++ E
Sbjct: 197 KLDLEAIEEEV----RTSGYEIIRLKGATNYG-IATAIADIVKSIL--LDERRVLPVSAV 249
Query: 364 TNGNPYGIAEDIVFSMPCRSKGDG 387
G YGI ED+ S+P +G
Sbjct: 250 QEGQ-YGI-EDVALSVPAVVGREG 271
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 21/246 (8%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
EG A++LED+L L VKI Y +DA+ ++ P+ PG R LL+ N +I
Sbjct: 39 EGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMK 98
Query: 203 EQGKALNAVASRNVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLA 260
+ A + +V NP + T + L P + T LD R + LA
Sbjct: 99 SIVPKIKASGFDGI-FLVASNPVDVITYVVQKLSGLP--KNRVIGTGTSLDTARLRRALA 155
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRL 320
K V V + G H +Q + + G P+ +++K+ K E E + VR
Sbjct: 156 EKLNVDPRSVHAYVL-GEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRK 214
Query: 321 RGGLLIKKWGRSS--AASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 375
G +I G + A+ IV A+ ++ + P Y +G YG +D+
Sbjct: 215 AGYEIINGKGATYYGIATALARIVKAILNDENAILPV--------SAYLDGE-YGE-KDV 264
Query: 376 VFSMPC 381
+P
Sbjct: 265 YIGVPA 270
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 66/276 (23%), Positives = 104/276 (37%), Gaps = 61/276 (22%)
Query: 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQALE---GVAMELE 150
+AV GAAG I QP++L L SE SL + GVA +L
Sbjct: 1 KVAVLGAAGGIG----------------QPLSLLLKLQPYVSELSLYDIAGAAGVAADLS 44
Query: 151 DSLFPLLREVKIGINPY-------ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
+ + + A+ ++ PR PGM R L ++N I +
Sbjct: 45 HI------PTAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKD 98
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLA 260
A+ A + ++V+ NP N+ I LK +T LD RA +A
Sbjct: 99 LVAAV-AESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVA 157
Query: 261 LKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
G +V N+ + G HS T +P L ++ G + E+ I +++
Sbjct: 158 ELKGKDPMEV-NVPVIGGHSGETIIP--LISQCPGKVLFT--------EDQLEALIHRIQ 206
Query: 320 LRGGLLIK-KWGRSSA--------ASTAVSIVDAMK 346
G ++K K G SA A +S+V +K
Sbjct: 207 NAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLK 242
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 86/305 (28%), Positives = 121/305 (39%), Gaps = 67/305 (21%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL--LGSERSLQAL---EGVA 146
S KM +AV GAAG I L + LK SE SL + GVA
Sbjct: 4 SALKMFKVAVLGAAGGIGQPLS--------------LLLKQNPHVSELSLYDIVGAPGVA 49
Query: 147 MELE--DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQ 204
+L D+ + G + A+ L+ PR PGM R L + N I +
Sbjct: 50 ADLSHIDTP-AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRD- 107
Query: 205 GKALNAVASRNVKVI--VVGNPCNTNALIC---LKNAPSI-PAKNFHALTRLDENRAKCQ 258
+ AVAS K I +V NP N+ I LK A P K F +T LD RA+
Sbjct: 108 --LVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLF-GVTTLDVVRARKF 164
Query: 259 LALKAGVF-YDKVSNMTIWGNHS-TTQVPDFLNARING-LPVKEIIKDHKWLEEGFTETI 315
+A G+ YD N+ + G HS T VP L ++ LP +++ + ++ G E +
Sbjct: 165 VAEALGMNPYD--VNVPVVGGHSGVTIVP--LLSQTGLSLPEEQVEQITHRVQVGGDEVV 220
Query: 316 QKVRLRGGLLIKKWGRSSAA-STA-------VSIVDAMKSLVTPT----------PEGDW 357
+ K G SA S A S++ A++ PE +
Sbjct: 221 K----------AKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRPECPF 270
Query: 358 FSSGV 362
FSS V
Sbjct: 271 FSSPV 275
|
Length = 321 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 30/265 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
EG AM+L+ + L KI Y +DA+ ++ P+ PG R L+ N +I
Sbjct: 34 AEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIM 93
Query: 202 AEQGKALNAVASR-NVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
V S + +V NP + T L P + + T LD R +
Sbjct: 94 KS--IVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFP--KNRVIGSGTVLDTARLRYL 149
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI-QK 317
LA K GV + + I G H ++VP + +A I G+P+ + +K + E I ++
Sbjct: 150 LAEKLGV-DPQSVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKE 208
Query: 318 VRLRGGLLIKKWGRSS--AASTAVSIVDA----MKSLVTPTPEGDWFSSGVYTNGNPYGI 371
VR +I + G + IV+A ++ Y +G YGI
Sbjct: 209 VRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLP---------VSAYLDGE-YGI 258
Query: 372 AEDIVFSMPCRSKGDGDYELVKDVI 396
+D+ +P +G V+++I
Sbjct: 259 -KDVYIGVPAVLGRNG----VEEII 278
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 38/255 (14%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQ 199
EG AM+L P ++ V+I Y + A +++ GA + PG R LL N
Sbjct: 39 EGEAMDLAHGT-PFVKPVRIYAGDYADCKGA--DVVVITAGANQK-PGETRLDLLKRNVA 94
Query: 200 IFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK--NAPSIPAKNFHALTRLDENRAKC 257
IF E + + + ++VV NP + + K P P + + T LD R +
Sbjct: 95 IFKEIIPQI-LKYAPDAILLVVTNPVDVLTYVAYKLSGLP--PNRVIGSGTVLDTARFRY 151
Query: 258 QLALKAGVFYDKVSNM--TIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTE 313
L GV ++ I G H ++V + +A I G+P+ E K + EE E
Sbjct: 152 LLGEHLGV---DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREE 208
Query: 314 TIQKVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNG 366
++VR +I++ G + + A IV+A+ S++T S + +G
Sbjct: 209 IFEEVRNAAYEIIERKGATYYAIGLALA-RIVEAILRDENSVLTV--------SSL-LDG 258
Query: 367 NPYGIAEDIVFSMPC 381
YGI +D+ S+PC
Sbjct: 259 -QYGI-KDVALSLPC 271
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSLQALE----GVAMEL 149
+AV GAAG I Q +AL L GSE SL + GVA++L
Sbjct: 3 VAVLGAAGGIG----------------QALALLLKTQLPAGSELSLYDIAPVTPGVAVDL 46
Query: 150 EDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQI---FAEQ 204
S P ++K G +P E A+ L+ R PGM+R+ L ++N I E+
Sbjct: 47 --SHIPTAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEK 104
Query: 205 GKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAK 256
A + ++ NP NT I LK A +T LD R++
Sbjct: 105 V----AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSE 155
|
Length = 312 |
| >gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
EG AM+L ++ P KI Y +DA+ ++ P+ PG R L++ N +IF
Sbjct: 44 AEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIF 102
Query: 202 AEQGKALNAVASRNVKVI--VVGNPCN--TNALICLKNAPSIPAKN--FHALTRLDENRA 255
+ +AS I V NP + T A L P K + T LD R
Sbjct: 103 --KSIVGEVMAS-GFDGIFLVASNPVDILTYATWKLSGFP----KERVIGSGTSLDSARF 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ L+ K V V I G H T+ P + +A + G+P++E +++++ +E + I
Sbjct: 156 RYMLSEKLDVDPRSVHAYII-GEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEI 214
Query: 316 -QKVRLRGGLLIKKWG 330
+ VR +I+K G
Sbjct: 215 FENVRDAAYEIIEKKG 230
|
Length = 315 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 63/209 (30%), Positives = 85/209 (40%), Gaps = 46/209 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL----LGSERSLQ---ALEGVAMEL 149
V +AV GAAG I QP++L L L SE +L GVA +L
Sbjct: 1 VKVAVLGAAGGIG----------------QPLSLLLKLNPLVSELALYDIVNTPGVAADL 44
Query: 150 EDSLFPLLREVKIGINPYELFEDAEWALLIGAK--------PRGPGMERAGLLDINGQIF 201
S +V G E + A L GA PR PGM R L +IN I
Sbjct: 45 --SHINTPAKVT-GYLGPEELKKA----LKGADVVVIPAGVPRKPGMTRDDLFNINAGIV 97
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC----LKNAPSIPAKNFHALTRLDENRAKC 257
+ A+ A A ++++ NP N+ I K P + F +T LD RA
Sbjct: 98 RDLATAV-AKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLF-GVTTLDVVRANT 155
Query: 258 QLALKAGVFYDKVSNMTIWGNHS-TTQVP 285
+A G+ KV N+ + G HS T +P
Sbjct: 156 FVAELLGLDPAKV-NVPVIGGHSGVTILP 183
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 100.0 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 100.0 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 100.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 99.98 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 99.97 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 99.97 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 99.96 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.96 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 99.94 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.72 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.33 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.27 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.22 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.08 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.07 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.01 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.01 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.95 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.95 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.95 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.95 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.94 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.93 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.91 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.9 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.9 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.89 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 97.88 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.8 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 97.75 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 97.69 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.64 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.57 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.56 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.55 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.53 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.49 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.39 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.37 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.36 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.27 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.26 | |
| PF11975 | 232 | Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term | 97.25 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.24 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.24 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.22 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.22 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.13 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.1 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.09 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.08 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.07 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.07 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.06 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.05 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.02 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.02 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.0 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 96.99 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 96.98 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.98 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.92 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.89 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.88 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.87 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.84 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.76 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 96.73 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.71 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 96.68 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.68 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.61 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.54 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.53 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.43 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.4 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.37 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 96.37 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.36 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.33 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.25 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 96.25 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 96.22 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.22 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.18 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.16 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.15 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.12 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 96.1 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.07 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.06 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.04 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 96.03 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 96.02 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.02 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 96.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.0 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.0 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.97 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.96 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 95.94 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.93 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 95.92 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.9 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 95.89 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.84 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 95.81 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 95.8 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.76 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.75 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.71 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.7 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.7 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 95.69 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.68 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.65 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 95.65 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 95.63 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.62 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.62 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.54 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.54 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.52 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.43 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 95.42 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.41 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 95.39 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 95.39 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.38 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 95.32 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.31 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 95.31 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 95.3 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.24 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 95.23 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.22 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 95.18 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 95.17 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.17 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 95.14 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.12 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.11 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.11 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.1 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.1 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 95.09 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.08 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 95.08 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.08 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.06 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 94.95 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 94.95 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.94 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.93 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.9 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 94.88 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 94.87 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 94.84 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 94.82 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 94.8 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 94.78 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.77 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 94.76 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.75 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.72 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 94.66 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 94.65 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 94.65 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.65 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 94.65 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 94.64 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 94.63 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 94.63 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.59 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.57 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.55 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 94.54 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.52 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.5 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.49 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 94.48 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.46 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 94.44 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 94.43 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.38 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.38 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.36 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.34 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 94.33 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.31 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 94.3 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 94.3 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 94.29 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 94.29 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 94.26 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 94.25 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.23 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.23 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 94.23 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 94.23 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 94.21 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.2 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.2 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 94.19 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.18 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.17 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.13 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 94.1 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.08 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.05 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.05 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 94.05 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.03 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.02 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 94.02 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.0 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 94.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 94.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 93.99 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 93.97 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 93.97 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.93 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.93 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 93.91 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 93.89 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 93.87 | |
| PLN02712 | 667 | arogenate dehydrogenase | 93.87 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 93.8 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 93.79 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 93.79 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 93.75 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 93.74 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 93.74 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 93.71 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 93.71 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 93.7 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 93.69 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 93.68 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.65 | |
| PRK05717 | 255 | oxidoreductase; Validated | 93.63 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.59 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.58 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.57 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 93.54 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 93.54 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 93.54 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 93.52 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 93.52 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.51 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 93.51 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.5 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 93.5 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 93.49 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 93.46 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 93.43 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 93.42 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 93.38 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 93.38 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 93.38 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.37 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 93.36 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.35 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 93.35 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.35 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.33 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 93.31 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 93.3 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 93.29 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 93.25 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 93.23 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 93.23 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.22 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 93.21 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 93.2 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 93.15 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 93.14 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 93.14 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 93.13 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.11 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 93.1 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 93.1 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 93.06 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.03 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.03 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 92.98 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 92.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 92.95 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.93 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.91 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 92.91 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 92.86 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 92.86 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 92.83 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 92.81 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 92.78 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 92.77 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 92.75 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 92.73 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 92.73 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 92.71 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 92.7 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 92.64 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 92.61 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 92.6 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 92.54 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 92.54 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 92.52 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 92.52 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 92.51 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 92.5 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 92.43 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 92.43 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 92.43 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.4 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 92.39 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 92.39 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 92.38 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.37 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 92.37 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 92.35 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.32 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 92.29 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 92.26 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 92.24 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 92.15 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 92.15 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 92.14 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 92.12 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 92.1 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 92.09 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.06 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 92.06 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 92.03 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 91.99 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.97 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 91.96 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 91.96 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 91.96 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 91.95 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 91.94 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 91.94 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 91.93 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 91.92 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 91.91 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 91.89 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.86 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 91.83 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 91.82 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 91.76 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 91.76 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 91.71 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 91.68 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 91.59 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 91.57 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 91.57 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 91.57 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 91.55 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 91.51 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 91.49 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 91.48 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 91.46 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 91.44 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 91.44 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 91.37 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 91.33 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 91.29 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 91.27 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 91.25 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 91.22 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 91.16 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 91.13 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 91.13 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 91.03 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 91.0 | |
| PRK07411 | 390 | hypothetical protein; Validated | 90.97 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 90.89 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.86 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 90.81 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 90.8 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 90.75 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 90.68 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 90.67 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 90.67 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 90.65 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 90.6 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 90.59 | |
| PLN02494 | 477 | adenosylhomocysteinase | 90.58 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 90.49 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 90.47 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 90.45 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 90.4 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 90.39 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 90.35 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 90.27 | |
| PLN02928 | 347 | oxidoreductase family protein | 90.27 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.26 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 90.25 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 90.23 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 90.17 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 90.16 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 89.94 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 89.92 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 89.9 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 89.86 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 89.85 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 89.73 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 89.63 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 89.63 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 89.45 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 89.44 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 89.43 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 89.27 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 89.26 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 89.14 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 89.01 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 88.86 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 88.84 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 88.81 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 88.69 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 88.69 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.67 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 88.67 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 88.6 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 88.52 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 88.41 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 88.38 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 88.36 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 88.31 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 88.3 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 88.26 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.18 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 88.06 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 88.03 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 87.98 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 87.97 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 87.92 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.88 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 87.83 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 87.73 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 87.7 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 87.68 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 87.67 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 87.58 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 87.55 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 87.45 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 87.42 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 87.4 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 87.36 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 87.32 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 87.19 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.1 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 86.99 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 86.99 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 86.93 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 86.85 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.84 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 86.84 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 86.61 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 86.38 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 86.33 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 86.22 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.11 |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-105 Score=824.94 Aligned_cols=435 Identities=83% Similarity=1.282 Sum_probs=406.1
Q ss_pred eeeecCCC-----ccccceeccccccccccccCccccccCCCCCCCCCCeeEEEeccc-ccccccccCCCCCCCCCccee
Q 013466 4 VAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCYGV 77 (442)
Q Consensus 4 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v 77 (442)
||+++++. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|+++++++++.| +|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (444)
T PLN00112 3 VAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECYGV 81 (444)
T ss_pred chhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCceEE
Confidence 56666553 568889999999999999999999999999999999999999999 88888888887666 999999
Q ss_pred eEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc
Q 013466 78 FCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (442)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~ 157 (442)
||++||+++|++.+.|+++.||+||||+|+||+++++.|+.+++|+.||++.++++++|+++++++|++|||+|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~ 161 (444)
T PLN00112 82 FCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL 161 (444)
T ss_pred EEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999889999999999999999998888987777789999999999999999987776
Q ss_pred ccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCC
Q 013466 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP 237 (442)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~ 237 (442)
.++++++++|++++|||+||+++|.||+|||+|.|++..|++|+++++++|+++++|++++|++|||||+||+++++.++
T Consensus 162 ~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg 241 (444)
T PLN00112 162 REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP 241 (444)
T ss_pred CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC
Confidence 67888899999999999999999999999999999999999999999999999546999999999999999999999998
Q ss_pred CCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHH
Q 013466 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317 (442)
Q Consensus 238 ~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~ 317 (442)
.+|+|+||+||.||++||+++||+++|+++++|++++||||||++|||+||+++|+|+|+.+++.+.+|+.+ ++.++
T Consensus 242 ~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~---ei~~~ 318 (444)
T PLN00112 242 NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEE---EFTPK 318 (444)
T ss_pred CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHH---HHHHH
Confidence 787899999999999999999999999999999777999999999999999999999999999876666444 45556
Q ss_pred HhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCC
Q 013466 318 VRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIF 397 (442)
Q Consensus 318 v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L 397 (442)
++++|++|+++||+++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+++|+|||+||++|++|+++++++++|
T Consensus 319 v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L 398 (444)
T PLN00112 319 VQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEI 398 (444)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCC
Confidence 66799999999999998899999999999999988999999999999994499989999999999999999999966999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccC-CCCCCCCCCC
Q 013466 398 DDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDL-PEDTMLPGEM 442 (442)
Q Consensus 398 ~~~E~~~L~~sa~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 442 (442)
+++|+++|++|+++|.+|++|+.|++|+..+.|++ |+||||||||
T Consensus 399 ~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (444)
T PLN00112 399 DDYLRERIKKSEAELLAEKRCVAHLTGEGGAFCDLRPEDTMLPGEM 444 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccCCCCC
Confidence 99999999999999999999999999999999999 8999999998
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-89 Score=694.45 Aligned_cols=384 Identities=77% Similarity=1.239 Sum_probs=355.6
Q ss_pred ccccccccccCCCCCCCCCcceeeEEeecccchHH--hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 013466 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (442)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (442)
..|+|+.|.|++++.. +.|||||||+||++++.+ .+.|+++.||+||||+|+||+++++.|+.+++++++++|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3588888777777764 899999999999999987 4557789999999988999999999999999999888999999
Q ss_pred ccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh
Q 013466 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (442)
Q Consensus 133 ~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a 212 (442)
+|+|+++++++|++|||+|+.+++..++++++++|++++|||+||+++|.||+||++|.|++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999866666788888999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccc
Q 013466 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (442)
Q Consensus 213 ~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I 292 (442)
+|++++|++|||+|+||+++++.++.+|+|+||+||.||++||+++||+++++++++|+++|||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999987777999999999999999999999999999997569999999999999999999
Q ss_pred cCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCC
Q 013466 293 NGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 372 (442)
Q Consensus 293 ~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip 372 (442)
+|+|+.+++++..|. +.++.++++++|++|+++||+++|+++|.+++++|++|+.|+|+++++|+|++++|+.||++
T Consensus 241 ~G~pl~~~~~~~~~~---~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~ 317 (387)
T TIGR01757 241 GGRPAKEVIKDTKWL---EEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIA 317 (387)
T ss_pred CCEEhHHhcccccch---HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCC
Confidence 999999987655554 34556667779999999999999888999999999999999899999999999999229998
Q ss_pred CceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCCCCC
Q 013466 373 EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442 (442)
Q Consensus 373 ~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
+|+|||+||++|++|+++++.+++|+++|+++|++|+++|++|++++.+++++++..|-.|+|||+|||.
T Consensus 318 ~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T TIGR01757 318 EGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKSEDELLKEKECVAHLIGEGNAYCAVPEDTMLPGEN 387 (387)
T ss_pred CCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccCCCCC
Confidence 9999999999999999999657999999999999999999999999999999999999999999999995
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=541.93 Aligned_cols=310 Identities=29% Similarity=0.437 Sum_probs=280.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (442)
+||+|||| |+||+++++.|+..++.++ +.| + |+++++++|.++||.|+.+.....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~e---l~L--i--Di~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSE---LVL--I--DINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccce---EEE--E--EcccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999997 9999999999976665433 555 3 44578999999999999866656677766 67999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~ 255 (442)
||++||.||||||+|.||+..|++|+++++++|+++| ||++++++|||+|+|||+++++++.+++|+||+||.||++||
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~ 151 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARF 151 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHH
Confidence 9999999999999999999999999999999999996 999999999999999999999996544589999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchH
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA 335 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~ 335 (442)
+++||+++|+++++|+. ||+||||++|||+||+++|+|+|+.++++. +..+++++++++++++|++|++.||+++++
T Consensus 152 ~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~--~~~~~~~~i~~~v~~~g~eII~~kG~~t~~ 228 (313)
T COG0039 152 RTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKE--DTEEDLEELIERVRNAGAEIIEAKGAGTYY 228 (313)
T ss_pred HHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhc--ccHhHHHHHHHHHHhhHHHHHHccCccchh
Confidence 99999999999999996 999999999999999999999999999864 334567888889999999999999775567
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHH
Q 013466 336 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415 (442)
Q Consensus 336 s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 415 (442)
++|.+++++.++|+ +|+++|+|+++|++| +|| ++|+|||+||++|++|+++++ ++.|+++|+++|++|++.|+++
T Consensus 229 ~~A~a~a~~~~ail--~d~~~vl~~s~~l~G-~yg-~~dv~~gvP~~lg~~Gv~~ii-e~~l~~~E~~~l~~s~~~lk~~ 303 (313)
T COG0039 229 GPAAALARMVEAIL--RDEKRVLPVSVYLDG-EYG-VEDVYFGVPAVLGKNGVEEIL-ELLLSDDEQEKLDKSAEELKKN 303 (313)
T ss_pred hHHHHHHHHHHHHH--cCCCceEEEEEeecC-ccC-cCCeEEEeeEEEcCCCcEEEe-cCCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999 578999999999999 799 589999999999999999999 6999999999999999999999
Q ss_pred HHHHHHhh
Q 013466 416 KKCVAHLT 423 (442)
Q Consensus 416 ~~~~~~~~ 423 (442)
++.+..+.
T Consensus 304 i~~~~~~~ 311 (313)
T COG0039 304 IELVKELV 311 (313)
T ss_pred HHHHHHhh
Confidence 99988765
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=550.75 Aligned_cols=325 Identities=52% Similarity=0.837 Sum_probs=291.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
|++|.||+||||+|+||+++++.|+..++++.++++.|+|+|+..++++++|+++||+|+.+++..++++++++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 46789999999779999999999999999985566677777766566789999999999986665567888899999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
||+||+++|.|||||++|.|++..|++|+++++++|+++++|++++|++|||+|+||+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999998768999999999999999999999977887 88999 9999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++||+++||++++++|++|++.+||||||++|||+||+++|+|+|+.+++.+.+|. ..++.+++++++++|++.||+
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~kG~ 236 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWL---EDTFIPTVQKRGAAIIEARGA 236 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhH---HHHHHHHHHhhHHHHHhCcCC
Confidence 99999999999999999999745699999999999999999999999987543332 456667777799999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+.++..+++.+++|+.+.++++++|+|++++| +||+|+|+|||+||++| +|+++++.+++|+++|+++|++|++.
T Consensus 237 t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g-~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~~ 314 (326)
T PRK05442 237 SSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDG-SYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLAE 314 (326)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-ccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99875555568888888853228999999999999 89999999999999999 99999976799999999999999999
Q ss_pred HHHHHHHHHHhh
Q 013466 412 LLAEKKCVAHLT 423 (442)
Q Consensus 412 l~~~~~~~~~~~ 423 (442)
|+++++++.|++
T Consensus 315 l~~~~~~~~~~~ 326 (326)
T PRK05442 315 LEEERDAVKHLL 326 (326)
T ss_pred HHHHHHHHHhhC
Confidence 999999999874
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=543.06 Aligned_cols=320 Identities=58% Similarity=0.897 Sum_probs=286.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+++.||+||||+|+||+++++.|+.+++++-++++.|+|+|+..+.++++|+++||+|+.+++..+++++.++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46899999997799999999999999998855556677776655557799999999999866655677878999999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCC-CeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p-~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
|+||+++|.||||||+|.|++..|++|+++++++|++++ | ++++|++|||+|+||+++++.++++|+ |+||+ |.||
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~-~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 158 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVA-KKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD 158 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence 999999999999999999999999999999999999996 7 999999999999999999999955776 88997 9999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++||+++||+++|++|++|++.+||||||++|+|+||+++|+|+|+.+++.+..|+ +.++.+++++++++|++.||+
T Consensus 159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~kG~ 235 (323)
T TIGR01759 159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWL---EGEFIPTVQQRGAAVIEARGA 235 (323)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhH---HHHHHHHHHhhHHHHHhccCC
Confidence 99999999999999999997667999999999999999999999999987653332 556777788899999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+++|.++++.+++|+.+.++++++|+|++++|++||+|+|+|||+||++|++|+++++++++|+++|+++|++|++.
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~~ 315 (323)
T TIGR01759 236 SSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATEDE 315 (323)
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 99988889999999999953323899999999999559999999999999999999999995599999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++++++
T Consensus 316 lk~~~~~ 322 (323)
T TIGR01759 316 LLEEKEE 322 (323)
T ss_pred HHHHHhc
Confidence 9999865
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=543.65 Aligned_cols=317 Identities=30% Similarity=0.435 Sum_probs=288.7
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
.++++.+|+|.||+|+||+++++.|+++.+|+.||+|.|+|+|++.++++++|++|||+|++++++.++.+++++|++++
T Consensus 119 ~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~ 198 (452)
T cd05295 119 SKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFK 198 (452)
T ss_pred cCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhC
Confidence 35668999999999999999999999999999999999999988778899999999999999887777888899999999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCC--CeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccc
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALT 248 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p--~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT 248 (442)
|||+||+++|.||+|||+|.|++..|++|+++++++|++++ | ++++|++|||+|+||++++++++++|+ |+||+||
T Consensus 199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a-~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt 277 (452)
T cd05295 199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNA-KEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR 277 (452)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc
Confidence 99999999999999999999999999999999999999996 7 889999999999999999999988987 7888888
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccC------------cchhhhhhhccCChHHHHHHHH
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKDHKWLEEGFTETIQ 316 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G------------~p~~~~i~~~~~~~~e~~~~~~ 316 (442)
||++|++++||+++|+++++|++++||||||++|||+||+++|+| +|+.+++.+..|..+++.+.++
T Consensus 278 -lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~ 356 (452)
T cd05295 278 -LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLK 356 (452)
T ss_pred -hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHH
Confidence 779999999999999999999878999999999999999999987 9999998766665555555444
Q ss_pred HHhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCC
Q 013466 317 KVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 396 (442)
Q Consensus 317 ~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~ 396 (442)
.+++ .++| ++++++|.++++++++|+.++++++|+|+||+++| +||+|+|++||+||+++++|++.+. +++
T Consensus 357 ---~rg~---~rkg-sT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG-~YGip~gv~~S~Pviig~~Gve~V~-~L~ 427 (452)
T cd05295 357 ---SLSS---SLNH-EAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEG-WYGIPEGIVFSMPVKFQNGSWEVVT-DLE 427 (452)
T ss_pred ---HHHH---hccC-ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeecc-ccCCcCCEEEEEEEEEeCCeEEEEe-CCC
Confidence 3666 4444 55677999999999999976556899999999999 7999999999999999999998887 799
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 013466 397 FDDYLRKRIAKTEQELLAEKKCV 419 (442)
Q Consensus 397 L~~~E~~~L~~sa~~l~~~~~~~ 419 (442)
|+++|+++|++|+++|.+|++.+
T Consensus 428 L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 428 LSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999876
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-68 Score=493.58 Aligned_cols=327 Identities=49% Similarity=0.722 Sum_probs=317.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
|+++++|.|.||+|+||+++++.++.+.+|+.||||.|+++|+.+....++|+.|+|+||++|++..|..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs 252 (442)
.|+.|+.++.||++||+|.|++..|.+|+++.++++++|++|+++||+++||+|+++.++.++++.+|.++|...|+||.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccC----cchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G----~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
+|+..+||.++|++.++|.+++|||||+.+|+|++.+++|++ +|+.+.++|+.|.+.+|.+.+++ ||..+|++
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQk---RGaavi~a 237 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQK---RGAAVIKA 237 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHh---cchHhhhh
Confidence 999999999999999999999999999999999999999986 89999999999999999887776 99999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
|+.+|++|+|.+++++|++|+.|+++++|++++||++|+ ||+|+|..||+||++.+ |-|+++..++++++-++++..+
T Consensus 238 rk~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGs-Ygip~gli~SfPv~~k~-g~wkiVqgl~iddf~r~km~~t 315 (332)
T KOG1496|consen 238 RKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGS-YGIPDGLIFSFPVTIKN-GDWKIVQGLPIDDFSREKMDLT 315 (332)
T ss_pred hhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCC-CCCCCCeEEEcceEecC-CceEEEcCcchhHHHHHhhhhh
Confidence 999999999999999999999999999999999999995 99999999999999975 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 013466 409 EQELLAEKKCVAHLTG 424 (442)
Q Consensus 409 a~~l~~~~~~~~~~~~ 424 (442)
+++|.+|++++.++++
T Consensus 316 ~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 316 AKELKEEKDLAYSCLS 331 (332)
T ss_pred HHHHHHhHHHHHHhhc
Confidence 9999999999998875
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=525.80 Aligned_cols=321 Identities=58% Similarity=0.905 Sum_probs=288.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+||||+|+||+++++.|+.+++++.++++.|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 46899999977999999999999999998556777888877666777999999999998666556788889999999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.||+||++|.|++..|++|+++++++|++++.|++++|++|||+|+||+++++.+|++|+ |+||+ |.||++
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999524999999999999999999999976876 88999 999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
||++++|+++|+++++|++.+|||+||++++|+||+++++|+|+.+++.+.+|. +.++.+++++++++|+++||+++
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~kG~t~ 236 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWL---EDEFIPTVQKRGAAIIKARGASS 236 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhH---HHHHHHHHHhhHHHHHhCcCCcc
Confidence 999999999999999999756799999999999999999999998876543332 45666777789999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+.++.++++.+++|+.+.+++.++|+|++++| +||+|+|+|||+||++|++|+++++ +++|+++|+++|++|++.|+
T Consensus 237 ~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~l~ 314 (322)
T cd01338 237 AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDG-SYGIPEGLIFSFPVRSKGGGYEIVE-GLEIDDFAREKIDATLAELL 314 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC-ccCCCCCeEEEEEEEEeCCEEEEEe-CCCCCHHHHHHHHHHHHHHH
Confidence 875557899999999854333699999999999 8999999999999999999999998 69999999999999999999
Q ss_pred HHHHHHHH
Q 013466 414 AEKKCVAH 421 (442)
Q Consensus 414 ~~~~~~~~ 421 (442)
+|++.+.|
T Consensus 315 ~~~~~~~~ 322 (322)
T cd01338 315 EEREAVKH 322 (322)
T ss_pred HHHHHhhC
Confidence 99998765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-67 Score=521.76 Aligned_cols=301 Identities=21% Similarity=0.285 Sum_probs=269.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEecCcccccCCCcE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~~~~eal~dADi 175 (442)
||+|||| |+||+++|+.|+..+++++ +.|+ |+++++++|+++||+|+. ++. .++++++++|++++|||+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---lvL~----Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~y~~~~~aDi 71 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---IVLI----DVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGDYDDCADADI 71 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCcchhhHHHHHHHhhh-ccCCCCCEEEEECCHHHhCCCCE
Confidence 7999996 9999999999999999875 6663 556788999999999986 333 357777889999999999
Q ss_pred EEEeCCcCCCCCCc--HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHH
Q 013466 176 ALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (442)
Q Consensus 176 VIi~ag~~~kpg~~--r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~ 253 (442)
||+++|.||||||+ |+|++..|++|+++++++|++++ |++++|++|||+|+||+++++.++..++|+||+||.||++
T Consensus 72 vvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 72 IVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTA 150 (307)
T ss_pred EEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHH
Confidence 99999999999999 79999999999999999999996 9999999999999999999999954444999999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
||+++||+++|+++++|++ |||||||++|||+||+++|+|+|+.+++........+++++.++++++|++|++.||.++
T Consensus 151 R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~t~ 229 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGWTN 229 (307)
T ss_pred HHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCeeh
Confidence 9999999999999999997 899999999999999999999999998753111223467788888889999999999988
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+ .|.++++.+.+|+ .|++.++|+|++++| +|| ++|+|||+||++|++|+++++ +++|+++|+++|++|++.|+
T Consensus 230 ~~-ia~a~~~ii~ail--~d~~~v~~vsv~~~G-~yg-~~~v~~svP~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~i~ 303 (307)
T cd05290 230 AG-IAKSASRLIKAIL--LDERSILPVCTLLSG-EYG-LSDVALSLPTVIGAKGIERVL-EIPLDEWELEKLHKSAKAIR 303 (307)
T ss_pred HH-HHHHHHHHHHHHH--hCCCeEEEEEEeeCC-ccC-CCCEEEEEEEEEeCCCceEec-CCCCCHHHHHHHHHHHHHHH
Confidence 75 5667777777777 578999999999999 799 589999999999999999999 59999999999999999998
Q ss_pred HH
Q 013466 414 AE 415 (442)
Q Consensus 414 ~~ 415 (442)
+.
T Consensus 304 ~~ 305 (307)
T cd05290 304 ET 305 (307)
T ss_pred HH
Confidence 74
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-67 Score=525.19 Aligned_cols=317 Identities=50% Similarity=0.733 Sum_probs=283.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||||+|+||+++++.|+.++++++++.+.|+|+|++.+.++++|+++||.|+.+++...++++.++|++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999998899999999999999999876677787776654448899999999999766665667778899999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|++||.|++||++|.|++..|++|+++++++|+++|+|++++|++|||+|+||+++++.++.+|+ |+||+ |.||++||
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999559999999999999999999999965576 77866 99999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChH-HHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE-GFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~-e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
|++||++++++|++|++++||||||++|+|+||+++|+|+|+.++... .++++ ..+++.+++++++++|+++||+++|
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~-~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~ 238 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD-LLDEEWLNDEFVKTVQKRGAAIIKKRGASSA 238 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc-ccChHHHHHHHHHHHHhhHHHHHhccCcchh
Confidence 999999999999999767899999999999999999999999887532 12222 2456677788899999999999998
Q ss_pred HHHHHHHHHHHHHhhcCCCCC--cEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEG--DWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~--~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+++|.++++.+++|+. |++ +++|+|++++| +| |+|+|+|||+||++|++||++++ +++|+++|+++|++|++.
T Consensus 239 ~~~a~a~~~iv~ail~--~~~~~~v~~~s~~~~g-~y~gi~~~v~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~~s~~~ 314 (323)
T cd00704 239 ASAAKAIADHVKDWLF--GTPPGEIVSMGVYSPG-NPYGIPPGIVFSFPCTCKGGGWHVVE-DLKLNDWLREKLKATEEE 314 (323)
T ss_pred HHHHHHHHHHHHHHHh--CCCCCcEEEEEEEeCC-ccCCCCCceEEEEEEEEcCCEEEEec-CCCCCHHHHHHHHHHHHH
Confidence 8789999999999995 555 99999999999 79 99999999999999999999988 799999999999999999
Q ss_pred HHHHHHHH
Q 013466 412 LLAEKKCV 419 (442)
Q Consensus 412 l~~~~~~~ 419 (442)
|+++++++
T Consensus 315 l~~~~~~~ 322 (323)
T cd00704 315 LIEEKEIA 322 (323)
T ss_pred HHHHHHhh
Confidence 99998875
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=515.82 Aligned_cols=318 Identities=47% Similarity=0.702 Sum_probs=281.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..++++|++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999988999999999999999986334556777766656667999999999998655555554557799999999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHH
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~ 257 (442)
+++|.|+++|++|.+++..|++|+++++++|+++++|++++|++|||+|+||+++++.++++|+|+||+||.||++||++
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999995599999999999999999999999888889999999999999999
Q ss_pred HHHHHhCCCcCcccceEEEeecCCCccccccccccc-C---cchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 258 ~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~-G---~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+.+|+ ..++.+++++++++|++.+|++.
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~k~~~t 237 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYL---DGEFITTVQQRGAAIIRARKLSS 237 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhH---HHHHHHHHHhCHHHHHhccCCCH
Confidence 999999999999976799999999999999999999 9 9999987653342 44566677779999999777555
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCc-cCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP-YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~-ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l 412 (442)
.+++|.++++.+++|+.|.|++.++|+|++++| + ||+|+|+|||+||++|++|+ +++.+++|+++|+++|++|++.|
T Consensus 238 ~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g-~~yg~~~~v~~s~P~~ig~g~~-~~i~el~L~~~E~~~l~~s~~~l 315 (324)
T TIGR01758 238 ALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDG-SPYGVPKGLIFSFPVTCKNGEW-KIVEGLCVDDSSRKKLALTAKEL 315 (324)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCC-cccCCCCceEEEEEEEEcCCeE-EEecCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999988789999999999999 8 99989999999999995555 54546999999999999999999
Q ss_pred HHHHHHHH
Q 013466 413 LAEKKCVA 420 (442)
Q Consensus 413 ~~~~~~~~ 420 (442)
+++++++.
T Consensus 316 k~~~~~~~ 323 (324)
T TIGR01758 316 EEERDEAL 323 (324)
T ss_pred HHHHHHhh
Confidence 99998763
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=517.38 Aligned_cols=305 Identities=21% Similarity=0.310 Sum_probs=273.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (442)
+||+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+. ++...+.++. ++|++++|||+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~Li----Di~~~~~~g~a~DL~~~~-~~~~~~~i~~~~dy~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADE---LALV----DVNPDKLRGEMLDLQHAA-AFLPRTKILASTDYAVTAGSDL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEEE----eCCCchhhHHHHHHHhhh-hcCCCCEEEeCCCHHHhCCCCE
Confidence 69999996 9999999999999999875 6663 456788999999999997 4443356653 68999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.||+|||+|.|++.+|++|+++++++|+++| |++++|++|||+|++|++++++++ +|+ |+||+||.||++|
T Consensus 109 VVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~t~~~~k~sg-~p~~rviG~gt~LDs~R 186 (350)
T PLN02602 109 CIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVLTYVAWKLSG-FPANRVIGSGTNLDSSR 186 (350)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHHhC-CCHHHEEeecchHHHHH
Confidence 9999999999999999999999999999999999995 999999999999999999999995 776 8899999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCCC
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGRS 332 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~s 332 (442)
++++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++.+. .++++++.++.+++++++++|++.||.+
T Consensus 187 ~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t 265 (350)
T PLN02602 187 FRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYT 265 (350)
T ss_pred HHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999997 8999999999999999999999999987542 3445667888999999999999999988
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCC-CceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA-EDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 333 s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip-~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+|+ +|.++++++.+++ +|++.++|+|++++| +||+| +++|||+||++|++|+++++ +++|+++|+++|++|+++
T Consensus 266 ~~g-ia~a~a~ii~ail--~d~~~v~~vsv~~~g-~Yg~~~~~v~~s~P~~ig~~Gi~~i~-~l~L~~~E~~~l~~sa~~ 340 (350)
T PLN02602 266 SWA-IGYSVASLVRSLL--RDQRRIHPVSVLAKG-FHGIDEGDVFLSLPAQLGRNGVLGVV-NVHLTDEEAERLRKSAKT 340 (350)
T ss_pred HHH-HHHHHHHHHHHHH--hcCCCeEEEEEeccc-ccCCCCCCcEEEEEEEEeCCeeEEEe-cCCCCHHHHHHHHHHHHH
Confidence 764 6677777777777 589999999999999 79994 89999999999999999999 699999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++..+.
T Consensus 341 l~~~~~~ 347 (350)
T PLN02602 341 LWEVQSQ 347 (350)
T ss_pred HHHHHHH
Confidence 9976554
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=506.59 Aligned_cols=297 Identities=23% Similarity=0.331 Sum_probs=268.0
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeC
Q 013466 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (442)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~a 180 (442)
|||| |+||+++++.|+..+++++ |.|+ |+++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~L~----Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IVLI----DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EEEE----eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 6895 9999999999999999875 6663 556788999999999998555456788888999999999999999
Q ss_pred CcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHHHHHH
Q 013466 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (442)
Q Consensus 181 g~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~~~~l 259 (442)
|.||||||+|.|++.+|++|+++++++|++++ |++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999985 99999999999999999999998 5776 889999999999999999
Q ss_pred HHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC-ChHHHHHHHHHHhhhhHHHHHhcCCCchHHHH
Q 013466 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-LEEGFTETIQKVRLRGGLLIKKWGRSSAASTA 338 (442)
Q Consensus 260 A~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~-~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A 338 (442)
|+++|+++++|++ +||||||++|||+||+++|+|+|+.+++.+... ...++.++.++++.+|++|++.||+++|+ +|
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~-~a 228 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKGATYYG-IG 228 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCCeeeHH-HH
Confidence 9999999999996 899999999999999999999999998754211 12346678888999999999999998876 56
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 339 VSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 339 ~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
.++++++++|+ .|+++++|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|++.|++
T Consensus 229 ~a~~~~i~ail--~d~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 229 MAVARIVEAIL--HDENRVLPVSAYLDG-EYGI-KDVYIGVPAVLGRNGVEEII-ELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCEEEEEEEEEeCCeeEEEc-cCCCCHHHHHHHHHHHHHHhC
Confidence 68888888888 578999999999999 7998 68999999999999999999 699999999999999999873
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=506.16 Aligned_cols=307 Identities=23% Similarity=0.352 Sum_probs=276.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+..+||+|||| |+||+++++.|+..+++++ |.|+ |+++++++|+++||+|+. ++..++++++++|++++||
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e---l~L~----D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~a 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADE---LVII----DINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKDA 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCCC
Confidence 34579999996 9999999999999999764 6663 557788999999999998 5545678888999999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.||+|||+|.|++..|++|++++++.+++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LDs 152 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLDS 152 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHHH
Confidence 999999999999999999999999999999999999995 99999999999999999999998 4776 78999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC-ChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-LEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~-~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
+|+++++|+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..| ..++++++.++++++++++++.||+
T Consensus 153 ~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kg~ 231 (315)
T PRK00066 153 ARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKKGA 231 (315)
T ss_pred HHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999996 899999999999999999999999999876444 3456788888999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ .|.++++.+.+++ .|++.++|+|++++| +|| ++++|||+||++|++|+++++ +++|+++|+++|++|+++
T Consensus 232 t~~~-~a~~~~~i~~ail--~~~~~v~~~sv~~~g-~yg-~~~v~~S~Pv~ig~~Gv~~i~-~l~L~~~E~~~L~~s~~~ 305 (315)
T PRK00066 232 TYYG-IAMALARITKAIL--NNENAVLPVSAYLEG-QYG-EEDVYIGVPAVVNRNGIREIV-ELPLNDDEKQKFAHSADV 305 (315)
T ss_pred ehHH-HHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccC-CCCEEEEeEEEEeCCcEEEEc-CCCCCHHHHHHHHHHHHH
Confidence 8874 5666666677666 488999999999999 799 589999999999999999999 699999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++.++.
T Consensus 306 l~~~~~~ 312 (315)
T PRK00066 306 LKEIMDE 312 (315)
T ss_pred HHHHHHH
Confidence 9987664
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=504.17 Aligned_cols=304 Identities=21% Similarity=0.310 Sum_probs=271.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
.+||+|||| |+||+++++.|+..++.++ |.| + |+++++++|+++||+|+. ++.....+. +++|++++|||
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e---l~L--i--D~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~ad 73 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADE---LVL--V--DVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANSK 73 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCCC
Confidence 469999996 9999999999999998764 666 3 455688999999999998 443222443 57899999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.|++|||+|.|++.+|++|++++++.|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 74 ivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~~ 151 (312)
T cd05293 74 VVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDSA 151 (312)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHHH
Confidence 99999999999999999999999999999999999995 99999999999999999999998 5765 889999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... ....++++++.++++++|++|++.||.
T Consensus 152 R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~ 230 (312)
T cd05293 152 RFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGY 230 (312)
T ss_pred HHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999996 9999999999999999999999999987432 122345788889999999999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ +|.++++.+.+|+ +|++.+++++++++| +||+|+|++||+||++|++|+++++ .++|+++|+++|++|++.
T Consensus 231 t~~~-~a~a~~~ii~ail--~d~~~~~~vsv~~~g-~yg~~~d~~~svP~~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~~ 305 (312)
T cd05293 231 TSWA-IGLSVADLVDAIL--RNTGRVHSVSTLVKG-LHGIEDEVFLSLPCILGENGITHVI-KQPLTEEEQEKLQKSADT 305 (312)
T ss_pred chHH-HHHHHHHHHHHHH--cCCCeEEEEEEEeCC-ccCCCCCeEEEEeEEEeCCceEEEe-cCCCCHHHHHHHHHHHHH
Confidence 8875 6778888888888 578899999999999 7999999999999999999999999 599999999999999999
Q ss_pred HHHHH
Q 013466 412 LLAEK 416 (442)
Q Consensus 412 l~~~~ 416 (442)
|++..
T Consensus 306 i~~~~ 310 (312)
T cd05293 306 LWEVQ 310 (312)
T ss_pred HHHHh
Confidence 98754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=502.54 Aligned_cols=302 Identities=41% Similarity=0.628 Sum_probs=269.4
Q ss_pred HHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHH
Q 013466 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (442)
Q Consensus 116 L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~ 195 (442)
|+++++|+.++++.|+|+|++.++++++|++|||.|+..++...+++++++|++++|||+||+++|.||+||++|.|++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 56788999889999999987776699999999999998555545665566699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEE
Q 013466 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (442)
Q Consensus 196 ~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~V 275 (442)
.|++|++++++.|+++++|++++|++|||+|+||+++++.++.+++|+||+||.||++||+++||+++|+++++|+++||
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999964599999999999999999999999766669999999999999999999999999999955699
Q ss_pred EeecCCCcccccccccc----cCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh-cCCCchHHHHHHHHHHHHHhhc
Q 013466 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK-WGRSSAASTAVSIVDAMKSLVT 350 (442)
Q Consensus 276 iG~HG~t~vp~~S~a~I----~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~-kG~ss~~s~A~~i~~aI~~~l~ 350 (442)
|||||++|||+||+++| +|+|+.+++.+.+|+ ..++.++++.++++|++. +|++ ++++|.++++.+++|+.
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~---~~~i~~~v~~~g~~Ii~~~kg~t-~~~ia~a~~~iv~ai~~ 237 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWL---NGEFITTVQQRGAAIIKARKLSS-ALSAASSACDHIRDWVL 237 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhH---HHHHHHHHHHHHHHHHHccCccH-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999987543342 456667777899999997 5544 45688899999999886
Q ss_pred CCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013466 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 423 (442)
Q Consensus 351 ~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~ 423 (442)
+.|++.++|+|++++| +||+|+|+|||+||+++++|++.++ +++|+++|+++|++|+++|+++++.+.+.+
T Consensus 238 ~~~~~~v~~vsv~~~g-~YGi~~~v~~s~P~vlg~~gve~v~-~l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 238 GTPEGTWVSMGVYSDG-SYGVPPGLIYSFPVTCEKGEWSIVQ-GLSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred CCcCCeEEEEEEEecC-ccCCcCCeEEEEEEEEECCEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5478999999999999 7999899999999999999998887 699999999999999999999999997654
|
|
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=503.85 Aligned_cols=305 Identities=33% Similarity=0.551 Sum_probs=268.9
Q ss_pred HHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHh
Q 013466 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (442)
Q Consensus 113 a~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~d 192 (442)
.+.|+.+++|+ |+++.|+|+|++.++++++|+++||.|+.++......++++.+++++|||+||+++|.|||||++|.|
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 46788899999 89999999988877899999999999998444333334444447999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH-HHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCccc
Q 013466 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (442)
Q Consensus 193 ll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~-k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~ 271 (442)
++..|++|+++++++|++++.|++++|++|||+|+||++++ +.+ ++|+++||+||.||++||+++||++++++|++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999997456899999999999999994 665 7888899999999999999999999999999998
Q ss_pred ceEEEeecCCCcccccccccc--cCcchhhh--hhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchHHHHHHHHHHHHH
Q 013466 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKS 347 (442)
Q Consensus 272 ~~~ViG~HG~t~vp~~S~a~I--~G~p~~~~--i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~ 347 (442)
+.+||||||++|||+||+++| +|+|+..+ +.+ +| ...++.+++++++++|++.||+++|+.+|.++++.+++
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~~~-~~---~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~a 235 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELCR-DY---PEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKA 235 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhcCc-Hh---HHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHH
Confidence 767999999999999999999 99987654 221 12 35567777888999999999999988788899999999
Q ss_pred hhcCCCCCcEEEEeeeeCC-CccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013466 348 LVTPTPEGDWFSSGVYTNG-NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLT 423 (442)
Q Consensus 348 ~l~~~d~~~v~~~sv~~~G-~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~ 423 (442)
|+.++|+++++|+|++++| .+||+|+|+|||+||++|++|+++++++++|+++|+++|++|+++|++|++++.+++
T Consensus 236 il~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 236 WLFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred HhcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9977788999999999953 279998899999999999999999995599999999999999999999999987654
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-64 Score=504.18 Aligned_cols=320 Identities=50% Similarity=0.759 Sum_probs=280.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
++.||+|+||+|+||+++++.|+..++++.++...|+++|.+.+.++++|+++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 46899999988999999999999999986222234455555445567899999999997665556666666689999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R 254 (442)
+||++||.|+++|++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999996589999999999999999999998789887799999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCccccccccccc----CcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcC
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWG 330 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~----G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG 330 (442)
|+++||+++++++++|++.+||||||++|||+||+++|+ |+|+.+++++..|. +.++.+++++++++|++.++
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~---~~~i~~~v~~~g~~Ii~~~~ 237 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWL---NGEFISTVQKRGAAVIKARK 237 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchh---HHHHHHHHHhhHHHHHHccc
Confidence 999999999999999987679999999999999999999 99999987654443 45566677779999999644
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
++.+++.|.++++.+++|+.+.+++.++|+|++++| +||+|+|+|||+||++|++||++++ +++|+++|+++|++|++
T Consensus 238 g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g-~yg~~~~v~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~ 315 (325)
T cd01336 238 LSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDG-SYGVPEGLIFSFPVTCKNGKWKIVQ-GLSIDDFSREKIDATAK 315 (325)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCC-CcCCCCceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHH
Confidence 444556888899999999854346899999999999 8999999999999999999999998 79999999999999999
Q ss_pred HHHHHHHHH
Q 013466 411 ELLAEKKCV 419 (442)
Q Consensus 411 ~l~~~~~~~ 419 (442)
.|++|++.+
T Consensus 316 ~l~~e~~~~ 324 (325)
T cd01336 316 ELVEEKETA 324 (325)
T ss_pred HHHHHHHhh
Confidence 999999865
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=495.56 Aligned_cols=304 Identities=23% Similarity=0.353 Sum_probs=274.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |+||+++++.|+..++..+ |.|+ |+++++++++++||+|+.......+.+..+++++++|||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~e---i~l~----D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADE---LVLI----DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 38999995 9999999999999998654 6663 55678899999999998743334556667889999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|+++|.||+|||+|.|++.+|++|+++++++|++++ |++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 999999999999999999999999999999999995 99999999999999999999997 6776 88999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchH
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA 335 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~ 335 (442)
+++||+++|+++++|++ +||||||++++|+||+++|+|+|+.+++.+..|..+++.++.++++++|++|++.||.++|+
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~ 229 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYG 229 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 99999999999999997 99999999999999999999999999987666777778899999999999999999988865
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHH
Q 013466 336 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415 (442)
Q Consensus 336 s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 415 (442)
+|.++++.+++|+ .|++.++|+|++++| +|| ++|+|||+||++|++|+++++ +++|+++|+++|++|+++|++.
T Consensus 230 -~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg-~~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~~l~~~ 303 (306)
T cd05291 230 -IATALARIVKAIL--NDENAILPVSAYLDG-EYG-EKDVYIGVPAIIGRNGVEEVI-ELDLTEEEQEKFEKSADIIKEN 303 (306)
T ss_pred -HHHHHHHHHHHHH--cCCCEEEEEEEEecc-ccC-CCCEEEEEEEEEeCCCEEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 5567777788877 588999999999999 799 589999999999999999998 6999999999999999999976
Q ss_pred HH
Q 013466 416 KK 417 (442)
Q Consensus 416 ~~ 417 (442)
.+
T Consensus 304 ~~ 305 (306)
T cd05291 304 IK 305 (306)
T ss_pred hh
Confidence 43
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=462.23 Aligned_cols=305 Identities=21% Similarity=0.314 Sum_probs=275.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
..||.|+|+ |+||.+.++.++..++.++ ++|. |.++++++|.+|||+|.. +++..-++. ..+|.+.+|+|
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Lade---l~lv----Dv~~dklkGE~MDLqH~s-~f~~~~~V~~~~Dy~~sa~S~ 90 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADE---LVLV----DVNEDKLKGEMMDLQHGS-AFLSTPNVVASKDYSVSANSK 90 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhc---eEEE----ecCcchhhhhhhhhcccc-ccccCCceEecCcccccCCCc
Confidence 579999995 9999999999999999876 7774 556789999999999998 666544443 34899999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+|||...++|++|++++++|..|++.+.+++.+| +|++++|++|||+|+|||+.||.+ ++|+ |+||+||.|||+
T Consensus 91 lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-gfP~nRViGsGcnLDsa 168 (332)
T KOG1495|consen 91 LVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-GFPKNRVIGSGCNLDSA 168 (332)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-CCcccceeccCcCccHH
Confidence 9999999999999999999999999999999999999 699999999999999999999999 5776 999999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
|||++++++||++|+++++ ||+|||||+.||.||.+.|.|.++.++..+- ..+++.+.++-+++.+.+||||+.||+
T Consensus 169 RFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGy 247 (332)
T KOG1495|consen 169 RFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGY 247 (332)
T ss_pred HHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999997 9999999999999999999999999987553 346678888889999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
|+|+ .+.++++.+.+++ .|.+.++|+|+...| .|||.+|+|+|+||++|++|+..++ ..+|+++|.++|++|++.
T Consensus 248 Tswa-Iglsva~l~~ail--~n~~~i~~Vst~~kg-~~gI~~dVflSlPc~l~~~Gi~~vv-~~~Lt~~E~akL~kSa~t 322 (332)
T KOG1495|consen 248 TSWA-IGLSVADLAQAIL--RNLRRIHPVSTMVKG-LYGIDDDVFLSLPCLLGANGITHVV-KQKLTDEEVAKLKKSAKT 322 (332)
T ss_pred hHHH-HHHHHHHHHHHHH--hCcCceeeeeecccc-ccCCCCceEEecceeecCCchhhhh-cccCCHHHHHHHHHHHHH
Confidence 9985 5666666666666 589999999999999 7999999999999999999999999 799999999999999999
Q ss_pred HHHHHH
Q 013466 412 LLAEKK 417 (442)
Q Consensus 412 l~~~~~ 417 (442)
|.+..+
T Consensus 323 l~~~q~ 328 (332)
T KOG1495|consen 323 LLEAQK 328 (332)
T ss_pred HHHHHH
Confidence 987443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=479.55 Aligned_cols=311 Identities=24% Similarity=0.357 Sum_probs=277.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (442)
+.+||+|||| |+||+++++.|+..++ . ++.|+ |+++++++|.++|+.|+.........+. +++|++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~---~l~L~----Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-G---DVVLY----DVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-C---eEEEE----ECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4569999996 9999999999999886 3 26664 4455678899999999863222334443 4688999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCC-cceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p-~kvig~gT~LDs 252 (442)
|+||+++|.|++||++|.|++..|+++++++++.|+++| |++|+|++|||+|++++++++.+ ++| .|+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 999999999999999999999999999999999999996 99999999999999999999988 677 499999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--cC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK--WG 330 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~--kG 330 (442)
+|++++||+++|+++++|+. +|+||||+++||+||+++|+|+|+.+++++..|..++++++.++++.++++|++. ||
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~kg 231 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKKG 231 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999996 8999999999999999999999999998776688788899999999999999997 45
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
.+. +++|.++++.+.+|+ .|+++++|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|++
T Consensus 232 ~t~-~~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~~ 305 (319)
T PTZ00117 232 SAF-FAPAAAIVAMIEAYL--KDEKRVLVCSVYLNG-QYNC-KNLFVGVPVVIGGKGIEKVI-ELELNAEEKELFDKSIE 305 (319)
T ss_pred ChH-HHHHHHHHHHHHHHh--cCCCeEEEEEEEecc-ccCC-CCeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHH
Confidence 443 568888999999888 478999999999999 7999 49999999999999999999 59999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 013466 411 ELLAEKKCVAHLT 423 (442)
Q Consensus 411 ~l~~~~~~~~~~~ 423 (442)
.|++.++.+.+|+
T Consensus 306 ~l~~~~~~~~~~~ 318 (319)
T PTZ00117 306 SIQELTQKAKALI 318 (319)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988875
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-61 Score=478.40 Aligned_cols=297 Identities=24% Similarity=0.338 Sum_probs=266.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADiVI 177 (442)
|+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+...+ ..+++. +++|++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~l~----D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LVLV----DVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689996 9999999999999999865 6663 556788999999999998543 334443 46699999999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHHH
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~~ 256 (442)
+++|.|++|||+|.+++.+|++|+++++++|+++| |++++|++|||+|++|++++++++ +|+ |+||+||.||++|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg-~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSG-LPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhC-cCHHHEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999996 999999999999999999999995 765 899999999999999
Q ss_pred HHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchHH
Q 013466 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAAS 336 (442)
Q Consensus 257 ~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~s 336 (442)
+++|+++|+++++|++ +||||||+++||+||+++|+|+|+.+++++.+ ++++++.++++++++++++.||+++| +
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~---~~~~~l~~~v~~~~~~ii~~kg~t~~-~ 224 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTK---LDLEAIEEEVRTSGYEIIRLKGATNY-G 224 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccH---HHHHHHHHHHHHHHHHHHHccCcchH-H
Confidence 9999999999999997 89999999999999999999999999876533 34566677788899999999998886 4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHH
Q 013466 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 416 (442)
Q Consensus 337 ~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~ 416 (442)
+|.++++.+++|+ +|+++++|+|++++| +|| ++++|||+||++|++|+++++ +++|+++|+++|++|+++|++..
T Consensus 225 ~a~a~~~~~~ai~--~~~~~v~~~s~~~~g-~yg-~~~~~~s~Pv~ig~~Gi~~i~-~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 225 IATAIADIVKSIL--LDERRVLPVSAVQEG-QYG-IEDVALSVPAVVGREGVVRIL-EIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEEEEEecC-ccC-CCCEEEEEEEEEeCCCeEEEe-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 7888888888888 578999999999999 899 589999999999999999999 69999999999999999998753
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-60 Score=472.91 Aligned_cols=303 Identities=23% Similarity=0.344 Sum_probs=272.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.||+++++.|+..++..+ +.|+ |++++++++.++|+.|+. ++..+..+.++++++++|||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l~----D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVLV----DINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEEE----ECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 58999996 9999999999999998654 6663 556778899999999986 4444456667889999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|++++.|++||++|.+++..|+++++++++.|++++ |++++++++||+|+|++++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~-~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYA-PDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 999999999999999999999999999999999995 99999999999999999999999 5776 88999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
+++||+++++++++|++ +||||||+++||+||+++|+|+|+.+++.+. .++.++++++.+++++++++|++.||.++
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~ 228 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATY 228 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 99999999999999996 8999999999999999999999999987542 34556688888999999999999999887
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+ +|.++++.+++|+ .|++.++|+|++++| +||+ +++|||+||+||++|+++++ +++|+++|+++|++|++.|+
T Consensus 229 ~~-~a~a~~~i~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~ig~~Gv~~i~-~~~L~~~E~~~l~~s~~~i~ 302 (308)
T cd05292 229 YA-IGLALARIVEAIL--RDENSVLTVSSLLDG-QYGI-KDVALSLPCIVGRSGVERVL-PPPLSEEEEEALRASAEVLK 302 (308)
T ss_pred HH-HHHHHHHHHHHHH--cCCCcEEEEEEEEcc-cCCC-CCEEEEEEEEEeCCceEEec-CCCCCHHHHHHHHHHHHHHH
Confidence 64 5667777777777 588999999999999 7998 79999999999999999999 59999999999999999999
Q ss_pred HHHH
Q 013466 414 AEKK 417 (442)
Q Consensus 414 ~~~~ 417 (442)
+.++
T Consensus 303 ~~~~ 306 (308)
T cd05292 303 EAIE 306 (308)
T ss_pred HHHh
Confidence 8655
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=464.78 Aligned_cols=307 Identities=20% Similarity=0.306 Sum_probs=268.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFED 172 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~d 172 (442)
.+++||+|||| |+||+++++.++..++. .+.|+ |++++++++.++|+.|.........++. +++|++++|
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~----~i~Lv----Di~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~ 74 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLG----DVVLF----DIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAG 74 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEEE----eCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCC
Confidence 44579999995 99999999999998873 25563 4455678899999999853222234444 478899999
Q ss_pred CcEEEEeCCcCCCCCC-----cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCC-cceeec
Q 013466 173 AEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHA 246 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~-----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p-~kvig~ 246 (442)
||+||+++|.|++||+ +|.+++..|++++++++++|+++| |++++|++|||+|++++++++.+ ++| .|+||+
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviGl 152 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCGM 152 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHhc-CCChhhEEEe
Confidence 9999999999999999 999999999999999999999996 99999999999999999999988 566 599999
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii 326 (442)
||.||++|++++||+++|+++++|++ +|+||||+++||+||+++|+|+|+.+++....+..+++.++.++++++|++|+
T Consensus 153 gt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~ 231 (321)
T PTZ00082 153 AGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIV 231 (321)
T ss_pred cCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996 99999999999999999999999999875433455678888999999999999
Q ss_pred Hh--cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHH
Q 013466 327 KK--WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404 (442)
Q Consensus 327 ~~--kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~ 404 (442)
+. +|.+. +++|.++++.+++|+ .|++.++|+|++++| +||+ +|+|+|+||+||++|+++++ +++|+++|+++
T Consensus 232 ~~~gkg~t~-~~ia~a~~~i~~ail--~d~~~v~~vs~~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~ 305 (321)
T PTZ00082 232 DLLGTGSAY-FAPAAAAIEMAEAYL--KDKKRVLPCSAYLEG-QYGH-KDIYMGTPAVIGANGVEKII-ELDLTPEEQKK 305 (321)
T ss_pred hhcCCCccH-HHHHHHHHHHHHHHH--cCCCcEEEEEEEecc-cCCC-CCeEEEEEEEEeCCeEEEEe-CCCCCHHHHHH
Confidence 95 45555 457777777777777 588999999999999 7999 79999999999999999999 59999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013466 405 IAKTEQELLAEKKC 418 (442)
Q Consensus 405 L~~sa~~l~~~~~~ 418 (442)
|++|++.|++..+.
T Consensus 306 l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 306 FDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999986554
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-59 Score=464.26 Aligned_cols=296 Identities=22% Similarity=0.236 Sum_probs=248.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-Cc--ccccCCCc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~--~eal~dAD 174 (442)
||+||||+|+||+++++.|+.+++.++ +.| +|+ ++ ++|++|||+|+.. ..+++.++ ++ |++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e---lvL--~Di--~~--a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE---LSL--YDI--AG--AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE---EEE--ecC--CC--CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999988754 555 433 33 6799999999862 22344323 33 99999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH----HHHHHHHHCCCCCc-ceeeccch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~----lt~~~~k~s~~~p~-kvig~gT~ 249 (442)
+||+++|.||+||++|.|++..|++|+++++++|++++ |++++|++|||+|+ +|+++++.+ ++|+ |+||+|+
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 99999999999999999999999999999999999995 99999999999998 888888888 5665 8999986
Q ss_pred hhHHHHHHHHHHHhCCCcCcccceEEEeecCC-CcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 250 LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~-t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
||++||+++||+++|+++++|+. |||||||+ +|||+||++++ .+. +.++++.++.++++++|++|++.
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~--------~~~~~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL--------FTEDQLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC--------CCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999995 99999996 99999999984 232 22334677888888899999996
Q ss_pred ---cCCCch--HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCC-CCCHHHH
Q 013466 329 ---WGRSSA--ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLR 402 (442)
Q Consensus 329 ---kG~ss~--~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~-~L~~~E~ 402 (442)
+|.++| +.++..++++|..++ .|++.++|++ +++| +||. +|+|||+||++|++|+++++ ++ +|+++|+
T Consensus 216 k~gkg~t~~~ia~a~~~iv~ail~~~--~d~~~v~~~s-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~~L~~~E~ 289 (312)
T TIGR01772 216 KAGAGSATLSMAFAGARFVLSLVRGL--KGEEGVVECA-YVES-DGVT-EATFFATPLLLGKNGVEKRL-GIGKLSSFEE 289 (312)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHhh--CCCccEEEEE-EEcc-CCCc-CceEEEEEEEEcCCeeEEEE-ccCCCCHHHH
Confidence 455554 333344555555544 3678899965 9999 7996 89999999999999999999 57 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 013466 403 KRIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~~~ 424 (442)
++|++|++.|++..+.+..|..
T Consensus 290 ~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 290 KMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888764
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-59 Score=462.74 Aligned_cols=295 Identities=23% Similarity=0.308 Sum_probs=250.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---ccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal~dA 173 (442)
+||+||||+|+||+++++.|+.+++.++ +.| + |++ +++|+++||+|+... ..++...++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e---lvL--i--Di~--~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL--Y--DIV--NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE---EEE--E--ecC--ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 5999999779999999999999998764 555 4 333 789999999999721 234432133 8999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH----HHHHHHHCCCCCc-ceeeccc
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l----t~~~~k~s~~~p~-kvig~gT 248 (442)
|+||+++|.||+||++|+|++..|++|+++++++|++++ |++|+|++|||+|+| ++++++.+ ++|+ |+||+|+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999995 999999999999998 77888888 4665 8999976
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeec-CCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H-G~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~ 327 (442)
|||+|++++||+++|+++++|+ .+||||| |++|||+||++.+ +.+ ++++++.++.++++++|++|++
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~-~~v~GeHsGds~vp~~S~~~~----~~~------~~~~~~~~i~~~v~~~g~~Ii~ 215 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVN-VPVIGGHSGVTILPLLSQCQP----PFT------FDQEEIEALTHRIQFGGDEVVK 215 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEE-EEEEecCCCCceecccccccc----ccc------CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 4999999 8999999999974 222 2334577888889999999999
Q ss_pred hc---CCCchHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCC-CCCHHHH
Q 013466 328 KW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLR 402 (442)
Q Consensus 328 ~k---G~ss~~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~-~L~~~E~ 402 (442)
.| |.++ +++|.++++++++|+.. .+++.+++++ +++| + |. +|+|||+||++|++|+++++ ++ +|+++|+
T Consensus 216 ~k~gkg~t~-~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~-~l~~L~~~E~ 289 (310)
T cd01337 216 AKAGAGSAT-LSMAYAGARFANSLLRGLKGEKGVIECA-YVES-D-VT-EAPFFATPVELGKNGVEKNL-GLGKLNDYEK 289 (310)
T ss_pred CccCCCCcc-hhHHHHHHHHHHHHHHhcCCCcceEEEE-EEec-c-CC-CceEEEEEEEEeCCeEEEEe-CCCCCCHHHH
Confidence 74 5554 55888888888888843 3456788887 8777 3 65 79999999999999999998 58 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013466 403 KRIAKTEQELLAEKKCVAHL 422 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~ 422 (442)
++|++|++.|++..+.+..|
T Consensus 290 ~~l~~S~~~i~~~~~~g~~~ 309 (310)
T cd01337 290 KLLEAALPELKKNIEKGVDF 309 (310)
T ss_pred HHHHHHHHHHHHHHhhhccc
Confidence 99999999999988776655
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=460.02 Aligned_cols=299 Identities=22% Similarity=0.368 Sum_probs=259.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
+||+|||+ |.||+.+|+.|+..++. + +.|+ |++++...|.++|+.|.........+++ ++++++++|||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvlv----Di~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDi 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVLL----DVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEEE----eCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCE
Confidence 59999995 99999999999998874 2 6664 3355677889999988652211122342 567888999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|++||++|.|++..|.+++++++++|.+++ |++++|++|||+|+||+++++.++ +|+ |+||+||.|||+|
T Consensus 73 VIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg-~~~~rviG~g~~lds~R 150 (305)
T TIGR01763 73 VVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSG-FPKERVIGQAGVLDSAR 150 (305)
T ss_pred EEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHC-cCHHHEEEeccchHHHH
Confidence 9999999999999999999999999999999999995 999999999999999999999984 665 8999999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--cCCC
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK--WGRS 332 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~--kG~s 332 (442)
++++||+++++++++|+. +||||||++|||+||+++|+|+|+.+++.+ +++.++.++++.+|++|++. ||.+
T Consensus 151 ~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~-----~~~~~l~~~v~~~g~~ii~~~~kg~t 224 (305)
T TIGR01763 151 FRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNLLKQGSA 224 (305)
T ss_pred HHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCH-----HHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999996 899999999999999999999999998542 34677888888899999996 4556
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHH
Q 013466 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412 (442)
Q Consensus 333 s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l 412 (442)
.| ++|.++++.+.+++ .|++.++|+|++++| +||+ +|+|+|+||++|++|+++++ +++|+++|+++|++|++.|
T Consensus 225 ~~-~~a~~~~~i~~ai~--~~~~~v~~~s~~~~~-~yg~-~~v~~s~P~~ig~~Gv~~i~-~~~l~~~E~~~l~~s~~~i 298 (305)
T TIGR01763 225 YY-APAASVVEMVEAIL--KDRKRVLPCAAYLDG-QYGI-DGIYVGVPVILGKNGVEHIY-ELKLDQSELALLNKSAKIV 298 (305)
T ss_pred HH-HHHHHHHHHHHHHh--CCCCeEEEEEEEecc-cCCC-CceEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHH
Confidence 54 46666666666666 588999999999999 7998 89999999999999999999 5999999999999999999
Q ss_pred HHHHHH
Q 013466 413 LAEKKC 418 (442)
Q Consensus 413 ~~~~~~ 418 (442)
++..++
T Consensus 299 ~~~~~~ 304 (305)
T TIGR01763 299 DENCKM 304 (305)
T ss_pred HHHHhc
Confidence 986553
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-58 Score=458.09 Aligned_cols=304 Identities=23% Similarity=0.369 Sum_probs=265.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
|||+|+||+|.+|+++++.|+..+++++ |.| +|.+.+.+++++.++|++|+........+++ ++++++++|||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~---v~l--vd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE---INL--ISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EEE--EECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999889999999999999998754 555 3333345889999999998753222223343 346899999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|++||++|.+++..|+++++++++.|++++ |++++|+++||+|++|+++++.++ +|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g-~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESG-FDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcC-CCHHHEeeccchHHHHH
Confidence 9999999999999999999999999999999999986 999999999999999999999996 766 8999999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
++++||+++++++++|++ +|+||||++|||+||+++|+|+|+.+++... +++++++.++++++|++|++.||+++|
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~---~~~~~~i~~~v~~~g~~i~~~kg~t~~ 229 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYK---DFDVEKIVETVKNAGQNIISLKGGSEY 229 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhccc---HHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 999999999999999996 9999999999999999999999999986421 234667778888899999999999876
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
++|.++++.+.+|+ +|++.++|++|+++| +| |++ |+++|+||++|++|+++++ .++|+++|+++|++|++.|+
T Consensus 230 -~~a~~~~~ii~ail--~~~~~v~~vsv~~~g-~~~~~~-~~~~svP~~ig~~Gv~~i~-~l~l~~~E~~~l~~s~~~i~ 303 (309)
T cd05294 230 -GPASAISNLVRTIA--NDERRILTVSTYLEG-EIDGIR-DVCIGVPVKLGKNGIEEIV-PIEMDDDEREAFRKSAEIVK 303 (309)
T ss_pred -hHHHHHHHHHHHHH--CCCCeEEEEEEEECC-ccCCCC-CeEEEeEEEEcCCccEEEe-CCCCCHHHHHHHHHHHHHHH
Confidence 46666677777777 578999999999999 56 996 9999999999999999999 59999999999999999998
Q ss_pred HHHH
Q 013466 414 AEKK 417 (442)
Q Consensus 414 ~~~~ 417 (442)
+..+
T Consensus 304 ~~~~ 307 (309)
T cd05294 304 KYTR 307 (309)
T ss_pred HHHh
Confidence 7544
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=443.41 Aligned_cols=300 Identities=22% Similarity=0.378 Sum_probs=262.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
|+||+|||| |.||+++++.++..++. + +.|+ |++++++++.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~L~----D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VVLF----DIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EEEE----ECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 579999996 99999999999998764 3 6664 4466788999999998753333334554 46789999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.|++||++|.+++.+|++++++++++|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 99999999999999999999999999999999999996 99999999999999999999998 5665 899999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--cCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK--WGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~--kG~ 331 (442)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++. ++.++++.++++.+++++++. +|+
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~-----~~~~~~l~~~v~~~~~~ii~~~~kg~ 224 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLS-----KEKLDEIVERTRKGGAEIVGLLKTGS 224 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCC-----hHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999996 89999999999999999999999998742 334667777788899999986 665
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+. ++.|..+++.+.+++ .|++.+++++++++| +||+ +|++||+||++|++|+++++ ++.|+++|+++|++|++.
T Consensus 225 t~-~~~A~~~~~ii~ail--~~~~~~~~~~v~~~g-~yg~-~~~~~s~P~~i~~~Gv~~i~-~~~l~~~e~~~l~~s~~~ 298 (307)
T PRK06223 225 AY-YAPAASIAEMVEAIL--KDKKRVLPCSAYLEG-EYGV-KDVYVGVPVKLGKNGVEKII-ELELDDEEKAAFDKSVEA 298 (307)
T ss_pred hh-HHHHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCC-CCeEEEeEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHH
Confidence 54 446777788888877 478999999999999 6999 99999999999999999998 699999999999999999
Q ss_pred HHHHHHH
Q 013466 412 LLAEKKC 418 (442)
Q Consensus 412 l~~~~~~ 418 (442)
|++.++.
T Consensus 299 l~~~~~~ 305 (307)
T PRK06223 299 VKKLIEA 305 (307)
T ss_pred HHHHHHh
Confidence 9986653
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=444.02 Aligned_cols=301 Identities=23% Similarity=0.258 Sum_probs=258.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--Cc-ccc
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YEL 169 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~-~ea 169 (442)
..+|.||+||||+|+||+++++.|+..++.++ +.| +|+ ++++++++||+|+.. ...+...+ ++ |++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e---lvL--~Di----~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE---LSL--YDI----VGAPGVAADLSHIDT--PAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE---EEE--Eec----CCCcccccchhhcCc--CceEEEecCCCchHHH
Confidence 45688999999889999999999998887654 555 433 457899999999863 22333222 23 899
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH----HHCCCCCc-cee
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNF 244 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~----k~s~~~p~-kvi 244 (442)
++|||+||+++|.|++||++|.+++..|++++++++++|.++ +|+++++++|||+|+++++++ +.+ ++|+ |+|
T Consensus 74 l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~vi 151 (321)
T PTZ00325 74 LRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKLF 151 (321)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhee
Confidence 999999999999999999999999999999999999999998 599999999999999999985 766 5665 899
Q ss_pred eccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCC-CcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhH
Q 013466 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGG 323 (442)
Q Consensus 245 g~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~-t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ 323 (442)
|+|+ |||+||+++||+++|++|++|++ |||||||+ +|||+||++ |+|+. .+++.++.++++++|+
T Consensus 152 G~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~---------~~~~~~i~~~v~~~g~ 217 (321)
T PTZ00325 152 GVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLP---------EEQVEQITHRVQVGGD 217 (321)
T ss_pred echh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCC---------HHHHHHHHHHHHHHHH
Confidence 9985 99999999999999999999995 99999999 899999998 77753 2346778888888999
Q ss_pred HHHHhc---CCCchHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCH
Q 013466 324 LLIKKW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 399 (442)
Q Consensus 324 eii~~k---G~ss~~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~ 399 (442)
+|++.| |++. ++.|.++++.+++|+.. +|++.+++++ +++| +||+ +|+|||+||++|++|++++++.++|++
T Consensus 218 ~Ii~~k~~kg~t~-~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g-~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~ 293 (321)
T PTZ00325 218 EVVKAKEGAGSAT-LSMAYAAAEWSTSVLKALRGDKGIVECA-FVES-DMRP-ECPFFSSPVELGKEGVERVLPIGPLNA 293 (321)
T ss_pred HHHhcccCCCCch-HHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEec-CCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCH
Confidence 999976 4444 55788888888888753 3578899985 9999 7997 899999999999999999994399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 013466 400 YLRKRIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 400 ~E~~~L~~sa~~l~~~~~~~~~~~~ 424 (442)
+|+++|++|++.|++.++.+..|.+
T Consensus 294 ~E~~~l~~S~~~i~~~~~~~~~~~~ 318 (321)
T PTZ00325 294 YEEELLEAAVPDLKKNIEKGLEFAR 318 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988875
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=436.35 Aligned_cols=295 Identities=24% Similarity=0.375 Sum_probs=256.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADiVI 177 (442)
|+|||| |.||+.+++.|+..++. + +.|+ |++++++++.++|+.|.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~L~----Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VVLL----DIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EEEE----eCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999998875 3 6664 3345678899999998753222234443 35689999999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHHH
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~~ 256 (442)
+++|.|++||++|.+++..|.+++++++++|++++ |++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 99999999999999999999999999999999996 99999999999999999999998 5654 999999999999999
Q ss_pred HHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhc--CCCch
Q 013466 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKW--GRSSA 334 (442)
Q Consensus 257 ~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~k--G~ss~ 334 (442)
++||+++++++++|++ +|+|+||++++|+||+++|+|.|+.+++.+ ++++++.++++.++++|++.| |+++|
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~-----~~~~~~~~~v~~~~~~ii~~k~~g~t~~ 223 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITK-----EEIDEIVERTRNGGAEIVNLLKTGSAYY 223 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcCh-----HHHHHHHHHHHHHHHHHHhhcCCCchhH
Confidence 9999999999999996 899999999999999999999999988643 346778888888999999966 66665
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+.|.++++.+.+++ .|++.++|+|++++| +||++ ++|||+||++|++|+++++ ++.|+++|+++|++|++.|++
T Consensus 224 -~~a~~~~~i~~ail--~~~~~i~~~s~~~~g-~yg~~-~~~~s~P~~ig~~G~~~~~-~l~l~~~E~~~l~~s~~~l~~ 297 (300)
T cd01339 224 -APAAAIAEMVEAIL--KDKKRVLPCSAYLEG-EYGIK-DIFVGVPVVLGKNGVEKII-ELDLTDEEKEAFDKSVESVKE 297 (300)
T ss_pred -HHHHHHHHHHHHHH--cCCCcEEEEEEEecc-ccCCC-CeEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence 35666666666666 478999999999999 79995 9999999999999999999 699999999999999999987
Q ss_pred HH
Q 013466 415 EK 416 (442)
Q Consensus 415 ~~ 416 (442)
..
T Consensus 298 ~~ 299 (300)
T cd01339 298 LI 299 (300)
T ss_pred Hh
Confidence 53
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=432.62 Aligned_cols=298 Identities=21% Similarity=0.241 Sum_probs=251.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc-ccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-YELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~-~eal~dA 173 (442)
|||+||||+|+||+++++.|.. .+... ++.| + |++ +..+++++|++|.. ....++.. .++ +++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~---el~L--~--d~~-~~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS---ELSL--Y--DIA-PVTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc---EEEE--E--ecC-CCCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999866 44433 2555 3 333 23678999999853 11233321 233 8999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH----HHCCCCCc-ceeeccc
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~----k~s~~~p~-kvig~gT 248 (442)
|+||+++|.+++||++|.+++..|++++++++++|++++ |+++++++|||+|+||++++ +.+ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 999999999999999999999999999999999999995 99999999999999999987 877 5765 8999986
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCC-CcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~-t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~ 327 (442)
||++|++++||+++|+++++|+. +||||||+ +|||+||++ +|.|+.+ +++.++.++++++|++|++
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~~-~v~GeHg~~s~~p~~S~~--~g~~l~~---------~~~~~i~~~v~~~g~~ii~ 215 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQV--PGVSFTE---------QEVADLTKRIQNAGTEVVE 215 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheEE-EEEEecCCCceecccccc--CCccCCH---------HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999995 99999975 999999999 8888732 3467788888889999999
Q ss_pred hc---CCCchHHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 328 KW---GRSSAASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 328 ~k---G~ss~~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
.| |.+ ++++|.++++.+.+|+.+ .|+++++|++ +++| + |. +|+|||+||++|++|++++++.++|+++|++
T Consensus 216 ~k~~~g~t-~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~-~-g~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 290 (312)
T PRK05086 216 AKAGGGSA-TLSMGQAAARFGLSLVRALQGEQGVVECA-YVEG-D-GK-YARFFAQPVLLGKNGVEERLPIGTLSAFEQN 290 (312)
T ss_pred cccCCCCc-hhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEec-c-CC-cceEEEEEEEEcCCeeEEEcCCCCCCHHHHH
Confidence 77 444 456888888888888865 4588899976 8888 4 75 7899999999999999999953399999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013466 404 RIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 404 ~L~~sa~~l~~~~~~~~~~~~ 424 (442)
+|++|++.|+++++.+..|.+
T Consensus 291 ~l~~s~~~i~~~~~~g~~~~~ 311 (312)
T PRK05086 291 ALEGMLDTLKKDIALGEEFVN 311 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988864
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=423.26 Aligned_cols=293 Identities=23% Similarity=0.266 Sum_probs=246.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---ccccC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFE 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal~ 171 (442)
.+.||+||||+|+||+++++.|+.++++++ +.| +|+ ++ ++|+++||+|+... ..+...+++ |++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~e---l~L--~Di--~~--~~g~a~Dl~~~~~~--~~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSE---LHL--YDI--AN--TPGVAADVSHINTP--AQVRGFLGDDQLGDALK 85 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCE---EEE--Eec--CC--CCeeEchhhhCCcC--ceEEEEeCCCCHHHHcC
Confidence 357999999889999999999999999864 555 433 33 78999999999742 133322234 89999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh----HHHHHHHHHCCCCCc-ceeec
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPA-KNFHA 246 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd----~lt~~~~k~s~~~p~-kvig~ 246 (442)
|||+||+++|.|++||++|.|++..|++|++++++++++++ |+++++++|||+| ++++++++.++ +|+ |+||+
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~-~p~~~viG~ 163 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGV-YDPKKLFGV 163 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCC-CCcceEEEE
Confidence 99999999999999999999999999999999999999995 9999999999999 89998988885 555 89999
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecC-CCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG-~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
++ ||++|+++++|+++|+++.+|++ +|+|||| ++|||+||++++ ..+ +..+++.++.++++++|++|
T Consensus 164 ~~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~----~~~------~~~~~~~~i~~~v~~~g~~I 231 (323)
T PLN00106 164 TT-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATP----KVS------FTDEEIEALTKRIQNGGTEV 231 (323)
T ss_pred ec-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhccee----ccc------CCHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999996 9999996 599999999964 222 23345778888899999999
Q ss_pred HHhc---CCCchHHHHHHHHHHHHHhhcCC-CCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHH
Q 013466 326 IKKW---GRSSAASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYL 401 (442)
Q Consensus 326 i~~k---G~ss~~s~A~~i~~aI~~~l~~~-d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E 401 (442)
++.| |.+. ++.|.++++++++|+.+. +++.++|++ +.+| +| .+++|||+||+||++|++++++.++|+++|
T Consensus 232 i~~k~~kg~t~-~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~-~~--~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E 306 (323)
T PLN00106 232 VEAKAGAGSAT-LSMAYAAARFADACLRGLNGEADVVECS-YVQS-EV--TELPFFASKVRLGRNGVEEVLGLGPLSEYE 306 (323)
T ss_pred HhCccCCCCch-HHHHHHHHHHHHHHHhccCCCceEEEEE-EECc-cc--CCceEEEEEEEEcCCeeEEEcCCCCCCHHH
Confidence 9964 5544 568888888888888532 377899999 7777 55 234999999999999999999433999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013466 402 RKRIAKTEQELLAEKK 417 (442)
Q Consensus 402 ~~~L~~sa~~l~~~~~ 417 (442)
+++|++|++.|+++++
T Consensus 307 ~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 307 QKGLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998654
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=397.89 Aligned_cols=258 Identities=34% Similarity=0.512 Sum_probs=226.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcC--CCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCCcE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGE--VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~--l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (442)
|+||||+|.+|+++++.|+..+ ... +|.| + |++++++++.++||+|..... ..+++.+++.|++++|||+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~---el~L--~--D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDi 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAI---ELVL--Y--DIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcce---EEEE--E--eCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCE
Confidence 6899977999999999999988 432 2545 4 445588999999999997544 3456665556999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|++||++|.+++.+|++++++++++|+++| |++|+|++|||+|.+|+++++++ ++|+ |+||+|| ||++|
T Consensus 74 Vv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r 150 (263)
T cd00650 74 VIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIR 150 (263)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHH
Confidence 9999999999999999999999999999999999996 99999999999999999999999 5654 8999999 99999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
+++++|+++++++++|+ .+|||+||++++|+||+++ +
T Consensus 151 ~~~~la~~l~v~~~~v~-~~v~G~hg~~~~~~~s~~~------------------------------------------~ 187 (263)
T cd00650 151 FRRILAEKLGVDPDDVK-VYILGEHGGSQVPDWSTVR------------------------------------------I 187 (263)
T ss_pred HHHHHHHHhCCCccceE-EEEEEcCCCceEeccccch------------------------------------------H
Confidence 99999999999999999 5999999999999999875 1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+..+..++++ |+ +|++.++|++++++| +||+|+|++||+||++|++|++++++ ++|+++|+++|+++++.++.
T Consensus 188 a~~~~~ii~a---i~--~~~~~~~~v~v~~~g-~ygi~~~~~~s~P~~i~~~Gi~~~~~-~~l~~~e~~~l~~s~~~~~~ 260 (263)
T cd00650 188 ATSIADLIRS---LL--NDEGEILPVGVRNNG-QIGIPDDVVVSVPCIVGKNGVEEPIE-VGLTDFELEKLQKSADTLKK 260 (263)
T ss_pred HHHHHHHHHH---HH--cCCCEEEEEEEEeCC-ccCCcCCEEEEEEEEEeCCceEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 2334455444 44 578999999999999 79998999999999999999999994 89999999999999999987
Q ss_pred HH
Q 013466 415 EK 416 (442)
Q Consensus 415 ~~ 416 (442)
.+
T Consensus 261 ~~ 262 (263)
T cd00650 261 EL 262 (263)
T ss_pred Hh
Confidence 54
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=368.65 Aligned_cols=305 Identities=23% Similarity=0.279 Sum_probs=257.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---Cccccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---~~~eal 170 (442)
.++.||+|+||+|+||+.++.+|..++++++ +.| ||+ ..+.|++.||+|+.+. ..++.++ +.++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~---LaL--YDi----~~~~GVaaDlSHI~T~--s~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE---LAL--YDI----ANTPGVAADLSHINTN--SSVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce---eee--eec----ccCCcccccccccCCC--CceeccCChhHHHHHh
Confidence 3468999999999999999999999999875 555 443 3578999999999754 3444444 357899
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH---HHHCCCCCcceeecc
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~---~k~s~~~p~kvig~g 247 (442)
++||+|||.||.||||||+|.||+..|+-|+++++..+.+.| |++.+.++|||+|...+++ +|..|.+++|.+.+.
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~c-P~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCC-PNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhC-ccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 999999999999999999999999999999999999999986 9999999999999887775 688889998777788
Q ss_pred chhhHHHHHHHHHHHhCCCc-CcccceEEEeecC-CCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p-~~V~~~~ViG~HG-~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
|.||..|+++++++.++++| ++++ ++|+|+|. .|.+|++|+.+ |... ++.+++++++.++|..|.|+
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~------~~~~~~~~Lt~RiQ~gGtEV 242 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFR------FTDDEIEALTHRIQNGGTEV 242 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----Cccc------CCHHHHHHHHHHHHhCCceE
Confidence 99999999999999999999 5577 79999998 89999999986 4433 56778999999999999999
Q ss_pred HHhc-CCCch-HHHHHHHHHHHHHhhcCC-CCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHH
Q 013466 326 IKKW-GRSSA-ASTAVSIVDAMKSLVTPT-PEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 402 (442)
Q Consensus 326 i~~k-G~ss~-~s~A~~i~~aI~~~l~~~-d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~ 402 (442)
++.| |..|+ +|+|++-+++..+++.+. .+..++.|+ |+....+++ .||+.|+++|++|++++....+|+++|+
T Consensus 243 V~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~eca-fV~s~~~~~---~fFaspv~Lg~~Gv~~v~~l~~lsd~E~ 318 (345)
T KOG1494|consen 243 VKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECA-FVASPVTEL---PFFATPVTLGKKGVEEVLGLGKLSDYEE 318 (345)
T ss_pred EEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEe-EEeccccCc---cceeceEEecCCceeeecCCCccCHHHH
Confidence 9854 66666 677776666665555542 345677776 444424655 5999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 013466 403 KRIAKTEQELLAEKKCVAHLTGE 425 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~~~~ 425 (442)
+.|+++..+|++.++.+..|...
T Consensus 319 ~~l~~~~~eLk~sI~KGv~F~~~ 341 (345)
T KOG1494|consen 319 KALEAAKPELKKSIEKGVTFVKS 341 (345)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhh
Confidence 99999999999999999998764
|
|
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=274.25 Aligned_cols=171 Identities=29% Similarity=0.425 Sum_probs=156.3
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhh-ccCChHHHHHHHHHHhhhhHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-HKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~-~~~~~~e~~~~~~~v~~~g~eii 326 (442)
|+||++||+++||+++|++|++|+ +|||||||+++||+||+++|+|+|+.++.+. ..+..++..++.++++.++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~-~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVN-AYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEE-EEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceE-EEEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 789999999999999999999999 5999999999999999999999999888765 45677788899999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCc-eEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAED-IVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~d-v~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+.||+++++++|.++++.+.+|+ .|.+.++|+|++++| +||++++ +|||+||++|++|+++++++++|+++|+++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail--~~~~~i~~~sv~~~g-~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l 156 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAIL--KDERRILPVSVYLDG-EYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKL 156 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHH--TTHTEEEEEEEEEES-GGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHh--hcccccccceecccc-ccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHH
Confidence 99955555778999999999999 467999999999999 6999766 9999999999999999995599999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013466 406 AKTEQELLAEKKCVAHL 422 (442)
Q Consensus 406 ~~sa~~l~~~~~~~~~~ 422 (442)
++|+++|+++++.+.+|
T Consensus 157 ~~sa~~l~~~i~~~~~f 173 (174)
T PF02866_consen 157 KESAKELKKEIEKGLEF 173 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999876
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=273.40 Aligned_cols=288 Identities=17% Similarity=0.170 Sum_probs=205.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC----CCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP----DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~----~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
+||+|||| ||+.++.|+..-+-.. ..+|.|+|+|.++. +....++..+.+.. ....++..++|..+|++|
T Consensus 1 ~KI~iIGg----GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGG----GSSFTPELVSGLLKTPEELPISEVTLYDIDEERL-DIILTIAKRYVEEV-GADIKFEKTMDLEDAIID 74 (425)
T ss_pred CEEEEECC----chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhCC
Confidence 69999998 5555555554332221 13566655443222 22334455444332 222467888999999999
Q ss_pred CcEEEEe---CC---------cCCCCCC--------cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH
Q 013466 173 AEWALLI---GA---------KPRGPGM--------ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (442)
Q Consensus 173 ADiVIi~---ag---------~~~kpg~--------~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~ 232 (442)
|||||.+ +| +|.|.|. -......+|++++.++++.|+++| |+||+|++|||+|++|+++
T Consensus 75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TNP~di~t~a~ 153 (425)
T cd05197 75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTNPAGEVTEAV 153 (425)
T ss_pred CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCChHHHHHHHH
Confidence 9999985 34 2345543 146677899999999999999996 9999999999999999999
Q ss_pred HHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhh----hcc--
Q 013466 233 LKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIK----DHK-- 305 (442)
Q Consensus 233 ~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~----~~~-- 305 (442)
++.++ ..|+||+|+. +.|+++++|+.+|+++++|+. +|+| ||| ++||.++++|+|+...+. +..
T Consensus 154 ~~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~ 224 (425)
T cd05197 154 RRYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKD 224 (425)
T ss_pred HHhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccCcc
Confidence 98752 2499999999 999999999999999999995 9999 997 999999999988874432 100
Q ss_pred -------------CCh--------------------HH-HHHHHHH----------HhhhhH---HH------------H
Q 013466 306 -------------WLE--------------------EG-FTETIQK----------VRLRGG---LL------------I 326 (442)
Q Consensus 306 -------------~~~--------------------~e-~~~~~~~----------v~~~g~---ei------------i 326 (442)
|.. ++ +.+.++. +..... +. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 304 (425)
T cd05197 225 WKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVEL 304 (425)
T ss_pred ccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhh
Confidence 000 00 0100000 000000 00 1
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..++...++..|..|+++|. +|++.++.++|.++|.+-++|+|.++++||+++++|+.++. ..+|.+..+..++
T Consensus 305 ~~r~~~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~-vg~lp~~~~~Li~ 378 (425)
T cd05197 305 IKRGGRKYSEAAIPLIRALL-----NDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIK-VGPLDRFVKGLLR 378 (425)
T ss_pred hhcCCcccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-cCCCCHHHHHHHH
Confidence 12244445788888988887 58899999999999988899999999999999999999876 5678776655544
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-32 Score=241.40 Aligned_cols=141 Identities=31% Similarity=0.461 Sum_probs=126.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+||||+|+||+++++.|+++++.++ |.| + |+++++++|+++||+|+.+....++.++.++|++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e---i~L--~--D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE---IVL--I--DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE---EEE--E--ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc---eEE--e--ccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999889999999999999998865 666 3 55667999999999999866556778888999999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceee
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig 245 (442)
|+++|.||+||++|.+++..|++|+++++++|++++ |+++++++|||+|++|++++++++..|+|+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 999999999999999999999999999999999996 99999999999999999999999644458887
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=264.04 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=205.8
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-HcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCC--CcccEEEecCcccc
Q 013466 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFP--LLREVKIGINPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~--~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~--~~~~v~i~~~~~ea 169 (442)
|+||+|||| |.+|++.++ .++ ..++.+ .+|.|+ |+++++++ +.++ +++.... ...+++.+++.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~--~evvLv----Did~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD--AEIALM----DIDPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC--CEEEEE----CCCHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 479999996 999999877 666 344433 236664 33445555 3444 4444311 12356666666899
Q ss_pred cCCCcEEEEeCCcC-CCCC--------------CcHHhH--------HHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 170 l~dADiVIi~ag~~-~kpg--------------~~r~dl--------l~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
++|||+||++++.+ ++++ ++|.+. +.+|++++++++++|+++| |+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-PDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-CCeEEEEcCChHH
Confidence 99999999998876 4555 567787 9999999999999999996 9999999999999
Q ss_pred HHHHHHHHHCCCCC-cceeecc-chhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh
Q 013466 227 TNALICLKNAPSIP-AKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD 303 (442)
Q Consensus 227 ~lt~~~~k~s~~~p-~kvig~g-T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~ 303 (442)
++|+++++ +| .|+||+| +.+|+. +.+|+.+|+++++|+. ++.| || +.|+.+.+.+|+++...+.+
T Consensus 152 ivt~~~~~----~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~ 219 (431)
T PRK15076 152 MNTWAMNR----YPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRA 219 (431)
T ss_pred HHHHHHhc----CCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHH
Confidence 99999873 33 4999999 999988 6899999999999995 8899 99 89999999888766533211
Q ss_pred ---------------------------------c--cCC----h-HHHHHHHH---HHhhhh-------HHHH-HhcCC-
Q 013466 304 ---------------------------------H--KWL----E-EGFTETIQ---KVRLRG-------GLLI-KKWGR- 331 (442)
Q Consensus 304 ---------------------------------~--~~~----~-~e~~~~~~---~v~~~g-------~eii-~~kG~- 331 (442)
+ .|. . +++..... ....+. .+.. ...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (431)
T PRK15076 220 AAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAE 299 (431)
T ss_pred HHhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCC
Confidence 0 011 0 11111100 000011 1111 22233
Q ss_pred ----CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 332 ----SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 332 ----ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..++..|..|+++|. +|++.++.++|.++|..-++|+|.++++||.++++|+.++. ..+|.+..+..++
T Consensus 300 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-~g~lP~~~~~l~~ 372 (431)
T PRK15076 300 RIEIKRSREYASTIIEAIE-----TGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTK-VGDLPPQLAALNR 372 (431)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeee-cCCCCHHHHHHHH
Confidence 224677888888877 58889999999999988899999999999999999999986 5688887777654
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=256.26 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=203.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-----CCCCCCCceEEEeccccchhhhHHH---HHHHHhcccCCCcccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-----EVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-----~l~~~~~~I~L~l~d~d~~~~~l~g---~a~DL~~~~~~~~~~v~i~~~~~e 168 (442)
+||+|||| ||+.++.|+.. ..++ ..+|.|+ |+|. +++++. .+.++.+.. ....++..+++..+
T Consensus 1 ~KI~iIGa----GS~~tp~li~~l~~~~~~l~-~~ei~L~--Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGG----GSSYTPELIEGLIRRYEELP-VTELVLV--DIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECC----chHhHHHHHHHHHhccccCC-CCEEEEe--cCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHH
Confidence 69999998 44444444433 2222 1346664 4442 455543 333333222 12236777899999
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHh--------------------HHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~d--------------------ll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
|++|||+||++.+.++.+++++.+ ...+|++++.+++++|+++| |+||+|++|||+|++
T Consensus 72 al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~~iv 150 (419)
T cd05296 72 ALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPAGIV 150 (419)
T ss_pred HhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHHHHH
Confidence 999999999987766655554443 47899999999999999996 999999999999999
Q ss_pred HHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh----
Q 013466 229 ALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---- 303 (442)
Q Consensus 229 t~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~---- 303 (442)
|+++++.+ +.|+||+|+. +.|+++++|+.+|+++++|+. +|+| || +-|+.+.+.+|+++...+.+
T Consensus 151 t~a~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~ 220 (419)
T cd05296 151 TEAVLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAA 220 (419)
T ss_pred HHHHHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhh
Confidence 99998876 4699999988 699999999999999999995 9999 99 88999998888766542211
Q ss_pred -------ccCCh--------------------HH-HHHHHHHHhhhh-------HH---------------HHHhcCCCc
Q 013466 304 -------HKWLE--------------------EG-FTETIQKVRLRG-------GL---------------LIKKWGRSS 333 (442)
Q Consensus 304 -------~~~~~--------------------~e-~~~~~~~v~~~g-------~e---------------ii~~kG~ss 333 (442)
..|.. ++ .++....-..++ .+ .+..+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~ 300 (419)
T cd05296 221 LLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAG 300 (419)
T ss_pred ccccccccchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcc
Confidence 00110 11 111010000011 01 112345555
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
|+..|..++++|. +|++.++.++|.++|..-++|+|.++++||.++++|+.++- ..+|.+..+..++
T Consensus 301 y~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-vg~lP~~~~~l~~ 367 (419)
T cd05296 301 YSEAALALISAIY-----NDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLP-VGPLPPAILGLIQ 367 (419)
T ss_pred hHHHHHHHHHHHh-----cCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-CCCCCHHHHHHHH
Confidence 6788888988887 58889999999999988899999999999999999999875 5678887776654
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=244.68 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=196.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH----HcC-CCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANHLLFKLA----AGE-VLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~----~~~-l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
|||+|||| ||+.++.|+ ... .++ ..+|+|+|+|.++. +....++..+.+.. ....++..++|..+|++
T Consensus 1 ~KI~iIGa----GS~~tp~li~~l~~~~~~l~-~~ei~L~DId~~rl-~~v~~l~~~~~~~~-g~~~~v~~Ttdr~eAl~ 73 (437)
T cd05298 1 FKIVIAGG----GSTYTPGIVKSLLDRKEDFP-LRELVLYDIDAERQ-EKVAEAVKILFKEN-YPEIKFVYTTDPEEAFT 73 (437)
T ss_pred CeEEEECC----cHHHHHHHHHHHHhCcccCC-CCEEEEECCCHHHH-HHHHHHHHHHHHhh-CCCeEEEEECCHHHHhC
Confidence 69999998 444555444 331 122 14567755443221 22344555444332 22346788899999999
Q ss_pred CCcEEEEe---CC---------cCCCCCC---c-----HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHH
Q 013466 172 DAEWALLI---GA---------KPRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (442)
Q Consensus 172 dADiVIi~---ag---------~~~kpg~---~-----r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~ 231 (442)
|||+||.+ +| +|.|+|+ + ......||++++.++++.|+++| |+||+|++|||++++|++
T Consensus 74 gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tNP~~~vt~~ 152 (437)
T cd05298 74 DADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSNPAAIVAEA 152 (437)
T ss_pred CCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHH
Confidence 99999985 34 2445554 2 35677899999999999999996 999999999999999999
Q ss_pred HHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCccccccccccc-Ccchhhhhh----hcc
Q 013466 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK----DHK 305 (442)
Q Consensus 232 ~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~-G~p~~~~i~----~~~ 305 (442)
+++..+ ..|+||.|.. ..-++..+|+.+|+++++|+. -+.| || +.|+.+.+.+ |+++...+. +..
T Consensus 153 ~~~~~~--~~kviGlC~~--~~~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~ 223 (437)
T cd05298 153 LRRLFP--NARILNICDM--PIAIMDSMAAILGLDRKDLEP-DYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENG 223 (437)
T ss_pred HHHHCC--CCCEEEECCc--HHHHHHHHHHHhCCCHHHceE-EEEeecc----hhhhhheEECCCCchHHHHHHHHhccC
Confidence 988732 2489999988 777889999999999999994 7799 99 8889999888 887664332 111
Q ss_pred CC--------------hHH-----H------------------H-HHHHHHh-----------hhhHHHH----------
Q 013466 306 WL--------------EEG-----F------------------T-ETIQKVR-----------LRGGLLI---------- 326 (442)
Q Consensus 306 ~~--------------~~e-----~------------------~-~~~~~v~-----------~~g~eii---------- 326 (442)
|. .+- + . +..++.. ....+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 303 (437)
T cd05298 224 YLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETG 303 (437)
T ss_pred CCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcC
Confidence 11 000 0 0 0001100 0000110
Q ss_pred -----HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHH
Q 013466 327 -----KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDY 400 (442)
Q Consensus 327 -----~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~ 400 (442)
+.++. .|+..+..++++|. +|++.++++||+++| .| ++|+|+++|+||+||++|+.++. ..+|.+.
T Consensus 304 ~~~~~~~~~~-~ya~~a~~ii~aI~-----~d~~~~~~vnv~n~G-~i~nL~~d~~vevP~~v~~~Gi~pi~-vg~lP~~ 375 (437)
T cd05298 304 TAEGSTFHVD-VHGEYIVDLAASIA-----YNTKERFLVIVENNG-AIPNLPDDAMVEVPAYIGSNGPEPLV-VGKIPTF 375 (437)
T ss_pred Chhhhhhhcc-chHHHHHHHHHHHH-----cCCCeEEEEEeecCC-ccCCCCCCcEEEEEEEEeCCCceecc-cCCCCHH
Confidence 01111 13555666666665 589999999999999 56 47899999999999999999986 5688887
Q ss_pred HHHHHH
Q 013466 401 LRKRIA 406 (442)
Q Consensus 401 E~~~L~ 406 (442)
....++
T Consensus 376 ~~~l~~ 381 (437)
T cd05298 376 YKGLME 381 (437)
T ss_pred HHHHHH
Confidence 777654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=243.49 Aligned_cols=286 Identities=17% Similarity=0.109 Sum_probs=211.8
Q ss_pred CEEEEEcCCCchHHHHHH--HHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC--CcccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~--~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~--~~~~v~i~~~~~eal~ 171 (442)
+||+|||| |.+|++++. .++.. .+.+ .+|.|+ |+++++++....++.+.... ...+++.+++.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g--~eV~L~----Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG--STIALM----DIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC--CEEEEE----CCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999996 999999877 56544 4333 246664 45567788888777655321 2235666777789999
Q ss_pred CCcEEEEeCCcCCCCCCcH----------------------HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r----------------------~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
|||+||++.+.+..++.++ .....+|++++.++++.+.++| |++|++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~-p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELC-PDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHC-CCCEEEEcCChHHHHH
Confidence 9999999887655555444 5677899999999999999996 9999999999999999
Q ss_pred HHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh---c-
Q 013466 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (442)
Q Consensus 230 ~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~---~- 304 (442)
+++++.++ .|+||+|+. +.|+++.+|+.+|+++++|+. +++| || +.||...+.+|+++...+.+ .
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999885 599999988 999999999999999999995 8999 99 88999998888766543321 0
Q ss_pred --------cCC-----------h---H---H------HH-HHHHHHh----h-------hh---HH-H----------HH
Q 013466 305 --------KWL-----------E---E---G------FT-ETIQKVR----L-------RG---GL-L----------IK 327 (442)
Q Consensus 305 --------~~~-----------~---~---e------~~-~~~~~v~----~-------~g---~e-i----------i~ 327 (442)
.|. . . + .. +.+.... . .. +. . ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEE 302 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchh
Confidence 010 0 0 0 00 0000000 0 00 00 0 01
Q ss_pred hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 328 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 328 ~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..+...++..|..++++|. +|++.++.++|.++|..-++|+|.++++||.++++|++++- ..+|.+..+..++
T Consensus 303 ~~~~~~~~e~a~~ii~ai~-----~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~-~g~lp~~~~~l~~ 375 (423)
T cd05297 303 LDPVKRSGEYASPIIEALV-----TGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEK-IGPLPPQLAALIR 375 (423)
T ss_pred ccccccchHHHHHHHHHHh-----cCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecc-cCCCCHHHHHHHH
Confidence 1222234677888888887 58899999999999988899999999999999999999876 5788777666554
|
linked to 3D####ucture |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=226.25 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=204.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCC----CceEEEeccccchhhhHH---HHHHHHhcccCCCcccEEEecCcc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPD----QPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~----~~I~L~l~d~d~~~~~l~---g~a~DL~~~~~~~~~~v~i~~~~~ 167 (442)
++.||+|||| ||+..+.++.+.+...+ .++.| +|+| +++++ .++..+-+.. ....++..+++..
T Consensus 2 ~~~KI~iIGg----GSt~tp~~v~g~l~~~e~l~~~el~L--~Did--~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~ 72 (442)
T COG1486 2 KKFKIVIIGG----GSTYTPKLLLGDLARTEELPVRELAL--YDID--EERLKIIAILAKKLVEEA-GAPVKVEATTDRR 72 (442)
T ss_pred CcceEEEECC----CccccHHHHHHHHhcCccCCcceEEE--EeCC--HHHHHHHHHHHHHHHHhh-CCCeEEEEecCHH
Confidence 4579999998 66666666655553321 24555 4443 34444 1222222221 2224677789999
Q ss_pred cccCCCcEEEEe---CC---------cCCCCCCc--------HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 168 ELFEDAEWALLI---GA---------KPRGPGME--------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 168 eal~dADiVIi~---ag---------~~~kpg~~--------r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
+||+|||||+.+ +| +|.|+|.- ......|+++++-+|++.|+++| |+||+|++|||+.+
T Consensus 73 eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~-P~Aw~lNytNP~~~ 151 (442)
T COG1486 73 EALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVC-PNAWMLNYTNPAAI 151 (442)
T ss_pred HHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhC-CCceEEeccChHHH
Confidence 999999999985 33 35566642 34455799999999999999997 99999999999999
Q ss_pred HHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCc-CcccceEEEe-ecCCCcccccccccccCcchhhhhhh--
Q 013466 228 NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD-- 303 (442)
Q Consensus 228 lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p-~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~-- 303 (442)
+|.++.+..+. -|+||.|.. ..-....||+.||+.+ ++++ .-+.| || +.||..++.+|.++..-+.+
T Consensus 152 vTeAv~r~~~~--~K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~-~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~ 222 (442)
T COG1486 152 VTEAVRRLYPK--IKIVGLCHG--PIGIAMELAEVLGLEPREDLR-YRVAGLNH----MVWILRVRDDGEDLYPELLEAL 222 (442)
T ss_pred HHHHHHHhCCC--CcEEeeCCc--hHHHHHHHHHHhCCCchhcee-EEEeechh----hhhhhHhhhcCccchHHHHHHH
Confidence 99999987742 299999988 7888899999999975 9999 47799 99 89999999888655432211
Q ss_pred --c--------------cCCh---------------------HHHH----HHH-------HHHhhhhHH-----------
Q 013466 304 --H--------------KWLE---------------------EGFT----ETI-------QKVRLRGGL----------- 324 (442)
Q Consensus 304 --~--------------~~~~---------------------~e~~----~~~-------~~v~~~g~e----------- 324 (442)
. .|.. .++. ... +.+.++.-+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~ 302 (442)
T COG1486 223 EEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELK 302 (442)
T ss_pred hccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhh
Confidence 0 0000 0000 000 000000000
Q ss_pred ----HHHhcCCC--chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCC
Q 013466 325 ----LIKKWGRS--SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFD 398 (442)
Q Consensus 325 ----ii~~kG~s--s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~ 398 (442)
..++++.+ .++..|..|+++|. +|++.++.++|.++|.+-++|+|.++++||+++++|++++. ...|.
T Consensus 303 ~~p~~~~~~~~~~~~~~e~a~~ii~Ai~-----~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~-~g~lP 376 (442)
T COG1486 303 EKPEELEKRIGAGKYSSEYASNIINAIE-----NNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLA-VGDLP 376 (442)
T ss_pred cCchhhhhcCCcccccHHHHHHHHHHHh-----cCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccc-cCCCC
Confidence 01233443 45778889988888 68999999999999998999999999999999999999977 79999
Q ss_pred HHHHHHHHHH
Q 013466 399 DYLRKRIAKT 408 (442)
Q Consensus 399 ~~E~~~L~~s 408 (442)
+.-+..++..
T Consensus 377 ~~~~~l~~~~ 386 (442)
T COG1486 377 EFVKGLMHTN 386 (442)
T ss_pred HHHHHHHHHH
Confidence 9888866543
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=150.98 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=110.2
Q ss_pred EEEEEcCCCchHHH--HHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 98 NIAVSGAAGMIANH--LLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 98 KI~IIGA~G~VG~~--la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
||+|||| |.+-+. +...|...+-++. .+|.|+| +| +++++ ..+..+.... ....++..++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~-~ei~L~D--id--~~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSG-SEIVLMD--ID--EERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTE-EEEEEE---SC--HHHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCC-cEEEEEc--CC--HHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999997 555444 2223444343432 3455544 33 34444 4444444333 223467889999999999
Q ss_pred CcEEEEeC---C---------cCCCCCCc----------HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH
Q 013466 173 AEWALLIG---A---------KPRGPGME----------RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (442)
Q Consensus 173 ADiVIi~a---g---------~~~kpg~~----------r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~ 230 (442)
||+||.+. | .|.|.|.. ......|+++++.++++.|+++| |+||+||+|||+..+|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~-PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELC-PDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEeccChHHHHHH
Confidence 99999963 2 46777653 35677899999999999999997 99999999999999999
Q ss_pred HHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCC
Q 013466 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (442)
Q Consensus 231 ~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv 265 (442)
++.+..+.. |++|.|.. ..-+...+|+.||.
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999987544 89999988 67788889998873
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=80.90 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=63.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHH-Hhcc----cC------CCcccEEEe
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAME-LEDS----LF------PLLREVKIG 163 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~D-L~~~----~~------~~~~~v~i~ 163 (442)
||+|||| |.+|..++..++..|. ++.|++. +.+.++ ....+ +... .. ....+++++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~d~----~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTLYDR----SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEEE-S----SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEEEEC----ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999996 9999999999999985 4777543 333322 12111 1100 00 012367776
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++ ++++.|||+||-+. .++.++-+++...|.+++.|++++ .||..
T Consensus 71 ~d-l~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTS 115 (180)
T PF02737_consen 71 TD-LEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTS 115 (180)
T ss_dssp SS-GGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--S
T ss_pred cC-HHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCC
Confidence 54 55666999999873 235788889999999998788887 67654
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-06 Score=83.55 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=67.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH----HhcccC-C---------Cccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME----LEDSLF-P---------LLRE 159 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D----L~~~~~-~---------~~~~ 159 (442)
..+.||+|||| |.+|..+|..++..|. ++.|++. +.+.++..... +..... . ...+
T Consensus 3 ~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~d~----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 72 (286)
T PRK07819 3 DAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLVFET----TEELATAGRNRIEKSLERAVSRGKLTERERDAALAR 72 (286)
T ss_pred CCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEEEEC----CHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC
Confidence 34569999995 9999999999999885 3667543 33333321111 110000 0 1124
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh-CCCeEEEEeCCchh
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCN 226 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a-~p~a~vivvtNPvd 226 (442)
++.+ ++++++++||+||-+. .++.++-+++-..+.++| .|++++ +||...
T Consensus 73 l~~~-~~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~ 123 (286)
T PRK07819 73 LRFT-TDLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSS 123 (286)
T ss_pred eEee-CCHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 5554 4568899999999883 335677777777888886 577777 666543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.1e-06 Score=82.94 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH-------HHhcc-cC--CCcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDS-LF--PLLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~-------DL~~~-~~--~~~~~v~i~~~ 165 (442)
..||+|||| |.+|+.++..++..|. ++.+++. +.+.++.... .+... .. ....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l~D~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVAWDP----APGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEEeC----CHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 468999995 9999999999999885 3666543 3232221111 11100 00 01124566566
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~ 232 (442)
..+++++||+|+-+.- +|.++-+++-..+.+++.|++ |+.||.......-+
T Consensus 77 l~~av~~aDlViEavp--------------E~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~l 127 (321)
T PRK07066 77 IEACVADADFIQESAP--------------EREALKLELHERISRAAKPDA--IIASSTSGLLPTDF 127 (321)
T ss_pred HHHHhcCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHH
Confidence 6688999999998732 345667777788888886777 55888875543333
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=80.02 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=88.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH-hccc-----CC-----CcccEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-EDSL-----FP-----LLREVKIGI 164 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL-~~~~-----~~-----~~~~v~i~~ 164 (442)
.+||+|||| |.+|..+|+.++..|+ ++.|.+...+. .++..+..... .... .. .+..++. +
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l~D~~~~~-~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~-~ 74 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVLKDISPEA-LERALAYIEKNLEKLVEKGKLTEEEADAALARITP-T 74 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc-c
Confidence 469999996 9999999999999664 37775433111 11111111111 1100 00 0112232 4
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCccee
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvi 244 (442)
.++++++|||+||-+ .-+|.++-+++-..+.++++|++++ .||...+.-..+.+.. ..|.|++
T Consensus 75 ~~~~~l~~~DlVIEA--------------v~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~-~rper~i 137 (307)
T COG1250 75 TDLAALKDADLVIEA--------------VVEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEAL-KRPERFI 137 (307)
T ss_pred CchhHhccCCEEEEe--------------ccccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHh-CCchhEE
Confidence 467799999999987 3456788899999999998889988 8998754332232333 2333443
Q ss_pred e------------------ccchhhHHHHHHHHHHHhCCC
Q 013466 245 H------------------ALTRLDENRAKCQLALKAGVF 266 (442)
Q Consensus 245 g------------------~gT~LDs~R~~~~lA~~lgv~ 266 (442)
| --|.-++...-..+++++|-.
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3 344446666666777887733
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=78.23 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH---Hhcc---cCCC---------cccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDS---LFPL---------LREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D---L~~~---~~~~---------~~~v 160 (442)
+.||+|||+ |.+|..++..|+..|. ++.+++. +.+.++..... +.+. .... ..++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l~d~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTIYDI----SDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEEEeC----CHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 469999995 9999999999998874 3666543 33333221111 1100 0000 1245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+++..+++++||+||.+.. .+.++.+++.+.+.+++.++++| ++|..
T Consensus 73 ~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntS 121 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSS 121 (287)
T ss_pred EEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcc
Confidence 666665678999999999833 23556677777777776566655 44543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=79.47 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH-------HHHHHhccc-C------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-------VAMELEDSL-F------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g-------~a~DL~~~~-~------~~~~~v~ 161 (442)
+.||+|||+ |.+|..++..++..|. ++.++ |++.+.++. ...++.+.. . ....+++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~~----d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~ 72 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVMV----DISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 468999995 9999999999999885 36664 333344321 101111100 0 0012455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
.++ +++++++||+||++.- .+..+.+++...+.+++++++++ +||-..
T Consensus 73 ~~~-~~~~~~~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~il--~s~ts~ 120 (282)
T PRK05808 73 GTT-DLDDLKDADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAIL--ATNTSS 120 (282)
T ss_pred EeC-CHHHhccCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 544 5678999999999832 23455567777778877667776 555544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=71.48 Aligned_cols=99 Identities=23% Similarity=0.258 Sum_probs=62.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-C---CcccEEEecCcccccCCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P---LLREVKIGINPYELFEDA 173 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~---~~~~v~i~~~~~eal~dA 173 (442)
||+|+|| |+.|.++|..|...+. ++.|+ .++.+.++.+-.+-....+ + +..++.+++|..+++++|
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l~----~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTLW----GRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEEE----TSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEEE----eccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcc
Confidence 8999996 9999999999999883 36664 3333444433222111110 1 124678888888999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|+||++.- .+.++++.++|..+..++..+++++
T Consensus 71 d~IiiavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 71 DIIIIAVP----------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cEEEeccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 99998732 2446777777777754455665544
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.9e-05 Score=72.55 Aligned_cols=103 Identities=21% Similarity=0.124 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~dAD 174 (442)
|||+|||++|++|.+++..|+..+. ++.+. +++.++++..+.++.+... ....++.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v~----~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIIIG----SRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEEE----EcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998772 35553 5556666666555433210 11111222 35678899999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+||++.. .+.+.++.+.+.... .+.+||-++||.+
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~l-~~~vvI~~~ngi~ 105 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDEL-SGKLVISPVVPLA 105 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHhc-cCCEEEEeccCce
Confidence 9999844 123344444454432 3468889999975
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.3e-05 Score=75.36 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc-----------ccC------CCcc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED-----------SLF------PLLR 158 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~-----------~~~------~~~~ 158 (442)
..||+|||| |.+|..++..|+..|. +|.++ |++.+.++.....+.. ... ....
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l~----d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTIV----DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 468999995 9999999999999885 36664 3344444321111110 000 0011
Q ss_pred cEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++..++ +++++++||+||.+.. .+.++.+++.+.+.+++.++++++..|.
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 234443 4478999999999843 1245566667777877767777654444
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.9e-05 Score=76.18 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=61.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc---C------CCcccEEEec
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIGI 164 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~---~------~~~~~v~i~~ 164 (442)
+++.||+|||+ |.+|..++..|+..|. ++.++ |++.+.++.....+.+.. . ....+++.++
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVLI----DVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA 71 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence 34579999995 9999999999998774 25554 334444443322111100 0 0112345555
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+..+++++||+||++.-. ..++..++...+..++.++++|+..++
T Consensus 72 ~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~ii~s~ts 116 (311)
T PRK06130 72 GLAAAVSGADLVIEAVPE--------------KLELKRDVFARLDGLCDPDTIFATNTS 116 (311)
T ss_pred CHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 555679999999998321 123444555556665545665544443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.1e-05 Score=85.44 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH---HHH----HHh-cccC------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAM----ELE-DSLF------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g---~a~----DL~-~~~~------~~~~~v~ 161 (442)
..||+|||| |.+|..++..++..|+ ++.|++.+ .+.++. ... .+. .... ....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~d~~----~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIMKDIN----QKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 468999996 9999999999999886 47775443 333221 111 111 0000 0113455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
.+ .++++++|||+||-+ .-++.++-+++-..+.++++|++++ .||....
T Consensus 383 ~~-~~~~~~~~aDlViEa--------------v~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl 431 (715)
T PRK11730 383 PT-LDYAGFERVDVVVEA--------------VVENPKVKAAVLAEVEQKVREDTIL--ASNTSTI 431 (715)
T ss_pred Ee-CCHHHhcCCCEEEec--------------ccCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence 55 467899999999987 2346788889999999998778777 8887653
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=64.78 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=63.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADiV 176 (442)
||+|||+ |++|.+++..|+..+. .. .+|.+. .+++.+++...+.++. +.... +..+++++||+|
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~-~~-~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGI-KP-HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS--G-GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-Cc-eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 8999995 9999999999999986 22 234432 2667777765554432 22323 578899999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|++.-. +.+.++.+.+... .++..+|-++||
T Consensus 66 ilav~p----------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVKP----------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-G----------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEECH----------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 998431 3355566666333 378888888876
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.2e-05 Score=84.50 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHHHhccc------C-----CCcccE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSL------F-----PLLREV 160 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~DL~~~~------~-----~~~~~v 160 (442)
...||+|||| |.+|..++..++..|+ ++.|++.+ .+.++ ..+.++.+.. . ....++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~d~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PIVMKDIN----QHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC-----eEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 3468999996 9999999999999886 47775443 33222 1111111000 0 011245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+.++ ++++++|||+||-+. -++.++-+++-..+.++|+|++++ .||...
T Consensus 382 ~~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~ 430 (714)
T TIGR02437 382 TPTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTST 430 (714)
T ss_pred EEeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 5554 578899999999883 346788889999999998788877 888765
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=69.07 Aligned_cols=96 Identities=24% Similarity=0.252 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
||+|+|+| +|++|++++..++..+. ++.+- ..+.++.+++.+..+.-. + ......++.+.||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~ig---s~r~~~~~~a~a~~l~~~-------i-~~~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVIIG---SSRGPKALAAAAAALGPL-------I-TGGSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEEe---cCCChhHHHHHHHhhccc-------c-ccCChHHHHhcCCE
Confidence 67999999 59999999999999884 35542 234455666665555421 2 23457899999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++.- + +-+.++.+.+...- .+-+||-.|||.
T Consensus 64 VvLAVP------------~----~a~~~v~~~l~~~~-~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLAVP------------F----EAIPDVLAELRDAL-GGKIVIDATNPI 96 (211)
T ss_pred EEEecc------------H----HHHHhHHHHHHHHh-CCeEEEecCCCc
Confidence 999844 1 33444455555432 367899999994
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=75.76 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh--------cccCC------CcccE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSLFP------LLREV 160 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~--------~~~~~------~~~~v 160 (442)
+..||+|||+ |.+|..++..|+..|. ++.++ |++.+.++.....+. ....+ ...++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l~----d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLLN----DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3569999995 9999999999999875 36664 344444443221111 01000 00234
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
+.+ ++++++++||+||.+... +.++.+.+.+.|.+++.++++++
T Consensus 73 ~~~-~~~~~~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 73 STA-TDLEDLADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred Eee-CCHHHhcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEEE
Confidence 554 456789999999998321 12344455556677666677664
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.7e-05 Score=84.45 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH---HHHHHhccc------CC-----CcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL------FP-----LLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g---~a~DL~~~~------~~-----~~~~v~ 161 (442)
..||+|||| |.+|..++..++..|+ ++.|++. +.+.++. ...+..+.. .+ ...+++
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l~d~----~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVLKDA----TPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCCC-----cEEEecC----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 468999996 9999999999999886 4777543 3333221 111111110 00 113455
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA 241 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~ 241 (442)
.+ .++++++|||+||-+ .-+|.++-+++-..+.++++|++++ .||....-...+.... ..|.
T Consensus 405 ~~-~~~~~~~~aDlViEA--------------v~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~-~~p~ 466 (737)
T TIGR02441 405 PT-LDYSGFKNADMVIEA--------------VFEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIAAVS-SRPE 466 (737)
T ss_pred Ee-CCHHHhccCCeehhh--------------ccccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhc-CCcc
Confidence 54 467899999999987 3346788889999999998788877 7887653322222222 2233
Q ss_pred ceee------------------ccchhhHHHHHHHHHHHhCCC
Q 013466 242 KNFH------------------ALTRLDENRAKCQLALKAGVF 266 (442)
Q Consensus 242 kvig------------------~gT~LDs~R~~~~lA~~lgv~ 266 (442)
|++| ..|.-++.-.-..+++.+|-.
T Consensus 467 r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~ 509 (737)
T TIGR02441 467 KVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKV 509 (737)
T ss_pred ceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCe
Confidence 4433 345555544455567777743
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.6e-05 Score=84.30 Aligned_cols=107 Identities=11% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc------C-----CCcccEEEe
Q 013466 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL------F-----PLLREVKIG 163 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~------~-----~~~~~v~i~ 163 (442)
..||+|||| |.+|..++..++ ..|+ ++.|++.+.+. .++......++.+.. . ....+++++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRIKDINPQG-INHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT 381 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe
Confidence 468999996 999999999998 7675 47775443221 111111111111100 0 011356665
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+ ++++++|||+||-+ .-+|.++-+++-..+.++++|++++ .||...
T Consensus 382 ~-~~~~~~~aDlViEa--------------v~E~~~~K~~v~~~le~~~~~~~il--asnTS~ 427 (708)
T PRK11154 382 T-DYRGFKHADVVIEA--------------VFEDLALKQQMVAEVEQNCAPHTIF--ASNTSS 427 (708)
T ss_pred C-ChHHhccCCEEeec--------------ccccHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence 4 56899999999987 3346788999999999998888887 788765
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.5e-05 Score=82.69 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHH---HH-HHHhccc-----CC-----CcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEG---VA-MELEDSL-----FP-----LLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g---~a-~DL~~~~-----~~-----~~~~v 160 (442)
..||+|||| |.+|..++..++. .|+ ++.|++.+ .+.++. .+ ..|.... .+ ...++
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l~d~~----~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI-----PVRIKDIN----PQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 468999996 9999999999884 675 47775443 232221 11 1111110 00 11345
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+.++ ++++++|||+||-+. -++.++-+++-..|.++++|++++ .||...
T Consensus 374 ~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~ 422 (699)
T TIGR02440 374 TGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSS 422 (699)
T ss_pred EEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCC
Confidence 5554 568999999999872 345788889999999998778776 788765
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.4e-05 Score=74.88 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=59.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH-------HHHHhccc-C-C-----Cccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-------AMELEDSL-F-P-----LLRE 159 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~-------a~DL~~~~-~-~-----~~~~ 159 (442)
.++.||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.. ..++.... . . ....
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~~----d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWLL----DSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 34578999995 9999999999999874 36564 3343433211 11121110 0 0 0012
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
... +++++++++||+||.+.- .+.++...+...+.+++.++++|+
T Consensus 72 ~~~-~~~~~~~~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 72 IRC-TTNLEELRDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred eEe-eCCHHHhCCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcEEE
Confidence 333 345688999999999832 234555555555666665677653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=72.88 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc----cc----C------CCcccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL----F------PLLREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~----~~----~------~~~~~v~i 162 (442)
.||+|||+ |.+|..++..|+..|. ++.+++ ++.+.++.....+.. .. . ....+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~~d----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTLVD----IKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEEEe----CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998874 366643 344444322211110 00 0 00123556
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEE
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~v 218 (442)
+.+..+++++||+||.+... +..+.+.+...+.+++.+++++
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~il 113 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPE--------------KLELKKAVFETADAHAPAECYI 113 (288)
T ss_pred eCcHHHhhcCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCcEE
Confidence 66666899999999988431 2344444555566666566655
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=78.94 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=61.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH---HHHHhcc-c-CC---------Cccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDS-L-FP---------LLRE 159 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~---a~DL~~~-~-~~---------~~~~ 159 (442)
.+..||+|||| |.+|..++..++..|+ ++.++ |++.+.++.. ..++.+. . .. ...+
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l~----D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLLY----DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 34578999995 9999999999999885 36664 3344444321 1111100 0 00 1123
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEE
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~v 218 (442)
++.++ +++++++||+||.+.- ++.++-+.+-..+.+++.+++++
T Consensus 75 i~~~~-~~~~~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~ail 118 (507)
T PRK08268 75 LRPVE-ALADLADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPDCIL 118 (507)
T ss_pred eEEeC-CHHHhCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 55544 5678999999998732 23455555556678877677776
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=78.45 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHH----HHHhccc-CC---------CcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA----MELEDSL-FP---------LLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a----~DL~~~~-~~---------~~~~v~ 161 (442)
..||+|||+ |.+|..++..++..|. ++.++ |++.+.++... ..+.... .. ...+++
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l~----d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 74 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGH-----QVLLY----DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLI 74 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccE
Confidence 468999995 9999999999999885 36664 44444443211 1111000 00 112355
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
.++ +++++++||+||.+.- ++.++-+.+-..+.+++.+++++ .||...
T Consensus 75 ~~~-~~~~l~~aDlVIEav~--------------E~~~vK~~vf~~l~~~~~~~~Il--asnTSt 122 (503)
T TIGR02279 75 PVT-DLHALADAGLVIEAIV--------------ENLEVKKALFAQLEELCPADTII--ASNTSS 122 (503)
T ss_pred EeC-CHHHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCC
Confidence 544 5688999999998732 23455666666688887666664 666554
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.7e-05 Score=72.26 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=76.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC------C---------Ccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF------P---------LLR 158 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~------~---------~~~ 158 (442)
.++..|+|||| |.+|+.+|+..+..|+ ++.|++.+.|.-....+++...+.+... + .+.
T Consensus 9 ~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ 82 (298)
T KOG2304|consen 9 AEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLD 82 (298)
T ss_pred ccccceEEEcc-cccchhHHHHHHhcCC-----ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHH
Confidence 44678999996 9999999999999987 4677543322222222333333322210 0 012
Q ss_pred cEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 159 ~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
.+..+++-..++.|||+||-+ +-+|++|-+++-+.|.+.|.+++++ .||...
T Consensus 83 ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSS 134 (298)
T KOG2304|consen 83 RIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSS 134 (298)
T ss_pred HHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccc
Confidence 445667778899999998866 6789999999999999998677776 788764
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=65.51 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=58.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--------------cccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------------~~~v~i 162 (442)
|||+||| .|.||..+|..|+..|. .+.- + |.++++.+.+ .....++ ..+.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g--~--D~~~~~v~~l----~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG--V--DIDEEKVEAL----NNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE--E---S-HHHHHHH----HTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE--E--eCChHHHHHH----hhccccccccchhhhhccccccccchh
Confidence 7999999 59999999999999985 2333 3 4444544433 2222121 135677
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++..+++++||++|++.+.|.+++.+ .| ...+.+.++.|.++..++.+|++=|
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~~-~D-----ls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDGS-PD-----LSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTTS-BE-----THHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhhhhhhhccceEEEecCCCccccCC-cc-----HHHHHHHHHHHHHHHhhcceEEEcc
Confidence 777778899999999999888755321 11 1234444444444444445544433
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00046 Score=73.92 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH-------h---cccCCCcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-------E---DSLFPLLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL-------~---~~~~~~~~~v~i~~~ 165 (442)
.+||+|||+ |.+|..++..|+..|. ++.++ |++.+.++.....+ . ........++++..+
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v~----D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAVF----DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 358999995 9999999999999885 36664 34444443321111 0 000000123556566
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
..+++++||+|+.+.. .+.++.+++...+.+++.++++ +.+|...
T Consensus 74 ~~ea~~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~i--I~SsTsg 118 (495)
T PRK07531 74 LAEAVAGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDAL--IGSSTSG 118 (495)
T ss_pred HHHHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcE--EEEcCCC
Confidence 6678999999998732 1234444455556666645554 4555554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00059 Score=68.39 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~eal~ 171 (442)
|+||+|||+ |.+|..++..|+..+. ++.++ +++.+.++....+..+... .....+....+..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTLW----ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 25553 4444555544332111110 00113444455556888
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
++|+||++... +.+.++.+.+..+..++.+++.++|-++
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999998441 1234444455554456778888887654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00057 Score=69.70 Aligned_cols=108 Identities=14% Similarity=0.039 Sum_probs=69.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-C----CcccEEEecCcc
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P----LLREVKIGINPY 167 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~----~~~~v~i~~~~~ 167 (442)
.++++||+|||| |.+|..++..|...+. +.++. ++++..+.+..+-....+ + +..++..+++..
T Consensus 4 ~~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l~~----~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 4 AKREPKVVVLGG-GSWGTTVASICARRGP------TLQWV----RSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHHCCC------EEEEe----CCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence 356789999995 9999999999998762 44532 233433333221100110 1 112456666667
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
++++++|+||++.- .+.++++.+.+..+.+++..++.++|-.+.
T Consensus 73 ~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 73 EAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 78999999999833 244666666666655567788899987653
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00088 Score=66.00 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=63.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+.+.. ..+.+ .+++.++++....++ + .+....+..+.++++|+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~~~~~-----~---g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHIKERY-----P---GIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHHHHHc-----C---CeEEECCHHHHHHhCCEE
Confidence 48999995 9999999999998875422 23444 255555554332211 1 244555566778999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|++.- .+.+.++.+.+..+..++.+|+.++|.+.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 99842 12244444555544345678899999764
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00072 Score=61.48 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+||| .|.+|+.++..|+..+. ++..+ |++.++++.... . ......+..+.+++||+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~~----d~~~~~~~~~~~----~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTVY----DRSPEKAEALAE----A------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEEE----ESSHHHHHHHHH----T------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEee----ccchhhhhhhHH----h------hhhhhhhhhhHhhcccc
Confidence 68999999 59999999999999885 35443 455555553322 1 14555667889999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHH--HHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKA--LNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~--I~~~a~p~a~vivvt 222 (442)
||++.. +.+.++++... +.....++.++|..+
T Consensus 61 vi~~v~---------------~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 61 VILCVP---------------DDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp EEE-SS---------------SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred eEeecc---------------cchhhhhhhhhhHHhhccccceEEEecC
Confidence 998733 23445555554 444333455555544
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=66.50 Aligned_cols=104 Identities=14% Similarity=0.267 Sum_probs=65.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCccccc-C
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELF-E 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~eal-~ 171 (442)
|||+|||| |.+|..++..|...+. +|.|+ +++.+.++.+..+-.+..+ .+..++..+++..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l~----~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNLW----GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 58999996 9999999999998873 36663 4444444444332111110 1112456666666666 5
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh-hhCCCeEEEEeCCchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPCN 226 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~-~a~p~a~vivvtNPvd 226 (442)
++|+||++.- ..-+.++.+.+.. +..++..++.++|=.+
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 8999999843 2345555555554 4346777888888763
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=66.69 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=65.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCC---CceEEEeccccc-hhhhHHHHHHHHhcccC----CCcccEEEecCcccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPD---QPIALKLLGSER-SLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~---~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~ea 169 (442)
||+|||| |+.|.++|..|...+...++ .+|.|+..+.++ +++..+.+-.+.+...+ .+..+++.+++..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6999995 99999999999987732221 357776543221 12222222222111111 112457777777889
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++||+||++.- .+.++++++.+..+-.++..++.++
T Consensus 80 l~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 80 AKGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred HhcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 999999998732 3566777777776543455565555
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=65.84 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC------cccEEEecCcccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL------LREVKIGINPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~------~~~v~i~~~~~ea 169 (442)
++||+|+|| |.=|.+++..|+..+. ++.|...+ ++....+-.+ |....+ ..++..++|..++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~lw~r~----~~~~~~i~~~--~~N~~yLp~i~lp~~l~at~Dl~~a 68 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRLWGRD----EEIVAEINET--RENPKYLPGILLPPNLKATTDLAEA 68 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEEEecC----HHHHHHHHhc--CcCccccCCccCCcccccccCHHHH
Confidence 479999995 9999999999999883 47776443 2222222221 122112 2356778888999
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC-----CchhHHHHHHHHHCC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-----NPCNTNALICLKNAP 237 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt-----NPvd~lt~~~~k~s~ 237 (442)
+++||+||++.- .+.+++++++++.+..++.+++.++ +....+..++.+..+
T Consensus 69 ~~~ad~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 69 LDGADIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred HhcCCEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 999999999733 3667777777765545677887776 344566677666553
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0024 Score=64.08 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHH-------HHHhcccC-------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-------MELEDSLF-------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a-------~DL~~~~~-------~~~~~v~ 161 (442)
++||+|||+ |.+|..++..|+..|. +|.++ |++.+.++... ..+.+... ....+++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~-----~V~v~----d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH-----EVRLW----DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC-----eeEEE----eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 458999995 9999999999999875 36664 33433333211 01111100 0112356
Q ss_pred EecCcccccCCCcEEEEeC
Q 013466 162 IGINPYELFEDAEWALLIG 180 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~a 180 (442)
.+.+..+++++||+|+.+.
T Consensus 72 ~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 72 VTDSLADAVADADYVQESA 90 (308)
T ss_pred EECcHHHhhCCCCEEEECC
Confidence 6666567899999999874
|
|
| >PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=62.37 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 337 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 337 ~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
.|..++++|. +|++.++.++|.++|.+-++|+|.++.+||+|+++|+.++. ...|.+..+..++..
T Consensus 138 ~a~~~i~~i~-----~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~-~g~lP~~~~~li~~~ 203 (232)
T PF11975_consen 138 YAEAAIEAIY-----NDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVA-VGPLPPAIAGLIQQV 203 (232)
T ss_dssp HHHHHHHHHH-----HSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--SB---HHHHHHHHHH
T ss_pred hHHHHHHHHh-----cCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEecc-CCCCCHHHHHHHHHH
Confidence 3455556564 47888999999999988999999999999999999999866 689998888866543
|
It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0062 Score=65.98 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-----CCCcccEEEe---cC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FPLLREVKIG---IN 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-----~~~~~~v~i~---~~ 165 (442)
++...|.|+||+|+||..++..|+..|. .|.+. .++.+++.....++.+.. .....++.+. ..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vval----~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRAG----VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3446899999999999999999998774 24442 445555554443332210 0000112211 11
Q ss_pred c----ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 P----YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 ~----~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+ .+++.++|+||.++|.......+-...+..|..-...+++.+.+. + -+.||+++-
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-g-VgRIV~VSS 208 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-K-VNHFILVTS 208 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-C-CCEEEEEcc
Confidence 1 345789999999888654322222233555666677777777664 2 345666653
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.003 Score=65.11 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=67.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC----CCCCCceEEEeccccchhhhHHHHHHHHhc--ccC------CCcccEE
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELED--SLF------PLLREVK 161 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l----~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~--~~~------~~~~~v~ 161 (442)
.+.+||+|||| |.-|.++|..|...+. |+. ++.|+..+.+.+.. .++.++++ ... .+..++.
T Consensus 9 ~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~---~~~~~in~~~~N~~ylp~~~Lp~ni~ 82 (365)
T PTZ00345 9 CGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGE---KLSDIINTKHENVKYLPGIKLPDNIV 82 (365)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccch---HHHHHHHhcCCCcccCCCCcCCCceE
Confidence 34579999995 9999999999998763 332 47776554322111 22333332 111 1234677
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh--hhCCCeEEEEeC
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA--VASRNVKVIVVG 222 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~--~a~p~a~vivvt 222 (442)
.+++..+++++||+||++.- .+.++++++.++. +..++.++|.++
T Consensus 83 ~tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 83 AVSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred EecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence 88887889999999998733 3567777777776 332344555444
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0029 Score=62.57 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |++|.+++..|+..+.+.. ..|.. .|++.++++....++ . +.+..+..+.+++||+|
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~-~~I~v----~~r~~~~~~~l~~~~-----g----~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSP-DQIIC----SDLNVSNLKNASDKY-----G----ITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCC-ceEEE----ECCCHHHHHHHHHhc-----C----cEEeCCcHHHHhhCCEE
Confidence 58999995 9999999999999886432 23444 355555554322111 1 33445566778999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 68 iLavk 72 (272)
T PRK12491 68 ILSIK 72 (272)
T ss_pred EEEeC
Confidence 98743
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0028 Score=65.16 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--------------cccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------------~~~v~i 162 (442)
|||+||| +|=||...+-.|++.|. ++.. +|+| +.+.+. |.+...|. ..+.+.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv~--vDid--~~KV~~----ln~g~~PI~EpgLe~ll~~~~~~gRl~f 66 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVVC--VDID--ESKVEL----LNKGISPIYEPGLEELLKENLASGRLRF 66 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEEE--EeCC--HHHHHH----HhCCCCCCcCccHHHHHHhccccCcEEE
Confidence 6999999 69999999999999773 2444 3333 344332 22222121 124778
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a 212 (442)
+++-.++++++|+++|+.|.|.++.. -.| ...+...++.|.++.
T Consensus 67 Ttd~~~a~~~adv~fIavgTP~~~dg-~aD-----l~~V~ava~~i~~~~ 110 (414)
T COG1004 67 TTDYEEAVKDADVVFIAVGTPPDEDG-SAD-----LSYVEAVAKDIGEIL 110 (414)
T ss_pred EcCHHHHHhcCCEEEEEcCCCCCCCC-Ccc-----HHHHHHHHHHHHhhc
Confidence 88878899999999999998877622 222 345556666666553
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=57.46 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||| |+||.+|+..|...+. +|.- + ..++.+..+..+..+. ...+ .+..+.+++||+
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~--v-~srs~~sa~~a~~~~~--------~~~~-~~~~~~~~~aDl 71 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGH-----EVVG--V-YSRSPASAERAAAFIG--------AGAI-LDLEEILRDADL 71 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTS-----EEEE--E-SSCHH-HHHHHHC--T--------T------TTGGGCC-SE
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE--E-EeCCcccccccccccc--------cccc-cccccccccCCE
Confidence 579999996 9999999999999884 2322 1 2444433332221111 2222 345788999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh-CCCeEEEEeCC---chhHHHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGN---PCNTNALI 231 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a-~p~a~vivvtN---Pvd~lt~~ 231 (442)
+|++... ..+.+++++|..+. ...+.+++-+- +.+++..+
T Consensus 72 v~iavpD----------------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 72 VFIAVPD----------------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp EEE-S-C----------------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred EEEEech----------------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 9998431 34777777777641 02345555553 34666554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=63.80 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH-HhcccCCC-cc--cEEEecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPL-LR--EVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D-L~~~~~~~-~~--~v~i~~~~~eal~d 172 (442)
|||+|+|+ |.+|..++..|...+. .+.++ ++ .++++..... +. ..... .. .....++..+..++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~~----~r-~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTFL----VR-PKRAKALRERGLV-IRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEEE----ec-HHHHHHHHhCCeE-EEeCCCeEEecceeecCHHHccCC
Confidence 58999995 9999999999998763 36663 33 3344432210 00 00000 00 11122333344589
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~ 230 (442)
+|+||++...+ -+.++.+.+..+..++..|+.+.|.++....
T Consensus 69 ~d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~ 110 (305)
T PRK12921 69 FDLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ 110 (305)
T ss_pred CCEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH
Confidence 99999984421 1333444444443467788889998865443
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0047 Score=61.07 Aligned_cols=100 Identities=26% Similarity=0.247 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~-~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
.|||+|||+ |++|.+++..|+..+.... ..+.+ + +++. ++++..+.++ .+.+..+..+.+++||
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~-~~v~v--~--~r~~~~~~~~l~~~~---------g~~~~~~~~e~~~~aD 67 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKG-EQITV--S--NRSNETRLQELHQKY---------GVKGTHNKKELLTDAN 67 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE--E--CCCCHHHHHHHHHhc---------CceEeCCHHHHHhcCC
Confidence 369999995 9999999999998874332 12433 2 4432 3344332211 1344455567789999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+||++.. | +.+.++...+..+..++.+||.+.+-+.
T Consensus 68 vVilav~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 68 ILFLAMK----P------------KDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred EEEEEeC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9999733 1 2233333444443335667777655543
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0037 Score=65.29 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~~~~ 166 (442)
|||+||| +|.+|..++..|+..|. ++..+ |++.++++.+.........+. ..+++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~~----d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTGV----DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEEE----ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 4899999 59999999999998774 25453 444455443321100000000 1125555555
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++++||+||++.+.|..... .. +...+.+....+.++..++.++++.|
T Consensus 71 ~~~~~~advvii~vpt~~~~~~-~~-----d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDG-SP-----DLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCC-Cc-----ChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 6789999999999776654311 11 12334444444444433455555444
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0063 Score=64.25 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||||.|.+|..++..|...|. .+.++ +++.+.+...+.++ .+....+..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v~----~r~~~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIVT----GRDPKKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEEE----ECChHHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 5899998679999999999998774 25443 44444433333322 123334556789999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++... ..+.++.+.+..+..++++++.+++
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 998441 1222333333333346677777775
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=62.29 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=60.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEE---EecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVK---IGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~---i~~~~~eal~d 172 (442)
|||+|||| |.+|..++..|...|. ++.+. +++.+.++....+ .. .. ..... ....+.+.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTLV----ARRGAHLDALNEN---GL-RLEDGEITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECChHHHHHHHHc---CC-cccCCceeecccCCCChhHcCC
Confidence 58999995 9999999999998763 36664 3333333322211 10 00 01111 11233444599
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~ 230 (442)
+|+||++.... -+.++.+.+..+.+++..|+...|..+..-.
T Consensus 67 ~d~vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 67 QDLVILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCEEEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 99999984421 1233444444443467788899998765443
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0059 Score=58.79 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|||+ |++|.+++..|+..+.... +.+.+ ++ +.+.++++..+..+ .+..+.+..+.++++|
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~~--~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEIIV--SN-RSNVEKLDQLQARY---------NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEEE--EC-CCCHHHHHHHHHHc---------CcEEeCChHHHHhcCC
Confidence 4579999995 9999999999988763221 11322 21 22334444332211 1334455667789999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||++.
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 999873
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0044 Score=62.67 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc----CCCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~----~~~~~~v~i~~~~~eal~ 171 (442)
+|||+|||+ |.+|..++..|+..|. ++.++ +++.++++.......... ..+..++..+.+..++++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~~----~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV-----PVRLW----ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc
Confidence 679999995 9999999999998774 35553 444455444432211100 011122555556667889
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+||++.
T Consensus 74 ~aD~Vi~~v 82 (328)
T PRK14618 74 GADFAVVAV 82 (328)
T ss_pred CCCEEEEEC
Confidence 999999873
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0057 Score=60.57 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|.+++..|...+.+.. ..+.++ +.+ ..++++.. .... + .+.++.+..+.++++|+
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~-~~V~~~--~r~-~~~~~~~l----~~~~-~---~~~~~~~~~e~~~~aDv 67 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATP-EEIILY--SSS-KNEHFNQL----YDKY-P---TVELADNEAEIFTKCDH 67 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ccEEEE--eCC-cHHHHHHH----HHHc-C---CeEEeCCHHHHHhhCCE
Confidence 568999995 9999999999998874322 134442 211 12222222 1111 1 23444555677899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++.. .+.+.++.+.+..+..++..|+.+.|-+
T Consensus 68 Vilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 68 SFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred EEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 998743 1234444444444322344566666644
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0046 Score=60.39 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=59.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|++|..++..|+..+...+ ..|.+ + .+++.++++.. .+. .+.+..+..+.+++||+|
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~-~~i~v--~-~~r~~~~~~~~----~~~------g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP-SRIST--A-DDSNPARRDVF----QSL------GVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc-ceEEE--E-eCCCHHHHHHH----HHc------CCEEeCChHHHHhcCCEE
Confidence 6899999 59999999999998875332 12333 2 14454554322 111 134445566778999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|++.. | +.+.++...+.....++.++|..++..
T Consensus 66 il~v~-~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 66 ILAVK-P---------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred EEEEC-c---------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 99842 2 224444444444334566666665554
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=63.38 Aligned_cols=105 Identities=20% Similarity=0.108 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC-C------cccEEEecCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L------LREVKIGINPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~-~------~~~v~i~~~~~e 168 (442)
|+||+|||+ |.||..++..|...|. ++.++ +++. ..+....+-...... . ..++... .+.+
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~-----~V~~~----~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 69 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA-----DVTLI----GRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPA 69 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC-----cEEEE----ecHH-HHHHHHhcCceeecCCCcceecccceeEec-cChh
Confidence 469999995 9999999999999874 36663 3322 112111100000000 0 0112233 3457
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+++++|+||++...+. ..++.+.+..+..++.+|+..+|..+..
T Consensus 70 ~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred hccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 8899999999854221 1223344444445677888889987644
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0049 Score=60.28 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|..++..|...+.. . ..+.+ .+++.+.++.....+ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~-~-~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVP-A-KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCC-c-ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 99999999999987741 1 12444 255555544332211 12333445567889999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++.. ...+.++.+.+..+. +..|+.++|-.
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~~--~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQL--DKLVVSIAAGV 97 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhhc--CCEEEEecCCC
Confidence 999843 233555555555542 45677777755
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0035 Score=61.71 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||++||+ |++|.+++..|...+.+.. +.|.+ .+++.+++...+.++ +. ..+.+..++...+|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~-~~I~v----~~~~~e~~~~l~~~~-----g~----~~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPP-EEIIV----TNRSEEKRAALAAEY-----GV----VTTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCc-ceEEE----eCCCHHHHHHHHHHc-----CC----cccCcHHHHHhhCCE
Confidence 579999995 9999999999999995543 23544 477766665333322 21 124566788999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 66 v~Lav 70 (266)
T COG0345 66 VFLAV 70 (266)
T ss_pred EEEEe
Confidence 99873
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0038 Score=66.51 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC---------CcccEEEecCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------LLREVKIGINP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~---------~~~~v~i~~~~ 166 (442)
||||+||| +|.||..++-.|+..|. + -.+..+ |.++++.+.+-.......-+ ...+.+.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g--~~V~gv----D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-D--IEVVVV----DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-C--CeEEEE----ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 57999999 59999999999998752 1 124443 34445554332211110000 01236677766
Q ss_pred ccccCCCcEEEEeCCcCCCCCC----cHHhHHHHHHHHHHHHHHHHHhhhCCCeE-EEEeCCchhH
Q 013466 167 YELFEDAEWALLIGAKPRGPGM----ERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNT 227 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~-vivvtNPvd~ 227 (442)
.+++++||++|++.+.|.++.. ...| ..-+.+.++.|.++..++.+ |+--|-|..+
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~D-----ls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCc-----HHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 7789999999999998864321 1222 23455555666665433333 2223566643
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=57.05 Aligned_cols=116 Identities=20% Similarity=0.124 Sum_probs=77.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC-------
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------- 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------- 165 (442)
+++..+.|.||+++||..++..|+..|. ++.| +.|++++|+.++.+|++.. . ..+.+ ..|
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~--v~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-G--VEVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-C--ceEEEEECcCCChhHH
Confidence 3456899999999999999999999885 3555 4788999999999998653 1 12322 112
Q ss_pred ------cccccCCCcEEEEeCCcCCC------CCCcHHhHHHHHHHHHHHHH----HHHHhhhCCCeEEEEeCC
Q 013466 166 ------PYELFEDAEWALLIGAKPRG------PGMERAGLLDINGQIFAEQG----KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 ------~~eal~dADiVIi~ag~~~k------pg~~r~dll~~N~~Ii~~i~----~~I~~~a~p~a~vivvtN 223 (442)
..+..-+.|+.|..||...- +..+-.+++.-|+--+..+. +.+.+. ..|.||+++-
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~--~~G~IiNI~S 143 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER--GAGHIINIGS 143 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 11222368999999886531 22244567777765554444 455552 3567777764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.006 Score=63.13 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE--ecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (442)
|+||.|||| |+||+.++..|++.+. + +|.+ .|++.+++...+... +.... ...+.+ .....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~~~-~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAELI-GGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHhhc-cccce-eEEecccChHHHHHHHhcC
Confidence 679999996 9999999999999886 2 3666 366766665443321 11000 001111 12246889999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||.++.
T Consensus 70 d~VIn~~p 77 (389)
T COG1748 70 DLVINAAP 77 (389)
T ss_pred CEEEEeCC
Confidence 99999866
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0061 Score=60.32 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|...+. .|.++ |++.+.++. +.+.. .+.....+.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~~----d~~~~~~~~-a~~~g--------~~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYGV----SRRESTCER-AIERG--------LVDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHH-HHHCC--------CcccccCCHhHhcCCCEE
Confidence 4899999 59999999999998764 25553 444444432 22111 011123345678999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 62 ilavp 66 (279)
T PRK07417 62 ILALP 66 (279)
T ss_pred EEcCC
Confidence 99843
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0051 Score=53.07 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+|+||+|.+|..++..|...+-+. +. .++....+..+.-.. ..... ....+..+...+.+.+.++|+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~~-~~~~~~~~~g~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----LV-ALVSSSRSAGKPLSE---VFPHP-KGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----EE-EEEESTTTTTSBHHH---TTGGG-TTTEEEBEEETSGHHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----EE-EeeeeccccCCeeeh---hcccc-ccccceeEeecchhHhhcCCEEE
Confidence 79999999999999999999966432 21 222222111111111 11000 11124445445678889999999
Q ss_pred EeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 178 i~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++.+ ....+++++.+.+ .+.+||-.+.
T Consensus 72 ~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s~ 98 (121)
T PF01118_consen 72 LALP----------------HGASKELAPKLLK---AGIKVIDLSG 98 (121)
T ss_dssp E-SC----------------HHHHHHHHHHHHH---TTSEEEESSS
T ss_pred ecCc----------------hhHHHHHHHHHhh---CCcEEEeCCH
Confidence 9855 2455666666644 3556655553
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.027 Score=58.56 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=46.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--------cccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------LREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------~~~v~i~~~~~e 168 (442)
|||+||| +|.||..++..++. |. ++..+ |+++++++..........-+. ..+.+.+++..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vigv----D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVAL----DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEEE----ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 5899999 59999999987775 52 25553 444555543322111110000 113444455577
Q ss_pred ccCCCcEEEEeCCcC
Q 013466 169 LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 al~dADiVIi~ag~~ 183 (442)
+.++||+||++...|
T Consensus 70 ~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 70 AYRDADYVIIATPTD 84 (388)
T ss_pred hhcCCCEEEEeCCCC
Confidence 889999999987765
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.013 Score=59.17 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcc----cEEEecCccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR----EVKIGINPYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~----~v~i~~~~~eal 170 (442)
..++|+|.||+|.||++++..|+++|+. ....+ . ...++++ ..+..+|+... ..+. ++.-...-.+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~----V~gtV-R-~~~~~k~-~~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT----VRGTV-R-DPEDEKK-TEHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE----EEEEE-c-Ccchhhh-HHHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 4579999999999999999999999972 12221 1 1222222 23566666443 2111 111112236789
Q ss_pred CCCcEEEEeCCcCCCCCC-cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~-~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++||.|+.+|....-... ...++++-+++-...+.+.+.+. +..+=+|+|.-+
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS~ 130 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSST 130 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEeccH
Confidence 999999999764321122 24567888888888999998885 366656666543
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0032 Score=64.77 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=71.9
Q ss_pred CcceeeEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc
Q 013466 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (442)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~ 152 (442)
|.||.++|.- +..++ .+..+.+||.|+||+|.||++++..|...|. .|... ++..... +...
T Consensus 1 ~~~~~~~~~~-~~~~~--~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~v----~r~~~~~------~~~~ 62 (370)
T PLN02695 1 ESYGAYTLAE-LEREP--YWPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIAS----DWKKNEH------MSED 62 (370)
T ss_pred CCccccchhh-cCCCC--CCCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEEE----Eeccccc------cccc
Confidence 4688777643 22222 2444568999999999999999999998774 24332 2211110 0000
Q ss_pred cCCCcccEEEecC------cccccCCCcEEEEeCCcCCCCCC---cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 153 LFPLLREVKIGIN------PYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 153 ~~~~~~~v~i~~~------~~eal~dADiVIi~ag~~~kpg~---~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
. ....+. ..| ..+.++++|+||.+++.....+. .....+..|......+.+.+.+. +.. .++.++.
T Consensus 63 ~--~~~~~~-~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 M--FCHEFH-LVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred c--ccceEE-ECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0 000111 111 12346789999998864321111 22334667888888888888774 232 5555554
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=57.43 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+||| +|.+|..++..|...+... .|.++ |++.+.++ .+.++ .. ...+..+..+.+++||+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~~----dr~~~~~~-~a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVGA----DRSAETRA-RAREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEEE----ECCHHHHH-HHHhC-----CC--CceecCCHHHHhcCCCE
Confidence 36899999 5999999999999877421 24443 44444443 22211 11 11223445677899999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||++..
T Consensus 70 Viiavp 75 (307)
T PRK07502 70 VILCVP 75 (307)
T ss_pred EEECCC
Confidence 999854
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=60.85 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC-cccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~-~~eal~ 171 (442)
++.|||.|+||+|.||++++..|+..|. .|...+.+.....+.+ ..+. .. + .+... .| ..+.+.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~ldr~~~~~~~~~----~~~~-~~-~---~~~~~~~Di~~~~~~ 183 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIVIDNFFTGRKENL----VHLF-GN-P---RFELIRHDVVEPILL 183 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEEEeCCCCccHhHh----hhhc-cC-C---ceEEEECcccccccc
Confidence 4568999999999999999999999874 2443221111011111 1111 00 0 12211 11 234577
Q ss_pred CCcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 DAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 dADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+|+... ....+..+.+..|+.-...+.+.+.+. + ..+|.++.
T Consensus 184 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g--~r~V~~SS 234 (436)
T PLN02166 184 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--ARFLLTST 234 (436)
T ss_pred CCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECc
Confidence 8999999887432 122345677889999999999988875 3 36666664
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0053 Score=54.14 Aligned_cols=75 Identities=21% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|| |++|..+++.|...|. +.|.+ .+|+.++++.++..+.... ..+.-..+..+.+.++|+
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~----~~i~i----~nRt~~ra~~l~~~~~~~~----~~~~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGA----KEITI----VNRTPERAEALAEEFGGVN----IEAIPLEDLEEALQEADI 78 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTS----SEEEE----EESSHHHHHHHHHHHTGCS----EEEEEGGGHCHHHHTESE
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCC----CEEEE----EECCHHHHHHHHHHcCccc----cceeeHHHHHHHHhhCCe
Confidence 579999996 9999999999999886 23655 4788888887777662111 112223445567889999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+.+.+
T Consensus 79 vI~aT~~~ 86 (135)
T PF01488_consen 79 VINATPSG 86 (135)
T ss_dssp EEE-SSTT
T ss_pred EEEecCCC
Confidence 99985544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0092 Score=59.43 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+|| |++|.++++.|+..|.- .|.+ .|++.+++++++.++.+.. +. ..+....+.++.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999988852 3655 3677788898888886542 21 112111223567899999
Q ss_pred EEEe
Q 013466 176 ALLI 179 (442)
Q Consensus 176 VIi~ 179 (442)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9987
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=61.05 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~~~ 165 (442)
++||+||| .|.||..++..|+..|. ++..+ |+++++++.+.....+...+- ....+.++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~~----D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIGV----DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 57999999 59999999999999873 25443 445555554321110000000 01122322
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC-CchhHH
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTN 228 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt-NPvd~l 228 (442)
++++||+||++...|.++.. .. +...+.+....|.++..++.+||+-| -|....
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~~-----dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-EP-----DLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-Cc-----ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 24589999999887653321 11 12334444455555544555555544 455433
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.025 Score=51.42 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=58.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------cccccC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYELFE 171 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~eal~ 171 (442)
|.|+||+|.+|..++..|+..+. +|... -++.++++. . + ++.+... ..++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~~----~R~~~~~~~--------~-~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTAL----VRSPSKAED--------S-P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEEE----ESSGGGHHH--------C-T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEEE----ecCchhccc--------c-c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999999883 24442 344455443 1 1 2222211 256789
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++|.||.+.|.+.+ + ...++.+.+.+++. +. ..++.++
T Consensus 60 ~~d~vi~~~~~~~~------~-----~~~~~~~~~a~~~~-~~-~~~v~~s 97 (183)
T PF13460_consen 60 GADAVIHAAGPPPK------D-----VDAAKNIIEAAKKA-GV-KRVVYLS 97 (183)
T ss_dssp TSSEEEECCHSTTT------H-----HHHHHHHHHHHHHT-TS-SEEEEEE
T ss_pred hcchhhhhhhhhcc------c-----cccccccccccccc-cc-ccceeee
Confidence 99999999875543 1 56777888888774 32 2455444
|
... |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=58.33 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||+ |.+|.+++..|...|. +|.++ +++.. .+..+++++||+
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~-----~V~~~----~r~~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH-----RVRVW----SRRSG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC-----EEEEE----eCCCC-----------------------CCHHHHHhcCCE
Confidence 468999995 9999999999999874 35553 22211 123467789999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh-hCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~-a~p~a~vivvtNP 224 (442)
||++.- .+.++++++.+..+ ..++.+++..++.
T Consensus 51 vi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 51 IVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred EEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 999833 12355555556542 2467788888873
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=58.18 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (442)
|||.|+||+|.+|++++..|...|. +|... .++..... .+.+..... ..++.-.....++++++|+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~l----~R~~~~~~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~ 67 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRCL----VRNLRKAS----FLKEWGAELVYGDLSLPETLPPSFKGVTA 67 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEEE----EcChHHhh----hHhhcCCEEEECCCCCHHHHHHHHCCCCE
Confidence 5899999999999999999998874 24331 33322221 111110000 0000000112567899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||.+++... .+..+....|..-...+.+++++. +-. .+|.+|
T Consensus 68 Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 68 IIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred EEECCCCCC---CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 998765321 112234455666667777777764 333 455555
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=56.60 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |++|.+++..|...+.+.. +.+.. + +++.+.+ .+....++.+.++++|+|
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~-~~i~~--~--~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGK-ENIYY--H--TPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCc-ceEEE--E--CCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 68999995 9999999999998876543 23444 2 3332221 112334556678899999
Q ss_pred EEe
Q 013466 177 LLI 179 (442)
Q Consensus 177 Ii~ 179 (442)
|++
T Consensus 62 ila 64 (260)
T PTZ00431 62 VLA 64 (260)
T ss_pred EEE
Confidence 987
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=59.18 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|+|| |.||+.++..|.+.+ - .+.+... ++..+++...-..+.+... ..........+.+.+..+|+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~~R--~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLLVR--SRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEEec--HHHHHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEE
Confidence 69999995 999999999999988 2 1444221 2111333322222322221 001123345567888899999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
|++...- -..+..+.+..+.+++++|+.+-|=....-
T Consensus 72 iv~vKa~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 72 IVTVKAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred EEEeccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 9984421 134555666666678889999999876655
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.042 Score=54.66 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecC-cccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~-~~eal~dA 173 (442)
++||+|+| .|.||..++..|...|.. +.+.. .|++.+.++ +..+++.|. ...+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~i~g--~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VRIIG--RDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EEEEe--ecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999999974 44433 344433322 111222111 1122 26889999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k 234 (442)
|+||++.- +....++.+++..+..++++|.-++--=......+.+
T Consensus 66 D~VivavP----------------i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~ 110 (279)
T COG0287 66 DLVIVAVP----------------IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEK 110 (279)
T ss_pred CEEEEecc----------------HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHH
Confidence 99999844 2233333433343335678887776443333333333
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=56.47 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH--HhcccCCCcccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--LEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D--L~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.|||+|+|| |.||..++..|...|. ++.+. ++..+.++.+-.+ +.-........+.+...+.+.....
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~lv----~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~ 71 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRLI----LRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPI 71 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEEE----EechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccccc
Confidence 368999996 9999999999998773 36663 3333344322211 1000000001111212223445688
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCC-cceeeccch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP-AKNFHALTR 249 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p-~kvig~gT~ 249 (442)
|+||++... .. ..+..+.+..+.++++.++.+-|=++..-.+. +. ++ .+++++.+.
T Consensus 72 D~viv~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~---~~~~~v~~g~~~ 128 (305)
T PRK05708 72 HRLLLACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR---VPHARCIFASST 128 (305)
T ss_pred CEEEEECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh---CCCCcEEEEEee
Confidence 999998441 11 22333445555568889999999887654433 22 23 356655443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.028 Score=54.76 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=45.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |++|..++..|...+.-. +.+.+ .+++.++++..+..+ + .+.+..+..+.+++||+|
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 48999995 999999999999877411 12333 255556555333221 1 134445556678899999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 66 ilav~ 70 (258)
T PRK06476 66 FLAVR 70 (258)
T ss_pred EEEeC
Confidence 99844
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.02 Score=57.70 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~------~~~e 168 (442)
.++|.|+||+|.||++++..|+..+-.. .|.+. +++.........++.. .++.+. . ...+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~---~V~~~----~r~~~~~~~~~~~~~~------~~~~~v~~Dl~d~~~l~~ 70 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPK---KIIIY----SRDELKQWEMQQKFPA------PCLRFFIGDVRDKERLTR 70 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCc---EEEEE----cCChhHHHHHHHHhCC------CcEEEEEccCCCHHHHHH
Confidence 4689999999999999999999865211 24332 2222222222222211 012111 1 1234
Q ss_pred ccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++.|+||..+|....+ ..+..+.+..|..-...+.+.+.+. +. ..|+.++
T Consensus 71 ~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~-~~iV~~S 124 (324)
T TIGR03589 71 ALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GV-KRVVALS 124 (324)
T ss_pred HHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEe
Confidence 577899999988864322 2244567888988888888887774 22 3555555
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.037 Score=58.53 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC-cccccCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-PYELFED 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~-~~eal~d 172 (442)
+.+||.|+||+|.||++++..|+..|. .|.. + |+..........+. ...+ ++.. ..| ....+.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~--l--d~~~~~~~~~~~~~--~~~~---~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV--V--DNFFTGRKENVMHH--FSNP---NFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE--E--eCCCccchhhhhhh--ccCC---ceEEEECCccChhhcC
Confidence 457999999999999999999999874 2433 1 11101111111111 0001 1222 112 2345678
Q ss_pred CcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 173 ADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+|+||.+|+... ....+-.+.+..|+.....+.+.+.+. + ..+|.++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999999887432 111234567788998889999888774 2 36776664
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.02 Score=58.41 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
..+|.|+||+|.||+.++..|... +. . .+.+ .+++.++++..+.++.+.. + .+..+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv-~---~lil----v~R~~~rl~~La~el~~~~------i---~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGV-A---ELLL----VARQQERLQELQAELGGGK------I---LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCC-C---EEEE----EcCCHHHHHHHHHHhcccc------H---HhHHHHHccCC
Confidence 469999999899999999999854 32 1 2444 3566677776666553221 1 13457899999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+|+.+++.+...-.+..++ .+..+++-++-|=|+-
T Consensus 218 iVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd 252 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLD 252 (340)
T ss_pred EEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCC
Confidence 9999888664211222211 2567888888886654
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.021 Score=57.46 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dA 173 (442)
.++||+|||| |.||..++..|...|. ++.+...+ . .+........+....... ...+.+. ...++...+
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~~r~--~-~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 73 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFLLRS--D-YEAVRENGLQVDSVHGDFHLPPVQAY-RSAEDMPPC 73 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEEEeC--C-HHHHHhCCeEEEeCCCCeeecCceEE-cchhhcCCC
Confidence 3579999995 9999999999998763 36554322 1 111110000010000000 0012222 234467889
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~ 249 (442)
|+||++.-... ..+..+.+..+.++++.++...|=.+..-.+ .+. +|. +++++.+.
T Consensus 74 D~vilavK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l-~~~---~~~~~v~~g~~~ 130 (313)
T PRK06249 74 DWVLVGLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQL-REI---LPAEHLLGGLCF 130 (313)
T ss_pred CEEEEEecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHHH-HHH---CCCCcEEEEeee
Confidence 99999843211 1233333444445788888898877643332 232 233 56655443
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.027 Score=60.04 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---C
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---d 172 (442)
|.+|+||| .|.+|..++..|+..|. .|.++ |++.++.+.......+. . ..+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v~----dr~~~~~~~l~~~~~~~--g--~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISVY----NRTYEKTEEFVKKAKEG--N--TRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHhhhhc--C--CcceecCCHHHHHhcCCC
Confidence 45899999 59999999999999885 25553 55556655443221110 0 12333344444443 5
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+|+||+..- +.+.++++.+.+..+..++.+||..+|=
T Consensus 67 ~d~Iil~v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 67 PRKVILLIK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCEEEEEeC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 898877632 1244555555555554578889999974
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.045 Score=56.33 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~------~~ 167 (442)
++|||.|+||+|.||++++..|+..+-. .|.. + +++.+..... .++... ....++++.. | ..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~--l--~r~~~~~~~l-~~~~~~--~~~~~~~~~~~Dl~d~~~l~ 81 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA--L--DVYNDKIKHL-LEPDTV--PWSGRIQFHRINIKHDSRLE 81 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE--E--ecCchhhhhh-hccccc--cCCCCeEEEEcCCCChHHHH
Confidence 3579999999999999999999986421 2332 2 3222222211 001000 0001222211 1 23
Q ss_pred cccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+|+...-.. .+..+.+..|..-...+.+...+. + ..+|.++.
T Consensus 82 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 82 GLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 56788999999987532111 122344556765556666666553 2 35666664
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.039 Score=56.78 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=44.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-CcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~dADi 175 (442)
+||+|+||+|.||+.+...|....-|.. ..++++...+. .|...... .....+.. .+.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~~s----~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTSQL----GQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEchhh----CCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999999985554532 34554543322 11111111 11223332 23358999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999876
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.066 Score=53.40 Aligned_cols=88 Identities=8% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.|||.|+||+|.+|++++..|...|. ++.+.. .+ ....+.+..|+.+ .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~~--~~--~~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYGS--GR--LENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEec--Cc--cCCHHHHHHHHHh-------------------cCCCE
Confidence 46999999999999999999998774 243211 11 1112222223321 15799
Q ss_pred EEEeCCcCCCCC-----CcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 176 VIi~ag~~~kpg-----~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
||.+|+....+. ....+.+..|......+++.+.+.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999887543222 234567788888888888888775
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.024 Score=59.66 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc----------ccEEEec
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----------REVKIGI 164 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~----------~~v~i~~ 164 (442)
++|||+||| .|.||..++..|+. + + ++..+ |+++++.+.+. ....+.. .....+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~-~-~----~V~g~----D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGK-S-R----QVVGF----DVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhc-C-C----EEEEE----eCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 358999999 69999999999887 3 2 24443 44555555433 2221110 123343
Q ss_pred CcccccCCCcEEEEeCCcCCC
Q 013466 165 NPYELFEDAEWALLIGAKPRG 185 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~k 185 (442)
.+.+++++||++|++.+.|.+
T Consensus 69 ~~~~~~~~advvii~Vptp~~ 89 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPIN 89 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCCC
Confidence 456789999999999887753
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.026 Score=56.24 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=45.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||++|| .|.+|+.++..|+..|. ++..+ |++.++.... +... .........++.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v~----~r~~~ka~~~---~~~~------Ga~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTVY----NRTPEKAAEL---LAAA------GATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEEE----eCChhhhhHH---HHHc------CCcccCCHHHHHHhCCEE
Confidence 5899999 79999999999999995 24443 4554553222 2111 122334567999999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|....
T Consensus 62 itmv~ 66 (286)
T COG2084 62 ITMLP 66 (286)
T ss_pred EEecC
Confidence 98744
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.028 Score=52.32 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||||+|.+|+.++.....+|. +...+ -+|..++... + ..+-....+---+...+++++-|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAi-----vRn~~K~~~~----~-~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAI-----VRNASKLAAR----Q-GVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEE-----EeChHhcccc----c-cceeecccccChhhhHhhhcCCceE
Confidence 6999999999999999999999996 23344 2333333210 0 0000000111012234889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|-+-|.+. ++.+- .-.+....+...++.. -...+++++-
T Consensus 67 IsA~~~~~-~~~~~-----~~~k~~~~li~~l~~a--gv~RllVVGG 105 (211)
T COG2910 67 ISAFGAGA-SDNDE-----LHSKSIEALIEALKGA--GVPRLLVVGG 105 (211)
T ss_pred EEeccCCC-CChhH-----HHHHHHHHHHHHHhhc--CCeeEEEEcC
Confidence 98755332 22211 1123355555566652 3567777775
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.014 Score=57.79 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccCCCcEEEE
Q 013466 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (442)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~dADiVIi 178 (442)
|+||+|.+|++++..|+..+-.. .|.. +|......... ++.+... ....+++-..+..++++++|+||.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~---~Vr~--~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIY---EVRV--LDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCce---EEEE--cccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 89999999999999999988421 2333 32222111111 1111110 000122222334689999999999
Q ss_pred eCCcCCCCC-CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 179 ~ag~~~kpg-~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+|....-.+ ..+..+...|++=.+.+.++..+. +.+-+|+|.-+
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~ 117 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSI 117 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCc
Confidence 987533233 356678888999999999887773 44444455443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.036 Score=55.76 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~e 168 (442)
++||.|+||+|.||++++..|+..|. .|.+...+. +..... .++.... .. .++.+ ..| ..+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~r~~----~~~~~~-~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTVRDP----ENQKKI-AHLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEECCC----CCHHHH-HHHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 56899999999999999999999774 243322221 111111 1111100 00 11221 111 234
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.++++|+||..|+.......+ ..+++..|..-...+.+.+.+.. .-..+++++
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~-~~~~~v~~S 130 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK-SVKRVILTS 130 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC-CccEEEEee
Confidence 578899999988743211112 23456788888888888877742 223555554
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.029 Score=56.10 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=56.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|...+. ++.++ |++.++++..... ... . .....+..+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~~----dr~~~~~~~l~~~--g~~-~----~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVGY----DHDQDAVKAMKED--RTT-G----VANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHc--CCc-c----cCCHHHHHhhcCCCCEE
Confidence 4899999 59999999999998774 25553 5555655543321 110 0 00001113356789999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|++.- . ..++++.+.+.....++.++|..+|..
T Consensus 64 i~~vp-----~-----------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 64 WVMVP-----H-----------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred EEEcC-----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 98732 1 134444444544444667888887753
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=52.76 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~------~~ 167 (442)
+++||.|+||+|.||++++..|+..+. .|...+.........+......+.+. . ..++.... | ..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~~d~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-----TVIGLDNFSTGYQHNLDDVRTSVSEE--Q-WSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-----EEEEEeCCCCcchhhhhhhhhccccc--c-CCceEEEEccCCCHHHHH
Confidence 357999999999999999999998773 24332211110011111110000000 0 01222221 2 12
Q ss_pred cccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+.++++|+||..|+.+..+. .+..+....|..-...+.+.+.+. +.. .++.++
T Consensus 86 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 86 KACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 34788999999987543221 234556778888888888888774 222 455554
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.023 Score=56.40 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=42.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+||| .|.+|..++..|+..|. +|.++ |++.++++.. .+. . .....+..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~~----dr~~~~~~~~----~~~--g----~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHVT----TIGPEVADEL----LAA--G----AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHH----HHC--C----CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998774 25553 5555554432 111 1 122244568899999999
Q ss_pred EeC
Q 013466 178 LIG 180 (442)
Q Consensus 178 i~a 180 (442)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 984
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.033 Score=56.08 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
..+||+|||+ |.+|..++..|...+.. .|.+ .+++.++++..+..+.. .+....+..+.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~----~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVA----EITI----ANRTYERAEELAKELGG-------NAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEEeHHHHHHHHhcCC
Confidence 3579999996 99999999999875531 3555 36666666666555431 1222233567789999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+||.+.+.|.- ..++.... ........+++-+++|-|+=
T Consensus 241 vVi~at~~~~~------------~~~~~~~~---~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 241 VVISATGAPHY------------AKIVERAM---KKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred EEEECCCCCch------------HHHHHHHH---hhCCCCCeEEEEeCCCCCCc
Confidence 99998775431 12222222 11112467899999998754
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.094 Score=52.77 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dA 173 (442)
+++||+||| .|.+|..++..|...|. .|.. + +++.. ...+.++ . +....+..+.+ .++
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~-----~V~~--~--d~~~~--~~~a~~~-----g----v~~~~~~~e~~~~~a 93 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGH-----TVLA--T--SRSDY--SDIAAEL-----G----VSFFRDPDDFCEEHP 93 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCC-----EEEE--E--ECccH--HHHHHHc-----C----CeeeCCHHHHhhCCC
Confidence 457999999 59999999999988662 2443 2 33321 1222221 1 12233334444 479
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHH-HhhhCCCeEEEEeCC
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKAL-NAVASRNVKVIVVGN 223 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I-~~~a~p~a~vivvtN 223 (442)
|+||++... ..+.++.+.+ ..+..++++|+.++.
T Consensus 94 DvVilavp~----------------~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 94 DVVLLCTSI----------------LSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred CEEEEecCH----------------HHHHHHHHhhhhhccCCCCEEEecCC
Confidence 999998441 2234444444 222346788877776
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.053 Score=51.92 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |.||..++..+-.+. .+- +.+.+ .|++.+++.....-+.. +..++..+.+.+.|+|
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~-~~~-e~v~v----~D~~~ek~~~~~~~~~~---------~~~s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGR-VDF-ELVAV----YDRDEEKAKELEASVGR---------RCVSDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCC-cce-eEEEE----ecCCHHHHHHHHhhcCC---------CccccHHHHhhcccee
Confidence 58999996 999999998877665 221 12333 25555655533221111 1115566777999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|-+|+ .+.+++++.++-+. +.|.+|+-++--+|
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALad 97 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALAD 97 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhccC
Confidence 99988 57899999888875 58999888876554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.074 Score=52.39 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|...+... .|.. + |++.+.++. +.++ .. +.... +.+.+.+||+|
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~~---~v~~--~--d~~~~~~~~-~~~~-----g~---~~~~~-~~~~~~~aD~V 62 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLIS---KVYG--Y--DHNELHLKK-ALEL-----GL---VDEIV-SFEELKKCDVI 62 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCC---EEEE--E--cCCHHHHHH-HHHC-----CC---CcccC-CHHHHhcCCEE
Confidence 4899999 5999999999999887521 2333 3 444444432 2221 11 11112 23335569999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 63 ilavp 67 (275)
T PRK08507 63 FLAIP 67 (275)
T ss_pred EEeCc
Confidence 99843
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.058 Score=50.96 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..||+|+|+ |++|+.++..|+..|+- .+.|.|.|
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg----~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIG----KLILVDFD 54 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCC----EEEEECCC
Confidence 469999996 99999999999999962 25565443
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.098 Score=52.03 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~--------- 166 (442)
.+.|.|.||+.+||.++|+.|+..|.- +++ .-+..++++-++.++.....+ . ++.+...|
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~-----l~l----var~~rrl~~v~~~l~~~~~~-~-~v~~~~~Dvs~~~~~~~ 80 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAK-----LVL----VARRARRLERVAEELRKLGSL-E-KVLVLQLDVSDEESVKK 80 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEE----eehhhhhHHHHHHHHHHhCCc-C-ccEEEeCccCCHHHHHH
Confidence 357889999999999999999998862 333 244556777777777755422 2 23221111
Q ss_pred -----ccccCCCcEEEEeCCcCCCCCC-------cHHhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 167 -----YELFEDAEWALLIGAKPRGPGM-------ERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~kpg~-------~r~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
...+.+.|+.|..||..+ .+. .....++.| +-+.+...+.+.+. + +|.|++++....-+
T Consensus 81 ~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r-~-~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 81 FVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR-N-DGHIVVISSIAGKM 155 (282)
T ss_pred HHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc-C-CCeEEEEecccccc
Confidence 245789999999999887 432 123355555 55667777888875 3 79999998766544
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.059 Score=55.61 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dAD 174 (442)
|+||+|+||+|.+|..+...|+...-|.. ..+.++.... ..+...++.+ ....+ ...+.+.++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~~----sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTSQ----AGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecchh----hCCcccccCC------CcceEEecCChhHhcCCC
Confidence 57999999999999999986666665532 1233333221 1111111111 11222 223356789999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999865
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.1 Score=53.69 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=42.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||| +|.||.+++..|...+. ++.++.+ +.+...+. .+ .. . ... -...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i~~~--~~~~~~~~-~a--~~-~--~~~--~~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFIIGY--DPSAAQLA-RA--LG-F--GVI--DELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEEEEe--CCCHHHHH-HH--hc-C--CCC--cccccCHHHHhcCCCEE
Confidence 3799999 59999999999999875 2555443 33222111 11 11 0 110 11234456778999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++.-
T Consensus 65 ilavP 69 (359)
T PRK06545 65 VLAVP 69 (359)
T ss_pred EEeCC
Confidence 99843
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.051 Score=55.64 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=47.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+.+||+||||+|.+|..+...|.....|.- -.|.++.++++..+ ...+. . .+..+..-+.++++++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~saGk----~~~~~----~--~~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRSAGK----TVQFK----G--REIIIQEAKINSFEGV 69 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECcccCCC----CeeeC----C--cceEEEeCCHHHhcCC
Confidence 3457999999999999999999996665532 12444444432222 11111 1 1344543456778999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++++
T Consensus 70 Divf~a~~ 77 (347)
T PRK06728 70 DIAFFSAG 77 (347)
T ss_pred CEEEECCC
Confidence 99999764
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.057 Score=54.68 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~------~~~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|.+... +.+.+.... ++.... ....++.+ .. ...+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~~~r----~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRATVR----DPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEEEEc----CcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 45899999999999999999998774 2433222 222222221 111100 00001111 11 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++|+||..|+.......+ ..+.+..|..-...+.+.+.+. +.-..|+.++-
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~r~v~~SS 128 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKA-KTVRRIVFTSS 128 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhc-CCceEEEEecc
Confidence 677899999988743211112 2356777888888888887764 22235666553
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.096 Score=52.45 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc----cccC-
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY----ELFE- 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~----eal~- 171 (442)
|||.|+||+|.||++++..|+..+. .+.+...... ..........++.+.. . .-+..-..+. ++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~Dl~d~~~~~~~~~~ 71 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVILDNLCN-SKRSVLPVIERLGGKH--P-TFVEGDIRNEALLTEILHD 71 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEEEecCCC-chHhHHHHHHHhcCCC--c-eEEEccCCCHHHHHHHHhc
Confidence 5899999999999999999998764 2443211111 1111111111111110 0 0011111112 2333
Q ss_pred -CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 -DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 -dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||..++..... .....+.+..|......+.+.+.+. + -..++.++.
T Consensus 72 ~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~Ss 124 (338)
T PRK10675 72 HAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N-VKNLIFSSS 124 (338)
T ss_pred CCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEecc
Confidence 589999988754321 1234567788988888898888774 2 234555554
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.046 Score=54.27 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+||| .|.+|..++..|+..+. ++.+ + |++.++.+.. ... .+....+..+.+++||+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~--~--d~~~~~~~~~----~~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--Y--DRNPEAVAEV----IAA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHC------CCeecCCHHHHHhcCCE
Confidence 35899999 59999999999998763 2444 2 4454444322 111 12233445677899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99984
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.068 Score=53.06 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~e 168 (442)
.+||.|+||+|.||++++..|+..|. .+.....+ ..... ....+.... ....++.+. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~~r~----~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKATVRD----PNDPK-KTEHLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEEEcC----CCchh-hHHHHHhcc-CCCCceEEEeccccCcchHHH
Confidence 36899999999999999999999875 24332222 11111 111111100 000112211 11235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++++|+||..++........ ..+.+..|+.-...+.+.+.+..+. ..++.++
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~~v~~S 126 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV-KRVVVTS 126 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcc
Confidence 678999999988743211112 2356778888888888877663111 2455554
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.078 Score=52.20 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|..++..|...+. +. +.+.+ .|++.++++..+.++ ......+..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~~-elv~v----~d~~~~~a~~~a~~~---------~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-NA-ELYAF----YDRNLEKAENLASKT---------GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-Ce-EEEEE----ECCCHHHHHHHHHhc---------CCeeECCHHHHhcCCCE
Confidence 479999995 9999999999887541 10 11222 255555554332211 12333444555689999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|++++.
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999864
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.05 Score=55.71 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|+||+|.+|..++..|...+.- ...|..+...++..+. .+.. . .++.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsaGk~----~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSAGKK----VTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCCCCe----eeec----C--ceeEEEeCCHHHHcCCC
Confidence 3579999999999999999999875532 1344334334332211 1111 1 13344333456789999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999865
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.042 Score=54.86 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|.||+||| .|.+|..++..|+..+. .+.++ |++.++++.... . ......+..+++++||+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v~----d~~~~~~~~~~~----~------g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQVF----DVNPQAVDALVD----K------GATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHHHH----c------CCcccCCHHHHHhcCCE
Confidence 35899999 59999999999998874 25443 455555543221 1 11233455678899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 61 Vi~~v 65 (296)
T PRK15461 61 VITML 65 (296)
T ss_pred EEEec
Confidence 99873
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.069 Score=54.21 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEe-c------Ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIG-I------NPY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~-~------~~~ 167 (442)
+++|.|+||+|.||++++..|+..|. .|.... ++.+... .....+.... .++.+. . ...
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~~----r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-----TVKGTV----RNPDDPKNTHLRELEGGK----ERLILCKADLQDYEALK 76 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEe----CCchhhhHHHHHHhhCCC----CcEEEEecCcCChHHHH
Confidence 56899999999999999999998874 243322 2222211 1111121110 112211 1 124
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++++|+||.+++... ....+.+..|..-...+.+.+.+. +.. .|+++|
T Consensus 77 ~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 77 AAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 56789999999987432 234556778888888888887764 222 455444
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.068 Score=54.58 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=44.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+|+||+|+||+|.+|..++..|...+. . ...|..+-..... |.-..+.. ....+..-+.++++++
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~h-P---~~~l~~v~s~~~a----G~~l~~~~------~~l~~~~~~~~~~~~v 67 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDF-P---VGTLHLLASSESA----GHSVPFAG------KNLRVREVDSFDFSQV 67 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCC-C---ceEEEEEECcccC----CCeeccCC------cceEEeeCChHHhcCC
Confidence 4568999999999999999999996553 1 1344444322111 11111111 1233332233457899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++.+
T Consensus 68 D~vFla~p 75 (336)
T PRK05671 68 QLAFFAAG 75 (336)
T ss_pred CEEEEcCC
Confidence 99999754
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.029 Score=51.75 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
||.|+|+ |++|+.++..|+..|+- .+.|.|.|
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg----~i~lvD~D 32 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG----NLKLVDFD 32 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC----eEEEEeCC
Confidence 6899995 99999999999999862 26665544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.042 Score=52.91 Aligned_cols=117 Identities=18% Similarity=0.078 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--Ccccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYEL---- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~ea---- 169 (442)
|++|.|+||+|+||..++..|+..|. .+.+. +++.+.++....++...... ...+.++. +..+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW-----RVGAY----DINEAGLAALAAELGAGNAW-TGALDVTDRAAWDAALADF 70 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHhcCCceE-EEEecCCCHHHHHHHHHHH
Confidence 35799999999999999999999874 24442 45555555444443311100 00111110 00111
Q ss_pred ----cCCCcEEEEeCCcCCCCCC---c---HHhHHHHHHHHHHHH----HHHHHhhhCCCeEEEEeCCc
Q 013466 170 ----FEDAEWALLIGAKPRGPGM---E---RAGLLDINGQIFAEQ----GKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 ----l~dADiVIi~ag~~~kpg~---~---r~dll~~N~~Ii~~i----~~~I~~~a~p~a~vivvtNP 224 (442)
....|+||.++|....... + -...+..|..-...+ .+.+++ .+.+.+++++-.
T Consensus 71 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~iv~isS~ 137 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA--TPGARVINTSSA 137 (260)
T ss_pred HHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh--CCCCEEEEeCch
Confidence 3356999999886532211 1 233455665533333 333443 245666666643
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.014 Score=58.16 Aligned_cols=122 Identities=22% Similarity=0.195 Sum_probs=67.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-C-CcccEEEecC-------cccc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P-LLREVKIGIN-------PYEL 169 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~-~~~~v~i~~~-------~~ea 169 (442)
|.|.||+|.||+.++..|+..+.. .|.+ + |+++..+..+..+|..... + ....+....+ ....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~----~lil--~--d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPK----KLIL--F--DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-S----EEEE--E--ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCC----eEEE--e--CCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 679999999999999999987641 2444 3 6667788877777742210 1 1001111111 2456
Q ss_pred cC--CCcEEEEeCCcCCCCCCc--HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC----CchhHHH
Q 013466 170 FE--DAEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (442)
Q Consensus 170 l~--dADiVIi~ag~~~kpg~~--r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt----NPvd~lt 229 (442)
++ +.|+|+.+|..-.-|-++ -.+.+..|+-=-+.+++...++ +-+-.|.+-| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCCcHHH
Confidence 77 999999998754333333 3556777766667777777775 3555555543 6666653
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.057 Score=51.85 Aligned_cols=79 Identities=22% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .+.|.|.|. |....+++..+..|.... |.. ++
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~-~i 93 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVG----KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDV-EI 93 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCC-EE
Confidence 359999995 99999999999999962 255543221 222235555555554332 211 22
Q ss_pred EEec-----C-cccccCCCcEEEEeCC
Q 013466 161 KIGI-----N-PYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~-----~-~~eal~dADiVIi~ag 181 (442)
.... . ..+.++++|+||.+..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d 120 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTD 120 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCC
Confidence 2211 1 1245789999998855
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.068 Score=47.33 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=66.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccE--EEecCcc-cccCCCc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REV--KIGINPY-ELFEDAE 174 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v--~i~~~~~-eal~dAD 174 (442)
|+|+|| |.||..++..|.+.+. ++.+. .+.. .++....+=-....... ..+ ......+ +.....|
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l~----~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTLV----SRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEEE----ESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEEE----Eccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 789995 9999999999998664 36663 3333 33332111000100110 011 1112222 5788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~ 249 (442)
+||++.... -..+..+.++.+..+++.|+.+-|=.+..-.+. +..+ +++++++.+.
T Consensus 70 ~viv~vKa~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~--~~~v~~g~~~ 125 (151)
T PF02558_consen 70 LVIVAVKAY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFP--RPRVLGGVTT 125 (151)
T ss_dssp EEEE-SSGG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHST--GSGEEEEEEE
T ss_pred EEEEEeccc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcC--CCcEEEEEEe
Confidence 999985421 133455556677668889999999776654333 2221 2366655544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.04 Score=48.26 Aligned_cols=78 Identities=22% Similarity=0.192 Sum_probs=47.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.||+|+|+ |.+|+.++..|+..|+ + .+.|.|.|. |....+++..+..|.... |.. +++
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~---~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~~-~v~ 75 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-G---KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PDV-EVE 75 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-S---EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TTS-EEE
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-C---ceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cce-eee
Confidence 58999995 9999999999999997 2 355544321 111235555555555433 322 333
Q ss_pred EecCc------ccccCCCcEEEEeCC
Q 013466 162 IGINP------YELFEDAEWALLIGA 181 (442)
Q Consensus 162 i~~~~------~eal~dADiVIi~ag 181 (442)
..... .+.++++|+||.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~d~vi~~~d 101 (135)
T PF00899_consen 76 AIPEKIDEENIEELLKDYDIVIDCVD 101 (135)
T ss_dssp EEESHCSHHHHHHHHHTSSEEEEESS
T ss_pred eeecccccccccccccCCCEEEEecC
Confidence 32222 355779999998744
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.053 Score=54.77 Aligned_cols=54 Identities=7% Similarity=-0.033 Sum_probs=38.7
Q ss_pred cEEEecC--cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 159 EVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 159 ~v~i~~~--~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+++++++ .++++++||+||.+. .+|.++-+++-..|.+++.|++++ .||.....
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~ 119 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL 119 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC
Confidence 5666654 568899999999883 235566777777788888778877 77765433
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.032 Score=56.40 Aligned_cols=107 Identities=10% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC---c----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P---- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~---~---- 166 (442)
||||.|+||+|.||++++..|+.. +. .|.. + ++..+... ++... + .+.+. .| +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~--~--~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG--M--DMQTDRLG----DLVNH--P---RMHFFEGDITINKEWI 62 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE--E--eCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHH
Confidence 568999999999999999999875 32 2433 2 33222211 11111 0 12211 11 1
Q ss_pred ccccCCCcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.++++|+||.+++... ....+-......|..-...+.+.+.+. + ..++.++.
T Consensus 63 ~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 63 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 235689999998876432 112233344566777777778777763 2 46665554
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.067 Score=47.46 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+|+ |.+|..++..|...+ .. .+.+. +++.++++..+.++.... ... ...+..+.++++|+
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~---~v~v~----~r~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~Dv 84 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AA---KIVIV----NRTLEKAKALAERFGELG----IAI-AYLDLEELLAEADL 84 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CC---EEEEE----cCCHHHHHHHHHHHhhcc----cce-eecchhhccccCCE
Confidence 568999996 999999999999876 21 25552 555666665555543210 011 12345566899999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||++...+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99986543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.033 Score=54.19 Aligned_cols=96 Identities=19% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi 178 (442)
|.|+||+|.||++++..|+..+. .|... +++.........+ ... . . ......++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~--~~~-~----~-~~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTIL----TRSPPAGANTKWE--GYK-P----W-APLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEEE----eCCCCCCCcccce--eee-c----c-cccchhhhcCCCCEEEE
Confidence 57999999999999999998763 24332 2222221110000 000 0 0 01234578899999999
Q ss_pred eCCcCCCCC--C--cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 179 ~ag~~~kpg--~--~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
.++.+...+ . ....+...|+...+.+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 988654322 1 23456677888899999988875
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.055 Score=47.02 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=42.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|+|++|.+|..++..+....- +.|.-. +++...... ..|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~------~~lv~~-v~~~~~~~~--g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG------FELVGA-VDRKPSAKV--GKDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT------EEEEEE-EETTTSTTT--TSBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC------cEEEEE-EecCCcccc--cchhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 6999999889999999999998543 222211 243331111 1222222100112456667778888899998
Q ss_pred EEe
Q 013466 177 LLI 179 (442)
Q Consensus 177 Ii~ 179 (442)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 865
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.15 Score=48.42 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
|++|.|+||+|++|..++..|+..|. .+.+. +++.+.++....++.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~~~ 46 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA-----RLYLA----ARDVERLERLADDLR 46 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 46899999999999999999998874 24442 444455555555543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.1 Score=52.00 Aligned_cols=116 Identities=13% Similarity=0.029 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~------~~~e 168 (442)
.++|.|+||+|.||++++..|+..|. .+.+...+. +...... .+.... ....++.+. . ...+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~~r~~----~~~~~~~-~~~~~~-~~~~~~~~~~~D~~d~~~~~~ 73 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-----TINATVRDP----KDRKKTD-HLLALD-GAKERLKLFKADLLDEGSFEL 73 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCC----cchhhHH-HHHhcc-CCCCceEEEeCCCCCchHHHH
Confidence 46899999999999999999998874 244422221 2221111 111000 000112211 1 1134
Q ss_pred ccCCCcEEEEeCCcCCCC-CC-cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp-g~-~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+++.|+||..+|..... .. .-...+..|..-...+.+.+.+.. ....|++++-
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~-~~~~iv~~SS 129 (325)
T PLN02989 74 AIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS-SVKRVILTSS 129 (325)
T ss_pred HHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecc
Confidence 567899999998853211 11 123456778877778887776642 2245555553
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.044 Score=54.26 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (442)
+||.|+||+|.+|++++..|+..+. .+... +++.+... ++.+.... .....+. ....+.++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~----~~~~~~~~-~~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRVL----VRPTSDRR----NLEGLDVE-IVEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEEE----EecCcccc----ccccCCce-EEEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998874 24432 33322221 11111000 0000111 11235677899
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||..++.......+.......|......+++.+.+. + -..++.++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-G-VERVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEEEec
Confidence 9999876432222344566778888888888877764 2 225555554
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.05 Score=60.37 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=65.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------ 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------ 165 (442)
++++||.|+||+|.||++++..|... +. .|.. + +++..... ++... + ++.+. .|
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~--l--~r~~~~~~----~~~~~--~---~~~~~~gDl~d~~~ 374 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG--L--DIGSDAIS----RFLGH--P---RFHFVEGDISIHSE 374 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE--E--eCCchhhh----hhcCC--C---ceEEEeccccCcHH
Confidence 34679999999999999999999974 43 1332 1 22221111 11100 0 11111 11
Q ss_pred -cccccCCCcEEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 -PYELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 -~~eal~dADiVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
..++++++|+||..|+... .......+.+..|+.-...+.+++.+. + -.++.++.
T Consensus 375 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 375 WIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 1245789999999877432 222344567788888888888888875 3 35555554
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.086 Score=53.82 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|+||+|.+|..+...|.....- ...|..+..+.+..+.- .+. . ....+..-+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~----~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETL----RFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceE----EEC----C--cceEEEeCchhhccCCC
Confidence 4579999999999999999999985331 13444444443222111 111 1 13444322344568999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999764
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=50.43 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=76.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~~ 167 (442)
+-|.|.||++++|.+++..|+..|. ++.| ..+..++|+.++.++.+.. .+...+.++- ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 3577999999999999999999886 3555 4788899999999998411 0101122211 135
Q ss_pred cccCCCcEEEEeCCcCCCCCC------cHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~------~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..||.-+..-. +=.++++.|++ .++.+.+.+.+. ..+.||+++-
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~S 140 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGS 140 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEecc
Confidence 668899999999886442111 12346677765 345555666663 5778888885
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=51.13 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=60.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhH-HHHHHHHhcccCCCcccEEEecC-ccc-----ccC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l-~g~a~DL~~~~~~~~~~v~i~~~-~~e-----al~ 171 (442)
|.|+||+|.||++++..|+..|. +.+.+. +........ .-...|+.|.. . . .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~----~~v~~~--~~~~~~~~~~~~~~~~~~d~~-~------~-~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI----TDILVV--DNLKDGTKFVNLVDLDIADYM-D------K-EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC----ceEEEe--cCCCcchHHHhhhhhhhhhhh-h------H-HHHHHHHhcccccC
Confidence 68999999999999999998774 124332 211100000 00112222211 0 0 00 011 223
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+|+.+..+..+....+..|......+.+.+.+. + ..++.++-
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~--~~~i~~SS 116 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-E--IPFLYASS 116 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEcc
Confidence 6899999887543333344456788888888888887774 2 35655553
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.27 Score=49.82 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~~e 168 (442)
.+||.|+||+|.||++++..|+..|. .|.+. +++.........++.. ..++.+. .| ..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~ 75 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-----TVHAT----LRDPAKSLHLLSKWKE-----GDRLRLFRADLQEEGSFDE 75 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHhhcc-----CCeEEEEECCCCCHHHHHH
Confidence 46899999999999999999998774 24432 2222222222222211 0122221 11 134
Q ss_pred ccCCCcEEEEeCCcCCCC---C-CcHH-----hHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGP---G-MERA-----GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp---g-~~r~-----dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++.|+||..|+...-. . .+-. ..+..|..-...+.+.+.+. ..-..|++++-
T Consensus 76 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~-~~~~~~v~~SS 138 (353)
T PLN02896 76 AVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS-KTVKRVVFTSS 138 (353)
T ss_pred HHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc-CCccEEEEEec
Confidence 567899999988754211 1 1111 22333445556666666553 11235555553
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.12 Score=52.35 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=77.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCC-C-CCceEEEeccccchhh--hHHHHHHHHhcccCC------CcccEEE
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLG-P-DQPIALKLLGSERSLQ--ALEGVAMELEDSLFP------LLREVKI 162 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~-~-~~~I~L~l~d~d~~~~--~l~g~a~DL~~~~~~------~~~~v~i 162 (442)
.+.+.||+||| +|+=|++++..+...-.-. . +..+....++...+.+ ++..+... .|.... +..++..
T Consensus 18 ~~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~-~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 18 ERDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINS-RHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hcCceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhcc-ccccccccCCccCCCCeEe
Confidence 34568999999 5999999998877543211 1 2356666665444332 22222111 111111 1246777
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc---------hhHHHHHHH
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP---------CNTNALICL 233 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP---------vd~lt~~~~ 233 (442)
.+|..++++|||++|+..- -+.+.+++++|..+-.|++..|-.+.= +..++.++.
T Consensus 96 v~dl~ea~~dADilvf~vP----------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP----------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred cchHHHHhccCCEEEEeCC----------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence 8889999999999999732 255667777777776666666544432 244555555
Q ss_pred HHCCCCCcc
Q 013466 234 KNAPSIPAK 242 (442)
Q Consensus 234 k~s~~~p~k 242 (442)
+.. ++|-.
T Consensus 160 ~~l-gI~~~ 167 (372)
T KOG2711|consen 160 RAL-GIPCS 167 (372)
T ss_pred HHh-CCCce
Confidence 554 34433
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.18 Score=44.43 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=45.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc---------------ccchhhhHHHHHHHHhcccCCCcccEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG---------------SERSLQALEGVAMELEDSLFPLLREVKI 162 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d---------------~d~~~~~l~g~a~DL~~~~~~~~~~v~i 162 (442)
||.|+|+ |++|+.++..|+..|+ + .+.|.|.| .+....+++..+..++... |. .++..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~---~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~-v~i~~ 73 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-G---KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PG-VNVTA 73 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-C---EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CC-cEEEE
Confidence 6899995 9999999999999997 2 25554332 1122234444444444332 21 12222
Q ss_pred ec---Cc---ccccCCCcEEEEeCC
Q 013466 163 GI---NP---YELFEDAEWALLIGA 181 (442)
Q Consensus 163 ~~---~~---~eal~dADiVIi~ag 181 (442)
.. .. .+.+++.|+||.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d 98 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAID 98 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCC
Confidence 11 11 355889999998844
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.14 Score=50.79 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~e 168 (442)
..+|.|+||+|.||++++..|+..|. .+.+... +...........++.... .++.. ..| ..+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~~~R--~~~~~~~~~~~~~l~~~~----~~~~~~~~Dl~d~~~~~~ 74 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY-----TVHAAVQ--KNGETEIEKEIRGLSCEE----ERLKVFDVDPLDYHSILD 74 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEEEEc--CchhhhHHHHHHhcccCC----CceEEEEecCCCHHHHHH
Confidence 35799999999999999999999875 2433211 111122222222221100 11211 111 246
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++++|.|+..++.+........+++..|..-...+.+.+.+..+ -..|++++-
T Consensus 75 ~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~-v~riV~~SS 128 (297)
T PLN02583 75 ALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDT-IEKVVFTSS 128 (297)
T ss_pred HHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCC-ccEEEEecc
Confidence 788999988655433211112345678888888888887776421 134555543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.07 Score=51.09 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---------- 166 (442)
|+|.|+||+|++|..++..|+..|. .+.+. +++.+.++....++.... .-+..-..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~Dl~~~~~i~~~~~~ 67 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIAT----GRRQERLQELKDELGDNL----YIAQLDVRNRAAIEEMLAS 67 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhccce----EEEEecCCCHHHHHHHHHH
Confidence 5799999999999999999998774 24442 455555554433221100 001110111
Q ss_pred -ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+.+.|+||..+|... .|- .+. .+.+..|..- .+.+.+.+.+. ..+.+++++..
T Consensus 68 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 135 (248)
T PRK10538 68 LPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_pred HHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEECCc
Confidence 122357999999887532 221 122 2234555443 44444555442 34567777653
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.26 Score=53.14 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~ 167 (442)
+.+.|-|.||+|.+|+.+...++..+. ..|.+ + ++++-++..+.++|.+.. +. .+.+...+ -.
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p----~~i~l--~--~~~E~~~~~i~~el~~~~-~~-~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP----KEIIL--F--SRDEYKLYLIDMELREKF-PE-LKLRFYIGDVRDRDRVE 318 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC----CEEEE--e--cCchHHHHHHHHHHHhhC-CC-cceEEEecccccHHHHH
Confidence 346899999999999999999998764 23544 3 556677777778887642 21 12222222 25
Q ss_pred cccCC--CcEEEEeCCcCCCCCCcH--HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC----CchhHHH
Q 013466 168 ELFED--AEWALLIGAKPRGPGMER--AGLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kpg~~r--~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt----NPvd~lt 229 (442)
.++++ .|+|+.+|..-.-|-++. .+-...|+-=-.+++++..+. +-...|++-| ||.|+|.
T Consensus 319 ~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 319 RAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 67888 999999998777776654 455666665566677766664 3455555544 7777664
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.31 Score=49.04 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c--Ccc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I--NPY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~--~~~----e 168 (442)
.+||.|+||+|.+|++++..|+..+. .|.+............. ...++.... . .++... . .+. +
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~~~~~D~~~~~~l~~ 75 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY-----KVVVIDNLDNSSEEALR-RVKELAGDL-G--DNLVFHKVDLRDKEALEK 75 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEEeCCCcchHHHHH-HHHHhhccc-C--ccceEEecCcCCHHHHHH
Confidence 46999999999999999999998773 24332110010111111 111111000 0 111111 1 112 2
Q ss_pred ccC--CCcEEEEeCCcCCC-CC-CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFE--DAEWALLIGAKPRG-PG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~--dADiVIi~ag~~~k-pg-~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++ +.|+||.+++.... .. ......+..|......+.+.+.+. +. ..++.++.
T Consensus 76 ~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~Ss 132 (352)
T PLN02240 76 VFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GC-KKLVFSSS 132 (352)
T ss_pred HHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEcc
Confidence 233 68999998875421 11 234556788888888888877663 22 24555654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.29 Score=46.40 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|.+|..++..|+..|. .+.+ .+++.+.+.....++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-----RVVV----TDRNEEAAERVAAEIL 50 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHh
Confidence 46899999999999999999998874 2444 2555555554544444
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=52.91 Aligned_cols=72 Identities=26% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|+||+|.+|..++..|...+.- .+.|..+-.+.+.. ...++.. ..+.+..-+..+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~~g----~~l~~~g------~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARSAG----KELSFKG------KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEccccCC----CeeeeCC------ceeEEeeCCHHHHcCCCE
Confidence 479999999999999999999885431 12232232222211 1111111 123333223356789999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 999866
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.29 Score=48.90 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.++++....++.... .+ ...++. ..
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~~----~R~~~~~~~~~~~l~~v~-~~--~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIVP----ARRPDVAREALAGIDGVE-VV--MLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhhCe-EE--EccCCCHHHHHHHHHHH
Confidence 35899999999999999999999874 24442 445555554444443211 00 111110 00
Q ss_pred ccccCCCcEEEEeCCcCCCCCC---c-HHhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPRGPGM---E-RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~---~-r~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+||..+|....+.. + -...+..|. .+.+.+.+.+.+. ..+.|++++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1223578999999885432211 1 122344443 3455666666653 3467777764
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.26 Score=46.72 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||..++..|+..|. .+.+. +++.+.+.....++.... .++.+. .| +.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-----TVAFN----DGLAAEARELAAALEAAG----GRAHAIAADLADPASVQR 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 36899999999999999999998774 24442 445555555555554221 122221 11 121
Q ss_pred -------ccCCCcEEEEeCCcC
Q 013466 169 -------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 -------al~dADiVIi~ag~~ 183 (442)
.+...|+||..+|..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 74 FFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 125789999988754
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.071 Score=54.03 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--CcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~dA 173 (442)
++||+|+||+|.||+.+...|.... |.- ..+.++-+.++..+ ...++..- ...+.. -+..+++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~---~~~~~~AS~rSaG~---~~~~f~~~------~~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPF---EELVLLASARSAGK---KYIEFGGK------SIGVPEDAADEFVFSDV 67 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCc---ceEEEEecccccCC---ccccccCc------cccCccccccccccccC
Confidence 4699999999999999999999853 221 12444444443221 11222211 112212 356778899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|++++|
T Consensus 68 Divf~~ag 75 (334)
T COG0136 68 DIVFFAAG 75 (334)
T ss_pred CEEEEeCc
Confidence 99999876
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.11 Score=52.76 Aligned_cols=113 Identities=12% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|... +++..........+... . ++. +..| + .+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~--~---~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYGY----SLDPPTSPNLFELLNLA--K---KIEDHFGDIRDAAKLRK 69 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEEE----eCCCccchhHHHHHhhc--C---CceEEEccCCCHHHHHH
Confidence 46899999999999999999998773 24332 22222211111111100 0 111 1111 1 23
Q ss_pred ccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+++ .|+||.+++.+... ..+-...+..|..-...+.+.+.+. +....++++|.
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 3443 59999988854211 1123456677888788888877664 22345666664
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.084 Score=50.31 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc--------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~--------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
..||+|||+ |++|+.++..|+..|+- .+.|.|.|. |....+++..+..|.... +. .++.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~-v~v~ 100 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVG----NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PF-VEIE 100 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC----eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CC-CEEE
Confidence 469999995 99999999999999972 266655431 112235554444444332 21 1222
Q ss_pred Ee-----cC-cccccCCCcEEEEeC
Q 013466 162 IG-----IN-PYELFEDAEWALLIG 180 (442)
Q Consensus 162 i~-----~~-~~eal~dADiVIi~a 180 (442)
.. .. ..+.++++|+||.+.
T Consensus 101 ~~~~~i~~~~~~~~~~~~DvVI~a~ 125 (212)
T PRK08644 101 AHNEKIDEDNIEELFKDCDIVVEAF 125 (212)
T ss_pred EEeeecCHHHHHHHHcCCCEEEECC
Confidence 21 11 125678999998773
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.4 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|.||++++..|+..|.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999998774
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.37 Score=45.35 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=32.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.+|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+.....++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY-----KVAI----TARDQKELEEAAAELN 51 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-----EEEE----eeCCHHHHHHHHHHHh
Confidence 5899999999999999999998764 2444 2445555554555554
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.39 Score=46.50 Aligned_cols=114 Identities=14% Similarity=-0.027 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (442)
.++|.|+||+|+||..++..|+..|. .+.+. +++.+.++....++....+ ....++. .-
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~~---~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAIG----DLDEALAKETAAELGLVVG---GPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhccceE---EEccCCCHHHHHHHHHHH
Confidence 35899999999999999999998774 24442 4555665544444431110 0011110 01
Q ss_pred ccccCCCcEEEEeCCcCCCCC-C--c---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPRGPG-M--E---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg-~--~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+.+.|++|..+|...... . + -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 122457899999988643211 1 1 1223445543 444455555552 4567777764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.18 Score=48.16 Aligned_cols=114 Identities=17% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e---- 168 (442)
.++|.|+||+|.||.+++..|+..|. .+.+. +++.+..+....++.+.. .++. +..| +.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 73 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-----AVAIA----DLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNA 73 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEE----eCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHH
Confidence 46899999999999999999999875 25442 444555554555554321 1222 1221 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C-----CCcHHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPRG-P-----GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p-----g~~r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|.... + ..+-.+.+..|..- .+.+.+.+.+.. ..+.|++++-
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss 144 (262)
T PRK13394 74 GIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGS 144 (262)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcc
Confidence 22458999998875321 1 11122334455443 555555552222 4456666663
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.25 Score=48.24 Aligned_cols=46 Identities=22% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+++|.|+||+|+||++++..|+..|. .+.+. +++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVLA----DVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHHH
Confidence 36899999999999999999999874 24442 445555565555554
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=51.74 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=39.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC---C
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d---A 173 (442)
|||+||| .|.+|..++..|...+. +|.++ |++.++++.. .+. ......+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v~----dr~~~~~~~~----~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVGY----DVNQEAVDVA----GKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHH----HHC------CCeecCCHHHHHHhCCCC
Confidence 4899999 59999999999998764 24443 5555554432 111 12233333444444 6
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+||++.
T Consensus 61 dvVi~~v 67 (299)
T PRK12490 61 RTIWVMV 67 (299)
T ss_pred CEEEEEe
Confidence 8998873
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.1 Score=55.09 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+++||.|+||+|.||++++..|+..|.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 356899999999999999999998774
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.14 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++||+|+||+|.+|..+...|...+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 456999999999999999999998854
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.28 Score=54.67 Aligned_cols=93 Identities=23% Similarity=0.185 Sum_probs=53.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-ED 172 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~d 172 (442)
.+++||+||| .|.+|..++..|...|. .|..+ +++.... .+.++ . +....+..+.+ ++
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~~----dr~~~~~--~A~~~-----G----v~~~~d~~e~~~~~ 108 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH-----TVLAH----SRSDHSL--AARSL-----G----VSFFLDPHDLCERH 108 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHH--HHHHc-----C----CEEeCCHHHHhhcC
Confidence 4467999999 59999999999998763 24442 3332221 22221 1 22333444434 57
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHH-hhhCCCeEEEEeCC
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN-AVASRNVKVIVVGN 223 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~-~~a~p~a~vivvtN 223 (442)
||+||++.- ...+.++.+.+. .+..++++|+.++.
T Consensus 109 aDvViLavP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~S 144 (667)
T PLN02712 109 PDVILLCTS----------------IISTENVLKSLPLQRLKRNTLFVDVLS 144 (667)
T ss_pred CCEEEEcCC----------------HHHHHHHHHhhhhhcCCCCeEEEECCC
Confidence 999999833 122333333332 22346778887764
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.092 Score=50.79 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~ 50 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-----RVAIV----DIDADNGAAVAASL 50 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHh
Confidence 35899999999999999999999875 25553 44545455444433
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.35 Score=45.83 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
..+|.|+||+|+||+.++..|+..+. .+.+. +++.+.......++.... .++.+. .| +.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~ 69 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA-----KVAVF----DLNREAAEKVAADIRAKG----GNAQAFACDITDRDSVDT 69 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEe----cCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999774 25442 344455554444443221 112211 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHH----HHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQG----KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~----~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|...... .+. ...+..|..-...+. +.+.+. ..+.+++++.
T Consensus 70 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~iss 139 (250)
T TIGR03206 70 AVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER--GAGRIVNIAS 139 (250)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEECc
Confidence 1235899999887532111 122 223555655444443 344342 3456666664
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.089 Score=53.54 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+||| .|.||..++..|...|. .|..+ |++.+... +. .....+..+.+++||+|
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~~----d~~~~~~~----~~----------~~~~~~l~ell~~aDiV 202 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGFGA-----TITAY----DAYPNKDL----DF----------LTYKDSVKEAIKDADII 202 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEEE----eCChhHhh----hh----------hhccCCHHHHHhcCCEE
Confidence 5899999 59999999999987553 24443 33322211 00 11223457889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++... ... .+..++. ...+.. .++++++|+++=
T Consensus 203 il~lP-----~t~------~t~~li~--~~~l~~-mk~gavlIN~aR 235 (330)
T PRK12480 203 SLHVP-----ANK------ESYHLFD--KAMFDH-VKKGAILVNAAR 235 (330)
T ss_pred EEeCC-----CcH------HHHHHHh--HHHHhc-CCCCcEEEEcCC
Confidence 98733 111 1112221 122333 357889998883
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=55.30 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--- 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--- 171 (442)
.+.+|++|| .|.+|..++..|+..|. ++.++ |++.++.+..+..... . .. ..+....+..+..+
T Consensus 5 ~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V~----NRt~~k~~~l~~~~~~-~-Ga-~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 5 ALSRIGLAG-LAVMGQNLALNIAEKGF-----PISVY----NRTTSKVDETVERAKK-E-GN-LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEEE----CCCHHHHHHHHHhhhh-c-CC-cccccCCCHHHHHhcCC
Confidence 467899999 79999999999999885 35553 5565665544321111 0 00 01122233334333
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+|+||+.... .+.+.++...+.....++.++|..||-
T Consensus 72 ~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 72 KPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 49999987321 233444433344433467788888864
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.25 Score=55.49 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=56.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||| .|.+|..++..|...+... .|..+ |++.++++. +.++. . ......+..++++++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~---~V~~~----d~~~~~~~~-a~~~g--~-----~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAR---EVVAV----DRRAKSLEL-AVSLG--V-----IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCC---EEEEE----ECChhHHHH-HHHCC--C-----CCcccCCHHHHhcCCCEE
Confidence 6899999 5999999999999877421 24443 444444432 22211 1 001223445678999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++... +.+.++.+.+..+.+++.+|+.++.
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~s 98 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVGS 98 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcCC
Confidence 998541 2344555555555445666655543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=53.75 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+.|.+|..++..|...|. ++.++ |++. . ....+.+++||+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~-----~V~~~----d~~~---------~--------------~~~~~~~~~aDl 145 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY-----QVRIL----EQDD---------W--------------DRAEDILADAGM 145 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC-----eEEEe----CCCc---------c--------------hhHHHHHhcCCE
Confidence 47999999679999999999999874 25553 2210 0 112456789999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||++.-. ....+++ +.+.. ..|+++|+-++-
T Consensus 146 VilavP~------------~~~~~~~----~~l~~-l~~~~iv~Dv~S 176 (374)
T PRK11199 146 VIVSVPI------------HLTEEVI----ARLPP-LPEDCILVDLTS 176 (374)
T ss_pred EEEeCcH------------HHHHHHH----HHHhC-CCCCcEEEECCC
Confidence 9998431 1113334 33444 357888877764
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.12 Score=48.14 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc----cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----YELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~----~eal 170 (442)
..||.|+||+|.+|..++..|+..+. .+.+ .+++.++++..+.++.+.. . ..+... ..+ .+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l----~~R~~~~~~~l~~~l~~~~-~--~~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL----VGRDLERAQKAADSLRARF-G--EGVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhhc-C--CcEEEeeCCCHHHHHHHH
Confidence 46999999889999999999998662 2544 2566677776666554221 1 122221 112 4678
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
+++|+||.+..
T Consensus 96 ~~~diVi~at~ 106 (194)
T cd01078 96 KGADVVFAAGA 106 (194)
T ss_pred hcCCEEEECCC
Confidence 99999887644
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.12 Score=48.82 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .+.|.|.|. |....+++..+..|.... |.. ++
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~----~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~i 93 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVG----TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDI-QV 93 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCC----eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCC-EE
Confidence 469999995 99999999999999962 255544331 111234555555555432 221 22
Q ss_pred EEec------CcccccCCCcEEEEeCC
Q 013466 161 KIGI------NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~------~~~eal~dADiVIi~ag 181 (442)
.... +..+.++++|+||.+..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~D~Vi~~~d 120 (202)
T TIGR02356 94 TALKERVTAENLELLINNVDLVLDCTD 120 (202)
T ss_pred EEehhcCCHHHHHHHHhCCCEEEECCC
Confidence 2211 11345889999988744
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.54 Score=45.60 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----- 168 (442)
..+.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... + .++.. ..| +.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-----DVILL----SRNEENLKKAREKIKSES-N--VDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHHH
Confidence 4689999999999999999999884 25553 445556665555554221 1 01111 111 111
Q ss_pred -----ccCCCcEEEEeCCcCCCC---CCcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -----LFEDAEWALLIGAKPRGP---GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -----al~dADiVIi~ag~~~kp---g~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.+... ..+.. ..+..| ..+.+.+.+.+.+. ..+.||+++-.
T Consensus 77 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS~ 145 (263)
T PRK08339 77 VKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTSV 145 (263)
T ss_pred HHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCc
Confidence 124579999988865321 12221 223344 34566666776653 35677777653
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.075 Score=55.82 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+|+ |.+|..++..|...|.. .|.+ .+++.+++...+.++... .....+..+.+.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~~-------~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGGE-------AVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCCe-------EeeHHHHHHHHhhCCE
Confidence 469999996 99999999999987742 2555 255556666555544311 1111245678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
||.+.+.|. |-.+. +.+.. ....-....+++-+++|-|+=
T Consensus 244 Vi~aT~s~~-~ii~~--------e~l~~----~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 244 VISSTGAPH-PIVSK--------EDVER----ALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EEECCCCCC-ceEcH--------HHHHH----HHhcCCCCeEEEEeCCCCCCC
Confidence 999866443 11111 11211 111101246899999997654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.5 Score=47.07 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|..... +....+.. ..+.... ....++.+... ..+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~~r----~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 73 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY-----TVKATVR----DLTDRKKT-EHLLALD-GAKERLKLFKADLLEESSFEQ 73 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEEC----CCcchHHH-HHHHhcc-CCCCceEEEecCCCCcchHHH
Confidence 35899999999999999999998774 2433211 11111111 1111100 00012222111 234
Q ss_pred ccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhhhCCCe-EEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~a~p~a-~vivvt 222 (442)
+++++|+||.+|+... +.. ...+++..|..-...+.+.+.+. ++. .||.++
T Consensus 74 ~~~~~d~vih~A~~~~-~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 74 AIEGCDAVFHTASPVF-FTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HHhCCCEEEEeCCCcC-CCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 5778999999987432 111 22345677877777777776653 222 455554
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.12 Score=52.44 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=52.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+...+++|||+ |.+|...+..|....-+ +.|.++ +++.++++..+.++.+. . .++....+..+++++|
T Consensus 126 ~~~~~lgiiG~-G~qA~~~l~al~~~~~~---~~v~V~----~r~~~~~~~~~~~~~~~--g--~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 126 KDSSVLGIIGA-GRQAWTQLEALSRVFDL---EEVSVY----CRTPSTREKFALRASDY--E--VPVRAATDPREAVEGC 193 (325)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCC---CEEEEE----CCCHHHHHHHHHHHHhh--C--CcEEEeCCHHHHhccC
Confidence 34579999995 99999877666553222 345553 66777777777766532 1 2466667788999999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+.+-
T Consensus 194 DiVitaT 200 (325)
T TIGR02371 194 DILVTTT 200 (325)
T ss_pred CEEEEec
Confidence 9999853
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.24 Score=47.09 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.47 Score=45.51 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe---cCcccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~---~~~~ea--- 169 (442)
.++|.|+||+|.||++++..|+..|. .+.+. +++.+.++....++.... .++.+. ..+.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~i~~~~----~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA-----RVVLS----ARKAEELEEAAAHLEALG----IDALWIAADVADEADIER 78 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 24442 444455554444443211 111111 112222
Q ss_pred --------cCCCcEEEEeCCcCCCCCC------cHHhHHHHHHHHHHHHHHHHHhh---hCCCeEEEEeCC
Q 013466 170 --------FEDAEWALLIGAKPRGPGM------ERAGLLDINGQIFAEQGKALNAV---ASRNVKVIVVGN 223 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~kpg~------~r~dll~~N~~Ii~~i~~~I~~~---a~p~a~vivvtN 223 (442)
+...|.||..+|....... .-...+..|..-...+.+.+..+ ..+.+.+++++.
T Consensus 79 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 79 LAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 2467999998875321111 11233456655455555444332 123466777765
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.17 Score=49.40 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+++|.|+||+|+||.+++..|+..|.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~ 29 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH 29 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC
Confidence 45799999999999999999998774
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.13 Score=51.32 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=39.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---CC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---dA 173 (442)
|||+||| .|.+|..++..|+..+. ++.++ |+++++++.. .+. .+....+..+.++ ++
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~-----~v~v~----dr~~~~~~~~----~~~------g~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH-----EVVGY----DRNPEAVEAL----AEE------GATGADSLEELVAKLPAP 60 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHH----HHC------CCeecCCHHHHHhhcCCC
Confidence 4899999 59999999999998774 25553 5555555433 111 1223233333444 46
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+||++
T Consensus 61 dvvi~~ 66 (301)
T PRK09599 61 RVVWLM 66 (301)
T ss_pred CEEEEE
Confidence 998886
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.11 Score=50.78 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=59.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC--CcE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--ADi 175 (442)
||.|+||+|.||++++..|...|. ++.. + ++. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~--~--~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA--L--TSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE--e--CCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999998763 2433 1 221 12222111 11233444 499
Q ss_pred EEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.+++....+. .....++..|......+++.+.+. + ..++.++.
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~Ss 100 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIST 100 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEee
Confidence 999887543222 134456778888888888887764 2 25555553
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.097 Score=55.80 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=59.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc---cccCCCc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY---ELFEDAE 174 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~---eal~dAD 174 (442)
+|+||| .|.+|..++..|+..|. +|.++ |++.++++....+.... ..+....+.. +.++.+|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v~----drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSVY----NRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEEE----eCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999885 25553 55656665443211100 0122222222 2456789
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC--chhHHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN--Pvd~lt 229 (442)
+||+..-. .+.+.++...+..+..++.+||..+| |.++..
T Consensus 66 vIil~v~~---------------~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~ 107 (467)
T TIGR00873 66 KIMLMVKA---------------GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTER 107 (467)
T ss_pred EEEEECCC---------------cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHH
Confidence 88886321 13344444555554446778898987 555443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.61 Score=44.02 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~ea--- 169 (442)
.++|.|+||+|++|..++..|+..|. .+.+......++.+.++....++.... .++.+. .| +.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA-----DVIVLDIHPMRGRAEADAVAAGIEAAG----GKALGLAFDVRDFAATRA 76 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEEcCcccccHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 244422112223344443433332211 122221 11 1211
Q ss_pred --------cCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHHHHHHHHHHHH----hhhCCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGKALN----AVASRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~Ii~~i~~~I~----~~a~p~a~vivvtNP 224 (442)
....|.||..+|... ++- .+. ...+..|..-...+.+.+. +.. ....+++++-.
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~ 148 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVNIASV 148 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEEECCc
Confidence 246899999888543 111 111 2245566665555665554 111 23456666543
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.29 Score=47.14 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch----hhh---HHHHHHHHhcccCCCcccEEEecCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS----LQA---LEGVAMELEDSLFPLLREVKIGINPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~----~~~---l~g~a~DL~~~~~~~~~~v~i~~~~~e 168 (442)
-.||.|+|| |.+|..++..|...|+-. +.|.+. |++ .++ +.....++.+.. .. .. ...+..+
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~iv----dr~gl~~~~r~~~L~~~~~~la~~~-~~-~~--~~~~l~~ 93 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIVVV----DSKGVIYEGREDDLNPDKNEIAKET-NP-EK--TGGTLKE 93 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEEEE----eCCCccccccchhhhHHHHHHHHHh-cc-Cc--ccCCHHH
Confidence 369999996 999999999999887620 136553 333 222 222222222111 00 01 1123458
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+++++|+||-+.+ +|+-- .++.+.+. ++.+++.++||..
T Consensus 94 ~l~~~dvlIgaT~----~G~~~-----------~~~l~~m~----~~~ivf~lsnP~~ 132 (226)
T cd05311 94 ALKGADVFIGVSR----PGVVK-----------KEMIKKMA----KDPIVFALANPVP 132 (226)
T ss_pred HHhcCCEEEeCCC----CCCCC-----------HHHHHhhC----CCCEEEEeCCCCC
Confidence 8899999988754 45411 12222222 4567777889964
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.44 Score=45.35 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
..+|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.... .++.+ ..| +.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 70 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQKAG----GKAIGVAMDVTDEEAINA 70 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999998774 2444 2455555555555553211 11211 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+.+.|+||..+|.... +. .+. .+.+..|.. +++.+.+.+.+. ....|++++.
T Consensus 71 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~iss 140 (258)
T PRK12429 71 GIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ--GGGRIINMAS 140 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 123468999998875321 11 111 122333433 255555555553 3456666664
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.061 Score=55.63 Aligned_cols=54 Identities=20% Similarity=0.056 Sum_probs=35.1
Q ss_pred ceeeEEeecccchHH-h--hhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 75 YGVFCLTYDLKAEEE-T--KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 75 ~~v~~~~~~~~~~~~-~--~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
=+||+-.--+..... . ...-+..||+|||+ |++|+.++..|+..|+ + +|.|.|.
T Consensus 152 ~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~-GG~GS~Va~~LAR~GV-g---eI~LVD~ 208 (393)
T PRK06153 152 DSVFNYPDTASSRAGIGALSAKLEGQRIAIIGL-GGTGSYILDLVAKTPV-R---EIHLFDG 208 (393)
T ss_pred CCceehhhhhccccChHHHHHHHhhCcEEEEcC-CccHHHHHHHHHHcCC-C---EEEEECC
Confidence 478875433333311 0 11123469999995 9999999999999997 2 3666443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.51 Score=45.69 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (442)
++|.|+||+|+||..++..|+..|. .+.+. +++.+.++....++.... .++. +..| +.+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-----RLALA----DVNEEGGEETLKLLREAG----GDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHH
Confidence 3689999999999999999999875 25443 344455555544454221 1111 1111 111
Q ss_pred ------ccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.|++++.
T Consensus 68 ~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~vsS 136 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ--KSGRIVNIAS 136 (270)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 22468999998885431 1 1111 123455533 344444555553 3456666664
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.041 Score=52.90 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc-----cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-----YELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~-----~eal 170 (442)
|+|+|+|| |.+|++++..|...|. .+.+ +|.++++++....|-.+. .+... ..+ ..-+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999999874 3556 355556655432221111 12221 112 2348
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.++|.++.+-|
T Consensus 65 ~~aD~vva~t~ 75 (225)
T COG0569 65 DDADAVVAATG 75 (225)
T ss_pred CcCCEEEEeeC
Confidence 88999988744
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.65 Score=44.40 Aligned_cols=113 Identities=18% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
..++.|+||+|+||..++..|+..|. .+.+. +++.+.++....++.+.. .++.. ..| +.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-----KVVVG----ARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35899999999999999999999874 24442 455566666655554321 11211 111 11
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~--~kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.. ..+- .+. ...+..|.. ..+.+.+.+.+. ..+.+++++.
T Consensus 73 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 73 LVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1234689999988853 2221 122 233555643 444555555552 3566766664
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.39 Score=46.41 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Ccccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~ea--- 169 (442)
..+|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.+ .. .+++.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA-----DVLIA----ARTESQLDEVAEQIRAAG----RRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 46899999999999999999998774 24442 445555555555554211 11221 11 12222
Q ss_pred --------cCCCcEEEEeCCcCCC-C-C-Cc---HHhHHHHHHHHHHHHH----HHHHhhhCCCeEEEEeCC
Q 013466 170 --------FEDAEWALLIGAKPRG-P-G-ME---RAGLLDINGQIFAEQG----KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~k-p-g-~~---r~dll~~N~~Ii~~i~----~~I~~~a~p~a~vivvtN 223 (442)
+...|+||..+|.... + . .+ -.+.+..|..-...+. +.+.+.. ..+.+++++.
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~g~iv~~sS 147 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHS-GGGSVINISS 147 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhc-CCeEEEEEcc
Confidence 3468999998875321 1 1 11 1233445544333333 3333322 4566777765
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.62 Score=44.19 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhhHHHHHHHHhcccCCCcccEE-EecC--c-------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~-~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------- 166 (442)
||.|+||+|+||.+++..|+..|. .+.+. +++ .+.++....++.+.... ..+. +..| +
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~ 69 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFLT----DINDAAGLDAFAAEINAAHGE--GVAFAAVQDVTDEAQWQAL 69 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCcchHHHHHHHHHHhcCCC--ceEEEEEeecCCHHHHHHH
Confidence 589999999999999999998774 24442 333 34455554444322100 0011 1111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|+||..+|...... .+ -...+..|.. ..+.+.+.+.+. ..+.|++++..
T Consensus 70 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss~ 139 (251)
T PRK07069 70 LAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISSV 139 (251)
T ss_pred HHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecCh
Confidence 122456899999888543211 11 1234556665 566666776653 34566666643
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.25 Score=48.79 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|||+ |.||..++..|... ..+ +.+.-+ .|++.++++..+..+.. .....+..+.+.++|
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~-~~~----~el~aV-~dr~~~~a~~~a~~~g~--------~~~~~~~eell~~~D 69 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRG-LPG----LTLSAV-AVRDPQRHADFIWGLRR--------PPPVVPLDQLATHAD 69 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhc-CCC----eEEEEE-ECCCHHHHHHHHHhcCC--------CcccCCHHHHhcCCC
Confidence 4589999995 99999999988764 111 222211 24555555544332210 112244556678899
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|++++.
T Consensus 70 ~Vvi~tp 76 (271)
T PRK13302 70 IVVEAAP 76 (271)
T ss_pred EEEECCC
Confidence 9999865
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.19 Score=51.15 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|||. |.+|.+++..|...|+ ++.+.+. ...+....+.+. . +.. .+..++++.||
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~-----~Vvv~~r----~~~~s~~~A~~~-----G----~~~-~s~~eaa~~AD 75 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV-----DVVVGLR----EGSKSWKKAEAD-----G----FEV-LTVAEAAKWAD 75 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC-----EEEEEEC----CchhhHHHHHHC-----C----Cee-CCHHHHHhcCC
Confidence 3468999995 9999999999998875 2443221 111112122211 1 122 25678899999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+|+++.
T Consensus 76 VVvLaV 81 (330)
T PRK05479 76 VIMILL 81 (330)
T ss_pred EEEEcC
Confidence 999973
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.096 Score=52.05 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=58.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
|||.|+||+|.||++++..|...+. +.. + ++.... ...|+.+.. ...+.++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~--~--~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA--L--DVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE--e--cccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 5899999999999999999987662 322 1 221110 111222111 1123344 489
Q ss_pred EEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 175 iVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+||.+++..... ..+.......|+.-...+++.+.+. + .+++.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999988753211 1223334567888888888888774 2 3555555
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.23 Score=46.75 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=46.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-----------------ccchhhhHHHHHHHHhcccCCCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-----------------SERSLQALEGVAMELEDSLFPLLRE 159 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d-----------------~d~~~~~l~g~a~DL~~~~~~~~~~ 159 (442)
.||.|+|+ |++|+.++..|+..|+ + .+.|.|.| .|....+++..+..|.+.. |.. +
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV-g---~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN-p~v-~ 92 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI-D---SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN-PNV-K 92 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-C---EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC-CCC-E
Confidence 59999995 9999999999999997 2 35554433 1112234444444454433 321 2
Q ss_pred EEEec--------CcccccCCCcEEEEeC
Q 013466 160 VKIGI--------NPYELFEDAEWALLIG 180 (442)
Q Consensus 160 v~i~~--------~~~eal~dADiVIi~a 180 (442)
+.... +..+-++++|+||.+.
T Consensus 93 i~~~~~~~~~~~~~~~~~~~~~dvVi~~~ 121 (198)
T cd01485 93 LSIVEEDSLSNDSNIEEYLQKFTLVIATE 121 (198)
T ss_pred EEEEecccccchhhHHHHHhCCCEEEECC
Confidence 32211 1234578999999773
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.21 Score=50.46 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCce-EEEecccc-chhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I-~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.++|+| ||+|.||..+...|-+++. . + .|+++.+. +. .|. ...+. ..++.+..-+.+++++.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f-p----v~~l~l~~s~~~s----~gk-----~i~f~-g~~~~V~~l~~~~f~~v 66 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL-E----IEQISIVEIEPFG----EEQ-----GIRFN-NKAVEQIAPEEVEWADF 66 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC-c----hhheeeccccccc----CCC-----EEEEC-CEEEEEEECCccCcccC
Confidence 368999 9999999999999998885 2 2 24444332 11 111 11111 13556655567799999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|++++ +|
T Consensus 67 Dia~f-ag 73 (322)
T PRK06901 67 NYVFF-AG 73 (322)
T ss_pred CEEEE-cC
Confidence 99999 65
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.36 Score=46.36 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
+++|.|+||+|+||..++..|++.|. .+.+ .+++.+.++....++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-----TLGL----VARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHhc
Confidence 35899999999999999999998774 2444 244555555444444
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.19 Score=49.71 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|| |++|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|+
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~Di 188 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFDL 188 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCCE
Confidence 468999996 99999999999987752 2555 3667777777766654221 12221233577899999
Q ss_pred EEEeCCcCC
Q 013466 176 ALLIGAKPR 184 (442)
Q Consensus 176 VIi~ag~~~ 184 (442)
||.+.....
T Consensus 189 vInaTp~g~ 197 (278)
T PRK00258 189 IINATSAGM 197 (278)
T ss_pred EEECCcCCC
Confidence 998754433
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.54 Score=47.40 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~ 151 (442)
...+.|+||+|+||.+++..|+..|. .|.+ .+++.++++..+.++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 45788999999999999999999875 2555 36677788877777753
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.48 Score=44.48 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+++|.|+||+|.+|..++..|+..|. .+.+ .+++.+.++....++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA-----KVVI----YDSNEEAAEALAAELR 50 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCChhHHHHHHHHHH
Confidence 46899999999999999999998775 2433 2455555554444444
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.037 Score=54.87 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=78.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCCC--CceEEEeccccc--hhhh--HHHHHHHHhcccCCCcccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~----~l~~~~--~~I~L~l~d~d~--~~~~--l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (442)
.||.|.|| |..|..++..|+.. |+-.++ +.|.+ +|.+- ..++ +...-..+.+.. . . ....+.
T Consensus 26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~--vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L 97 (279)
T cd05312 26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWL--VDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSL 97 (279)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEE--EcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCH
Confidence 69999996 99999999988876 642111 23433 33321 0111 222222222111 0 0 123567
Q ss_pred ccccC--CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCCCc
Q 013466 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPA 241 (442)
Q Consensus 167 ~eal~--dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~p~ 241 (442)
.|+++ ++|++|=+.+. +|. +-+++.+.|.+++ ++.+|+-.+||. +....-+++.+.+ +
T Consensus 98 ~e~i~~v~ptvlIG~S~~---~g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~ 160 (279)
T cd05312 98 LEVVKAVKPTVLIGLSGV---GGA-----------FTEEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKWTDG--R 160 (279)
T ss_pred HHHHHhcCCCEEEEeCCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCcCCccccCHHHHHHhhcC--C
Confidence 89999 89998866542 231 2245666677775 889999999997 4566666666533 3
Q ss_pred ceeeccchhhHHH
Q 013466 242 KNFHALTRLDENR 254 (442)
Q Consensus 242 kvig~gT~LDs~R 254 (442)
.+|++|+-.+...
T Consensus 161 ai~ATGsPf~pv~ 173 (279)
T cd05312 161 ALFASGSPFPPVE 173 (279)
T ss_pred EEEEeCCCCCCee
Confidence 5788887655443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.66 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.48 Score=46.91 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~------ 167 (442)
.+|.|+||+|+||..++..|+..|. .|.+ .+++.+.++....++.... ..+. +..| +.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRITRAG----GDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 5899999999999999999998874 2544 2555666665555553211 0111 1111 11
Q ss_pred -----cccCCCcEEEEeCCcCC-CCCCc----H---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPR-GPGME----R---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~-kpg~~----r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|+||..+|... .+-.+ . ...+..|. .+.+.+.+.+.+. ..+.+++++.
T Consensus 108 ~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 178 (293)
T PRK05866 108 VADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER--GDGHIINVAT 178 (293)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 12347899999887542 11111 1 12344443 2344555555553 3456666664
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.37 Score=46.13 Aligned_cols=47 Identities=23% Similarity=0.174 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~ 151 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.+.....++.+
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-----~vvl~----~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-----EIIIN----DITAERAELAVAKLRQ 55 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-----EEEEE----cCCHHHHHHHHHHHHh
Confidence 45899999999999999999998774 25452 4455556555555543
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.16 Score=51.62 Aligned_cols=75 Identities=21% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |..|...+..+....-+. .|.++ +++.++++..+.++++.. + ..+....+..+++++||
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~---~V~v~----~R~~~~a~~l~~~~~~~~-g--~~v~~~~d~~~al~~aD 199 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPIR---EVRVW----ARDAAKAEAYAADLRAEL-G--IPVTVARDVHEAVAGAD 199 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCC---EEEEE----cCCHHHHHHHHHHHhhcc-C--ceEEEeCCHHHHHccCC
Confidence 3569999995 999999888777532222 36663 677788888887775321 1 23455556678899999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+|+.+.
T Consensus 200 iVi~aT 205 (330)
T PRK08291 200 IIVTTT 205 (330)
T ss_pred EEEEee
Confidence 998863
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.089 Score=55.23 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|||| |.+|..++..|...|.- .|.+ .+++.++++.++..+... .+....+.++.+.+||+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~~------~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRNA------SAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcCC------eEecHHHHHHHhccCCE
Confidence 368999995 99999999999987752 3555 477777777666654311 12222344788999999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99986655
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.15 Score=48.26 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+..+|.|+||+|.+|++++..|+..|.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999999875
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.64 Score=44.41 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
.++.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.+.. .++.. ..| +
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~ 69 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF-----KVAIV----DYNEETAQAAADKLSKDG----GKAIAVKADVSDRDQVFAA 69 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEECCCCCHHHHHHH
Confidence 4788999999999999999998874 24442 444455555555554321 01111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-CCCC--cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR-GPGM--ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~-kpg~--~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|+||.++|... .+.. +. ...+..|.. +.+.+.+.+.+. .+++.+++++..
T Consensus 70 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~ 140 (256)
T PRK08643 70 VRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKL-GHGGKIINATSQ 140 (256)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCCEEEEECcc
Confidence 122346899999887532 2211 11 223444543 233334444442 245677777753
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.094 Score=50.54 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++||.|+||+|.+|..++..|+..+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 467999999999999999999998763
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.26 Score=51.58 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal~ 171 (442)
.++|.|+||+|++|.+++..|+..|. .+.+. +++.+.+... +.+..... ..+..-..+ .+.+.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~l----~r~~~~l~~~---~~~~~~~v-~~v~~Dvsd~~~v~~~l~ 244 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA-----KVVAL----TSNSDKITLE---INGEDLPV-KTLHWQVGQEAALAELLE 244 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH---HhhcCCCe-EEEEeeCCCHHHHHHHhC
Confidence 46899999999999999999998774 24432 3333333221 11111000 011111112 23467
Q ss_pred CCcEEEEeCCcCCCCCCcH---HhHHHHHHH----HHHHHHHHHHh
Q 013466 172 DAEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r---~dll~~N~~----Ii~~i~~~I~~ 210 (442)
+.|++|..+|.......+. .+.++.|.. +++.+.+.+++
T Consensus 245 ~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 245 KVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999887543222222 234555544 45555555554
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.6 Score=45.06 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh-HHHHHHHHhcccCCCcccEEEe-cC--cc---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG-IN--PY--- 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~-l~g~a~DL~~~~~~~~~~v~i~-~~--~~--- 167 (442)
+.++|.|+||+|++|.+++..|+..+-. .+.+. +++.+. ++..+.++.... . .++.+. .| ++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~----~V~~~----~r~~~~~~~~~~~~l~~~~-~--~~v~~~~~D~~~~~~~ 75 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA----RVVLA----ALPDDPRRDAAVAQMKAAG-A--SSVEVIDFDALDTDSH 75 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC----eEEEE----eCCcchhHHHHHHHHHhcC-C--CceEEEEecCCChHHH
Confidence 4568999999999999999999987522 24442 444443 555555554321 0 012111 11 11
Q ss_pred ----cc---cCCCcEEEEeCCcCCCCCC---cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ----EL---FEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ----ea---l~dADiVIi~ag~~~kpg~---~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+. ..+.|++|..+|....... +. .+.+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 76 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~--~~~~iv~isS 146 (253)
T PRK07904 76 PKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ--GFGQIIAMSS 146 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 11 1379999987776432111 11 123566643 234566666653 3456666654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.78 Score=43.39 Aligned_cols=115 Identities=21% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
+++++.|+||+|++|..++..|++.|. .|.+. +++.+.++....++.... .++.. ..| +++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-----DLALV----ARSQDALEALAAELRSTG----VKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhCC----CcEEEEEccCCCHHHHH
Confidence 456899999999999999999998875 24442 445454444444343211 11211 111 111
Q ss_pred --------ccCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|.... + ..+ -...+..|.. +++.+.+.+.+. ..+.+++++..
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR--GGGLIINVSSI 143 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 23458999998885431 1 111 1223444443 344444444442 34566666643
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.66 Score=44.60 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=46.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~------ 167 (442)
|+|.|+||+|++|..++..|+..|. .+.+ .+++.+.++....++.+.. ++. +..| +.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~d~~~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI----SSRNEENLEKALKELKEYG-----EVYAVKADLSDKDDLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHhcC-----CceEEEcCCCCHHHHHHH
Confidence 5899999999999999999999874 2444 2455566665555554211 111 1111 11
Q ss_pred -----cccCCCcEEEEeCCcC
Q 013466 168 -----ELFEDAEWALLIGAKP 183 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~ 183 (442)
+.+..-|++|..+|..
T Consensus 67 ~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 67 VKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 2245789999988853
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.17 Score=53.30 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..+|+|+|| |.+|..++..|...|. ..|.+ .+++.+++...+.++.. .+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~----~~V~v----~~r~~~ra~~la~~~g~-------~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV----RKITV----ANRTLERAEELAEEFGG-------EAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC----CeEEE----EeCCHHHHHHHHHHcCC-------cEeeHHHHHHHhccCC
Confidence 3469999995 9999999999987764 13555 35666666656554421 1111134457788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+||.+.+.|. |-.+. ..++.. +...-....+++-+++|-|+=
T Consensus 245 vVI~aT~s~~-~~i~~--------~~l~~~---~~~~~~~~~vviDla~Prdid 286 (423)
T PRK00045 245 IVISSTGAPH-PIIGK--------GMVERA---LKARRHRPLLLVDLAVPRDIE 286 (423)
T ss_pred EEEECCCCCC-cEEcH--------HHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence 9999866432 11111 112221 111102467899999997654
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.14 Score=51.02 Aligned_cols=101 Identities=17% Similarity=0.334 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+.|| .|++|++++..|+..|. .+..+ |++.++.. +|++.- .++...+.|..++||+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV~----dr~~~k~~----~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTVY----DRTKDKCK----EFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEEE----eCcHHHHH----HHHHhc------hhhhCCHHHHHhhcCE
Confidence 56999999 79999999999999886 36665 33434433 344332 2344457899999999
Q ss_pred EEEeCCcCC----------------CCCCcH-HhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 176 VIi~ag~~~----------------kpg~~r-~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
||...+.|- .+|..- .|.-..-....++|.+.+.. .+++++
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~v 152 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRFV 152 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeEE
Confidence 998765431 122211 23334445678888888876 366763
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.6 Score=44.67 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
..+|.|+||+|.+|..++..|+..|. .|.+. +++++.++....++.+.. .++.. ..| +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~i~~~~----~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA-----EVILN----GRDPAKLAAAAESLKGQG----LSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhcC----ceEEEEEccCCCHHHHHH
Confidence 35899999999999999999998774 25542 445555554444443221 01111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|+||..+|... .|- .+ -.+.+..|..- ++.+.+.+.+. ..+.+++++..
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~iss~ 147 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIAR--GAGKIINIASV 147 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCeEEEEEccc
Confidence 122345799999887542 111 11 12344566543 33344444332 34677777753
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.8 Score=47.56 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+.+||.|+||+|.||++++..|+..|.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4467999999999999999999998774
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.1 Score=42.11 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++++|.|+||+|.+|..++..|++.|.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 356899999999999999999999875
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.79 Score=43.96 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=45.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~~e----- 168 (442)
.+|.|+||+|++|..++..|+..+. .+.+. +++.+.++....++.... .++.+.. | +++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-----~Vi~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-----QLVLA----ARNETRLASLAQELADHG----GEALVVPTDVSDAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4799999999999999999998774 24442 444455554444444321 1222221 1 121
Q ss_pred ------ccCCCcEEEEeCCcC
Q 013466 169 ------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 ------al~dADiVIi~ag~~ 183 (442)
.+.+.|+||.++|..
T Consensus 69 ~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 69 IEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 123689999988753
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.1 Score=42.18 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.+|.|+||+|+||..++..|+..|.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.17 Score=51.64 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cc--hhhhHHHHHHHHhcccCCCcc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ER--SLQALEGVAMELEDSLFPLLR 158 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~--~~~~l~g~a~DL~~~~~~~~~ 158 (442)
..||.|||+ |++|+.++..|+..|+ + .|.|.|.|. |. ...+++..+..|.... +. .
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g---~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~-v 96 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-G---KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SE-V 96 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-C---EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CC-c
Confidence 358999995 9999999999999996 2 256644432 00 0124444444444332 21 1
Q ss_pred cEEEec------CcccccCCCcEEEEeCC
Q 013466 159 EVKIGI------NPYELFEDAEWALLIGA 181 (442)
Q Consensus 159 ~v~i~~------~~~eal~dADiVIi~ag 181 (442)
++.... +..+.++++|+||.+..
T Consensus 97 ~i~~~~~~~~~~~~~~~~~~~DlVid~~D 125 (338)
T PRK12475 97 EIVPVVTDVTVEELEELVKEVDLIIDATD 125 (338)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEEcCC
Confidence 222211 12456899999998743
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.61 Score=44.28 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~ 31 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA 31 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999999774
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.81 Score=43.57 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~-----~v~~~----~r~~~~~~~~~~~l 48 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG-----IVIAA----DIDKEALNELLESL 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ecChHHHHHHHHHH
Confidence 46899999999999999999998874 24442 44555666555555
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.17 Score=48.13 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~ 145 (442)
|.+|.|+||+|++|..++..|+..|. .+.+ .+++.++++..
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~ 41 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGW-----QVIA----CGRNQSVLDEL 41 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHH
Confidence 35799999999999999999998774 2544 24555555433
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.24 Score=49.48 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.||.|+|+ |++|..++..|+..|+- .|.|+|.|. |....+++..+..|.... |. .++.
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGVg----~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~V~ 92 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGVK----SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PY-VPVT 92 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCC----eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CC-CEEE
Confidence 59999995 99999999999999972 366654321 111234444444444332 32 2343
Q ss_pred EecC--cccccCCCcEEEEeC
Q 013466 162 IGIN--PYELFEDAEWALLIG 180 (442)
Q Consensus 162 i~~~--~~eal~dADiVIi~a 180 (442)
...+ +.+.+++.|+||.+.
T Consensus 93 ~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 93 VSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEeccCCHHHHhcCCEEEEec
Confidence 3322 467899999998873
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.99 Score=43.78 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEec---------C
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGI---------N 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~---------~ 165 (442)
+++.|+||+|++|..++..|+..|. .+.+. +++.+.++....++........ ....++. .
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-----~vv~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-----ELFLT----DRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 3789999999999999999998774 24442 4444555555555542210000 0011110 0
Q ss_pred cccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 PYELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..+.+...|+||..+|...... .+. ...+..|..- .+.+.+.+.+. +..+.|++++-.
T Consensus 72 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~g~ii~isS~ 139 (272)
T PRK07832 72 IHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAA-GRGGHLVNVSSA 139 (272)
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEccc
Confidence 1123456899999888543111 121 2234445443 33333334332 234677777654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.86 Score=43.44 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc--------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~-------- 167 (442)
.++|.|+||+|.||.+++..|+..|. .|.+. +++.+.++....++.... ....-+..-..+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-----DVVLA----ARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHH
Confidence 46899999999999999999999885 25442 445555555555554211 0000011111111
Q ss_pred ---cccCCCcEEEEeCCcC
Q 013466 168 ---ELFEDAEWALLIGAKP 183 (442)
Q Consensus 168 ---eal~dADiVIi~ag~~ 183 (442)
+.+...|+||..+|..
T Consensus 75 ~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 75 LALERFGRVDALVNNAFRV 93 (258)
T ss_pred HHHHHcCCccEEEECCccC
Confidence 2235689999988853
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=51.28 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |.+|...+..++...-+ +.|.++ +++.++++..+.++.+.. + .++....+..+++++||
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~---~~v~v~----~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~aD 194 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDI---ERVRVY----SRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEAD 194 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCc---cEEEEE----CCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcCC
Confidence 3578999995 99998877766542222 235553 667788887777775321 2 23455555677899999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+.+-.
T Consensus 195 iVi~aT~ 201 (325)
T PRK08618 195 IIVTVTN 201 (325)
T ss_pred EEEEccC
Confidence 9998643
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=49.68 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=61.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c----cccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~eal 170 (442)
||.|+||+|.+|.+++..|+..+.- -.+.+ ++........+ ...++... + .+.+. .| + .+++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~---~~v~~--~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~Dl~~~~~~~~~~ 69 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPD---AEVIV--LDKLTYAGNLE-NLADLEDN--P---RYRFVKGDIGDRELVSRLF 69 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCC---CEEEE--ecCCCcchhhh-hhhhhccC--C---CcEEEEcCCcCHHHHHHHH
Confidence 5899999999999999999886521 01333 22110001111 11112111 0 11111 11 1 3445
Q ss_pred CC--CcEEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 ED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~d--ADiVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ +|+||.+++.... ....-...+..|..-...+++.+.+. ..+..++.++
T Consensus 70 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~i~~S 124 (317)
T TIGR01181 70 TEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY-WHEFRFHHIS 124 (317)
T ss_pred hhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEee
Confidence 65 8999998874321 11223445677888888888887774 2455666655
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.21 Score=50.98 Aligned_cols=70 Identities=27% Similarity=0.388 Sum_probs=41.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+|+||+|.+|..++..|...+. . .+.|..+..+.+... ...+.. .+..+..-+.++++++|+||
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p---~~~l~~~as~~~~g~----~~~~~~------~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-P---IDKLVLLASDRSAGR----KVTFKG------KELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-C---hhhEEEEeccccCCC----eeeeCC------eeEEEEeCChHHhcCCCEEE
Confidence 699999999999999999987543 1 234433322222111 111110 12333322356789999999
Q ss_pred EeCC
Q 013466 178 LIGA 181 (442)
Q Consensus 178 i~ag 181 (442)
++.|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9876
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.56 Score=45.16 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
..+|.|+||+|++|..++..|+..|. .|.+. +++.+.++....++.+. . ++.. ..| +.+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~--~---~~~~~~~D~~d~~~~~~ 70 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-----RLLLV----GRNAEKLEALAARLPYP--G---RHRWVVADLTSEAGREA 70 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHhcC--C---ceEEEEccCCCHHHHHH
Confidence 45899999999999999999998874 25442 44555555444444211 1 1211 111 111
Q ss_pred ------ccCCCcEEEEeCCcC
Q 013466 169 ------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 ------al~dADiVIi~ag~~ 183 (442)
.+...|+||..+|..
T Consensus 71 ~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 71 VLARAREMGGINVLINNAGVN 91 (263)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 135689999998864
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.1 Score=44.29 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.++|.|+||+|+||.+++..|+..|. .+.+... +.....++.....+.... .++.. ..| +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~ 123 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-----DIALNYL--PEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQ 123 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEeC--CcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHH
Confidence 35899999999999999999998774 2444322 212222333333333211 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC--CCC--Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR--GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~--kpg--~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|... .+. .+ -...+..|+.-...+.+.+..+...++.|++++.
T Consensus 124 ~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 124 LVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 122456899999988532 221 12 2334566655444455554443223457777664
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.16 Score=54.75 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||| |.+|..++..|...|. ..|.+ .+++.++++..+..+.... ..+....+..+++.++|+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~----~~V~V----~nRs~era~~La~~~~g~~----i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC----TKMVV----VNRSEERVAALREEFPDVE----IIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC----CeEEE----EeCCHHHHHHHHHHhCCCc----eEeecHhhHHHHHhcCCE
Confidence 469999996 9999999999998774 23555 3667677776655442110 011112345678999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||.+-+
T Consensus 333 VIsAT~ 338 (519)
T PLN00203 333 VFTSTS 338 (519)
T ss_pred EEEccC
Confidence 988644
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.3 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|+||+|.+|..++..|...+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999999987554
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.19 Score=50.20 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|..++..|+..|. ++.++ |++.. .+. +... . .....+..++.++||+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v~----~~~~~-~~~----~~~~--g----~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHVT----TIGPV-ADE----LLSL--G----AVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEEE----eCCHh-HHH----HHHc--C----CeecCCHHHHHhcCCEE
Confidence 4899999 59999999999999884 24443 22221 221 2111 1 22234456778999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9873
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.55 Score=46.94 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
..+|.|+||+|+||.+++..|+..|. .|.+. +++.++++....++
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~-----~V~~~----~r~~~~~~~~~~~l 50 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW-----HVIMA----CRNLKKAEAAAQEL 50 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHh
Confidence 45799999999999999999998873 25442 45555665555555
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.64 Score=46.04 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. .++.+.++....++.... + ..++.+ ..| +.
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~~----~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-----HVVLA----VRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 24442 344444444444443211 1 011221 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC-Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG-ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg-~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|+||..+|....+. .+ -...+..|.. +.+.+.+.+.+. ..+.|++++.
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 152 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSS 152 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 12346899999887532111 11 1122444433 355666666653 3467777764
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.61 Score=52.01 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-CC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dA 173 (442)
+++||+||| .|.||..++..|...|. .|..+ |++... + .+.++ . +....+..+.+. ++
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~-----~V~~~----dr~~~~-~-~a~~~-----G----v~~~~~~~el~~~~a 426 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH-----TVLAY----SRSDYS-D-EAQKL-----G----VSYFSDADDLCEEHP 426 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC-----EEEEE----ECChHH-H-HHHHc-----C----CeEeCCHHHHHhcCC
Confidence 468999999 59999999999998663 24443 333221 1 12211 1 122333344454 59
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|+||++.-. ....+++.++.. ....++++++-++.-
T Consensus 427 DvVILavP~------------~~~~~vi~~l~~---~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 427 EVILLCTSI------------LSTEKVLKSLPF---QRLKRSTLFVDVLSV 462 (667)
T ss_pred CEEEECCCh------------HHHHHHHHHHHH---hcCCCCcEEEECCCc
Confidence 999998331 112334444321 122467888877654
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.2 Score=42.33 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEecCc------
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINP------ 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~~~------ 166 (442)
+.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.+.....++.+...... ....+...+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVILL----GRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEEE----eCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHH
Confidence 456899999999999999999998774 24442 4455555556556653321100 001111001
Q ss_pred -----ccccCCCcEEEEeCCcCC--CC--CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~--kp--g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+||..+|... .+ ..+. ...+..|..- .+.+.+.+.+ .+.+.|++++.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~--~~~~~iv~~ss 152 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLK--SPAASLVFTSS 152 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHh--CCCCEEEEEcc
Confidence 123346899999887532 22 1222 2234455432 3333334444 24566666665
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.22 Score=48.90 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=58.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC-cEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA-DiV 176 (442)
+|.|+||+|.||++++..|++.|. .+... ++......... .+..+.. ....-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~---~~~~~~~-~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRGL----DRLRDGLDPLL---SGVEFVV-LDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEEE----eCCCccccccc---cccceee-ecccchHHHHHHHhcCCCEE
Confidence 499999999999999999999754 23332 22222111110 0000000 0000001123455566 999
Q ss_pred EEeCCcCCCCCCcH---HhHHHHHHHHHHHHHHHHHh
Q 013466 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 177 Ii~ag~~~kpg~~r---~dll~~N~~Ii~~i~~~I~~ 210 (442)
|..++....++..+ .++...|..-.+.+.++..+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99888655444432 34788999999999988887
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.3 Score=42.32 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||.+++..|+..|.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~ 29 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA 29 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999999874
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.24 Score=48.13 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccc-------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE------- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e------- 168 (442)
.++|.|+||+|++|.+++..|+..|. .+.+ .+++.+++.....+ .. .. ....+ .+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~l~~~~~~---~~-~~-~~~Dv--~~~~~~~~~~~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY-----TVYG----AARRVDKMEDLASL---GV-HP-LSLDV--TDEASIKAAVD 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHhC---CC-eE-EEeeC--CCHHHHHHHHH
Confidence 45899999999999999999998774 2443 24444544432210 00 00 01111 1111
Q ss_pred ----ccCCCcEEEEeCCcCCC-C--CC---cHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ----LFEDAEWALLIGAKPRG-P--GM---ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ----al~dADiVIi~ag~~~k-p--g~---~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
...+.|++|..+|.... + .. +-...+..|.. +++.+.+.+++. ..+.+++++.
T Consensus 67 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~--~~g~iv~isS 133 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ--RSGRIINISS 133 (273)
T ss_pred HHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 12378999998885421 1 11 12233445543 355555666553 2456666664
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.1 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||..++..|+..|.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~ 27 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH 27 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998874
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.23 Score=50.16 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
...+|+|||+ |.+|...+..+.. .+. +.|.++ +++.++++..+.++.+. . .++....+..+++++|
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~~----~~V~V~----~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRPI----KQVRVW----GRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCCC----CEEEEE----cCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 3579999995 9999999886665 442 235553 67778888888777532 1 1355555667799999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+.+..
T Consensus 191 DIVi~aT~ 198 (314)
T PRK06141 191 DIISCATL 198 (314)
T ss_pred CEEEEeeC
Confidence 99976533
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.7 Score=42.58 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|+|++|.+|..++..+...+-+ +.+.+. |++.++.... .. ..+..+.+..+.++++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~---elvav~----d~~~~~~~~~------~~----~~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDL---ELVAAV----DRPGSPLVGQ------GA----LGVAITDDLEAVLADADV 63 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCC---EEEEEE----ecCCcccccc------CC----CCccccCCHHHhccCCCE
Confidence 579999997799999999888764322 112232 3333332211 11 123334444556678999
Q ss_pred EEEe
Q 013466 176 ALLI 179 (442)
Q Consensus 176 VIi~ 179 (442)
||..
T Consensus 64 Vid~ 67 (257)
T PRK00048 64 LIDF 67 (257)
T ss_pred EEEC
Confidence 9865
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.23 Score=46.47 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=64.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH-HHhcccCCCcccEEEecCcccccCCC--cE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-ELEDSLFPLLREVKIGINPYELFEDA--EW 175 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~-DL~~~~~~~~~~v~i~~~~~eal~dA--Di 175 (442)
|.|+||+|.||+.++..|...+.. .+.+ ...+ . ........ ++......+ .-.....+.+++. |.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~----v~~~--~~~~-~-~~~~~~~~~~~~~~~~dl----~~~~~~~~~~~~~~~d~ 68 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE----VIVL--SRSS-N-SESFEEKKLNVEFVIGDL----TDKEQLEKLLEKANIDV 68 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE----EEEE--ESCS-T-GGHHHHHHTTEEEEESET----TSHHHHHHHHHHHTESE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc----cccc--cccc-c-ccccccccceEEEEEeec----cccccccccccccCceE
Confidence 789999999999999999998852 1222 2112 1 11111110 111000000 0001123455555 99
Q ss_pred EEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.+++.+.. ....-.+.+..|......+.+.+.+.. . ..++.++.
T Consensus 69 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~~i~~sS 116 (236)
T PF01370_consen 69 VIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAG-V-KRFIFLSS 116 (236)
T ss_dssp EEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-T-SEEEEEEE
T ss_pred EEEeecccccccccccccccccccccccccccccccccc-c-cccccccc
Confidence 9999886431 112456778889999999999999863 3 46666654
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.34 Score=47.72 Aligned_cols=96 Identities=19% Similarity=0.146 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc-cCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea-l~dADi 175 (442)
+||+|||. |.||..++..|..+... .+.|..+ .+++.++.+..+. . +.+..+..+- ....|+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~~----~-------~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALAG----R-------VALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhhc----c-------CcccCCHHHHhhcCCCE
Confidence 69999995 99999999998776432 1333333 3444444443321 1 1233333332 478999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
||-+|+ .+.+++++..+-+. +.|.+++-++==.|
T Consensus 66 VVE~A~----------------~~av~e~~~~iL~~-g~dlvv~SvGALaD 99 (267)
T PRK13301 66 VVEAAG----------------QQAIAEHAEGCLTA-GLDMIICSAGALAD 99 (267)
T ss_pred EEECCC----------------HHHHHHHHHHHHhc-CCCEEEEChhHhcC
Confidence 999998 58899999988875 46777766665454
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.85 Score=43.64 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=62.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Cccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e----- 168 (442)
.+|.|+||+|.||.+++..|++.|. .+.+. +++...++....++.... .. .++.. .. .+.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~-----~vi~~----~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~i~~~ 71 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY-----RVAVA----DINSEKAANVAQEINAEY-GE-GMAYGFGADATSEQSVLAL 71 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHhc-CC-ceeEEEEccCCCHHHHHHH
Confidence 3699999999999999999999874 24442 444444544444443211 00 01111 11 1111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---CcHH---hHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 ------LFEDAEWALLIGAKPRGPG---MERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~kpg---~~r~---dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|.+.... .+.. ..+..|.. +++.+.+.+.+. +.++.+++++..
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~~iv~~ss~ 142 (259)
T PRK12384 72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRD-GIQGRIIQINSK 142 (259)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC-CCCcEEEEecCc
Confidence 1246799999988654221 1222 22334433 344555555543 235677777664
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.1 Score=45.31 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (442)
.+|.|+||+|+||..++..|+..|. .+.+ .+++.+.++....++.... .++. +..| +.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHH
Confidence 5899999999999999999999874 2544 2555666666665554221 1121 1111 222
Q ss_pred ------ccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPR-GP--GMER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~-kp--g~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+ ..+. ...+..| ....+.+.+.+.+. ..+.|++++.
T Consensus 76 ~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~--~~g~iV~isS 144 (334)
T PRK07109 76 ADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR--DRGAIIQVGS 144 (334)
T ss_pred HHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 2346899999887532 11 1111 1223333 33445555555552 3466777664
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.35 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|+|+ |++|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999996
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.17 Score=48.62 Aligned_cols=26 Identities=27% Similarity=-0.005 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~ 35 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW 35 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC
Confidence 35899999999999999999998774
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.24 Score=49.37 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|||+ |++|+.++..|+..|+- .|.|.|.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG----~i~lvD~ 59 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIG----KFTIADF 59 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCC----eEEEEeC
Confidence 359999996 99999999999999972 2555443
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.23 Score=50.76 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..||.|||| |++|+.++..|+..|+ + .|.|+|.|
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g---~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-G---KVTIVDRD 57 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEeCC
Confidence 469999996 9999999999999996 2 36665543
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.16 Score=53.15 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..||.|||| |-+|.-++..|...|+. .|.+ .+++.++++.+|.++. . .+.-..+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-~------~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-A------EAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-C------eeecHHHHHHhhhhCC
Confidence 3468999996 99999999999999973 2554 4788888888877776 1 2222345688999999
Q ss_pred EEEEeCCcC
Q 013466 175 WALLIGAKP 183 (442)
Q Consensus 175 iVIi~ag~~ 183 (442)
+||.+-+.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999976655
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.43 Score=46.97 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=60.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccc----ccCCCc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE----LFEDAE 174 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e----al~dAD 174 (442)
|.|+||+|.||++++..|...+.. .+.+. +.......+.. +.... ....+........ .+.+.|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~~--~~~~~~~~~~~----~~~~~--~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILVV--DNLRDGHKFLN----LADLV--IADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEEE--ecCCCchhhhh----hhhee--eeccCcchhHHHHHHhhccCCCC
Confidence 579999999999999999988741 14332 11111111111 11000 0000110000111 235799
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||..|+.+.....+.......|..-...+.+.+.+. + ..++.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~v~~SS 114 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-G--IPFIYASS 114 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEcc
Confidence 9999988543222344556778888888888887774 2 34665653
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.93 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|.||++++..|+..|.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~ 30 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA 30 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.9 Score=44.98 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.|+||+|+||.+++..|+..|.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.45 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+||+|+||+|.+|..++..|...+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999987644
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.28 Score=49.55 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~e 168 (442)
|+||.|+||+|.||++++..|+..|. +.+.+. ++.... +....+.+.. .. .++.+ ..| + .+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~----~~v~~~----~~~~~~--~~~~~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS----DAVVVV----DKLTYA--GNLMSLAPVA-QS-ERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC----CEEEEE----ecCccc--cchhhhhhcc-cC-CceEEEECCCcChHHHHH
Confidence 46899999999999999999998774 123332 211110 0001111100 00 01111 111 1 23
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHh
Q 013466 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~ 210 (442)
.++ +.|+||.++|..... .......+..|..-...+.+.+.+
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 344 389999998854321 112345667788777777777665
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.17 Score=47.60 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|+|+ |++|+.++..|+..|+- .|.|.|.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg----~i~lvD~ 53 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIG----SLTILDD 53 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCC----EEEEEEC
Confidence 359999995 99999999999999972 3666543
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.56 Score=42.53 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=46.0
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHHcCCCCCCCceEEEeccccchh--h--hHHHHHHHHhcccCCCcccEEEecCccccc
Q 013466 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--Q--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (442)
Q Consensus 96 ~~KI~IIGA-~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~--~--~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (442)
..||++||- -++|..+++..+..-|. .++++...... . ..-..+.+..... ..+++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~~---g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKKN---GGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHHH---TTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHHh---CCCeEEEeCHHHhc
Confidence 469999994 37999999999998664 24433322210 1 1111222221111 13678887778999
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
++||+|....-
T Consensus 72 ~~aDvvy~~~~ 82 (158)
T PF00185_consen 72 KGADVVYTDRW 82 (158)
T ss_dssp TT-SEEEEESS
T ss_pred CCCCEEEEcCc
Confidence 99999988744
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.85 Score=43.47 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|.||..++..|+..|. .+.+. +++.+.++....++.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~ 52 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-----KVVVA----DRDAAGGEETVALIR 52 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 46899999999999999999998774 25452 455555555554553
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.27 Score=49.36 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+++|||+ |..|...+..++.-.-+ +.|.++ +++.++++..+.++.+.. ..++.+..+..+++++||
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v~~i---~~v~v~----~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~aD 184 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASVYNP---KRIRVY----SRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDAD 184 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCC---CEEEEE----CCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcCC
Confidence 4579999995 99999877777763323 346563 667788888888877531 125666677889999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 185 IV~ta 189 (301)
T PRK06407 185 TITSI 189 (301)
T ss_pred EEEEe
Confidence 99875
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.3 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||++++..|+..|.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~ 27 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD 27 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998874
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.5 Score=41.92 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.+.. .++.. ..| +
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-----QVAIA----ARHLDALEKLADEIGTSG----GKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHH
Confidence 35799999999999999999999875 25552 445566665655554321 11111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcC
Q 013466 167 -----YELFEDAEWALLIGAKP 183 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~ 183 (442)
.+.+...|++|..+|..
T Consensus 76 ~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 12235789999988754
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.55 Score=44.67 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=60.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc-----
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL----- 169 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea----- 169 (442)
++.|+||+|.||.+++..|++.|. .+.+. +++.+.++....++.... .++.. ..| +.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~i~~~~ 68 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-----AVAVA----DLNEETAKETAKEINQAG----GKAVAYKLDVSDKDQVFSAI 68 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHH
Confidence 688999999999999999999874 24442 334444554444444221 11221 111 1222
Q ss_pred ------cCCCcEEEEeCCcCC-CC--CCcHH---hHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 ------FEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 ------l~dADiVIi~ag~~~-kp--g~~r~---dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+...|+||..+|... .+ ..+.. ..+..|.. +++.+.+.+.+. +..+.+++++
T Consensus 69 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~iv~~s 136 (254)
T TIGR02415 69 DQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQ-GHGGKIINAA 136 (254)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEec
Confidence 345799999887532 12 22222 22444432 334445555553 2446666665
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.44 Score=48.22 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|+||+|.+|..+...|...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999998774
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.24 Score=48.40 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.+|.|+||+|++|.+++..|+..|.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~ 29 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW 29 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 35799999999999999999998774
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.29 Score=49.64 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
...+++|||+ |..|...+..|+. .++ +.|.++ +++.++++..+.++.+.. + .++....+..+++.+|
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i----~~v~V~----~R~~~~a~~~a~~~~~~~-g--~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDI----RSARIW----ARDSAKAEALALQLSSLL-G--IDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCc----cEEEEE----CCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhccC
Confidence 3569999995 9999998888874 442 235553 677788888887775321 1 2344555567789999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9999863
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.25 Score=49.94 Aligned_cols=73 Identities=26% Similarity=0.201 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+++|||+ |..+..-+..++.-.-+ +.|.++ +++.++++..+.++++ . ...+....+..+++++||
T Consensus 127 ~~~~l~viGa-G~QA~~~~~a~~~~~~i---~~v~v~----~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 127 DARTLGVIGA-GVQARWHLRALAAVRPI---KEVRVY----SRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS-----SEEEEE-----SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTSS
T ss_pred CCceEEEECC-CHHHHHHHHHHHHhCCc---eEEEEE----ccChhHHHHHHHhhcc-c---cccceeccchhhhcccCC
Confidence 3579999995 99999877766643223 346663 6777888989998886 2 235777777889999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 195 ii~ta 199 (313)
T PF02423_consen 195 IIVTA 199 (313)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 98875
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.2 Score=49.83 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-Ee--cCcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~--~~~~eal~d 172 (442)
..+|.|||| |++|.++++.|...|.- .|.+ .+|+.++++.++.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 458999995 99999999999988852 3655 3677788887776654221 111 11 112356688
Q ss_pred CcEEEEeC
Q 013466 173 AEWALLIG 180 (442)
Q Consensus 173 ADiVIi~a 180 (442)
+|+||.+-
T Consensus 191 ~DiVInaT 198 (282)
T TIGR01809 191 AEVLVSTV 198 (282)
T ss_pred CCEEEECC
Confidence 99999863
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.91 Score=44.37 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCc---c------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINP---Y------ 167 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~---~------ 167 (442)
.+.|.| +|+||.+++..|. .|. .|.+. +++.+.++....++.+..... .....++ +. .
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~-----~Vv~~----~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~-d~~~i~~~~~~~ 71 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGK-----KVLLA----DYNEENLEAAAKTLREAGFDVSTQEVDVS-SRESVKALAATA 71 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCC-----EEEEE----eCCHHHHHHHHHHHHhcCCeEEEEEeecC-CHHHHHHHHHHH
Confidence 344555 5999999999985 442 25553 444455554444443211000 0011111 10 0
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHH
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQI 200 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~I 200 (442)
+.+...|++|..+|... +..+-...+..|..-
T Consensus 72 ~~~g~id~li~nAG~~~-~~~~~~~~~~vN~~g 103 (275)
T PRK06940 72 QTLGPVTGLVHTAGVSP-SQASPEAILKVDLYG 103 (275)
T ss_pred HhcCCCCEEEECCCcCC-chhhHHHHHHHhhHH
Confidence 11346899999988642 112223445566443
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.39 Score=41.07 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||+|+|++|.+|..++..|....-
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~ 24 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD 24 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC
Confidence 689999889999999998888643
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.6 Score=41.33 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=47.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---Cc-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NP------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---~~------- 166 (442)
.++.|+||+|++|.+++..|+..+. .+.+. +++.+++.....++.... + ..++.+.. .+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~-----~v~~~----~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR-----DLALC----ARRTDRLEELKAELLARY-P-GIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhhC-C-CceEEEEEcCCCCHHHHHHH
Confidence 4799999999999999999998773 25442 445555555555544221 1 01222211 11
Q ss_pred ----ccccCCCcEEEEeCCcCC
Q 013466 167 ----YELFEDAEWALLIGAKPR 184 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~ 184 (442)
.+.+...|+||..+|...
T Consensus 72 ~~~~~~~~~~id~vi~~ag~~~ 93 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNAGIGK 93 (248)
T ss_pred HHHHHHHcCCCCEEEECCCcCC
Confidence 123456899999988643
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.32 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|+|+ |++|+.++..|+..|+
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 469999996 9999999999999996
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.3 Score=46.19 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE--ecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i--~~~~~eal~dA 173 (442)
..||.|||+ |.||...+..|...|- .|.+. .-+.. +.+. ++.+.. .+.. ..-.++.+.++
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga-----~V~VI--s~~~~-~~l~----~l~~~~-----~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA-----HIVVI--SPELT-ENLV----KLVEEG-----KIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE--cCCCC-HHHH----HHHhCC-----CEEEEecCCChhhcCCc
Confidence 469999996 9999999999998773 25552 21211 1122 222111 1222 22246689999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||.+-+
T Consensus 72 dlViaaT~ 79 (202)
T PRK06718 72 FLVIAATN 79 (202)
T ss_pred eEEEEcCC
Confidence 99888744
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.44 Score=48.77 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|+||+|+||+|.+|..++..|...+.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~ 27 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPE 27 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999999986543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.87 Score=46.17 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
..+|.|+||+|+||..++..|+..|. .+.+ .+++++.++....++.... .++.+ ..| +.+
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~~~g----~~~~~~~~Dv~d~~~v~~ 73 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECRALG----AEVLVVPTDVTDADQVKA 73 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHH
Confidence 35899999999999999999999874 2544 2556677776666654321 11211 111 111
Q ss_pred -------ccCCCcEEEEeCCcC
Q 013466 169 -------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 -------al~dADiVIi~ag~~ 183 (442)
.+...|++|..+|..
T Consensus 74 ~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 74 LATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred HHHHHHHhcCCCCEEEECCCcC
Confidence 135679999998854
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.07 Score=52.18 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=79.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC---CCC---CceEEEeccccc--hhhh--HHHHHHHHhcccCCCcccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVL---GPD---QPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~---~~~---~~I~L~l~d~d~--~~~~--l~g~a~DL~~~~~~~~~~v~i~~~~ 166 (442)
.||.|.|| |..|..++..|+..+.- +++ +.+.+ +|..- ..++ +...-..+.+ +.++-....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~--vD~~Gll~~~r~~l~~~~~~~~~----~~~~~~~~~~L 98 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWX--VDRKGLLVKNRKETCPNEYHLAR----FANPERESGDL 98 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEE--ECCCCeEeCCCCccCHHHHHHHH----HcCcccccCCH
Confidence 69999996 99999999988876542 111 23444 33220 0111 1111111110 11111123567
Q ss_pred ccccC--CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCCCc
Q 013466 167 YELFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPA 241 (442)
Q Consensus 167 ~eal~--dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~p~ 241 (442)
.|+++ ++|++|=+.+.| |. +-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+ +
T Consensus 99 ~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~-~~PIIFaLSNPt~~aE~tpe~a~~~t~G--~ 161 (254)
T cd00762 99 EDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEIN-ERPVIFALSNPTSKAECTAEEAYTATEG--R 161 (254)
T ss_pred HHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcC-CCCEEEECCCcCCccccCHHHHHhhcCC--C
Confidence 89999 999988665533 31 2245666677775 889999999997 4566667776632 4
Q ss_pred ceeeccchhhHHH
Q 013466 242 KNFHALTRLDENR 254 (442)
Q Consensus 242 kvig~gT~LDs~R 254 (442)
.+|++|.....+.
T Consensus 162 ai~AtGspf~pv~ 174 (254)
T cd00762 162 AIFASGSPFHPVE 174 (254)
T ss_pred EEEEECCCCCCcc
Confidence 6888888755554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.35 Score=45.79 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=30.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D 148 (442)
||+.|+||+|+||.+++..|+..|. .+.+. +++.++++..+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~-----~v~~~----~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH-----KVTLV----GARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHh
Confidence 4899999999999999999998774 24442 4455555544433
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.37 Score=45.48 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
..++.|+||+|++|..++..|+..+. .+.+. +++.+.++....++.. ++.+. .| +.+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~-----~v~~~----~~~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~ 69 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA-----IVGLH----GTRVEKLEALAAELGE-------RVKIFPANLSDRDEVKA 69 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHhCC-------ceEEEEccCCCHHHHHH
Confidence 46899999999999999999998874 24442 3444555544433321 11111 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-CCC-----cHHhHHHHHHHHH----HHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRG-PGM-----ERAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-pg~-----~r~dll~~N~~Ii----~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|.... +.. +-...+..|..-. +.+.+.+.+. ..+.+++++..
T Consensus 70 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 140 (245)
T PRK12936 70 LGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRR--RYGRIINITSV 140 (245)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHh--CCCEEEEECCH
Confidence 23468999998885421 111 1123345554433 3333333332 45677777754
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.9 Score=41.14 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.++|.|+||+|++|++++..|+..|.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 347999999999999999999998874
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.8 Score=40.77 Aligned_cols=75 Identities=23% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----- 167 (442)
..+|.|+||+|++|.+++..|+..|. .|.+. +++.+.++....++... + .++.+. .| +.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~-----~Vi~~----~r~~~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~~~~ 73 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV-----NVGLL----ARTEENLKAVAEEVEAY--G--VKVVIATADVSDYEEVTA 73 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHh--C--CeEEEEECCCCCHHHHHH
Confidence 35799999999999999999998874 25452 44444444444455321 1 122221 11 11
Q ss_pred ------cccCCCcEEEEeCCcC
Q 013466 168 ------ELFEDAEWALLIGAKP 183 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~ 183 (442)
+.+.+.|+||.++|..
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 74 AIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHHHcCCccEEEEcCccc
Confidence 1234789999988754
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.46 Score=45.54 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=32.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.+|.|+||+|.+|.+++..|+..|. .+.+. +++.+.++....++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~ 50 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA-----RVVIA----DIKPARARLAALEI 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----cCCHHHHHHHHHHh
Confidence 4799999999999999999999874 25442 44555555554444
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.3 Score=41.72 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.+.....++.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l~ 51 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-----EVIV----VDICGDDAAATAELVE 51 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHH
Confidence 45899999999999999999998874 2444 2444444444444443
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=93.15 E-value=2 Score=41.74 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~ 43 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA 43 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 35799999999999999999998874
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.49 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~ 119 (442)
+++|.|+||+|.+|..++..|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 468999999999999999999976
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.3 Score=42.31 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+.++|.|+||+|+||..++..|+..|. .+.+. +++.+.+.....++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-----HVLVN----GRNAATLEAAVAALR 56 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-----eEEEE----eCCHHHHHHHHHHHH
Confidence 356899999999999999999998774 25552 444555555555554
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=1 Score=44.12 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=62.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~------ 167 (442)
+.+.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.. ..| +.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~-----~Vv~~----~r~~~~l~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA-----RVVLG----DVDKPGLRQAVNHLRAEG----FDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHHHHHH
Confidence 4689999999999999999999875 25442 444555665555554221 01211 111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+. ...+..|.. +.+.+.+.+.+. +..+.+++++.
T Consensus 74 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~-~~~g~iv~isS 143 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQ-GTGGHVVFTAS 143 (275)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 123457999999886431 1 1122 223445543 344444444443 23466777764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.5 Score=41.86 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.+++.|+||+|+||..++..|+..|. .|.+. +++.+.++....++.+.. +. .++.. ..| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~~----~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLIV----ARDADALAQARDELAEEF-PE-REVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhhC-CC-CeEEEEECCCCCHHHHHH
Confidence 35899999999999999999998774 24442 445566666666654331 10 11211 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+||..+|... .+. .+. ...+..|.. +++...+.+.+. +.+.+++++.
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 223456899999887532 121 121 123344433 344444445442 4466666664
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.49 Score=49.00 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||.+|-||..++..|.... + ..++-+ |++ |.. ..+..+.+++||+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~----~~V~g~--D~~------------d~~---------~~~~~~~v~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--Q----LEVIGH--DPA------------DPG---------SLDPATLLQRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--C----CEEEEE--cCC------------ccc---------cCCHHHHhcCCCE
Confidence 4699999955999999999999752 2 223223 321 111 1234577899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||++.- ...+.+++.++++..... +|+++|.-++-
T Consensus 55 VilavP------------v~~~~~~l~~l~~~~~~l-~~~~iVtDVgS 89 (370)
T PRK08818 55 LIFSAP------------IRHTAALIEEYVALAGGR-AAGQLWLDVTS 89 (370)
T ss_pred EEEeCC------------HHHHHHHHHHHhhhhcCC-CCCeEEEECCC
Confidence 999854 233344444444422112 36666665553
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.29 Score=49.24 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
...+|+|||+ |.+|...+..+.. .+. +.|.++ +++.++++..+.++... .. .+. ..+..+++.+|
T Consensus 124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~----~~v~v~----~r~~~~a~~~a~~~~~~--~~--~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIGT-GVQARAHLEAFAAGLPV----RRVWVR----GRTAASAAAFCAHARAL--GP--TAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhCCC----CEEEEE----cCCHHHHHHHHHHHHhc--CC--eeE-ECCHHHHhhcC
Confidence 4579999995 9999999998875 343 235553 66778888888777532 11 223 34567789999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+.+-
T Consensus 190 DiVitaT 196 (304)
T PRK07340 190 DLVVTAT 196 (304)
T ss_pred CEEEEcc
Confidence 9999863
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.5 Score=47.84 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||+ |++|.+++..|...++ .+.+.+ +.+.+.++.. .+. . +.. .+..+++++||+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~-----~Viv~~---~~~~~~~~~a-~~~-----G----v~~-~s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL-----NVIVGL---RKGGASWKKA-TED-----G----FKV-GTVEEAIPQADL 62 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC-----eEEEEE---CcChhhHHHH-HHC-----C----CEE-CCHHHHHhcCCE
Confidence 368999995 9999999999998875 133321 2222222211 111 1 122 235678899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99974
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.9 Score=40.39 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 446899999999999999999998774
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.17 Score=48.74 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|+||.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA 30 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.59 Score=43.74 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.||..++..|++.|.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC
Confidence 46899999999999999999998874
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.8 Score=41.33 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=31.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.+|.|+||+|.||..++..|+..|. .+.+. +++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~-----~v~~~----~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD-----RVLAL----DIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHh
Confidence 3799999999999999999998774 24442 44555555444444
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.1 Score=49.75 Aligned_cols=97 Identities=7% Similarity=0.025 Sum_probs=59.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+..|||.|+||+|.||++++..|...+. ++.+..- +.. + ...+..++.+ .+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~~--~l~-d-~~~v~~~i~~-------------------~~p 429 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGKG--RLE-D-RSSLLADIRN-------------------VKP 429 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeecc--ccc-c-HHHHHHHHHh-------------------hCC
Confidence 3457999999999999999999988663 1322111 100 0 1111111110 157
Q ss_pred cEEEEeCCcCCCCCC-----cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe
Q 013466 174 EWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (442)
Q Consensus 174 DiVIi~ag~~~kpg~-----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv 221 (442)
|+||.+|+....+.. +..+.+..|..-...+++.+.+. + +.++++
T Consensus 430 d~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g--~~~v~~ 479 (668)
T PLN02260 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-G--LLMMNF 479 (668)
T ss_pred CEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-C--CeEEEE
Confidence 999998876432222 34567788999899999988875 2 344555
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.9 Score=40.78 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||..++..|+..|.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.27 Score=50.56 Aligned_cols=79 Identities=20% Similarity=0.145 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .|.|.|.|. |....+++..+..|.... |.. ++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg----~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v-~v 100 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG----HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDV-KV 100 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC----eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCc-EE
Confidence 369999996 99999999999999972 366654432 111134555555554433 321 22
Q ss_pred EEe-----cC-cccccCCCcEEEEeCC
Q 013466 161 KIG-----IN-PYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~-----~~-~~eal~dADiVIi~ag 181 (442)
... .. ..+.++++|+||.+..
T Consensus 101 ~~~~~~i~~~~~~~~~~~~DvVvd~~d 127 (355)
T PRK05597 101 TVSVRRLTWSNALDELRDADVILDGSD 127 (355)
T ss_pred EEEEeecCHHHHHHHHhCCCEEEECCC
Confidence 221 11 1356899999998744
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=2 Score=41.19 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|++|..++..|+..|. .+.+. +++.+.++....++.... . .++.. ..| +.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHLV----ARDADALEALAADLRAAH-G--VDVAVHALDLSSPEAREQ 74 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHH
Confidence 36899999999999999999998774 24442 445555555544444221 1 01111 111 11
Q ss_pred --cccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 --ELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 --eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.+++++.
T Consensus 75 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 75 LAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 23467899999887542 221 121 223444543 344445555552 3466776664
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.54 Score=46.22 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|+ |++|.+++..|+..+. .+.+. +++.++++..+.++... . .+.....+...+.++|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v~----~R~~~~~~~la~~~~~~--~---~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADC-----NVIIA----NRTVSKAEELAERFQRY--G---EIQAFSMDELPLHRVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHhhc--C---ceEEechhhhcccCccE
Confidence 468999996 9999999999998763 25442 56666777666655421 1 12222222334568999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+.+..
T Consensus 182 vInatp~g 189 (270)
T TIGR00507 182 IINATSAG 189 (270)
T ss_pred EEECCCCC
Confidence 99976543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=1 Score=42.87 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.+|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-----HVIVS----SRKLDGCQAVADAIV 53 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 5799999999999999999998874 25442 445555555555554
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.41 Score=48.28 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+||.|+||+|.||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998774
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.98 Score=48.40 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=65.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~------ 167 (442)
.++.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.... .++... .| +.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGA-----EVVA----SDIDEAAAERTAELIRAAG----AVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHH
Confidence 6899999999999999999999875 2444 2556666666665554221 112111 11 11
Q ss_pred -----cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. +..+.|++++.
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS 452 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVAS 452 (582)
T ss_pred HHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 12335799999988653211 121 22344553 3344445555553 24577777765
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=2.4 Score=40.44 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----- 168 (442)
+++.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++.. ..| +.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-----NVVIT----GRTKEKLEEAKLEIEQFP----GQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 4789999999999999999998775 24442 444455555555453221 11211 111 111
Q ss_pred ------ccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|+||..+|... .+ ..+. ...+..|.. +.+.+.+.+.+. ...+.+++++-
T Consensus 69 ~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~g~ii~isS 138 (252)
T PRK07677 69 VEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEK-GIKGNIINMVA 138 (252)
T ss_pred HHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCCEEEEEEcC
Confidence 2346799999877432 12 2222 223445543 334444443332 23577777773
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.7 Score=46.83 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeCC
Q 013466 108 IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGA 181 (442)
Q Consensus 108 VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag 181 (442)
-|+.+|..|+..|. ++.++ |++.++++ ..+..+.+. .+....+..++.++||+||++-.
T Consensus 31 gGspMArnLlkAGh-----eV~V~----Drnrsa~e~e~~e~Laea------GA~~AaS~aEAAa~ADVVIL~LP 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH-----DVVLA----EPNREFMSDDLWKKVEDA------GVKVVSDDKEAAKHGEIHVLFTP 90 (341)
T ss_pred CHHHHHHHHHHCCC-----EEEEE----eCChhhhhhhhhHHHHHC------CCeecCCHHHHHhCCCEEEEecC
Confidence 37889999998774 35553 44444332 222233322 13344567799999999998733
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.8 Score=41.85 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|.||.+++..|+..|. .+.+. +++.+.++....++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA-----AVMIV----GRNPDKLAAAAEEIE 52 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHH
Confidence 36899999999999999999999875 25553 344445554444443
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.9 Score=41.23 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||..++..|+..|.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.48 Score=47.95 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+++|||+ |..+..-+..+....-+ +.|.++ +++.++++..+..+++. . .++.+..+..+++++||
T Consensus 127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i---~~v~v~----~r~~~~a~~~~~~~~~~--~--~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVGT-GIQARMQLMYLKNVTDC---RQLWVW----GRSETALEEYRQYAQAL--G--FAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhcCCC---CEEEEE----CCCHHHHHHHHHHHHhc--C--CcEEEECCHHHHhcCCC
Confidence 4679999995 99999888877764323 346663 66778888777655532 1 24666667789999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 195 IV~ta 199 (315)
T PRK06823 195 LIVTT 199 (315)
T ss_pred EEEEe
Confidence 99975
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.9 Score=41.28 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++...... .++.. ..| +.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~~----~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~ 75 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVALA----DLDAALAERAAAAIARDVAG--ARVLAVPADVTDAASVAA 75 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhccCC--ceEEEEEccCCCHHHHHH
Confidence 35799999999999999999999874 25442 45556666666666431101 11211 111 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC-C-CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPR-GP-G-MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~-kp-g-~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+ . .+. ...+..|..- .+...+.+.+. ..+.|++++-
T Consensus 76 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 145 (260)
T PRK07063 76 AVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER--GRGSIVNIAS 145 (260)
T ss_pred HHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--CCeEEEEECC
Confidence 2346899999888532 11 1 122 1233444332 34444444442 3567777765
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.18 Score=52.09 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccccCCCc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFEDAE 174 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal~dAD 174 (442)
|.|+|| |.||+.++..|+....+. .+.+ .|++.++++..+..+.. .....+.+...+ .+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789998 999999999999877532 2555 47777777766554311 111112222222 45789999
Q ss_pred EEEEeCCc
Q 013466 175 WALLIGAK 182 (442)
Q Consensus 175 iVIi~ag~ 182 (442)
+||.++|.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99999874
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.88 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|++|++++..|+..|.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.39 Score=49.35 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-CC-CcccEEE-ecC-----
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVKI-GIN----- 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-~~-~~~~v~i-~~~----- 165 (442)
.++++|.|+||+|.||++++..|+..|. .|.+.. ++.+.+... .++.... .. ....+.. ..|
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~~----r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~ 120 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIAV----DTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPE 120 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEe----CCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHH
Confidence 3457999999999999999999999874 243321 122222211 1221100 00 0001221 111
Q ss_pred -cccccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 166 -PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 166 -~~eal~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..++++++|.|+.+++.....+. ....+...|..-...+.+.+.+.
T Consensus 121 ~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 121 SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 23467889999987764322221 12344556777777777776663
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.32 Score=47.33 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|.||.+++..|+..|.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~ 28 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD 28 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=2.6 Score=39.83 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=32.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.+|.|+||+|++|.+++..|+..|. .+.+ .+++.+.++....++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~-----~V~~----~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA-----TVIL----VARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-----EEEE----EeCChHHHHHHHHHH
Confidence 5899999999999999999998774 2444 255556666555544
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.4 Score=48.39 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c----ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----YEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----~ea 169 (442)
|||.|+||+|.||++++..|+..|.- .+.. ++......... ...++... .++. +..| + .++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~Dl~d~~~~~~~ 68 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD----SVVN--VDKLTYAGNLE-SLADVSDS-----ERYVFEHADICDRAELDRI 68 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC----eEEE--ecCCCccchHH-HHHhcccC-----CceEEEEecCCCHHHHHHH
Confidence 58999999999999999999987641 1222 21100001111 11111100 0111 1111 1 233
Q ss_pred cC--CCcEEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 170 FE--DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 170 l~--dADiVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
++ +.|+||.+|+.... +.....+.+..|+.-...+.+.+.++
T Consensus 69 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 69 FAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred HHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 43 47999999886431 12223557788888888888777653
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.6 Score=42.27 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..++.|+||+|++|.+++..|+..|. .+.+. +++.+.++....++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 55 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-----KVAIL----DRNQEKAEAVVAEIK 55 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 35799999999999999999998875 25442 444555555555554
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.37 Score=49.60 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=61.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INP 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~ 166 (442)
.++.++.|+|++|.+|.+++..|...+.. ..++++|...........-.++ ....++.- ...
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~------~~~~v~~~~~D~~~~~~i 70 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGF------RSGRVTVILGDLLDANSI 70 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcc------cCCceeEEecchhhhhhh
Confidence 34679999999999999999999998853 2344443322112222221111 11122221 234
Q ss_pred ccccCCCcEEEEe-CC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 167 YELFEDAEWALLI-GA-KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 167 ~eal~dADiVIi~-ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..++.++ .|++. ++ .|+..-..|......|.+=-+.+.+.+.+.
T Consensus 71 ~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 71 SNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred hhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 7789999 55554 33 233222245555667777667777777764
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.2 Score=57.12 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (442)
|||.|+||+|.||++++..|+..|. .+... +++.... +.... .+ ....+. ....++++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~l----~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVGI----ARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEEE----ECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999998774 24332 2221110 00000 00 001111 11235678899
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+||.+++... + ....|..-...+.+.+.+. + -..+++++.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~-g-vkr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAET-G-TGRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHc-C-CCeEEEECCcH
Confidence 9999987432 1 3456777677777777764 2 23677777664
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.1 Score=45.02 Aligned_cols=107 Identities=11% Similarity=-0.020 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhhHHHHHHHHhcccCCCcccEEEe-cC--c----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIG-IN--P----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~ 167 (442)
.+||.|+||+|.||++++..|+..|. .|.+.....+ .+.+.++....+. +. ....+... .| + .
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~Dl~d~~~~~ 76 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY-----EVHGIIRRSSNFNTQRLDHIYIDP-HP---NKARMKLHYGDLSDASSLR 76 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC-----EEEEEecccccccccchhhhcccc-cc---ccCceEEEEecCCCHHHHH
Confidence 46899999999999999999999874 2433221111 0111222221110 00 00112111 11 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 168 ELFED--AEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+.+++ .|+||.+|+...... ..-...+..|..-...+.+.+.+.
T Consensus 77 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 124 (340)
T PLN02653 77 RWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH 124 (340)
T ss_pred HHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh
Confidence 33443 599999988643221 122334566766667777777665
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.41 Score=47.38 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..+|.|+|+ |+||+.++..|+..|+- .|.|.+.|
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GVg----~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGIG----AITLIDMD 63 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC----EEEEEeCC
Confidence 469999995 99999999999999962 26665543
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.44 Score=48.88 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+++|||+ |..+...+..++.-.-+ ++|.++ +++.++++..+.++.+. . .++....+..+++++||+
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i---~~V~v~----~r~~~~a~~~~~~~~~~--~--~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGI---EEIRLY----DIDPAATAKLARNLAGP--G--LRIVACRSVAEAVEGADI 196 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCc---eEEEEE----eCCHHHHHHHHHHHHhc--C--CcEEEeCCHHHHHhcCCE
Confidence 578999995 99998877666643222 345553 66778888888887642 1 246666778899999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|+.+-
T Consensus 197 IvtaT 201 (346)
T PRK07589 197 ITTVT 201 (346)
T ss_pred EEEec
Confidence 99853
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.6 Score=47.95 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~---------- 165 (442)
|||.|+||+|.||++++..|+....- ..|.... .+.....+......+.+ .++.... |
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g---~~V~~l~--R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE---ATVHVLV--RRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC---CEEEEEE--CcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 48999999999999999999952211 1243321 11111222222111100 0122111 1
Q ss_pred -cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 166 -PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 166 -~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..+.++++|+||.+++... ......+....|..-...+.+.+.+.
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~ 115 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL 115 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc
Confidence 1223488999999887532 22334455677877777887777764
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.55 Score=49.28 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|+ |.||..++..+...|. .+.+. |+++.+++ .+.++ .. .+ ....++++++|+
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV~----d~d~~R~~-~A~~~-----G~--~~---~~~~e~v~~aDV 260 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIVT----EVDPICAL-QAAME-----GY--EV---MTMEEAVKEGDI 260 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----ECChhhHH-HHHhc-----CC--EE---ccHHHHHcCCCE
Confidence 469999995 9999999999998775 14442 44444443 33322 11 11 123477889999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
||.+.|. ..++..- .+... .+++++++++.+
T Consensus 261 VI~atG~---------------~~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 261 FVTTTGN---------------KDIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEECCCC---------------HHHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 9988662 2223221 12332 478899999975
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.2 Score=40.98 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Ccc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~------ 167 (442)
..+.|+||+|+||.+++..|+..|. .+.+. +++.++++....++.... +- .++.. .. .+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA-----SVAIC----GRDEERLASAEARLREKF-PG-ARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHHhhC-CC-ceEEEEEecCCCHHHHHHH
Confidence 5799999999999999999998875 25442 455556665555554321 10 11211 11 111
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -----ELFEDAEWALLIGAKPRG-P--GMERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~k-p--g~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+.. ..+..| ....+.+.+.+.+. ..+.|++++-
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS 146 (265)
T PRK07062 78 AAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS--AAASIVCVNS 146 (265)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--CCcEEEEecc
Confidence 223567999999886431 1 11111 122233 33445555555552 3466776654
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.75 Score=45.19 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|.||+|.+|..+...+.+.+-+ .|.-. .++...... -.|.....---.-.+-++.+......++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~------~L~aa-~~~~~~~~~--g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDL------ELVAA-FDRPGSLSL--GSDAGELAGLGLLGVPVTDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCc------eEEEE-EecCCcccc--ccchhhhccccccCceeecchhhcccCCCE
Confidence 689999999999999999999987742 22211 132222111 111111110001134455556778889999
Q ss_pred EEE
Q 013466 176 ALL 178 (442)
Q Consensus 176 VIi 178 (442)
+|=
T Consensus 73 ~ID 75 (266)
T COG0289 73 LID 75 (266)
T ss_pred EEE
Confidence 884
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.61 Score=44.18 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA 31 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.44 Score=49.30 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+ + .|.|.+.|. |....+++..+..|.... +.. ++
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g---~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~v 207 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV-G---TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDV-QV 207 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCC-EE
Confidence 358999995 9999999999999996 2 366654431 111335555555454332 211 22
Q ss_pred EEecC------cccccCCCcEEEEeCC
Q 013466 161 KIGIN------PYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~~------~~eal~dADiVIi~ag 181 (442)
..... ..+.++++|+||.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~D~Vv~~~d 234 (376)
T PRK08762 208 EAVQERVTSDNVEALLQDVDVVVDGAD 234 (376)
T ss_pred EEEeccCChHHHHHHHhCCCEEEECCC
Confidence 22111 1235789999998744
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.47 Score=47.02 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||.|+||+|.+|+++...|...+. ++.. . ++. -.|+.+.. .+ ....+.. .-|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~~--~--~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVIA--T--SRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEEE--E--STT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEEE--e--Cch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999998663 1222 1 111 11111110 00 0001112 36799
Q ss_pred EEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|.+++...... .+.......|......+++.+.+. ++.+|.+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 99887543111 234556678888888888887763 56777666
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.45 Score=45.81 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D 148 (442)
..+|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....+
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~ 49 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA-----RVAVL----ERSAEKLASLRQR 49 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHH
Confidence 35899999999999999999998874 25442 4555555544433
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.83 Score=43.34 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=2.4 Score=41.92 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|+||..++..|+..|. .+.+. +++.+.++..+.++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-----KLALV----DLEEAELAALAAELG 54 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhc
Confidence 35899999999999999999999884 25442 455666666655553
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.28 Score=46.74 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|++|.|+||+|++|+.++..|++.|.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 35799999999999999999999874
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.94 Score=42.58 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||..++..|+..|.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.54 Score=48.82 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
....++|||+ |..+..-+..++. .+-+ +.|.++ +++.++++..+.++.+.. +...++.+..+..+++++|
T Consensus 154 da~~l~iiG~-G~QA~~~l~a~~~v~~~i---~~V~v~----~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLGP-GVMGKTILAAFMAVCPGI---DTIKIK----GRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHhcCCc---cEEEEE----CCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 3579999995 9999998887776 2223 236553 677788888888876432 1111467777788999999
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999864
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.7 Score=42.16 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..|.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~ 28 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY 28 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC
Confidence 4689999999999999999998774
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.72 Score=46.01 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|+|+ |.+|..++..|...|. .|.+. +++.+++.. +.++. . ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v~----~R~~~~~~~-~~~~g--~----~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFVG----ARSSADLAR-ITEMG--L----IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHH-HHHCC--C----eeec-HHHHHHHhccCCE
Confidence 359999995 9999999999998773 25442 555444321 11111 0 0111 1234567899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||.+.
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99974
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.55 Score=48.89 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=53.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|.||..++..|..-|. .|.. + |+.....+ ...++ .+....+..+.+++||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V~~--~--dr~~~~~~-~~~~~---------g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KLHY--T--DRHRLPEE-VEQEL---------GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--CCCCCchh-hHhhc---------CceecCCHHHHhhcCCEE
Confidence 6899999 59999999999987553 2332 3 33221111 11111 122234567889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++.... . ..+-.++. .+.+... ++++++||++
T Consensus 253 ~l~lPl-----t------~~T~~li~--~~~l~~m-k~ga~lIN~a 284 (385)
T PRK07574 253 TIHCPL-----H------PETEHLFD--ADVLSRM-KRGSYLVNTA 284 (385)
T ss_pred EEcCCC-----C------HHHHHHhC--HHHHhcC-CCCcEEEECC
Confidence 997331 1 11122221 1333443 5788999887
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.9 Score=40.81 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||+.++..|+..+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998774
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.9 Score=41.22 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~-----~vv~----~~r~~~~~~~~~~~l~ 56 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQ 56 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 46899999999999999999999874 2444 2444455555555554
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.7 Score=41.96 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..+|.|+||+|+||..++..|+..|. .+.+. +++.+.+.....++.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-----NVAVA----SRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 35899999999999999999998774 24442 444445554444443
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.54 Score=46.48 Aligned_cols=136 Identities=14% Similarity=0.036 Sum_probs=69.9
Q ss_pred eeeEEeecccchHH---hhh-ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhc
Q 013466 76 GVFCLTYDLKAEEE---TKS-WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (442)
Q Consensus 76 ~v~~~~~~~~~~~~---~~~-~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~ 151 (442)
|.--+||-+++-.. +.+ ..+.++|.|+||+|.||.+++..|+..|. .+.+.... . ...++.....+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~-----~V~l~~r~--~-~~~~~~~~~~~~~ 93 (290)
T PRK06701 22 GIESLMNPLPQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-----DIAIVYLD--E-HEDANETKQRVEK 93 (290)
T ss_pred ChhhhCCcccCCCccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEeCC--c-chHHHHHHHHHHh
Confidence 66666666533111 111 12236899999999999999999998774 24443221 1 1223333333321
Q ss_pred ccCCCcccEEE-ecC--cc-----------cccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHHHHHHHHHHHh
Q 013466 152 SLFPLLREVKI-GIN--PY-----------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 152 ~~~~~~~~v~i-~~~--~~-----------eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~Ii~~i~~~I~~ 210 (442)
. . .++.+ ..| +. +.+...|+||..+|... .+- .+. ...+..|..-...+.+.+..
T Consensus 94 ~--~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~ 169 (290)
T PRK06701 94 E--G--VKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALP 169 (290)
T ss_pred c--C--CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 1 11211 111 11 11235799998887532 111 111 23466666655666655554
Q ss_pred hhCCCeEEEEeCC
Q 013466 211 VASRNVKVIVVGN 223 (442)
Q Consensus 211 ~a~p~a~vivvtN 223 (442)
+-.+.+.+|+++.
T Consensus 170 ~~~~~g~iV~isS 182 (290)
T PRK06701 170 HLKQGSAIINTGS 182 (290)
T ss_pred HHhhCCeEEEEec
Confidence 3223456776665
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.03 E-value=2 Score=47.97 Aligned_cols=45 Identities=33% Similarity=0.296 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.+|.|+||+|+||..++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-----~Vvl~----~r~~~~~~~~~~~l~ 467 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-----CVVLA----DLDEEAAEAAAAELG 467 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-----EEEEE----eCCHHHHHHHHHHHh
Confidence 6899999999999999999998874 25442 455555555544443
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.2 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|+||+|||+ |.||..++..|...+.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~ 25 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD 25 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC
Confidence 579999996 9999999998887643
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.39 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|+|+ |++|+.++..|+..|+ + .+.|.|.
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GV-g---~i~LvD~ 43 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGV-G---KLTLIDF 43 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-C---EEEEECC
Confidence 358999995 9999999999999996 2 3555443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.96 E-value=3.1 Score=40.38 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc--------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~-------- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++ +.++..+.++.+.. .....+..-..+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~-----~vi~~----~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA-----YVLAV----DIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHH
Confidence 35799999999999999999999874 24442 444 44555555554321 0000011101111
Q ss_pred ---cccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ---ELFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ---eal~dADiVIi~ag~~~kpg----~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|....++ .+. ...+..|. .+++.+.+.+.+ .++.|++++..
T Consensus 75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~g~iv~isS~ 142 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMME---QGGSIINTSSF 142 (272)
T ss_pred HHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH---cCCEEEEeCch
Confidence 12345799999888643211 111 12233443 334455555544 23677777653
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.47 Score=47.28 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--CcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~dA 173 (442)
..+|.|+|| |+.|.++++.|+..|.- .|.+ .+++.++++.++.++.... +.. .+.... +..+.+.++
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~~----~i~i----~nR~~~ka~~La~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 195 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGVQ----KLQV----ADLDTSRAQALADVINNAV-GRE-AVVGVDARGIEDVIAAA 195 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCC----EEEE----EcCCHHHHHHHHHHHhhcc-Ccc-eEEecCHhHHHHHHhhc
Confidence 358999996 99999999999987752 3555 3677788887776654221 110 111111 112356789
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+||-+-
T Consensus 196 divINaT 202 (283)
T PRK14027 196 DGVVNAT 202 (283)
T ss_pred CEEEEcC
Confidence 9999863
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.3 Score=41.01 Aligned_cols=114 Identities=10% Similarity=-0.038 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
..++.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.. ..| +
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~-----~vv~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 76 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA-----TIVFN----DINQELVDKGLAAYRELG----IEAHGYVCDVTDEDGVQA 76 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHH
Confidence 35799999999999999999998874 24442 444555555555453211 11211 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC-C-cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG-M-ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg-~-~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+- . +. ...+..|.. +.+.+.+.+.+ ...+.|++++..
T Consensus 77 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~g~iv~isS~ 147 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK--KGHGKIINICSM 147 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh--cCCcEEEEEcCc
Confidence 122345799999887532 121 1 11 122334432 33344455544 245677777764
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.5 Score=42.22 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|+||.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 35799999999999999999998874
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.2 Score=40.35 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|.+|+.++..|+..|.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~ 26 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA 26 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.6 Score=40.23 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|+||.+++..|+..|.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~ 32 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA 32 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 46899999999999999999998774
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.94 Score=47.01 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC----------CcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~----------~~~~v~i~~~ 165 (442)
..+|+||| .|-||-.+|-..+..|. ++ .- .|+|..+.+.+-.--.+..-+ -..+.+.++
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~-----~V--iG--~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTt- 77 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGF-----KV--IG--VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATT- 77 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCC-----ce--Ee--EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEec-
Confidence 47999999 79999999999999885 12 12 244444433221100000000 012455544
Q ss_pred cccccCCCcEEEEeCCcCC
Q 013466 166 PYELFEDAEWALLIGAKPR 184 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~ 184 (442)
+.+.++.||++|++.-.|.
T Consensus 78 d~~~l~~~dv~iI~VPTPl 96 (436)
T COG0677 78 DPEELKECDVFIICVPTPL 96 (436)
T ss_pred ChhhcccCCEEEEEecCCc
Confidence 6788889999999876664
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=91.92 E-value=2.2 Score=41.65 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+..||.|||| |++|+.++..|+..|+
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHH 35 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccc
Confidence 45689999995 9999999999998763
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.91 E-value=2 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
+++||+||| +|+||..++..+...+
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~ 27 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSE 27 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCC
Confidence 458999999 6999999888887643
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.57 Score=49.35 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|+|+ |.||..++..|...|. .|.+. |++..++...+++ .+ .+ .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV~----d~dp~ra~~A~~~------G~----~v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIVT----EVDPICALQAAMD------GF----RV-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEEE----cCCchhhHHHHhc------CC----Ee-cCHHHHHhCCC
Confidence 3469999995 9999999999998774 25553 3333333222221 11 11 12457788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+||.+.| |..++..- .+... .+++++++++-+.
T Consensus 270 VVI~aTG---------------~~~vI~~~--~~~~m-K~GailiNvG~~d 302 (425)
T PRK05476 270 IFVTATG---------------NKDVITAE--HMEAM-KDGAILANIGHFD 302 (425)
T ss_pred EEEECCC---------------CHHHHHHH--HHhcC-CCCCEEEEcCCCC
Confidence 9988755 22333321 22222 4788999998553
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=3.5 Score=38.69 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|+||+.++..|+..|.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~ 30 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA 30 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.5 Score=42.02 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=62.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c--------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P-------- 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~-------- 166 (442)
.+.|+||+++||..++..|++ +. .+.+. +++.+.++..+.++...... .+. +..| +
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~-----~Vil~----~r~~~~~~~~~~~l~~~~~~---~~~~~~~Dv~d~~~v~~~~ 68 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GE-----DVVLA----ARRPEAAQGLASDLRQRGAT---SVHVLSFDAQDLDTHRELV 68 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CC-----EEEEE----eCCHHHHHHHHHHHHhccCC---ceEEEEcccCCHHHHHHHH
Confidence 578999999999999999984 42 25552 45667777777777532100 111 1111 1
Q ss_pred ---ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ---YELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|...... .+. .+.+..|. .+.+.+.+.+.+. +.++.|++++.-
T Consensus 69 ~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 138 (246)
T PRK05599 69 KQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQ-TAPAAIVAFSSI 138 (246)
T ss_pred HHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCCCEEEEEecc
Confidence 223456899999888642211 111 12233332 2333444555543 235777777754
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=2.3 Score=40.19 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||++++..|+..+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35899999999999999999998774
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.67 Score=51.45 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh--hhHHHHHHHHhcccCCCcccEEEe-cC--ccc--
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIG-IN--PYE-- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~--~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e-- 168 (442)
++||.|+||+|.||++++..|+..+. +. .|.. + ++.. ..+..... .. . ..++.+. .| +.+
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~-~~--~V~~--~--d~~~~~~~~~~l~~-~~--~---~~~v~~~~~Dl~d~~~~ 72 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYP-DY--KIVV--L--DKLDYCSNLKNLNP-SK--S---SPNFKFVKGDIASADLV 72 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCC-CC--EEEE--E--eCCCccchhhhhhh-cc--c---CCCeEEEECCCCChHHH
Confidence 57999999999999999999998642 11 1322 2 2110 11111100 00 0 0122221 11 111
Q ss_pred --c--cCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 --L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 --a--l~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
. ..+.|+||.+|+...... ....+....|..-...+.+.+++. +.-..+|.+|-
T Consensus 73 ~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~SS 132 (668)
T PLN02260 73 NYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVST 132 (668)
T ss_pred HHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1 257999999988643211 123456677887778888877774 22235666664
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=3.5 Score=39.20 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
...+.|+||++++|..++..|+..|. .+.+ .+++.+.++..+.++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-----TLIL----CDQDQSALKDTYEQCS 50 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHH
Confidence 35789999999999999999999885 2544 2555666665555443
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.29 Score=54.60 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=55.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
|||.|+||+|.||++++..|+..|. .|.. + ++.... +.+....+. ...+. ....++++++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~--l--dr~~~~-------~~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG--I--AQHPHD-------ALDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCChhh-------cccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999998774 2333 2 221111 000000000 00010 012345678999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||..++.. +.. -...|..-...+.+.+++. + ..++.+|
T Consensus 64 VIHLAa~~--~~~----~~~vNv~Gt~nLleAA~~~-G--vRiV~~S 101 (699)
T PRK12320 64 VIHLAPVD--TSA----PGGVGITGLAHVANAAARA-G--ARLLFVS 101 (699)
T ss_pred EEEcCccC--ccc----hhhHHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 99987642 111 1135666677777777664 2 3555555
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.58 Score=48.44 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|||+ |++|+.++..|+..|+- .|.|.|.|. |....+++..+..|.... +.. ++
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg----~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~i 113 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVG----TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDI-RV 113 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC----EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCC-ee
Confidence 358999995 99999999999999962 255544331 111234555555554433 211 22
Q ss_pred EE-----ec-CcccccCCCcEEEEeCC
Q 013466 161 KI-----GI-NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i-----~~-~~~eal~dADiVIi~ag 181 (442)
.. .. +..+.++++|+||-+..
T Consensus 114 ~~~~~~i~~~~~~~~~~~~DlVid~~D 140 (370)
T PRK05600 114 NALRERLTAENAVELLNGVDLVLDGSD 140 (370)
T ss_pred EEeeeecCHHHHHHHHhCCCEEEECCC
Confidence 21 11 12356899999987643
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.4 Score=40.79 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+++||.+++..|+..|. .+.+. ..++.+.++..+.++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~-----~v~~~---~~~~~~~~~~~~~~~~ 54 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV-----NIAFT---YNSNVEEANKIAEDLE 54 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHH
Confidence 35889999999999999999999775 24442 1234455665555554
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.57 Score=47.36 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=53.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|..-|. .+.. + ++......+ .. ......+..+.+++||+|
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~afG~-----~V~~--~--~~~~~~~~~----~~--------~~~~~~~l~e~l~~aDvv 194 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQTWGF-----PLRC--W--SRSRKSWPG----VQ--------SFAGREELSAFLSQTRVL 194 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--eCCCCCCCC----ce--------eecccccHHHHHhcCCEE
Confidence 6999999 59999999999997664 2333 3 222111110 00 011112457889999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++... .. ..|..++. .+.+.+. ++++++||++
T Consensus 195 v~~lP-----lt------~~T~~li~--~~~l~~m-k~ga~lIN~a 226 (312)
T PRK15469 195 INLLP-----NT------PETVGIIN--QQLLEQL-PDGAYLLNLA 226 (312)
T ss_pred EECCC-----CC------HHHHHHhH--HHHHhcC-CCCcEEEECC
Confidence 99733 11 11223332 2344554 5889999988
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=4.8 Score=38.52 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|+||.+++..|+..|.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 4799999999999999999999874
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.57 E-value=2.9 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.2 Score=45.73 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH-HhcccCCCcccEEEecCcccccCCCcEEEEe
Q 013466 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEWALLI 179 (442)
Q Consensus 109 G~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D-L~~~~~~~~~~v~i~~~~~eal~dADiVIi~ 179 (442)
|..++..|+..|. +|.++ |++.+.++....+ +.. ..+++.++..+++++||+||++
T Consensus 32 G~~MA~~La~aG~-----~V~v~----Dr~~~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIla 88 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVLA----EPNRSILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILF 88 (342)
T ss_pred HHHHHHHHHhCCC-----eEEEE----ECCHHHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEE
Confidence 7778888888773 25554 3444432211111 211 1245556777889999999988
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=3 Score=39.85 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999999874
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=91.49 E-value=3.7 Score=36.16 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=66.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhhHHHHHHHHhcccCCCcccEEEec-C--c------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGI-N--P------ 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~--~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~------ 166 (442)
.+.|+||+|+||..++..|+..+-. .+.+. .++ .+.+.....++.... .++.+.. | +
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~~----~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVILT----SRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEEE----ESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEEe----eecccccccccccccccccc----cccccccccccccccccc
Confidence 5789999999999999999998531 24443 333 445555555554221 1233221 1 1
Q ss_pred -----ccccCCCcEEEEeCCcCCCCCC-c-H----HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 -----YELFEDAEWALLIGAKPRGPGM-E-R----AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~kpg~-~-r----~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+....-|++|..+|.....-. + . ...+..|..-...+.+.+.. . ..+.|++++-..
T Consensus 70 ~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~-~~g~iv~~sS~~ 137 (167)
T PF00106_consen 70 LIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-Q-GGGKIVNISSIA 137 (167)
T ss_dssp HHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-H-TTEEEEEEEEGG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-c-cccceEEecchh
Confidence 2345589999999887652111 1 1 23445554444445555555 3 578888888654
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.17 Score=54.78 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=79.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-----cCCCCCC--CceEEEeccccc--hhhh---HHHHHHHHhcccCCCcccEEEec
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA-----GEVLGPD--QPIALKLLGSER--SLQA---LEGVAMELEDSLFPLLREVKIGI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~-----~~l~~~~--~~I~L~l~d~d~--~~~~---l~g~a~DL~~~~~~~~~~v~i~~ 164 (442)
.||.|.|| |..|..++..|+. .|+-.++ +.|.+ +|.+- ..++ +......+.+ ......
T Consensus 322 ~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~--vD~~GLi~~~r~~~l~~~k~~fa~-------~~~~~~ 391 (581)
T PLN03129 322 QRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWL--VDSKGLVTKSRKDSLQPFKKPFAH-------DHEPGA 391 (581)
T ss_pred ceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEE--EcCCCeEeCCCCccChHHHHHHHh-------hcccCC
Confidence 69999996 9999999998887 3542111 23433 33321 0111 2112111211 111225
Q ss_pred CcccccCC--CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCC
Q 013466 165 NPYELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSI 239 (442)
Q Consensus 165 ~~~eal~d--ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~ 239 (442)
+..|++++ +|++|=+.+.+ |. +-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+
T Consensus 392 ~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~-~rPIIFaLSNPt~~~E~~pe~a~~~T~G- 455 (581)
T PLN03129 392 SLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLN-ERPIIFALSNPTSKAECTAEEAYTWTGG- 455 (581)
T ss_pred CHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcC-CCCEEEECCCCCCCcCcCHHHHHHhhcC-
Confidence 67899999 89988665532 31 2245566667765 889999999996 6677777777633
Q ss_pred CcceeeccchhhHHH
Q 013466 240 PAKNFHALTRLDENR 254 (442)
Q Consensus 240 p~kvig~gT~LDs~R 254 (442)
+-+|.+|+-.+...
T Consensus 456 -~ai~AtGSPf~pv~ 469 (581)
T PLN03129 456 -RAIFASGSPFDPVE 469 (581)
T ss_pred -CEEEEeCCCCCCee
Confidence 34788888766554
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.1 Score=44.42 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=54.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-CCcEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dADiVI 177 (442)
|+|.|++|.||+++...|...|. .+.+. -++..+.... + +. .+..-....+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~il----tR~~~~~~~~---~-~~------~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTIL----TRRPPKASQN---L-HP------NVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEEE----EcCCcchhhh---c-Cc------cccccchhhhcccCCCCEEE
Confidence 67999999999999999998774 24331 3333333221 1 11 1111111122222 799999
Q ss_pred EeCCcCC--CCCC-c-HHhHHHHHHHHHHHHHHHHHhh
Q 013466 178 LIGAKPR--GPGM-E-RAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 178 i~ag~~~--kpg~-~-r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
..||.|- +.+. . ...+...-+..-+.+++.|.+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~ 99 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAAS 99 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999774 3232 2 2334455566666777777753
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.6 Score=43.56 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---------Cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---------~~ 166 (442)
...|.|.||++++|..+++.++..+- .+++.++ |.+..+..+..+.+.-......+.++. .-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl~Di----n~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVLWDI----NKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEEEec----cccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 35888999999999999999999885 2667544 444444444444432000000111211 12
Q ss_pred ccccCCCcEEEEeCCc-CCCCCCc--HH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAK-PRGPGME--RA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~-~~kpg~~--r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...+.|++|..||. +-++.++ +. ..++.| ..+++...+.+.+. .+|.|+.++-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~IaS 173 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIAS 173 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEehh
Confidence 5678899999998885 4455432 22 123333 44678888998884 6887776653
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.64 Score=46.07 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=40.4
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEEeC
Q 013466 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (442)
Q Consensus 101 IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~a 180 (442)
||| .|.+|..++..|+..+. ++.++ |++.++++.. ... ......+..++++++|+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v~----dr~~~~~~~l----~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRVF----DLFPDAVEEA----VAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998774 25553 4454554433 211 1233345667899999999974
Q ss_pred C
Q 013466 181 A 181 (442)
Q Consensus 181 g 181 (442)
.
T Consensus 61 p 61 (288)
T TIGR01692 61 P 61 (288)
T ss_pred C
Confidence 3
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.41 Score=45.13 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 35899999999999999999998874
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.94 Score=44.45 Aligned_cols=131 Identities=15% Similarity=0.029 Sum_probs=75.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCC--CCceEEEecccc--chhhhHHHHHHHHhcccCCCcccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGP--DQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~----~l~~~--~~~I~L~l~d~d--~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e 168 (442)
.||.|+|| |..|-.++..|+.. |+-.+ .+.|.+.|..-= .+.+.+...-..+.+...+ .....+..|
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~----~~~~~~L~e 100 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNP----EKDWGSLLE 100 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSST----TT--SSHHH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcc----cccccCHHH
Confidence 59999996 99999999999887 76210 024555431100 0112233233333332211 111156789
Q ss_pred ccCCC--cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh---HHHHHHHHHCCCCCcce
Q 013466 169 LFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPAKN 243 (442)
Q Consensus 169 al~dA--DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd---~lt~~~~k~s~~~p~kv 243 (442)
+++++ |++|=+.+. +|. +-+++.+.|.+++ ++.+|+-.+||.. ....-+++.+.+ +-+
T Consensus 101 av~~~kPtvLIG~S~~---~g~-----------ft~evv~~Ma~~~-erPIIF~LSNPt~~aE~~peda~~~t~g--~ai 163 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQ---GGA-----------FTEEVVRAMAKHN-ERPIIFPLSNPTPKAECTPEDAYEWTDG--RAI 163 (255)
T ss_dssp HHHCH--SEEEECSSS---TTS-----------S-HHHHHHCHHHS-SSEEEEE-SSSCGGSSS-HHHHHHTTTS--EEE
T ss_pred HHHhcCCCEEEEecCC---CCc-----------CCHHHHHHHhccC-CCCEEEECCCCCCcccCCHHHHHhhCCc--eEE
Confidence 99999 998877663 331 2356667777775 8999999999975 555566666532 134
Q ss_pred eeccch
Q 013466 244 FHALTR 249 (442)
Q Consensus 244 ig~gT~ 249 (442)
|.+|+-
T Consensus 164 ~AtGSp 169 (255)
T PF03949_consen 164 FATGSP 169 (255)
T ss_dssp EEESS-
T ss_pred EecCCc
Confidence 777765
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.35 Score=49.31 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|...|. .|.. + |++..... .. .. . +.. .+..+.+++||+|
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G~-----~V~~--~--d~~~~~~~--~~--~~---~----~~~-~~l~ell~~aDiV 208 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFGM-----RILY--Y--SRTRKPEA--EK--EL---G----AEY-RPLEELLRESDFV 208 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE--E--CCCCChhh--HH--Hc---C----CEe-cCHHHHHhhCCEE
Confidence 6999999 59999999999987664 2433 3 33322211 11 11 1 111 3467789999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++..- ..+. +-.++.+ +.+... .+++++|+++
T Consensus 209 ~l~lP--~t~~---------T~~~i~~--~~~~~m-k~ga~lIN~a 240 (333)
T PRK13243 209 SLHVP--LTKE---------TYHMINE--ERLKLM-KPTAILVNTA 240 (333)
T ss_pred EEeCC--CChH---------HhhccCH--HHHhcC-CCCeEEEECc
Confidence 99743 1111 1122211 233333 5789999987
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.5 Score=40.43 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.64 Score=44.35 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|.||++++..|+..|. .+.+. +++.++++....++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~-----~Vi~~----~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA-----KVVLA----SRRVERLKELRAEIE 54 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 36899999999999999999998774 24442 445556655555543
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.17 Score=49.40 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=46.6
Q ss_pred CEEE-EEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-ccchhhhHHHHHHHHhccc-CCCc-ccEEEecCcccccCC
Q 013466 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSL-FPLL-REVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~-IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d-~d~~~~~l~g~a~DL~~~~-~~~~-~~v~i~~~~~eal~d 172 (442)
.|++ |+||+|.||+-+...|...+.|+ |.. ++ +.++..+-.+.+..-.+.. .|.. ++.++...+.+.|.+
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~----ikv--LgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e 77 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS----IKV--LGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE 77 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce----eee--ecccccccCCceEecccchhcccccchhhhhhHhhcChhhccc
Confidence 4677 99999999999999999888764 322 31 2222222111111101110 0111 344555567889999
Q ss_pred CcEEEEeCC
Q 013466 173 AEWALLIGA 181 (442)
Q Consensus 173 ADiVIi~ag 181 (442)
||+|+...+
T Consensus 78 cDIvfsgld 86 (361)
T KOG4777|consen 78 CDIVFSGLD 86 (361)
T ss_pred ccEEEecCC
Confidence 999998755
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=3.4 Score=39.95 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|++|.|+||+|++|..++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 35799999999999999999998774
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.9 Score=42.27 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=59.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----ccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----ELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----eal 170 (442)
||.|+||+|.||..++..|...+. .+.+.... . ..... ...++.+. . .+.. ..| +. +++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~~~~~-~--~~~~~-~~~~~~~~--~---~~~~~~~D~~~~~~~~~~~ 66 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVVLDNL-S--NGSPE-ALKRGERI--T---RVTFVEGDLRDRELLDRLF 66 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEEEeCC-C--ccchh-hhhhhccc--c---ceEEEECCCCCHHHHHHHH
Confidence 689999999999999999998764 24332111 1 11111 11111110 0 1111 111 11 223
Q ss_pred C--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+ +.|+||..+|....+ .....+.+..|+.....+.+.+.+. +. ..+++++
T Consensus 67 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~s 120 (328)
T TIGR01179 67 EEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GV-KKFIFSS 120 (328)
T ss_pred HhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CC-CEEEEec
Confidence 2 689999988854322 1233455677888888888877764 22 2444444
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=2.5 Score=39.85 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~ 34 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA 34 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.79 Score=48.02 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|+|+ |.||..++..+...|. .+... |++..++. .+.. +.. .+ ....++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV~----d~dp~r~~-~A~~--~G~-------~v-~~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIVT----EVDPIRAL-EAAM--DGF-------RV-MTMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEEE----eCChhhHH-HHHh--cCC-------Ee-CCHHHHHhcCC
Confidence 3469999995 9999999999997664 24443 22333322 1111 111 11 12356789999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+||.+.| |..++..- .+... .+++++++++-.
T Consensus 253 VVItaTG---------------~~~vI~~~--~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATG---------------NKDVIRGE--HFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCC---------------CHHHHHHH--HHhcC-CCCcEEEEECCC
Confidence 9988755 22334331 22222 468899998854
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.73 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|||+ |++|+.++..|+..|+
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gv 66 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGV 66 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 359999995 9999999999999996
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.75 Score=47.94 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|||+ |++|+.++..|+..|+ + .|.|.|.|. |....+++..+..|.+.. +.. ++
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv-g---~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n-p~v-~v 110 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI-G---RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN-PYC-QV 110 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-C---EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC-CCC-eE
Confidence 459999995 9999999999999997 2 255544321 011124444444444333 221 22
Q ss_pred EEec------CcccccCCCcEEEEeCC
Q 013466 161 KIGI------NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~------~~~eal~dADiVIi~ag 181 (442)
.... +..+-++++|+||.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~D~Vvd~~d 137 (390)
T PRK07411 111 DLYETRLSSENALDILAPYDVVVDGTD 137 (390)
T ss_pred EEEecccCHHhHHHHHhCCCEEEECCC
Confidence 2211 12345899999998744
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.71 Score=43.50 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dAD 174 (442)
.++|+|+| .|+||+.++..|...|. .|.+ .|++.++++..+.++. . ..+ +..+.+ .++|
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~-----~Vvv----~D~~~~~~~~~~~~~g-~-------~~v--~~~~l~~~~~D 87 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA-----KLIV----ADINEEAVARAAELFG-A-------TVV--APEEIYSVDAD 87 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHcC-C-------EEE--cchhhccccCC
Confidence 46899999 59999999999999774 2444 2555555554433321 1 111 122333 3799
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+++.++.
T Consensus 88 v~vp~A~ 94 (200)
T cd01075 88 VFAPCAL 94 (200)
T ss_pred EEEeccc
Confidence 9986644
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.9 Score=39.57 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|.||++++..|+..+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=4.8 Score=38.35 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|++|.+++..|+..|.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC
Confidence 5899999999999999999999885
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=90.80 E-value=1 Score=41.40 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+||| .|.||..++..|..-|. .|.. + |+...... ...+. .+. ..+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~~~----~~~~~------~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG--Y--DRSPKPEE----GADEF------GVE-YVSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE--E--ESSCHHHH----HHHHT------TEE-ESSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE--e--cccCChhh----hcccc------cce-eeehhhhcchhhh
Confidence 36999999 59999999999998664 2433 2 33322211 01111 121 2356788999999
Q ss_pred EEEeCC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|++... .+...++= |. +.+.+. ++++++||++--
T Consensus 95 v~~~~plt~~T~~li-------~~-------~~l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRGLI-------NA-------EFLAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTTSB-------SH-------HHHHTS-TTTEEEEESSSG
T ss_pred hhhhhccccccceee-------ee-------eeeecc-ccceEEEeccch
Confidence 999743 22222221 11 122333 578999998843
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.36 Score=48.35 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=71.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcc---cEEEecCc------ccc
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR---EVKIGINP------YEL 169 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~---~v~i~~~~------~ea 169 (442)
.+|.||+.+||-++|..|+.+|+ .+.| +.|++++|+.++.|+++.. ..-. .+.++.++ .+.
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~-----nvvL----IsRt~~KL~~v~kEI~~~~-~vev~~i~~Dft~~~~~ye~i~~~ 121 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGF-----NVVL----ISRTQEKLEAVAKEIEEKY-KVEVRIIAIDFTKGDEVYEKLLEK 121 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHHHHHh-CcEEEEEEEecCCCchhHHHHHHH
Confidence 46899999999999999999996 3555 5889999999999999775 2111 12223333 345
Q ss_pred cCCCcEEEE--eCCcCC-CCCC-------cHHhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 FEDAEWALL--IGAKPR-GPGM-------ERAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 l~dADiVIi--~ag~~~-kpg~-------~r~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+-|+=|+ .+|... -|.. +-.+.+..| ...-+-+.+.+.+ +..|.|++++--
T Consensus 122 l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~--r~~G~IvnigS~ 188 (312)
T KOG1014|consen 122 LAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE--RKKGIIVNIGSF 188 (312)
T ss_pred hcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc--CCCceEEEeccc
Confidence 677777554 455432 2321 111122222 2234445566666 378888888743
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.78 Score=44.01 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..+|.|+||+|+||..++..|+..|.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.4 Score=46.64 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Cccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~e---- 168 (442)
.++|.|+||+|++|.+++..|+..|. .|.+. +++.+.++....++.... .++.+ .. .+.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~ 437 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-----TVFLV----ARNGEALDELVAEIRAKG----GTAHAYTCDLTDSAAVDH 437 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 35799999999999999999998874 25442 455566665555554221 11221 11 1111
Q ss_pred -------ccCCCcEEEEeCCcCCCCCC--------cHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPRGPGM--------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg~--------~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|....... +-...+..|.. +++.+.+.+.+. ..+.|++++-
T Consensus 438 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS 509 (657)
T PRK07201 438 TVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER--RFGHVVNVSS 509 (657)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCEEEEECC
Confidence 23368999999886422110 11223445544 334444555542 3466777764
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.1 Score=40.98 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||..++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999999874
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.87 Score=46.05 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=25.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
||.|||+ |++|..++..|+..|+ + .|.|+|.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv-g---~ItIvD~ 31 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF-G---EIHIIDL 31 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC-C---eEEEEcC
Confidence 6899995 9999999999999996 3 3666543
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.38 Score=47.78 Aligned_cols=74 Identities=24% Similarity=0.194 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+||+|.||||++-.|+..+. +.|++.-+.. +....++|....-..+....-....-++.+|-
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh----~VIa~Dn~ft--------g~k~n~~~~~~~~~fel~~hdv~~pl~~evD~ 94 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGH----EVIALDNYFT--------GRKENLEHWIGHPNFELIRHDVVEPLLKEVDQ 94 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCC----eEEEEecccc--------cchhhcchhccCcceeEEEeechhHHHHHhhh
Confidence 47999999999999999999998883 3455543322 12222344331111122222223457889999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|+..|.
T Consensus 95 IyhLAa 100 (350)
T KOG1429|consen 95 IYHLAA 100 (350)
T ss_pred hhhhcc
Confidence 987654
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.52 Score=47.98 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+|+||+|+||+|-.|..+...|...+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 378999999999999999999998775
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.71 Score=49.15 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|+ |.||..++..+...|. .|.+. +++..++. .+.+ +.. .+ ....++++.+|+
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga-----~VIV~----e~dp~r~~-eA~~--~G~-----~v---v~leEal~~ADV 312 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGA-----RVIVT----EIDPICAL-QALM--EGY-----QV---LTLEDVVSEADI 312 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----eCCchhhH-HHHh--cCC-----ee---ccHHHHHhhCCE
Confidence 469999995 9999999999987664 24442 33333322 1211 111 11 123567899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
||.+.|.. .++. ...+... .+++++++++-+.+.
T Consensus 313 VI~tTGt~---------------~vI~--~e~L~~M-K~GAiLiNvGr~~~e 346 (477)
T PLN02494 313 FVTTTGNK---------------DIIM--VDHMRKM-KNNAIVCNIGHFDNE 346 (477)
T ss_pred EEECCCCc---------------cchH--HHHHhcC-CCCCEEEEcCCCCCc
Confidence 99876521 2221 1223333 578999999986433
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.4 Score=44.14 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe-ccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l-~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+..|++.+|.+.+|+.++...-+.-|+ .+.+.- -+.+.+.+ ....+..+... ....++++.|..++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~-----dv~ia~Pk~~~p~~~-~~~~a~~~a~~---~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM-----DVRIATPKGYEPDPE-VVEKAKENAKE---SGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC-----eEEEECCCcCCcCHH-HHHHHHHHHHh---cCCeEEEecCHHHHhCCC
Confidence 458999999877788877776666554 132210 00111111 22233332211 123788999999999999
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+|..-
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998864
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.88 Score=49.76 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhh---hHHHHHHHHhcccCCCc-ccEEEecCcccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQ---ALEGVAMELEDSLFPLL-REVKIGINPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~---~l~g~a~DL~~~~~~~~-~~v~i~~~~~ea 169 (442)
+..||+|+| .|.+|++++..|+..|+- .|...+.|.. .|.. .+...|.|+.... ... .+.....+..+.
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~----~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v-~v~~i~~~~~~dl~ev 201 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFP----RFHAIVTDAEEHALDRIHELAEIAEETDDAL-LVQEIDFAEDQHLHEA 201 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCC----cEEEEeccccchhhhHHHHHHHHHHHhCCCC-ceEeccCCcchhHHHh
Confidence 456999999 599999999999999974 2544333322 1112 1223333322110 000 011122345788
Q ss_pred cCCCcEEEEeCCcC
Q 013466 170 FEDAEWALLIGAKP 183 (442)
Q Consensus 170 l~dADiVIi~ag~~ 183 (442)
+++.|+||.++..|
T Consensus 202 ~~~~DiVi~vsDdy 215 (637)
T TIGR03693 202 FEPADWVLYVSDNG 215 (637)
T ss_pred hcCCcEEEEECCCC
Confidence 99999999987644
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=4.1 Score=39.06 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||.+++..|+..|.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.71 Score=45.94 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
|||.|+|+.|++|+.|...|. .+. +-+.+ ++.. +|+.+... ..+.++ .-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~----~v~a~-----~~~~-------~Ditd~~~-----------v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF----EVIAT-----DRAE-------LDITDPDA-----------VLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc----eEEec-----cCcc-------ccccChHH-----------HHHHHHhhCCC
Confidence 469999999999999999887 221 11222 2111 33433220 123333 358
Q ss_pred EEEEeCCcCC--CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 175 iVIi~ag~~~--kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+||.+|.+.. +.-.++..-+..|+.-...+++..+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 9999988764 333456777788998889999888875 46666665
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.73 Score=38.82 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=42.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dA 173 (442)
+||+|||+ |.+|......+... +.+ +.+.+ + |++.++++..+... .+..+++..+.++ +.
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~---~v~~v--~--d~~~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDF---EVVAV--C--DPDPERAEAFAEKY---------GIPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTE---EEEEE--E--CSSHHHHHHHHHHT---------TSEEESSHHHHHHHTTE
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCc---EEEEE--E--eCCHHHHHHHHHHh---------cccchhHHHHHHHhhcC
Confidence 58999995 99999998888876 322 11223 2 55555555442222 1235566666666 79
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++..
T Consensus 64 D~V~I~tp 71 (120)
T PF01408_consen 64 DAVIIATP 71 (120)
T ss_dssp SEEEEESS
T ss_pred CEEEEecC
Confidence 99999843
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.9 Score=42.74 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|.|+ |.||..+...|..++.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 479999997 9999999999887653
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.7 Score=43.42 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch---hhhHHHHHHHHhcccCCCcccEEEec-Cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIGI-NP----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~---~~~l~g~a~DL~~~~~~~~~~v~i~~-~~----~ 167 (442)
..++.|+|| |+.+.++++.|+..+.- .|.+. +++ .++++.++.++.+.. . ..+.+.. +. .
T Consensus 124 ~k~vlvlGa-GGaarAi~~~l~~~g~~----~i~i~----nRt~~~~~ka~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 124 GKTMVLLGA-GGASTAIGAQGAIEGLK----EIKLF----NRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 191 (288)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEEE----eCCccHHHHHHHHHHHhhhcc-C--ceEEEechhhhhhhh
Confidence 358999996 99999999999987752 36553 455 346777766664321 1 1122221 11 2
Q ss_pred cccCCCcEEEEeC
Q 013466 168 ELFEDAEWALLIG 180 (442)
Q Consensus 168 eal~dADiVIi~a 180 (442)
+++.++|+||.+-
T Consensus 192 ~~~~~aDivINaT 204 (288)
T PRK12749 192 EALASADILTNGT 204 (288)
T ss_pred hhcccCCEEEECC
Confidence 3677899999863
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.52 Score=48.30 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=53.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-CCcccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~~~~~v~i~~~~~eal~dADi 175 (442)
.+|+||| .|.||..++..|..-|. .|.. + |++..........+..... .+........+..+.++.||+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG~-----~V~~--~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFGV-----KLLA--T--RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE--E--CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence 6999999 59999999999987664 2433 2 3321111100000000000 000000112356789999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|++... ..+. |-.++. .+.+... .|++++|+++
T Consensus 230 Vvl~lP--lt~~---------T~~li~--~~~l~~M-k~ga~lINva 262 (347)
T PLN02928 230 VVLCCT--LTKE---------TAGIVN--DEFLSSM-KKGALLVNIA 262 (347)
T ss_pred EEECCC--CChH---------hhcccC--HHHHhcC-CCCeEEEECC
Confidence 999743 1111 112221 2334443 5889999997
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=4.7 Score=37.97 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|.||..++..|+..|.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~ 30 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA 30 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.5 Score=44.84 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVL 122 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~ 122 (442)
+||+|+||+|.+|..++..|...+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~ 26 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF 26 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc
Confidence 58999999999999999988876643
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.77 Score=46.76 Aligned_cols=74 Identities=24% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
....++|||+ |..+..-+..+..---+ ++|.++ +++.+..+..+.++.... + ..+....+..+++++||
T Consensus 129 da~~laiIGa-G~qA~~ql~a~~~v~~~---~~I~i~----~r~~~~~e~~a~~l~~~~-~--~~v~a~~s~~~av~~aD 197 (330)
T COG2423 129 DASTLAIIGA-GAQARTQLEALKAVRDI---REIRVY----SRDPEAAEAFAARLRKRG-G--EAVGAADSAEEAVEGAD 197 (330)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhhCCc---cEEEEE----cCCHHHHHHHHHHHHhhc-C--ccceeccCHHHHhhcCC
Confidence 3568999995 99988877777653333 346663 667788888888887543 2 24555566789999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 198 iIvt~ 202 (330)
T COG2423 198 IVVTA 202 (330)
T ss_pred EEEEe
Confidence 99875
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.41 Score=48.72 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-+||+|||+ |.||..++..|+. + ++- .|.. + |++.... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~-~-~g~--~V~~--~--d~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAK-G-YGS--DVVA--Y--DPFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHh-c-CCC--EEEE--E--CCCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 369999995 9999999999953 2 221 2333 3 3322211 0100 1222356788999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99974
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=4.1 Score=39.55 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++.|.|+||+|.||.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998874
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.68 Score=46.37 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||.|||| |++|..++..|+..|+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999996
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=5.1 Score=38.95 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|++|.+++..|+..|.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=5.7 Score=37.29 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+|.|+||+|++|.+++..|+..|.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4789999999999999999998773
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.5 Score=44.27 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.||+|+||+|-+|.-++..|...+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 5899999999999999999998765
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.85 E-value=1 Score=45.60 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |..|...+..+....-+ +.+.++ +++.++++..+.++.+.. + .++....+..+++. +|
T Consensus 128 ~~~~vgiiG~-G~qa~~h~~al~~~~~i---~~v~v~----~r~~~~~~~~~~~~~~~~-~--~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIGA-GNQARTQLLALSEVFDL---EEVRVY----DRTKSSAEKFVERMSSVV-G--CDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCc---eEEEEE----CCCHHHHHHHHHHHHhhc-C--ceEEEeCCHHHHhh-CC
Confidence 3579999995 99999988888754322 235553 566677777776665321 1 23455555556676 99
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+|+++-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 999863
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=89.73 E-value=4.9 Score=40.00 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=59.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh-hHHHHHHHHhcccC---CCc-ccEEEecCc------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLF---PLL-REVKIGINP------ 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~-~l~g~a~DL~~~~~---~~~-~~v~i~~~~------ 166 (442)
+|.|+||+|.+|++++..|+..+... .|..... +.+.+ ..+.+...+..... ... .++.+..++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~---~V~~l~R--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 75 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQA---KVICLVR--AASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRL 75 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCC---EEEEEEc--cCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccC
Confidence 58899999999999999999876211 1322111 11111 11111111111000 000 123322211
Q ss_pred -------ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 -------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 -------~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+..+++|+||.+++... ....-.++...|..-...+.+...+. +.. .++.++
T Consensus 76 gl~~~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~-~~~-~~v~iS 135 (367)
T TIGR01746 76 GLSDAEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASG-RAK-PLHYVS 135 (367)
T ss_pred CcCHHHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhC-CCc-eEEEEc
Confidence 223568999999887532 12233445567777677777666653 222 255544
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.3 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.|+||+|++|.+++..|+..|.
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~ 39 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA 39 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 5899999999999999999998874
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.7 Score=43.60 Aligned_cols=67 Identities=18% Similarity=0.012 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+|+ |.+|..++..|...|. .|.+. +++.++.+ .+.++. . +.....+..+.++++|+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v~----~r~~~~~~-~~~~~G-----~--~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA-----NVTVG----ARKSAHLA-RITEMG-----L--SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHH-HHHHcC-----C--eeecHHHHHHHhCCCCE
Confidence 479999995 9999999999998763 25553 44433322 222221 1 11111234577899999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||.+.
T Consensus 214 VI~t~ 218 (296)
T PRK08306 214 IFNTI 218 (296)
T ss_pred EEECC
Confidence 99984
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.7 Score=43.42 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dAD 174 (442)
..+|.|+|| |+.+.++++.|++.|.. .|.+ .+|+.++++.++..+.+.. . .+.. ...+.+...++|
T Consensus 126 ~~~vlilGA-GGAarAv~~aL~~~g~~----~i~V----~NRt~~ra~~La~~~~~~~-~---~~~~~~~~~~~~~~~~d 192 (283)
T COG0169 126 GKRVLILGA-GGAARAVAFALAEAGAK----RITV----VNRTRERAEELADLFGELG-A---AVEAAALADLEGLEEAD 192 (283)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-c---ccccccccccccccccC
Confidence 468999996 99999999999998862 3665 3777788887766665332 1 1111 112233333799
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||.+-
T Consensus 193 liINaT 198 (283)
T COG0169 193 LLINAT 198 (283)
T ss_pred EEEECC
Confidence 999863
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.7 Score=42.27 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|||. |.-|.+.+..|..+|+ ++.+-+.....+.+++ . ++.. .+ ....|+.+.||+
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~-----~V~Vglr~~s~s~~~A----~--~~Gf-------~v-~~~~eAv~~aDv 63 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV-----NVIVGLREGSASWEKA----K--ADGF-------EV-MSVAEAVKKADV 63 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC------EEEEEE-TTCHHHHHH----H--HTT--------EC-CEHHHHHHC-SE
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC-----CEEEEecCCCcCHHHH----H--HCCC-------ee-ccHHHHHhhCCE
Confidence 469999996 9999999999999997 2544333211121222 2 2221 11 235799999999
Q ss_pred EEEe
Q 013466 176 ALLI 179 (442)
Q Consensus 176 VIi~ 179 (442)
|++.
T Consensus 64 V~~L 67 (165)
T PF07991_consen 64 VMLL 67 (165)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 9987
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.2 Score=45.44 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh-c--ccCC-----Cc-ccEEEecCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-D--SLFP-----LL-REVKIGINP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~-~--~~~~-----~~-~~v~i~~~~ 166 (442)
|+||+|+|+ |.||..++..+...+-+. -+.+. |.+.+.....+.... + ...+ +. ..+.+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~e---Lvav~----d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDME---LVGVA----KTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcE---EEEEE----CCChHHHHHHHHhcCCCccccCccccccccCCceEEcCCh
Confidence 579999997 999999998887654321 12232 333332222222110 0 0000 10 134554445
Q ss_pred ccccCCCcEEEEeCC
Q 013466 167 YELFEDAEWALLIGA 181 (442)
Q Consensus 167 ~eal~dADiVIi~ag 181 (442)
.+.+.++|+||.+.+
T Consensus 73 ~el~~~vDVVIdaT~ 87 (341)
T PRK04207 73 EDLLEKADIVVDATP 87 (341)
T ss_pred hHhhccCCEEEECCC
Confidence 566689999999754
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=5.9 Score=37.39 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.+.|+||+|+||.+++..|+..|.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 4689999999999999999999874
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.96 Score=45.99 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-++++||| .|.||..++..+..-|. +|.. + ++... .+ ...++ ..+. .+..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~~Fgm-----~v~y--~--~~~~~-~~-~~~~~---------~~~y-~~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLKGFGM-----KVLY--Y--DRSPN-PE-AEKEL---------GARY-VDLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhcCCC-----EEEE--E--CCCCC-hH-HHhhc---------Ccee-ccHHHHHHhCCE
Confidence 36999999 69999999999883222 2433 3 32221 11 11111 1122 237899999999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
|++..
T Consensus 204 i~l~~ 208 (324)
T COG1052 204 ISLHC 208 (324)
T ss_pred EEEeC
Confidence 99874
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.5 Score=52.90 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
.++||++|| .|.+|..++..|+..|. ++..+ |++.++++.. .+.. .....+..+.+++||
T Consensus 323 ~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v~----dr~~~~~~~l----~~~G------a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 323 PVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCGY----DVYKPTLVRF----ENAG------GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH----HHcC------CeecCCHHHHHhcCC
Confidence 357999999 69999999999998874 24443 4454554432 2111 122344567889999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 383 vVi~~V~ 389 (1378)
T PLN02858 383 VLVIMVA 389 (1378)
T ss_pred EEEEecC
Confidence 9999754
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.9 Score=40.84 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=40.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC----cccccCCC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN----PYELFEDA 173 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~----~~eal~dA 173 (442)
|+|+||+|++|..++..|...+. +|..... +.+.+. +..|.+. + ..+. ...+ ..++|+|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~l~R--~~~~~~----~~~l~~~--g--~~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRALVR--DPSSDR----AQQLQAL--G--AEVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEEEES--SSHHHH----HHHHHHT--T--TEEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEEEEe--ccchhh----hhhhhcc--c--ceEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999553 3544222 211122 2223322 1 1111 1111 25679999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|.|+++-+
T Consensus 66 d~v~~~~~ 73 (233)
T PF05368_consen 66 DAVFSVTP 73 (233)
T ss_dssp SEEEEESS
T ss_pred ceEEeecC
Confidence 99998755
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=88.86 E-value=6.2 Score=36.95 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+.|+||+|++|..++..|+..|.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999998774
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.84 E-value=3.8 Score=40.32 Aligned_cols=88 Identities=22% Similarity=0.217 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCc--------------------hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH-HHHHhcccC
Q 013466 96 MVNIAVSGAAGM--------------------IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLF 154 (442)
Q Consensus 96 ~~KI~IIGA~G~--------------------VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~-a~DL~~~~~ 154 (442)
++||+|-|| |+ =|+.+|...+..|. .++|- |.|.+-.+-. -..++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH-----DVVLa----ePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH-----DVVLA----EPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC-----cEEee----cCCccccCHHHHHHHHhc--
Confidence 478888885 65 26667777777663 36663 4443332211 1112332
Q ss_pred CCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh
Q 013466 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (442)
Q Consensus 155 ~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~ 210 (442)
.+.+++|+.++.+.+.+.|+.--. | +.+..|.++|...+.+
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFTPF----G-------k~T~~Iarei~~hvpE 109 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFTPF----G-------KATFGIAREILEHVPE 109 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEeccc----c-------hhhHHHHHHHHhhCcC
Confidence 478889999999999998875221 1 2345777777765444
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.91 Score=48.39 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|. |.||..++..|...|. .|.++ +++..+.. .+.. +. +.. ....+.++.||+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~Ga-----~ViV~----e~dp~~a~-~A~~--~G-------~~~-~~leell~~ADI 312 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGFGA-----RVVVT----EIDPICAL-QAAM--EG-------YQV-VTLEDVVETADI 312 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----eCCchhHH-HHHh--cC-------cee-ccHHHHHhcCCE
Confidence 469999995 9999999999987664 24443 22222221 1111 11 111 134578899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|+.+.|. ..++. ...+... +|++++++++-.
T Consensus 313 VI~atGt---------------~~iI~--~e~~~~M-KpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGN---------------KDIIT--LEHMRRM-KNNAIVGNIGHF 343 (476)
T ss_pred EEECCCc---------------ccccC--HHHHhcc-CCCcEEEEcCCC
Confidence 9997552 12222 1223333 588999999865
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.2 Score=47.67 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC---------c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------P 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~---------~ 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... ......++.. .
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD-----RLLII----DRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQI 337 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999884 25442 455556554444332110 0001111100 0
Q ss_pred ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.|++++.-
T Consensus 338 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~ 402 (520)
T PRK06484 338 QARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI 402 (520)
T ss_pred HHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence 122345799999888642 221 121 2345555443333333332221235677887754
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.7 Score=43.28 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal~ 171 (442)
+.||+.|| +|..-.+........+. + ..++-+|+| ++.. ..+..+-.....+..++++.+++ ..+++
T Consensus 121 p~rVaFIG-SGPLPlT~i~la~~~~~-~----~~v~~iD~d--~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~ 191 (276)
T PF03059_consen 121 PSRVAFIG-SGPLPLTSIVLAKQHGP-G----ARVHNIDID--PEAN-ELARRLVASDLGLSKRMSFITADVLDVTYDLK 191 (276)
T ss_dssp --EEEEE----SS-HHHHHHH--HTT-------EEEEEESS--HHHH-HHHHHHHH---HH-SSEEEEES-GGGG-GG--
T ss_pred cceEEEEc-CCCcchHHHHHHHHhCC-C----CeEEEEeCC--HHHH-HHHHHHHhhcccccCCeEEEecchhccccccc
Confidence 45999999 59988776665544332 1 334444444 3322 24433332111223455654433 34678
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEE
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~viv 220 (442)
+.|+|++++-. ||+.. .-.+|+..+++ +..|++.+++
T Consensus 192 ~~DvV~lAalV----g~~~e----~K~~Il~~l~~----~m~~ga~l~~ 228 (276)
T PF03059_consen 192 EYDVVFLAALV----GMDAE----PKEEILEHLAK----HMAPGARLVV 228 (276)
T ss_dssp --SEEEE-TT-----S--------SHHHHHHHHHH----HS-TTSEEEE
T ss_pred cCCEEEEhhhc----ccccc----hHHHHHHHHHh----hCCCCcEEEE
Confidence 99999998643 22211 11345555554 4446666544
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=2.1 Score=45.42 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=63.6
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc
Q 013466 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (442)
Q Consensus 90 ~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea 169 (442)
.+++....||.|+| .|..|.+++..|...|. .+.+.+ .+.. +.......+|.... ..+.......+.
T Consensus 8 ~~~~~~~~~i~v~G-~G~sG~a~a~~L~~~G~-----~V~~~D--~~~~-~~~~~~~~~l~~~g----i~~~~~~~~~~~ 74 (458)
T PRK01710 8 FKKFIKNKKVAVVG-IGVSNIPLIKFLVKLGA-----KVTAFD--KKSE-EELGEVSNELKELG----VKLVLGENYLDK 74 (458)
T ss_pred HhhhhcCCeEEEEc-ccHHHHHHHHHHHHCCC-----EEEEEC--CCCC-ccchHHHHHHHhCC----CEEEeCCCChHH
Confidence 34555567999999 59999999999999885 255532 2211 11111112233211 122222223466
Q ss_pred cCCCcEEEEeCCcCC-CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 FEDAEWALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 l~dADiVIi~ag~~~-kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.++|+||.+.|.+. .|- .....+.+++|+.++- .+.+.. +..+|-+|-..
T Consensus 75 ~~~~dlVV~Spgi~~~~p~--~~~a~~~~i~i~s~~e-~~~~~~--~~~vIaITGTn 126 (458)
T PRK01710 75 LDGFDVIFKTPSMRIDSPE--LVKAKEEGAYITSEME-EFIKYC--PAKVFGVTGSD 126 (458)
T ss_pred hccCCEEEECCCCCCCchH--HHHHHHcCCcEEechH-Hhhhhc--CCCEEEEECCC
Confidence 789999999877653 221 2222345677765543 222322 23455555444
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.3 Score=49.43 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||+|+|+ |++|+.++..|+..|+ ++ +.|.|.
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GV-G~---l~LvD~ 75 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGI-GR---FHIADF 75 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCC-Ce---EEEEcC
Confidence 469999995 9999999999999997 33 555443
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.95 Score=50.83 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||+|+|+ | +|+.++..|+..|++++ |.|.|.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~---l~lvD~ 139 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE---LRLADF 139 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe---EEEEcC
Confidence 369999997 8 99999999999998765 555443
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.8 Score=41.37 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..++.|+||+|+||.+++..|+..|.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35789999999999999999999874
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.6 Score=41.73 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||..++..|+..|.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.38 E-value=7 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G-~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
..++.|+||+| +||..++..|+..|. .|.+. +++.++++....++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~-----~V~~~----~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA-----RVVIS----DIHERRLGETADELA 63 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 45899999887 799999999998874 24442 445555555544443
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.36 E-value=3.2 Score=42.46 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAG 119 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~ 119 (442)
++++||+|+|+ |.||...+..+...
T Consensus 3 ~~~lrVaI~G~-GrIGr~~~r~~~~~ 27 (338)
T PLN02358 3 DKKIRIGINGF-GRIGRLVARVVLQR 27 (338)
T ss_pred CCceEEEEEee-cHHHHHHHHHHhhC
Confidence 34589999995 99999988887764
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.94 Score=42.54 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|.+|.|+||+|++|+.++..|+..|.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~ 26 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW 26 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC
Confidence 35799999999999999999999874
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.30 E-value=2 Score=47.97 Aligned_cols=45 Identities=33% Similarity=0.373 Sum_probs=32.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
++|.|+||+|+||.+++..|++.|. .|.+. +++.+.++....++.
T Consensus 415 kvvLVTGasggIG~aiA~~La~~Ga-----~Vvi~----~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAEGA-----HVVLA----DLNLEAAEAVAAEIN 459 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 5899999999999999999999874 25543 444455555544443
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.47 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||.|+||+|.||++++..|+..+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999998774
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=2.6 Score=40.30 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||..++..|+..|.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999999874
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.55 Score=50.85 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=79.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCC--CceEEEeccccc--hhh--hHHHHHHHHhcccCCCcc--cEEEec
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPD--QPIALKLLGSER--SLQ--ALEGVAMELEDSLFPLLR--EVKIGI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~----~~l~~~~--~~I~L~l~d~d~--~~~--~l~g~a~DL~~~~~~~~~--~v~i~~ 164 (442)
.||.|.|| |..|..++..|+. .|+-.++ +.|.+ +|.+- ..+ .+......+.+...+... .-....
T Consensus 296 ~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~--vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~ 372 (563)
T PRK13529 296 QRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFM--VDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVI 372 (563)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEE--EcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCC
Confidence 69999996 9999999998886 4652111 23433 33321 111 122222222211101000 001124
Q ss_pred CcccccCCC--cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCC
Q 013466 165 NPYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSI 239 (442)
Q Consensus 165 ~~~eal~dA--DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~ 239 (442)
+..|+++++ |++|=+.+. +|. +-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+
T Consensus 373 ~L~e~v~~~kPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~aE~tpe~a~~~T~G- 436 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVSGQ---PGA-----------FTEEIVKEMAAHC-ERPIIFPLSNPTSRAEATPEDLIAWTDG- 436 (563)
T ss_pred CHHHHHhccCCCEEEEecCC---CCC-----------CCHHHHHHHHhcC-CCCEEEECCCcCCCcccCHHHHHHhhcC-
Confidence 568999999 988865553 231 2245666667765 788999999997 4566667776533
Q ss_pred CcceeeccchhhHHH
Q 013466 240 PAKNFHALTRLDENR 254 (442)
Q Consensus 240 p~kvig~gT~LDs~R 254 (442)
+.+|.+|+-.+...
T Consensus 437 -rai~AtGspf~pv~ 450 (563)
T PRK13529 437 -RALVATGSPFAPVE 450 (563)
T ss_pred -CEEEEECCCCCCee
Confidence 35788888766543
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.2 Score=42.47 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||.+++..|+..|.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.52 Score=50.95 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=80.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCC--CceEEEeccccc--hh---hhHHHHHHHHhcccCCCcccEEEecC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPD--QPIALKLLGSER--SL---QALEGVAMELEDSLFPLLREVKIGIN 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~----~~l~~~~--~~I~L~l~d~d~--~~---~~l~g~a~DL~~~~~~~~~~v~i~~~ 165 (442)
.||.+.|| |..|..++..|+. .|+-.++ +.+.+ +|..- .. +.+...-..+.+.... .......+
T Consensus 298 ~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~--vD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~~~~~~ 372 (559)
T PTZ00317 298 QRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYL--VDSKGLVTTTRGDKLAKHKVPFARTDIS--AEDSSLKT 372 (559)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEE--EcCCCeEeCCCCccccHHHHHHhccccc--cccccCCC
Confidence 69999996 9999999988874 5642111 23433 43221 01 1122122222221100 00001246
Q ss_pred cccccCCC--cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch---hHHHHHHHHHCCCCC
Q 013466 166 PYELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIP 240 (442)
Q Consensus 166 ~~eal~dA--DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv---d~lt~~~~k~s~~~p 240 (442)
..|+++++ |++|=+.+.| | -+-+++.+.|.+++ ++.+|.-.+||. +....-+++.+.+
T Consensus 373 L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~-~rPIIFaLSNPt~~aE~tpeda~~~T~G-- 435 (559)
T PTZ00317 373 LEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNV-ERPIIFPLSNPTSKAECTAEDAYKWTNG-- 435 (559)
T ss_pred HHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcC-CCCEEEECCCCCCCCCcCHHHHHhhccC--
Confidence 78999999 9988665533 3 12245666677775 889999999997 6777777777633
Q ss_pred cceeeccchhhHHH
Q 013466 241 AKNFHALTRLDENR 254 (442)
Q Consensus 241 ~kvig~gT~LDs~R 254 (442)
+.+|.+|.-.+...
T Consensus 436 rai~AtGspf~pv~ 449 (559)
T PTZ00317 436 RAIVASGSPFPPVT 449 (559)
T ss_pred CEEEEECCCCCCcc
Confidence 35788888766654
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.6 Score=45.42 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=52.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|.||..++..|..-|. .+.. + |+.....+ ...++ .+....+..+.+++||+|
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~afG~-----~V~~--~--d~~~~~~~-~~~~~---------g~~~~~~l~ell~~sDvV 259 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPFNC-----NLLY--H--DRLKMDPE-LEKET---------GAKFEEDLDAMLPKCDVV 259 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--CCCCcchh-hHhhc---------CceecCCHHHHHhhCCEE
Confidence 5999999 59999999999987553 2333 3 33221111 10000 112223567888999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++... .. ..+-.++- .+.+... ++++++|+++
T Consensus 260 ~l~lP-----lt------~~T~~li~--~~~l~~m-k~ga~lIN~a 291 (386)
T PLN03139 260 VINTP-----LT------EKTRGMFN--KERIAKM-KKGVLIVNNA 291 (386)
T ss_pred EEeCC-----CC------HHHHHHhC--HHHHhhC-CCCeEEEECC
Confidence 99732 11 11112221 1334443 5889999887
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.1 Score=51.58 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||++|| .|.+|..++..|+..|. ++.. + |++.++.+..+. . .........++.++||+
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~-----~v~v--~--dr~~~~~~~l~~----~------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF-----KVQA--F--EISTPLMEKFCE----L------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHHHH----c------CCeecCCHHHHHhcCCE
Confidence 46899999 69999999999998884 2444 2 555555554321 1 12333456788889999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||++.
T Consensus 64 Vi~~l 68 (1378)
T PLN02858 64 LVVVL 68 (1378)
T ss_pred EEEEc
Confidence 99864
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.4 Score=39.85 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.2
Q ss_pred CEEEEEcC--CCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGA--AGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA--~G~VG~~la~~L~~~~l 121 (442)
..+.|+|| +++||..++..|+..|.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~ 34 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGA 34 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCC
Confidence 47899998 78999999999998774
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.8 Score=43.14 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEE-ecC----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKI-GIN----PY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i-~~~----~~ 167 (442)
..++.|+|| |++|.++++.|+..|.- .|.+. +++. ++++..+.++.+.. +. ..+.. ... ..
T Consensus 126 ~k~vlI~GA-GGagrAia~~La~~G~~----~V~I~----~R~~~~~~~a~~l~~~l~~~~-~~-~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 126 GKKLTVIGA-GGAATAIQVQCALDGAK----EITIF----NIKDDFYERAEQTAEKIKQEV-PE-CIVNVYDLNDTEKLK 194 (289)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC----EEEEE----eCCchHHHHHHHHHHHHhhcC-CC-ceeEEechhhhhHHH
Confidence 357999996 99999999999988852 25553 4443 55666665554321 10 01111 111 12
Q ss_pred cccCCCcEEEEeC
Q 013466 168 ELFEDAEWALLIG 180 (442)
Q Consensus 168 eal~dADiVIi~a 180 (442)
+.++.+|+||.+-
T Consensus 195 ~~~~~~DilINaT 207 (289)
T PRK12548 195 AEIASSDILVNAT 207 (289)
T ss_pred hhhccCCEEEEeC
Confidence 3567789999863
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.7 Score=39.89 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG 119 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~ 119 (442)
|+|.|+||+|+||..++..|++.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=87.70 E-value=5 Score=40.07 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
..+.|+||+++||.+++..|+..|.. .|.+. .++.++++..+.++.... .++.. ..| +
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~----~V~l~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~ 71 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEW----HVIMA----CRDFLKAEQAAKSLGMPK----DSYTIMHLDLGSLDSVRQF 71 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCC----EEEEE----eCCHHHHHHHHHHhcCCC----CeEEEEEcCCCCHHHHHHH
Confidence 37889999999999999999988721 24442 444555554544443111 11111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCC----CCCcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ----YELFEDAEWALLIGAKPRG----PGMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~k----pg~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|.... +..+. ...+..|. -+++.+.+.+.+..+..+.|++++-
T Consensus 72 ~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS 143 (314)
T TIGR01289 72 VQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS 143 (314)
T ss_pred HHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence 1123568999998885321 12222 22344453 3455556666653111356666653
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.2 Score=48.29 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=39.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|..-|. .+.. + |+.... ..+.++ .+....+..+.+++||+|
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~--~~~~~~---------g~~~~~~l~ell~~aDvV 197 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFGM-----KVLA--Y--DPYISP--ERAEQL---------GVELVDDLDELLARADFI 197 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--CCCCCh--hHHHhc---------CCEEcCCHHHHHhhCCEE
Confidence 5899999 69999999999987553 2333 3 322111 111111 112223467889999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
++..
T Consensus 198 ~l~l 201 (525)
T TIGR01327 198 TVHT 201 (525)
T ss_pred EEcc
Confidence 9873
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.98 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
-.+|+||| .|+||+.++..|..-|.
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALGI 140 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC
Confidence 46999999 59999999999987664
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.7 Score=41.34 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
|+||+|+||+|.+|..++..+....
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~ 25 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAE 25 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCC
Confidence 4799999977999999999988754
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=0.74 Score=44.42 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998874
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.45 E-value=3.7 Score=41.47 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC---------CcccEEEecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---------LLREVKIGIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~---------~~~~v~i~~~ 165 (442)
|+||+-||| |-||....-.++ .++- |.+..+| .+..+..+.--|-.-..-| ...+.-+.++
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~------i~vtvvd--~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPD------IEVTVVD--ISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTD 71 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCc------eEEEEEe--cCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecc
Confidence 579999996 999875433332 3332 4443333 3333332221111000001 1235556788
Q ss_pred cccccCCCcEEEEeCCcCCC
Q 013466 166 PYELFEDAEWALLIGAKPRG 185 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~k 185 (442)
-+.+++.||+|++....|.|
T Consensus 72 iekai~eadlvfisvntptk 91 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTK 91 (481)
T ss_pred hHHHhhhcceEEEEecCCcc
Confidence 89999999999997766643
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=87.42 E-value=4 Score=38.13 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l 121 (442)
|.|+|++|.+|..++..|+..|.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~ 23 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA 23 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999998874
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.6 Score=50.45 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (442)
..||+|+|+ |++|+.++..|+..|+ ++ |.|.|
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV-G~---I~L~D 363 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI-GN---FNLAD 363 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC-Ce---EEEEc
Confidence 469999995 9999999999999997 43 55544
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.5 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
-.+|+||| .|+||..++..|..-|.
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~ 140 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW 140 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 36899999 59999999999988664
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.8 Score=45.34 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=40.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-----Cccc-cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-----NPYE-LF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-----~~~e-al 170 (442)
|||.|+|+ |.+|..++..|...+. ++.+ +|++.+.++.....+. . .+..+. ...+ .+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-----~v~v----id~~~~~~~~~~~~~~-~------~~~~gd~~~~~~l~~~~~ 63 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-----DVTV----IDTDEERLRRLQDRLD-V------RTVVGNGSSPDVLREAGA 63 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----cEEE----EECCHHHHHHHHhhcC-E------EEEEeCCCCHHHHHHcCC
Confidence 58999996 9999999999998764 2544 2555555543321110 0 111111 1122 38
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.++|.||++.+
T Consensus 64 ~~a~~vi~~~~ 74 (453)
T PRK09496 64 EDADLLIAVTD 74 (453)
T ss_pred CcCCEEEEecC
Confidence 89999998744
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.5 Score=46.97 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.++++|+|+ |++|.+++..|...|. .+.+. +++.++++..+..+... .+...+..++.++|+
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G~-----~V~i~----~R~~~~~~~la~~~~~~--------~~~~~~~~~l~~~Di 393 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAGA-----ELLIF----NRTKAHAEALASRCQGK--------AFPLESLPELHRIDI 393 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhccc--------eechhHhcccCCCCE
Confidence 468999995 9999999999998774 24442 55555655554332110 011122344789999
Q ss_pred EEEeC
Q 013466 176 ALLIG 180 (442)
Q Consensus 176 VIi~a 180 (442)
||.+.
T Consensus 394 VInat 398 (477)
T PRK09310 394 IINCL 398 (477)
T ss_pred EEEcC
Confidence 99874
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.10 E-value=5.9 Score=39.38 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+++.|+||+|+||..++..|+..|.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga 37 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA 37 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999999874
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=86.99 E-value=4.7 Score=47.14 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=48.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.+|.|+|+ |++|..++..|+..|+- .|.|+|.+. |+...+++..+..|.... +. .++.
T Consensus 25 s~VLIiG~-gGLG~EiaKnL~laGVg----~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~V~ 97 (1008)
T TIGR01408 25 SNVLISGM-GGLGLEIAKNLVLAGVK----SVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELN-PY-VHVS 97 (1008)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCC----eEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHC-CC-ceEE
Confidence 58999995 99999999999999973 366654321 111235555554454332 32 1333
Q ss_pred EecC--cccccCCCcEEEEe
Q 013466 162 IGIN--PYELFEDAEWALLI 179 (442)
Q Consensus 162 i~~~--~~eal~dADiVIi~ 179 (442)
...+ +.+-+++.|+||.+
T Consensus 98 ~~~~~l~~e~l~~fdvVV~t 117 (1008)
T TIGR01408 98 SSSVPFNEEFLDKFQCVVLT 117 (1008)
T ss_pred EecccCCHHHHcCCCEEEEC
Confidence 3322 35678999999987
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=6.9 Score=36.74 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..|.|+||+|+||.+++..|+..|.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4689999999999999999998774
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.7 Score=45.35 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=18.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLA 117 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~ 117 (442)
.+|+||| .|+||+.++..|.
T Consensus 166 ktvGIiG-~G~IG~~vA~~l~ 185 (386)
T PLN02306 166 QTVGVIG-AGRIGSAYARMMV 185 (386)
T ss_pred CEEEEEC-CCHHHHHHHHHHH
Confidence 6999999 5999999999986
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.85 E-value=4.9 Score=36.38 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|||+ |.||...+..|...+. .|.+ ++.+. .+.. .++... .+....-..+++.++|+
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga-----~V~V--Isp~~----~~~l-~~l~~i------~~~~~~~~~~dl~~a~l 73 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA-----FVTV--VSPEI----CKEM-KELPYI------TWKQKTFSNDDIKDAHL 73 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--EcCcc----CHHH-HhccCc------EEEecccChhcCCCceE
Confidence 468999996 9999999999998774 2544 22222 1211 122110 12222223567999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||.+-+
T Consensus 74 ViaaT~ 79 (157)
T PRK06719 74 IYAATN 79 (157)
T ss_pred EEECCC
Confidence 988633
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=2.4 Score=44.60 Aligned_cols=112 Identities=17% Similarity=0.160 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.++|.|+|+ |.+|..++..|+..|. .|.+.+ .+. .+.+.....+|... . .++.......+...++|+
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~~d--~~~-~~~~~~~~~~l~~~--~--~~~~~~~~~~~~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVILTD--EKE-EDQLKEALEELGEL--G--IELVLGEYPEEFLEGVDL 71 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEEe--CCc-hHHHHHHHHHHHhc--C--CEEEeCCcchhHhhcCCE
Confidence 468999996 8899999999999885 255532 221 12233223333211 1 112221112245678999
Q ss_pred EEEeCCcCC-CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~-kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||.++|.+. .|. ....-..+++++.......... + ..+|-+|--+
T Consensus 72 vv~~~g~~~~~~~--~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS~ 117 (450)
T PRK14106 72 VVVSPGVPLDSPP--VVQAHKKGIEVIGEVELAYRFS--K-APIVAITGTN 117 (450)
T ss_pred EEECCCCCCCCHH--HHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCCC
Confidence 999888532 221 1111234566666555433332 2 3455555444
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.93 Score=45.61 Aligned_cols=94 Identities=17% Similarity=0.271 Sum_probs=53.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..|..-|. .+.. + |++... +.. . ....+..+.++.||+|
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~afG~-----~V~~--~--~r~~~~---------~~~-----~-~~~~~l~ell~~aDiv 177 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAKAFGM-----NIYA--Y--TRSYVN---------DGI-----S-SIYMEPEDIMKKSDFV 177 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEEE--E--CCCCcc---------cCc-----c-cccCCHHHHHhhCCEE
Confidence 6999999 69999999987766453 2333 2 332110 000 0 0123467888999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC--CchhHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNA 229 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt--NPvd~lt 229 (442)
++..... +. +-.++. .+.+... .|++++|+++ .++|.-+
T Consensus 178 ~~~lp~t--~~---------T~~li~--~~~l~~m-k~ga~lIN~sRG~~vd~~a 218 (303)
T PRK06436 178 LISLPLT--DE---------TRGMIN--SKMLSLF-RKGLAIINVARADVVDKND 218 (303)
T ss_pred EECCCCC--ch---------hhcCcC--HHHHhcC-CCCeEEEECCCccccCHHH
Confidence 9973311 11 111111 2333443 5889999988 4555544
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.61 E-value=0.95 Score=46.81 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe----cCccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~----~~~~eal 170 (442)
...||.|+|+ |.+|...+..+...|. .+.+. |++.++++.....+.. .+... ....+.+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa-----~V~v~----d~~~~~~~~l~~~~g~-------~v~~~~~~~~~l~~~l 228 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA-----TVTIL----DINIDRLRQLDAEFGG-------RIHTRYSNAYEIEDAV 228 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHHHHhcCc-------eeEeccCCHHHHHHHH
Confidence 3568999996 9999999999998774 25553 4444554433222211 11111 1124567
Q ss_pred CCCcEEEEeCCcC
Q 013466 171 EDAEWALLIGAKP 183 (442)
Q Consensus 171 ~dADiVIi~ag~~ 183 (442)
+++|+||.+.+.|
T Consensus 229 ~~aDvVI~a~~~~ 241 (370)
T TIGR00518 229 KRADLLIGAVLIP 241 (370)
T ss_pred ccCCEEEEccccC
Confidence 8999999987543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.38 E-value=5 Score=40.86 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
||+|.|+ |.||..++..|...+
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~ 22 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESG 22 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcC
Confidence 6999996 999999999988754
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.2 Score=45.20 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=39.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|+||+.++..|..-|. ++.. +|.-..++ .. . .+. +....+..+-++.||||
T Consensus 143 kTvGIiG-~G~IG~~va~~l~afgm-----~v~~--~d~~~~~~-~~---~--~~~-------~~~~~~Ld~lL~~sDiv 201 (324)
T COG0111 143 KTVGIIG-LGRIGRAVAKRLKAFGM-----KVIG--YDPYSPRE-RA---G--VDG-------VVGVDSLDELLAEADIL 201 (324)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----eEEE--ECCCCchh-hh---c--ccc-------ceecccHHHHHhhCCEE
Confidence 5999999 59999999999998664 2433 32211111 11 0 111 11123467889999999
Q ss_pred EEe
Q 013466 177 LLI 179 (442)
Q Consensus 177 Ii~ 179 (442)
++.
T Consensus 202 ~lh 204 (324)
T COG0111 202 TLH 204 (324)
T ss_pred EEc
Confidence 885
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.22 E-value=1.2 Score=46.54 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=27.0
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++++.+|.|+||+|.+|.-+...|...|.
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf 104 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF 104 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCC
Confidence 456688999999999999999999999994
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=7.4 Score=40.83 Aligned_cols=25 Identities=28% Similarity=0.142 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.|+||+|+||..++..|+..|.
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga 235 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGA 235 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 442 | ||||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 0.0 | ||
| 7mdh_A | 375 | Structural Basis For Light Acitvation Of A Chloropl | 0.0 | ||
| 1wze_A | 327 | Structural Basis For Alteration Of Cofactor Specifi | 2e-85 | ||
| 1iz9_A | 327 | Crystal Structure Of Malate Dehydrogenase From Ther | 1e-81 | ||
| 1bmd_A | 327 | Determinants Of Protein Thermostability Observed In | 1e-81 | ||
| 1bdm_A | 327 | The Structure At 1.8 Angstroms Resolution Of A Sing | 7e-81 | ||
| 1b8p_A | 329 | Malate Dehydrogenase From Aquaspirillum Arcticum Le | 7e-75 | ||
| 4mdh_A | 334 | Refined Crystal Structure Of Cytoplasmic Malate Deh | 2e-70 | ||
| 5mdh_A | 333 | Crystal Structure Of Ternary Complex Of Porcine Cyt | 2e-70 | ||
| 3d5t_A | 331 | Crystal Structure Of Malate Dehydrogenase From Burk | 4e-70 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 9e-66 | ||
| 3fi9_A | 343 | Crystal Structure Of Malate Dehydrogenase From Porp | 6e-17 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 3e-14 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 7e-10 | ||
| 1a5z_A | 319 | Lactate Dehydrogenase From Thermotoga Maritima (tml | 2e-09 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 5e-09 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 6e-08 | ||
| 2d4a_A | 308 | Structure Of The Malate Dehydrogenase From Aeropyru | 1e-07 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 3e-07 | ||
| 1y6j_A | 318 | L-Lactate Dehydrogenase From Clostridium Thermocell | 3e-07 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 4e-07 | ||
| 1sov_A | 328 | Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap | 9e-07 | ||
| 3czm_A | 326 | T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex | 1e-06 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 1e-06 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 2e-06 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-06 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 2e-06 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 4e-06 | ||
| 1pzg_A | 331 | T.Gondii Ldh1 Complexed With Apad And Sulfate At 1. | 6e-06 | ||
| 1pze_A | 331 | T.gondii Ldh1 Apo Form Length = 331 | 9e-06 | ||
| 3om9_A | 329 | T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex | 1e-05 | ||
| 3pqd_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 4e-05 | ||
| 3pqe_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 6e-05 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 1e-04 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 4e-04 |
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
| >pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375 | Back alignment and structure |
|
| >pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327 | Back alignment and structure |
|
| >pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327 | Back alignment and structure |
|
| >pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327 | Back alignment and structure |
|
| >pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329 | Back alignment and structure |
|
| >pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328 | Back alignment and structure |
|
| >pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331 | Back alignment and structure |
|
| >pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329 | Back alignment and structure |
|
| >pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326 | Back alignment and structure |
|
| >pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 0.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 1e-152 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 1e-152 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 1e-148 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 5e-97 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 1e-16 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 1e-15 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 6e-15 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 3e-14 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 4e-14 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 8e-14 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 8e-14 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 1e-13 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 3e-13 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 4e-13 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 4e-13 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 5e-13 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 9e-13 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 1e-12 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 1e-12 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 2e-12 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 3e-12 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 3e-12 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 3e-12 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 9e-12 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 2e-11 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 3e-11 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 4e-11 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 1e-10 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 2e-10 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 3e-10 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 6e-10 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 7e-10 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 1e-09 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 2e-08 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 6e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 520 bits (1340), Expect = 0.0
Identities = 316/377 (83%), Positives = 345/377 (91%), Gaps = 3/377 (0%)
Query: 66 DPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPD 125
+ + DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G D
Sbjct: 2 EAPATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQD 61
Query: 126 QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRG 185
QPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRG
Sbjct: 62 QPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 121
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
PGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFH
Sbjct: 122 PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFH 181
Query: 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK 305
ALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK K
Sbjct: 182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK 241
Query: 306 WLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 365
WLEE FT T+QK RGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT
Sbjct: 242 WLEEEFTITVQK---RGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTT 298
Query: 366 GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE 425
GNPYGIAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K+E ELLAEKKCVAHLTGE
Sbjct: 299 GNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGE 358
Query: 426 GIAFCDLPEDTMLPGEM 442
G A+CD+PEDTMLPGE+
Sbjct: 359 GNAYCDVPEDTMLPGEV 375
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 435 bits (1120), Expect = e-152
Identities = 154/333 (46%), Positives = 218/333 (65%), Gaps = 8/333 (2%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ K RG +I G
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGK---RGAAIIDARGV 239
Query: 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEL 391
SSAAS A + +D + V T G W + G+ ++G YGI E ++F P ++ +G+Y++
Sbjct: 240 SSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDG-SYGIPEGVIFGFPVTTE-NGEYKI 296
Query: 392 VKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 424
V+ + D + ++RI T ELL E+ V HL G
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQHLLG 329
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 434 bits (1118), Expect = e-152
Identities = 163/329 (49%), Positives = 221/329 (67%), Gaps = 6/329 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ + RG +I+ G SS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ---RGAAIIQARGASS 237
Query: 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVK 393
AAS A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+
Sbjct: 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAK-DGAYRVVE 295
Query: 394 DVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ +++ RKR+ T QELL E + V L
Sbjct: 296 GLEINEFARKRMEITAQELLDEMEQVKAL 324
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-148
Identities = 143/330 (43%), Positives = 201/330 (60%), Gaps = 8/330 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ IW
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 277 GNHSTTQVPDFLNARINGLP----VKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332
GNHS+TQ PD +A++ V E +KD WL+ F T+Q+ RG +IK S
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ---RGAAVIKARKLS 240
Query: 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 392
SA S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P D +++V
Sbjct: 241 SAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIV 299
Query: 393 KDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ + +D+ R+++ T +EL EK+
Sbjct: 300 EGLPINDFSREKMDLTAKELAEEKETAFEF 329
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 5e-97
Identities = 82/328 (25%), Positives = 138/328 (42%), Gaps = 14/328 (4%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ A L P+ L L + LEGVA E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMR-LTPN----LCLY--DPFAVGLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + + L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334
+G H A++NG P+ ++I K E + E Q+V G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 394
S + ++ +++ + + +G Y N G E I+ +M DG +
Sbjct: 238 QSPSYVSIEMIRAAMGGEAF--RWPAGCYVNV--PGF-EHIMMAMETTITKDGVKHSDIN 292
Query: 395 VIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ ++ R + ++ L + V +
Sbjct: 293 QLGNEAERAALKESYSHLAKLRDEVIAM 320
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 24/250 (9%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
G A++L + + K+ G N Y+ E+++ ++ PR PGM R LL IN ++
Sbjct: 43 NGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVM 102
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQL 259
G+ + N VI + NP + + K + +P N LD R + L
Sbjct: 103 QTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKFS-GVP-DNKIVGMAGVLDSARFRTFL 159
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
A + V +V + G H T VP + + G+ +++++K+ K +E + + R
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTR 218
Query: 320 LRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 371
GG ++ SA A+ + + ++ K ++ YG+
Sbjct: 219 SGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILP---------CAAKVKAGMYGL 269
Query: 372 AEDIVFSMPC 381
ED+ +P
Sbjct: 270 DEDLFVGVPT 279
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 32/253 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + + KI G N YE ++++ ++I G PR P M R+ LL +N
Sbjct: 52 QGKALDLNHCMALIGSPAKIFGENNYEYLQNSD--VVIITAGV-PRKPNMTRSDLLTVNA 108
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + + + IP N LD R +
Sbjct: 109 KIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKS-GIP-ANKVCGMSGVLDSARFR 165
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
C L+ GV VS + + G H +P + I G+ + + ++ K E I+
Sbjct: 166 CNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIK 224
Query: 317 KVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
K GG +++ SA A++AV++ A KS++ Y G
Sbjct: 225 KTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLV---------CSTYLTGQ- 274
Query: 369 YGIAEDIVFSMPC 381
Y + ++ +P
Sbjct: 275 YNV-NNLFVGVPV 286
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-15
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 32/253 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G +++ +S + K G N Y E A+ ++I G PR PGM R LL IN
Sbjct: 45 QGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD--VVIVTAGV-PRKPGMSRDDLLGINL 101
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ + G + A VI + NP + K + +P + LD R +
Sbjct: 102 KVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKFS-GLP-AHKVVGMAGVLDSARFR 158
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ + V + V+ + G H + VP + + G+P+ +++K ++ + IQ
Sbjct: 159 YFLSEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQ 217
Query: 317 KVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
+ R G ++ SA A++A+ + ++ K ++ +G
Sbjct: 218 RTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLP---------VAAQLSGQ- 267
Query: 369 YGIAEDIVFSMPC 381
YG+ +D+ +P
Sbjct: 268 YGV-KDMYVGVPT 279
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 3e-14
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 32/253 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ S+ K+ G + Y ++ ++I P P +R+ LL N
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSD--VVIITASI-PGRPKDDRSELLFGNA 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + K + +P N LD +R +
Sbjct: 99 RILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS-GLP-HNKVCGMAGVLDSSRFR 155
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A GV VS I G H VP + + G+P+ IK +E E +
Sbjct: 156 TFIAQHFGVNASDVSANVI-GGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVC 214
Query: 317 KVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
R+ + +A A+ AV + +A K++V + + +
Sbjct: 215 HTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVP---------CSAFCSNH- 264
Query: 369 YGIAEDIVFSMPC 381
YG+ + I +P
Sbjct: 265 YGV-KGIYMGVPT 276
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-14
Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 42/273 (15%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A K L E L +G A+++ +S L + K+ G N Y +++ ++I
Sbjct: 19 LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSD--IVIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N I E + + N +IVV NP + + +
Sbjct: 77 AGL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRS-G 133
Query: 239 IPAKN--FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP 296
+P K LD R + +A++ GV ++ + G H VP + G+P
Sbjct: 134 LP-KERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL-GGHGDAMVPVVKYTTVAGIP 191
Query: 297 VKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSL 348
+ +++ E + +++ R G +++ + SA AS+ V +V+++ K +
Sbjct: 192 ISDLLP-----AETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRV 246
Query: 349 VTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+ V G YGI + +P
Sbjct: 247 LP---------CAVGLEGQ-YGI-DKTFVGVPV 268
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 8e-14
Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 35/252 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++ +V++ G N Y +++ +++ GA PR PGM R L+ +N
Sbjct: 40 QGKALDLYEASPIEGFDVRVTGTNNYADTANSD--VIVVTSGA-PRKPGMSREDLIKVNA 96
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
I ++ N +I+V NP + + + + P + LD R +
Sbjct: 97 DITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAARYRT 154
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A++AGV + V M + G H VP + I+G+PV E I + + +++
Sbjct: 155 FIAMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISGIPVSEFIA-----PDRLAQIVER 208
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPY 369
R GG ++ SA A+ +V+A+ K ++ Y G Y
Sbjct: 209 TRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMP---------VAAYLTGQ-Y 258
Query: 370 GIAEDIVFSMPC 381
G+ DI F +P
Sbjct: 259 GL-NDIYFGVPV 269
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 8e-14
Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GA+G + A L + +++ L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKDLV---------LIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ I + ++++ ++ PR GM R L N +I + K
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAK--KIA 111
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 112 EICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331
I G H + VP I G+P+++ ++ E E I+ V+ +G +I+ G
Sbjct: 172 TRII-GEHGDSMVPLLSATSIGGIPIQKFE---RFKELPIDEIIEDVKTKGEQIIRLKG- 226
Query: 332 SSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
S A+ +++V + K L+T Y +G GI D+ +P
Sbjct: 227 GSEFGPAAAILNVVRCIVNNEKRLLT---------LSAYVDGEFDGI-RDVCIGVPV 273
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 35/252 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ ++ + I G + Y D++ +++ G R PGM R L+ N
Sbjct: 48 KGKALDMLEASPVQGFDANIIGTSDYADTADSD--VVVITAGI-ARKPGMSRDDLVATNS 104
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
+I + + + N ++V+ NP + K A P + LD R +
Sbjct: 105 KIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVLDTARFRT 162
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A + + ++ + G H VP + G+P++ +I +E +++
Sbjct: 163 FIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGGIPLETLIP-----KERLEAIVER 216
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPY 369
R GG ++ G SA A++ V + +A+ + ++ + Y G Y
Sbjct: 217 TRKGGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLP---------AIAYLEGE-Y 266
Query: 370 GIAEDIVFSMPC 381
G D+ +P
Sbjct: 267 GY-SDLYLGVPV 277
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 3e-13
Identities = 58/271 (21%), Positives = 111/271 (40%), Gaps = 39/271 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A + + E + +G A+++ +S + ++ G N Y ED++ + I
Sbjct: 19 VARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSD--VCIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N +I + + + +IVV NP + + + +
Sbjct: 77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEAS-G 133
Query: 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
P + LD R + +A + V V + + G H T VP + G+PV
Sbjct: 134 FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM-GGHGDTMVPLPRYTTVGGIPV 192
Query: 298 KEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVT 350
++I D + E +++ + GG ++ G S+ + A + +A+ K ++
Sbjct: 193 PQLIDDARI-----EEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILP 247
Query: 351 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
Y +G YG+ +D+ +P
Sbjct: 248 ---------CAAYCDGE-YGL-DDLFIGVPV 267
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 42/212 (19%), Positives = 84/212 (39%), Gaps = 19/212 (8%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P+ ++ + DA+ ++I GA + PG R LL+ N
Sbjct: 38 AQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQ--VVILTAGA-NQKPGESRLDLLEKNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
IF E + + + ++V NP + + + AP + T LD R +
Sbjct: 94 DIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP----GQPVIGSGTVLDSARFR 148
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTET 314
+A AGV + G H ++V + +A + G+PV + ++ W E+ +
Sbjct: 149 HLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKI 207
Query: 315 IQKVRLRGGLLIKKWGRSS--AASTAVSIVDA 344
+ R +I+ + + I +A
Sbjct: 208 DEGTRNAAASIIEGKRATYYGIGAALARITEA 239
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 32/250 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + L +++I G N YE ++ +++ G R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSD--IVLVTAGI-GRKPGMTREQLLEANA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
A+ + + A A + V++ NP + + K + LD R
Sbjct: 94 NTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYY 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
++ K GV + V+ + + G H P + + G+P++ ++ +E E + +
Sbjct: 153 ISQKLGVSFKSVNAIVL-GMHGQKMFPVPRLSSVGGVPLEHLMS-----KEEIEEVVSET 206
Query: 319 RLRGGLLIKKWGRSSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 371
G + + G SS A+ V V+A+ K + +Y G YG
Sbjct: 207 VNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYP---------YSLYLQGE-YGY 256
Query: 372 AEDIVFSMPC 381
DIV +P
Sbjct: 257 -NDIVAEVPA 265
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 38/259 (14%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI----GAKPRGPGMERAG----- 192
EG A++L + V + YE A + G + PG +
Sbjct: 47 EGKALDLSHVTSVVDTNVSVRAEYSYE--AALTGADCVIVTAGL-TKVPGKPDSEWSRND 103
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRL 250
LL N +I E G+ + +IVV NP + + + + +P N L
Sbjct: 104 LLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEAS-GVP-TNMICGMACML 160
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
D R + +A V V I G H VP +NG P+++ IKD E+
Sbjct: 161 DSGRFRRYVADALSVSPRDVQATVI-GTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 219
Query: 311 FTETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGV 362
E + ++ GG +++ G+ SA A++AV++ + K ++ V
Sbjct: 220 LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIP---------CSV 270
Query: 363 YTNGNPYGIAEDIVFSMPC 381
Y NG YG+ +D+ +P
Sbjct: 271 YCNGE-YGL-KDMFIGLPA 287
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 32/254 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
L+G M+L+ L + Y + +++ L+I GA + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSK--LVIITAGA-RQQEGESRLNLVQRNV 113
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKN--FHALTRLDENR 254
IF + S K+++V NP + + K + P KN + LD R
Sbjct: 114 NIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFP----KNRVIGSGCNLDSAR 168
Query: 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFT 312
+ + + GV + G H + VP + + G+ +K + +E +
Sbjct: 169 FRYLMGERLGVHPLSCHGWVL-GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWK 227
Query: 313 ETIQKVRLRGGLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGN 367
+ ++V +IK G +S A + + +++ V P G
Sbjct: 228 DVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPI--------STMIKGL 279
Query: 368 PYGIAEDIVFSMPC 381
YGI ED+ S+PC
Sbjct: 280 -YGIKEDVFLSVPC 292
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 1e-12
Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 27/250 (10%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ G M+L+ + V++ Y DA L++ GA + PG R L+ N
Sbjct: 44 VRGDVMDLKHATPYSPTTVRVKAGEYSDCHDA--DLVVICAGA-AQKPGETRLDLVSKNL 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+IF + A + +V NP + A K + + + T LD R +
Sbjct: 101 KIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
L+ V V I G H T++P + +A I G P+K +++ + + +
Sbjct: 160 LSEAFDVAPRSVDAQII-GEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT 218
Query: 319 RLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 371
R +I+ G + A I +A+ + V G Y
Sbjct: 219 RDAAYDIIQAKG--ATYYGVAMGLARITEAIFRNEDAVLTV--------SALLEGE-YEE 267
Query: 372 AEDIVFSMPC 381
ED+ +P
Sbjct: 268 -EDVYIGVPA 276
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 54/270 (20%), Positives = 99/270 (36%), Gaps = 33/270 (12%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI--- 179
+AL + E L + + A ++ + P V + Y E A ++
Sbjct: 19 LALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGAR--AVVLAA 75
Query: 180 GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239
G + PG R LLD N Q+FA+ + + ++V NP + + +
Sbjct: 76 GV-AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLP 133
Query: 240 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
P + + T LD R + LA V V + G H ++V + +A++ G+P+ E
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQVGGVPLLE 192
Query: 300 IIKD--HKWLEEGFTETIQKVRLRGGLLIKKWGRSS---AASTAVSIVDAM---KSLVTP 351
+ E + VR +I+ G + A A +V A+ + V
Sbjct: 193 FAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLA-RLVRAILTDEKGVYT 251
Query: 352 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
+T G+ ++ S+P
Sbjct: 252 V--------SAFTPE-VAGV-LEVSLSLPR 271
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 29/251 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++L P KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 47 TKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD--LVVITAGA-PQKPGETRLDLVNKNL 102
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+I + N +V NP + K + + + T LD R +
Sbjct: 103 KILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS 161
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQK 317
+A V V + G H T+ P + +A I G+ + E +K H + E+ + +
Sbjct: 162 IAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFED 220
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 370
VR +IK G + A+ I A+ ++ V P VY +G YG
Sbjct: 221 VRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPL--------SVYMDGQ-YG 269
Query: 371 IAEDIVFSMPC 381
+ DI P
Sbjct: 270 L-NDIYIGTPA 279
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 32/265 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++LED+ KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 43 TKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD--LVVITAGA-PQKPGESRLDLVNKNL 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I + K + + +V NP + K + + + T LD +R +
Sbjct: 99 NILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVA 157
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
L + V V + G H ++ + A I PV+++ K+ ++ + V
Sbjct: 158 LGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGV 216
Query: 319 RLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 371
R + +I G + + + I A+ ++ V P G Y +G YG+
Sbjct: 217 RNKAYDIINLKG--ATFYGIGTALMRISKAILRDENAVLPV--------GAYMDG-QYGL 265
Query: 372 AEDIVFSMPCRSKGDGDYELVKDVI 396
DI P G G +K +I
Sbjct: 266 -NDIYIGTPAIIGGTG----LKQII 285
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 33/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
EG A++L P R I Y + ++ ++I G P+ PG R LL N
Sbjct: 38 AEGDALDLIHGT-PFTRRANIYAGDYADLKGSD--VVIVAAGV-PQKPGETRLQLLGRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
++ E + ++ + + VIVV NP + LK + P K F + T LD R +
Sbjct: 94 RVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKESGMD--PRKVFGSGTVLDTARLR 150
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH-KWLEEGFTETI 315
+A G V I G H ++VP + A I G+P++ + + K +
Sbjct: 151 TLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFA 209
Query: 316 QKVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
+K + +I++ G + A + A IV+++ K ++T VY
Sbjct: 210 EKTKRAAYEIIERKGATHYAIALAVA-DIVESIFFDEKRVLT---------LSVYLEDY- 258
Query: 369 YGIAEDIVFSMPC 381
G+ +D+ S+P
Sbjct: 259 LGV-KDLCISVPV 270
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 3e-12
Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 39/258 (15%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGM-----ERAGL 193
G A++ + K+ G N Y+ A+ ++I G + PG R L
Sbjct: 42 HGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD--VVIVTAGF-TKAPGKSDKEWNRDDL 98
Query: 194 LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLD 251
L +N +I E G + N +IVV NP + + +++ +P KN LD
Sbjct: 99 LPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS-GVP-KNKIIGLGGVLD 155
Query: 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGF 311
+R K ++ K V V+ + G H V + G+P++E I + +
Sbjct: 156 TSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDAEL 214
Query: 312 TETIQKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVY 363
+ ++ S A+ + + ++ K ++
Sbjct: 215 EAIFDRTVNTALEIVNLHA--SPYVAPAAAIIEMAESYLKDLKKVLI---------CSTL 263
Query: 364 TNGNPYGIAEDIVFSMPC 381
G YG DI P
Sbjct: 264 LEGQ-YGH-SDIFGGTPV 279
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 9e-12
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 32/253 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G M+L + VK YE +DA+ ++ GA + PG R L++ N
Sbjct: 43 AMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDAD--IVCICAGA-NQKPGETRLELVEKNL 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
+IF + A + +V NP + K + P + + T LD R +
Sbjct: 100 KIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLP--KERVIGSGTTLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETI 315
L+ G V I G H T++P + +A + G+PV E+++ + +E + +
Sbjct: 157 FMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIV 215
Query: 316 QKVRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNP 368
V+ +I+K G + A + I A+ ++ + Y +G
Sbjct: 216 DDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTV--------STYLDGQ- 264
Query: 369 YGIAEDIVFSMPC 381
YG +D+ +P
Sbjct: 265 YGA-DDVYIGVPA 276
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 28/251 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM+ + V I Y+ DA L++ GA + PG R L+D N
Sbjct: 44 AIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA--DLVVICAGA-NQKPGETRLDLVDKNI 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF +++ A +V NP + K + + + T LD R +
Sbjct: 101 AIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL-EEGFTETIQK 317
L V V I G H T++P + A I +P++++++ ++
Sbjct: 160 LGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 318 VRLRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 370
VR +I+K G + A + A+ ++ + Y +G YG
Sbjct: 219 VRDAAYQIIEKKG--ATYYGIAMGLARVTRAILHNENAILTV--------SAYLDGL-YG 267
Query: 371 IAEDIVFSMPC 381
D+ +P
Sbjct: 268 E-RDVYIGVPA 277
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM++ L P + ++ + Y +D + +++ GA R PG R L N
Sbjct: 45 AIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCD--VIVVTAGA-NRKPGETRLDLAKKNV 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I E + + + ++VV NP + + K + K + T LD R +
Sbjct: 101 MIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQ 316
L+ K GV V I G H +Q+P + I G + E I D K + EE + +
Sbjct: 160 LSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAE 218
Query: 317 KVRLRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPY 369
V+ G +IK G + A S +IV+ + ++ T G NG Y
Sbjct: 219 DVKTAGATIIKNKGATYYGIAVSIN-TIVETLLKNQNTIRT---------VGTVINGM-Y 267
Query: 370 GIAEDIVFSMPC 381
GI ED+ S+P
Sbjct: 268 GI-EDVAISLPS 278
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 54/314 (17%), Positives = 95/314 (30%), Gaps = 43/314 (13%)
Query: 80 LTYDLKAEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSE 136
L L +E +S+ K I V A GM A +L K A E +AL + +
Sbjct: 8 LIGHLATSQEPRSYNK---ITVVGCDAVGMADAISVLMKDLADE-------VALVDVMED 57
Query: 137 RSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195
+ L+G M+LE L KI Y + ++ ++ + G R L+
Sbjct: 58 K----LKGEMMDLEHGS-LFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQ 112
Query: 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + S + + K + + + LD R
Sbjct: 113 RNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARF 171
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + GV V I G H + + L + ++ +
Sbjct: 172 RYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWDAKLHKDVVDSAYE-----VIKLK 225
Query: 316 QKVRLRGGLLIKKWGRSSA-----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGN 367
GL++ + + + V P
Sbjct: 226 GYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPV--------STMVKDF 277
Query: 368 PYGIAEDIVFSMPC 381
YGI +++ S+PC
Sbjct: 278 -YGIKDNVFLSLPC 290
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 30/253 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
+E ++++ V I G + E+ DA+ +++ G + PG R L+
Sbjct: 45 VEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD--MVVITAGP-RQKPGQSRLELVGAT 100
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257
I L V + N +++ NP + + K + F + T LD R +
Sbjct: 101 VNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRF 159
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTET 314
+A + GV V G H ++VP + +A I G+P+ + + E
Sbjct: 160 LIAQQTGVNVKNVHAYIA-GEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEI 218
Query: 315 IQKVRLRGGLLIKKWGRSS--AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 368
Q+V+ +I G ++ + V I++A+ ++
Sbjct: 219 HQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILP---------VSSMLKDF- 268
Query: 369 YGIAEDIVFSMPC 381
+GI DI S+P
Sbjct: 269 HGI-SDICMSVPT 280
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 52/300 (17%), Positives = 102/300 (34%), Gaps = 54/300 (18%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
++V GAAG + ++ + A EV+ D P G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDT---------VGQAADTNHGI- 52
Query: 155 PLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
++ YE ++ +++ G PR PG R L N I + +L+
Sbjct: 53 AYDSNTRVRQGGYEDTAGSD--VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEH 109
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQLALKAGVFYDK 269
+ + + NP + + A + RLD R + L+ +
Sbjct: 110 -NDDYISLTTSNPVDLLNRHLYE-AGDRS-REQVIGFGGRLDSARFRYVLSEEFDAPVQN 166
Query: 270 VSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKW 329
V + G H QVP F ++G ++ + + + ++ +I++
Sbjct: 167 VEGTIL-GEHGDAQVPVFSKVSVDGTDP-------EFSGDEKEQLLGDLQESAMDVIERK 218
Query: 330 GRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 381
G + A +V+A+ ++ + V G +G ED F +P
Sbjct: 219 G--ATEWGPARGVAHMVEAILHDTGEVLP---------ASVKLEGE-FGH-EDTAFGVPV 265
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 73/354 (20%), Positives = 117/354 (33%), Gaps = 70/354 (19%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+AV GA+G I L L L S +L GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLK------------NSPLVSRLTLYDIAHTPGVAADLSHIETR 50
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + + + ++ PR PGM R L + N I A A A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCP 109
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ + ++ NP N+ K +T LD RA +A G+ +VS
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVS 169
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI--KKW 329
I G+ T +P ++ + T IQ+ G + K
Sbjct: 170 VPVIGGHAGKTIIPLISQCTPKVDFPQDQL-------STLTGRIQE----AGTEVVKAKA 218
Query: 330 GRSSA--------ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFS 378
G SA A S+VDAM + +V + + S PY FS
Sbjct: 219 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECS----FVKSQET--DCPY-------FS 265
Query: 379 MPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG---EGIAF 429
P G + K++ I+ E++++ + + L +G F
Sbjct: 266 TPLLL---GKKGIEKNLGIGK-----ISPFEEKMI--AEAIPELKASIKKGEEF 309
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 6e-10
Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 55/304 (18%)
Query: 86 AEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142
A E K+ K I V G G+ + K A ++ D +
Sbjct: 7 ANHENKTVNK---ITVVGGGELGIACTLAISAKGIADRLVLLDLS------------EGT 51
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G M+LE P ++ ++ G ++ N +F
Sbjct: 52 KGATMDLEIFNLP----NVEISKDLSASAHSK-VVIFTVNSLGSSQSYLDVVQSNVDMFR 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
AL S++ ++V P + K + + LD R + +
Sbjct: 107 ALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNV 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRG 322
I G +V + E + ++ R
Sbjct: 166 LKAQTSGKEVWVI-GEQGEDKVLTWSGQE----------------EVVSHTSQVQLSNRA 208
Query: 323 GLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVF 377
L++ G+ S + + +VD++ K V G Y I ++
Sbjct: 209 MELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSV--------SALAKGY-YDINSEVFL 259
Query: 378 SMPC 381
S+PC
Sbjct: 260 SLPC 263
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-10
Identities = 83/361 (22%), Positives = 134/361 (37%), Gaps = 80/361 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSL----QALEGVAM 147
+ +AV GAAG I G Q +AL L GSE SL GVA+
Sbjct: 1 MKVAVLGAAGGI--------------G--QALALLLKTQLPSGSELSLYDIAPVTPGVAV 44
Query: 148 ELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
+L S P ++K G + E A+ L+ R PGM+R+ L ++N I
Sbjct: 45 DL--SHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102
Query: 206 KALNAVASRNVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + A + ++ NP NT A LK A +T LD R+ +A
Sbjct: 103 QQV-AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAEL 161
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRG 322
G +V I G+ T +P L +++ G+ E+ + ++++ G
Sbjct: 162 KGKQPGEVEVPVIGGHSGVTILP--LLSQVPGVSFT---------EQEVADLTKRIQNAG 210
Query: 323 GLLIK-KWGRSSA--------ASTAVSIVDAM--KSLVTPTPEGDWFSSGVYTNGNPYGI 371
+++ K G SA A +S+V A+ + V + V +G
Sbjct: 211 TEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVE-------CAYVEGDG----- 258
Query: 372 AEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE---GIA 428
FS P +G V++ L + EQ L + + L + G
Sbjct: 259 QYARFFSQPLLLGKNG----VEERKSIGTL----SAFEQNAL--EGMLDTLKKDIALGEE 308
Query: 429 F 429
F
Sbjct: 309 F 309
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 65/350 (18%), Positives = 115/350 (32%), Gaps = 62/350 (17%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+A+ GAAG I L + + L S L GV ++
Sbjct: 11 VAILGAAGGIGQPLAMLMK------------MNPLVSVLHLYDVVNAPGVTADISHMDTG 58
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + ++ PR PGM R L IN I + + A
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCP 117
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
V ++ NP N+ A K A + K +T LD RA +A G+ V
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK-KWG 330
+ G+ T +P ++ + +E + +++ G +++ K G
Sbjct: 178 VPVVGGHAGVTILP-----LLSQVKPPSSFT-----QEEISYLTDRIQNGGTEVVEAKAG 227
Query: 331 RSSA--------ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 382
SA A + + ++ E + SS V P+ F+ R
Sbjct: 228 AGSATLSMAYAAVKFADACLRGLRG-DAGVIECAFVSSQVT--ELPF-------FASKVR 277
Query: 383 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG---EGIAF 429
G + + + + E+ L +K L G +G++F
Sbjct: 278 L---GRNGIEEVYSLGP-----LNEYERIGL--EKAKKELAGSIEKGVSF 317
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 15/211 (7%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEW----ALLIGAKPRGPGMERAGLLDIN 197
++ ++ +D++ L I IN + DA+ I + P +R L
Sbjct: 39 VKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFT 98
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRA 255
+ G L + ++V+ NP + + P K T LD R
Sbjct: 99 SSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVTGFP--AHKVIGTGTLLDTARM 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + VS + G H +Q + R+ G P+ +
Sbjct: 156 QRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRVMGQPIVTLADAGD---IDLAAIE 211
Query: 316 QKVRLRGGLLIKKWGRSSA--ASTAVSIVDA 344
++ R G ++ G +S A++A+ I A
Sbjct: 212 EEARKGGFTVLNGKGYTSYGVATSAIRIAKA 242
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 6e-08
Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 45/252 (17%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
G AM+L + + + KI G Y L + +E +++ G R PGM R L N
Sbjct: 38 AVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSE--IIVVTAGL-ARKPGMTRLDLAHKN 94
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRA 255
I + K + + K++VV NP + I K P +N F +LD R
Sbjct: 95 AGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWK-ESGKP-RNEVFGMGNQLDSQRL 151
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
K +L + I G H + A +G E +
Sbjct: 152 KERLYNAGAR---NIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAV-------------E 195
Query: 316 QKVRLRGGLLIKKWGR------SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 369
VR +IK+ G + ++V+ ++ + + G Y
Sbjct: 196 NDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIP---------TSMILQGE-Y 245
Query: 370 GIAEDIVFSMPC 381
GI E++ +P
Sbjct: 246 GI-ENVAVGVPA 256
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 71/498 (14%), Positives = 136/498 (27%), Gaps = 133/498 (26%)
Query: 32 SLRRRAFRPIIGPRNPTISCSVNQVQAPVAVEQDDPKSKTNDC------------YGVF- 78
S+ R + I R+ + NQV A V + P K GV
Sbjct: 106 SMMTRMY---IEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 79 ----CLTYDLKAEEETKS-------WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP 127
+ D+ + + W + N + LL+++ D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 128 IALKLLGSE-----RSLQALEGVAMELEDSLFPLLREVKIGINP--YELFE--------- 171
+KL R L + E+ L +L V+ N + F
Sbjct: 221 SNIKLRIHSIQAELRRLLKSK----PYENCLL-VLLNVQ---NAKAWNAFNLSCKILLTT 272
Query: 172 -DAEWA-LLIGAKPRGPGME--RAGLLDING-QIFAEQGKALNAVASRNVKVIVVGNPCN 226
+ L A ++ L + K L+ + ++ NP
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRR 329
Query: 227 TNALI--CLKNAPSIPAKNFHALT--RLDENRAKCQLALKA----------GVFYD--KV 270
++I +++ + N+ + +L L+ VF +
Sbjct: 330 L-SIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 271 SNMTI---WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327
+ + W + + V + N L +++ K +E + + L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVV----NKLHKYSLVE--KQPKES------TISIPSIYLEL 435
Query: 328 KWGRSSAASTAVSIVDAMK--------SLVTPTPEGDWFSSGVY--TNGNPYGIAE---- 373
K + + SIVD L+ P + ++S + N
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 374 ---DIVF--------SMPCRSKGD-----GDYELVKDVIFD-DYLRKRIAKTEQELL--A 414
D F S + G + K I D D +R+ + L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 415 EKKCVAHLTGEGIAFCDL 432
E+ + + DL
Sbjct: 556 EENLICS------KYTDL 567
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 100.0 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 100.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 100.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 100.0 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 99.98 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 99.97 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.31 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.12 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.04 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.03 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 97.97 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.97 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.94 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 97.9 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 97.9 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.89 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 97.85 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.83 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.78 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 97.77 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.76 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.7 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 97.69 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.64 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.64 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.63 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.57 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.56 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 97.55 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.54 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.54 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.54 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.54 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.54 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.53 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.53 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.52 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.5 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.47 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.46 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.44 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.42 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.42 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.4 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.38 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.37 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.37 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.35 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 97.34 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.33 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.32 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.28 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.28 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.26 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.26 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.26 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.25 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.24 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.24 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.24 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.21 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.21 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.2 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.18 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.14 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.14 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.13 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.11 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.09 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.07 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.06 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.03 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 97.02 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 97.01 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 96.98 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.94 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.94 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.89 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.89 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 96.87 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.85 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.8 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.79 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.78 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.77 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.77 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.72 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.7 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.69 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.67 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.66 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.66 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.65 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.63 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.63 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.61 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.59 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.58 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.56 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.54 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 96.53 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.53 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.51 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 96.49 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 96.48 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.47 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.44 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.4 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.37 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 96.36 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.36 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.33 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.32 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.27 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 96.27 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 96.26 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.26 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.24 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.23 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.18 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 96.18 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.16 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.12 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.12 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 96.08 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.03 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.03 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 96.03 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.01 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.01 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.01 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.01 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 95.98 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 95.96 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.96 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.96 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 95.95 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 95.95 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.94 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 95.94 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 95.93 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 95.92 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.92 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 95.92 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 95.91 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.91 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.91 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.87 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 95.85 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 95.84 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 95.84 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 95.84 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 95.84 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 95.84 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.84 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 95.82 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.82 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 95.81 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.8 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.8 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.8 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 95.8 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.78 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.78 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 95.75 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.74 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 95.74 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.74 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 95.73 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 95.72 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.72 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.72 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 95.71 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 95.71 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.71 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 95.7 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.69 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 95.68 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 95.68 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.67 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 95.66 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.65 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.65 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 95.65 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.64 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 95.64 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.64 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 95.63 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.62 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.62 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 95.62 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 95.61 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.6 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 95.58 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 95.58 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.56 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 95.55 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.55 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.54 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.54 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.53 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 95.53 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.52 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 95.51 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 95.5 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.5 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 95.5 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 95.49 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 95.49 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 95.49 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 95.49 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.49 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 95.49 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 95.48 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.48 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 95.47 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 95.46 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 95.46 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 95.45 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.45 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 95.45 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.45 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.44 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 95.44 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.43 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.43 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.38 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 95.36 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.36 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 95.34 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.34 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.34 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.33 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 95.31 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.31 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 95.31 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 95.31 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 95.31 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 95.3 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.3 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 95.3 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.29 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.29 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.28 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 95.28 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.25 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.25 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 95.25 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.24 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 95.24 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.23 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 95.22 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 95.22 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 95.21 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.21 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 95.21 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 95.2 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 95.2 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 95.19 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 95.19 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 95.19 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.18 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.18 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.17 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.17 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.17 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 95.16 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 95.16 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 95.15 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.14 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.14 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 95.12 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 95.11 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.09 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.08 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.08 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.08 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.07 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.05 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 95.04 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.03 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.99 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.98 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.98 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.96 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.96 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 94.95 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 94.95 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 94.95 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.94 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 94.93 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.92 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 94.9 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.9 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.89 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 94.89 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 94.86 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.83 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 94.83 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 94.83 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.82 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 94.77 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 94.77 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 93.78 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 94.75 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 94.73 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 94.73 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 94.7 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.68 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 94.67 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 94.67 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.67 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 94.65 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.65 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 94.64 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 94.64 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 94.64 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 94.63 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.63 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 94.62 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 94.6 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 94.6 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 94.59 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 94.59 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 94.57 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.57 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 94.55 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 94.55 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 94.55 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 94.53 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 94.51 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 94.47 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 94.47 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.46 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.46 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.43 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 94.4 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 94.37 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 94.37 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 94.37 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 94.35 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 94.35 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 94.34 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 94.32 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.31 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.26 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 94.26 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.25 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.25 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 94.21 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 94.21 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.21 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 94.18 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 94.18 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 94.17 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 94.15 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 94.14 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 94.09 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.06 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 94.05 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.03 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 94.02 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.02 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 94.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 93.98 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 93.96 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 93.93 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 93.92 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 93.89 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 93.88 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 93.88 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 93.87 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 93.85 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 93.85 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.82 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 93.82 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 93.81 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 93.78 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 93.74 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 93.72 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 93.68 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 93.67 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 93.67 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 93.67 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 93.65 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 93.63 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.62 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 93.58 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 93.55 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 93.55 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 93.52 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 93.39 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.37 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 93.36 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 93.35 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.34 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 93.33 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 93.31 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 93.3 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 93.3 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 93.29 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 93.29 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 93.26 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 93.21 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 93.2 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.2 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 93.17 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 93.16 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 93.16 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 93.15 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 93.14 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 93.13 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.12 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 93.08 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 93.05 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 93.04 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 93.03 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.0 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 92.99 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 92.97 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 92.97 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 92.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 92.86 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 92.85 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 92.85 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 92.81 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 92.77 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 92.76 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.74 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.65 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 92.58 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 92.52 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 92.52 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 92.51 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 92.47 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 92.46 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 92.42 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 92.42 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 92.39 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.38 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 92.36 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.35 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 92.34 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 92.26 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 92.25 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 92.25 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 92.1 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 92.1 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 92.08 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.04 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 92.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 91.94 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 91.93 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 91.92 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 91.86 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 91.86 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 91.84 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 91.75 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 91.63 |
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-91 Score=707.38 Aligned_cols=373 Identities=84% Similarity=1.325 Sum_probs=333.2
Q ss_pred CCCCCCCcceeeEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHH
Q 013466 67 PKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146 (442)
Q Consensus 67 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a 146 (442)
++.+..+||||||++|++..+.+.++|++++||+||||+|+||+++++.|+.+++++++++|.|+|+|++.++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~a 82 (375)
T 7mdh_A 3 APATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 82 (375)
T ss_dssp ------CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH
T ss_pred CccccccceeEEEEEeechhhhhHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHH
Confidence 34456899999999999999999999999999999998899999999999999999998999999999999999999999
Q ss_pred HHHhcccCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 147 ~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|||+|+.+++..++++++++|++++|||+||+++|.||||||+|.||+..|++|+++++++|+++++|++++|++|||+|
T Consensus 83 mDL~h~~~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD 162 (375)
T 7mdh_A 83 MELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN 162 (375)
T ss_dssp HHHHTTTCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred HhHHhhhhhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 99999987777788899999999999999999999999999999999999999999999999998569999999999999
Q ss_pred HHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC
Q 013466 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306 (442)
Q Consensus 227 ~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~ 306 (442)
+||++++|+++++|+|+||+||.||++||+++||+++|++|++|++++||||||+++||+||+++|+|+|+.+++.++.|
T Consensus 163 ~~t~ia~k~sg~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~~~~~ 242 (375)
T 7mdh_A 163 TNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKW 242 (375)
T ss_dssp HHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHH
T ss_pred HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhccchhh
Confidence 99999999998888899999999999999999999999999999987899999999999999999999999998765444
Q ss_pred ChHHHHHHHHHHhhhhHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCC
Q 013466 307 LEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGD 386 (442)
Q Consensus 307 ~~~e~~~~~~~v~~~g~eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~ 386 (442)
.. .++.++++++|++|++.||.++|+++|.+++++|++|+.|+|+++|+|+|++++|++||+|+|+|||+||++|++
T Consensus 243 ~~---~~i~~~v~~~g~eII~~kG~ts~a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~ 319 (375)
T 7mdh_A 243 LE---EEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGD 319 (375)
T ss_dssp HH---HHHHHHHHTHHHHHHHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSS
T ss_pred HH---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCC
Confidence 33 456667777999999999999999899999999999999889999999999999955999999999999999999
Q ss_pred CceeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCCCCC
Q 013466 387 GDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 442 (442)
Q Consensus 387 Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (442)
|+++++++++|+++|+++|++|+++|++|++.+.||++.+.+.|.+++|||+|||.
T Consensus 320 Gv~~iv~~l~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T 7mdh_A 320 GDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPGEV 375 (375)
T ss_dssp SCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHTSSSCCCCCCSTTCC----
T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCC
Confidence 99999966999999999999999999999999999999999999999999999984
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-69 Score=540.52 Aligned_cols=325 Identities=44% Similarity=0.692 Sum_probs=292.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|+||+|+||+++++.|+.++++++++++.|+|+|++.++++++|.++||+|+.+++...+.++.++|++++|||
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD 81 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence 46899999988999999999999999999889999999987666689999999999987677677888888999999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCe-EEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a-~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~ 253 (442)
+||++||.||+|||+|.|++..|+++++++++++++++ |++ ++|++|||+|++|++++++++++|+++||+||.||++
T Consensus 82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~-~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~ 160 (333)
T 5mdh_A 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA-KKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN 160 (333)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHH
Confidence 99999999999999999999999999999999999996 887 7999999999999999999988888899999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccc--cCcch--hhhhhhccCChHHHHHHHHHHhhhhHHHHHhc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI--NGLPV--KEIIKDHKWLEEGFTETIQKVRLRGGLLIKKW 329 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I--~G~p~--~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~k 329 (442)
||+++||+++|++|++|++++||||||+++||+||+++| +|+|+ .+++.++.|.. +++.++++++|++|++.+
T Consensus 161 R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~---~~~~~~v~~~g~eIi~~k 237 (333)
T 5mdh_A 161 RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLK---GEFITTVQQRGAAVIKAR 237 (333)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHH---THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhccccccH---HHHHHHHHHHHHHHHHcc
Confidence 999999999999999999744699999999999999975 78755 56765544433 355566777999999988
Q ss_pred CCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHH
Q 013466 330 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTE 409 (442)
Q Consensus 330 G~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa 409 (442)
|.++++++|..+++.+++|+.+..+++|+|+|++++|++||+|+|+|||+||++ ++|+++++++++|+++|+++|++|+
T Consensus 238 ~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~l~~sa 316 (333)
T 5mdh_A 238 KLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKMDLTA 316 (333)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHHHHHHH
Confidence 877777788899999999997644578999999999956999899999999999 9999999965999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 013466 410 QELLAEKKCVAHLTG 424 (442)
Q Consensus 410 ~~l~~~~~~~~~~~~ 424 (442)
++|+++++.+.+|++
T Consensus 317 ~~L~~~~~~~~~~l~ 331 (333)
T 5mdh_A 317 KELAEEKETAFEFLS 331 (333)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-68 Score=540.46 Aligned_cols=320 Identities=45% Similarity=0.698 Sum_probs=284.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
..++.||+|+||+|+||+++++.|+++++++.++++.|.|+|++.....++|++|||+|+.+++...+.++++++++++|
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~ 100 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG 100 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC
Confidence 34467999999999999999999999999998888899999888777889999999999988887788899999999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCC-CCCcceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAP-SIPAKNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~-~~p~kvig~gT~LD 251 (442)
||+||+++|.||||||+|.||+..|++|+++++++|+++|+|+++|+++|||+|+++++++++.. .+++|+||++|.||
T Consensus 101 advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LD 180 (345)
T 4h7p_A 101 VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLD 180 (345)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchh
Confidence 99999999999999999999999999999999999999987899999999999999999988664 46679999999999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++|++++||+++|++|++|++++||||||+++||+||+++|+|+|+.+++.++ |..+ +++++++++|++|++.||.
T Consensus 181 s~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~~-~~~~---~~~~~v~~~g~eIi~~kg~ 256 (345)
T 4h7p_A 181 HNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDD-ALDD---DFVQVVRGRGAEIIQLRGL 256 (345)
T ss_dssp HHHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC----------HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcchh-hHHH---HHHHHHHhhhhhhhhcCCC
Confidence 99999999999999999999878999999999999999999999999987543 2222 4566777799999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeC-CCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN-GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~-G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
++++++|.++++++++|+.+.++..+++++++++ | +||+|+|+|||+||+++ +|.+++++.+.|+++|+++|++|++
T Consensus 257 ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g-~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~s~~ 334 (345)
T 4h7p_A 257 SSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDEN-PYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLASTIA 334 (345)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTC-TTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCC-CcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 8888899999999999998877788888888885 7 89999999999999998 6888998789999999999999999
Q ss_pred HHHHHHHH
Q 013466 411 ELLAEKKC 418 (442)
Q Consensus 411 ~l~~~~~~ 418 (442)
+|++|++.
T Consensus 335 ~L~~E~~~ 342 (345)
T 4h7p_A 335 ELQEERAQ 342 (345)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=521.00 Aligned_cols=310 Identities=22% Similarity=0.321 Sum_probs=259.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
++++||+|||| |+||+++++.|+..+++++ +.| + |+++++++|+++||+|+. ++..++++++++|++++||
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l~l--~--D~~~~k~~g~a~DL~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE---IGI--V--DIFKDKTKGDAIDLEDAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EEE--E--eCChHHHHHHHhhHhhhh-hhcCCcEEEECcHHHhcCC
Confidence 45689999996 9999999999999998764 666 3 456789999999999987 4545677888899999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.||+|||+|.||+.+|++|+++++++|+++| |++|++++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPvdi~t~~~~k~~-g~p~~rviG~gt~LD~ 155 (326)
T 3vku_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCchHHHHHHHHHhc-CCCHHHeeeecccCcH
Confidence 999999999999999999999999999999999999996 99999999999999999999998 5766 88999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc-CChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~-~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
+|++++||+++|++|++|++ |||||||+++||+||+++|+|+|+.+++.+.. +++++++++.++++++|++|+++||.
T Consensus 156 ~R~~~~la~~lgv~~~~V~~-~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kG~ 234 (326)
T 3vku_A 156 ARFRQSIAKMVNVDARSVHA-YIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGA 234 (326)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHCeE-EEEcCCCCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999996 99999999999999999999999999886532 24567788888899999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ +|.++++++.+|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|++++++ ++|+++|+++|++|+++
T Consensus 235 t~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~v~~s~P~~lg~~Gv~~iv~-l~L~~~E~~~l~~sa~~ 308 (326)
T 3vku_A 235 TFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGL-NDIYIGTPAVINRNGIQNILE-IPLTDHEEESMQKSASQ 308 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEEE-GGGE-EEEEEEEEEEEETTEEEEECC-CCCCHHHHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHh--cCCCceEEEEeeccC-ccCC-CceEEEEEEEEcCCceEEEec-CCCCHHHHHHHHHHHHH
Confidence 8875 5778888888888 478999999999999 7999 599999999999999999994 89999999999999999
Q ss_pred HHHHHHHHHH
Q 013466 412 LLAEKKCVAH 421 (442)
Q Consensus 412 l~~~~~~~~~ 421 (442)
|++.++.+..
T Consensus 309 L~~~~~~~~~ 318 (326)
T 3vku_A 309 LKKVLTDAFA 318 (326)
T ss_dssp HHCC------
T ss_pred HHHHHHHHHH
Confidence 9998887744
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=515.69 Aligned_cols=306 Identities=19% Similarity=0.275 Sum_probs=271.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-CCCcccEEEecCcccccC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFE 171 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-~~~~~~v~i~~~~~eal~ 171 (442)
..+++||+|||| |+||+++++.|+..++.++ +.| + |+++++++|+++||+|+. ++.. ...+.+++|++++
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~e---l~L--~--Di~~~~~~g~a~DL~~~~~~~~~-~~i~~~~d~~~~~ 86 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADE---LAL--V--DVIEDKLKGEMMDLQHGSLFLKT-PKIVSSKDYSVTA 86 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSCHHHHHHHHHHHHHTGGGCSC-CEEEECSSGGGGT
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EEE--E--eCChHHHHHHHHhhhhhhhccCC-CeEEEcCCHHHhC
Confidence 345689999996 9999999999999987653 555 3 456789999999999985 2222 2234467899999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~L 250 (442)
|||+||+++|.||||||+|.||+.+|++|+++++++|+++| |++|++++|||+|++|++++|++ ++|+ |+||+||.|
T Consensus 87 ~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvdi~t~~~~k~s-g~p~~rviG~gt~L 164 (331)
T 4aj2_A 87 NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVSNPVDILTYVAWKIS-GFPKNRVIGSGCNL 164 (331)
T ss_dssp TEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred CCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHHHHHHHHHHh-CCCHHHEEeecccc
Confidence 99999999999999999999999999999999999999995 99999999999999999999998 5776 889999999
Q ss_pred hHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHh
Q 013466 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 251 Ds~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
|++|++++||+++|++|++|++ |||||||+++||+||+++|+|+|+.+++.+. .++.+++.++.++++++|++|++.
T Consensus 165 D~~R~~~~la~~lgv~~~~V~~-~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~ 243 (331)
T 4aj2_A 165 DSARFRYLMGERLGVHPLSCHG-WVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL 243 (331)
T ss_dssp HHHHHHHHHHHHHTSCGGGCBC-CEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHCEE-eEEecCCCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc
Confidence 9999999999999999999996 8999999999999999999999999987532 234556678888899999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
||.++| ++|.++++++.+++ +|++.++|+|++++| +||+++++|||+||++|++|+++++ .++|+++|+++|++|
T Consensus 244 kg~t~~-a~a~a~a~~~~ail--~d~~~~~~vs~~~~g-~ygi~~~v~~s~P~~lg~~Gv~~iv-~l~L~~~E~~~l~~s 318 (331)
T 4aj2_A 244 KGYTSW-AIGLSVADLAESIM--KNLRRVHPISTMIKG-LYGIKEDVFLSVPCILGQNGISDVV-KVTLTPDEEARLKKS 318 (331)
T ss_dssp HSSCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEECTT-GGGCCSCCEEEEEEEEETTEEEEEE-CCCCCHHHHHHHHHH
T ss_pred CCCCch-hHHHHHHHHHHHHH--hCCCCeEEEEEecCC-ccCCcCceEEEEEEEEcCCeeEEEc-cCCCCHHHHHHHHHH
Confidence 999887 46777777777777 588999999999999 7999889999999999999999999 499999999999999
Q ss_pred HHHHHHH
Q 013466 409 EQELLAE 415 (442)
Q Consensus 409 a~~l~~~ 415 (442)
+++|++-
T Consensus 319 ~~~l~~~ 325 (331)
T 4aj2_A 319 ADTLWGI 325 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-65 Score=514.04 Aligned_cols=309 Identities=21% Similarity=0.327 Sum_probs=278.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEecCcccccC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFE 171 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~~~~eal~ 171 (442)
.++++||+|||| |.||+++++.|+..+++++ +.| + |+++++++|+++||+|+. ++. .++++++++|++++
T Consensus 2 ~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~---l~l--~--D~~~~k~~g~a~DL~~~~-~~~~~~v~i~~~~~~a~~ 72 (326)
T 3pqe_A 2 NKHVNKVALIGA-GFVGSSYAFALINQGITDE---LVV--I--DVNKEKAMGDVMDLNHGK-AFAPQPVKTSYGTYEDCK 72 (326)
T ss_dssp CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSCHHHHHHHHHHHHHTG-GGSSSCCEEEEECGGGGT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCce---EEE--E--ecchHHHHHHHHHHHhcc-ccccCCeEEEeCcHHHhC
Confidence 345789999996 9999999999999998753 666 3 456789999999999984 554 46677788899999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~L 250 (442)
|||+||+++|.||+||++|.||+..|++|+++++++|+++| |++|+|++|||+|++|++++|.+ ++|+ |+||+||.|
T Consensus 73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~-p~a~vlvvtNPvd~~t~~~~k~~-g~p~~rviG~gt~L 150 (326)
T 3pqe_A 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASG-FDGIFLVATNPVDILTYATWKFS-GLPKERVIGSGTTL 150 (326)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcCChHHHHHHHHHHhc-CCCHHHEEeecccc
Confidence 99999999999999999999999999999999999999996 99999999999999999999998 5776 889999999
Q ss_pred hHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc-CChHHHHHHHHHHhhhhHHHHHhc
Q 013466 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WLEEGFTETIQKVRLRGGLLIKKW 329 (442)
Q Consensus 251 Ds~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~-~~~~e~~~~~~~v~~~g~eii~~k 329 (442)
|++|++++||+++|++|++|++ |||||||+++||+||+++|+|+|+.+++++.. ++.++++++.++++++|++|+++|
T Consensus 151 D~~R~~~~la~~lgv~~~~V~~-~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k 229 (326)
T 3pqe_A 151 DSARFRFMLSEYFGAAPQNVCA-HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK 229 (326)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHcee-eeeecCCCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCC
Confidence 9999999999999999999996 89999999999999999999999999886532 355677888889999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHH
Q 013466 330 GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTE 409 (442)
Q Consensus 330 G~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa 409 (442)
|.++|+ +|.++++++.+|+ .|+++|+|+|++++| +||++ |+|||+||++|++|+++++ +++|+++|+++|++|+
T Consensus 230 G~t~~a-~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~v~~s~P~~lg~~Gv~~iv-~l~L~~~E~~~l~~s~ 303 (326)
T 3pqe_A 230 GATYYG-VAMSLARITKAIL--HNENSILTVSTYLDG-QYGAD-DVYIGVPAVVNRGGIAGIT-ELNLNEKEKEQFLHSA 303 (326)
T ss_dssp SCCCHH-HHHHHHHHHHHHH--TTCCEEECCEEEEES-GGGCE-EEEEECCEEEETTEEEEEC-CCCCCHHHHHHHHHHH
T ss_pred CCcHHH-HHHHHHHHHHHHh--cCCCcEEEEEEeecc-ccCCC-ceEEEEEEEEcCCceEEEe-cCCCCHHHHHHHHHHH
Confidence 998865 6778888888888 478999999999999 79995 9999999999999999999 4899999999999999
Q ss_pred HHHHHHHHHH
Q 013466 410 QELLAEKKCV 419 (442)
Q Consensus 410 ~~l~~~~~~~ 419 (442)
++|++.++.+
T Consensus 304 ~~l~~~~~~~ 313 (326)
T 3pqe_A 304 GVLKNILKPH 313 (326)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 9999976653
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-65 Score=511.72 Aligned_cols=309 Identities=20% Similarity=0.350 Sum_probs=268.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dADi 175 (442)
|||+|||| |+||+++++.|+..+++++ +.| + |+++++++|+++||+|+.+....++.+. +++|++++|||+
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~e---l~l--~--D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDv 72 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKE---VVM--V--DIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDV 72 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSE---EEE--E--CSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCE
Confidence 69999996 9999999999999998753 666 3 4456789999999999864323344443 588999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.||+|||+|.|++.+|++|+++++++|+++| |+++++++|||+|++|++++|.+ ++|+ |+||+||.||++|
T Consensus 73 Vii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~~-g~p~~rviG~~t~LD~~R 150 (314)
T 3nep_X 73 CIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVANPLDVMTYVAYEAS-GFPTNRVMGMAGVLDTGR 150 (314)
T ss_dssp EEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCSSHHHHHHHHHHHH-TCCGGGEEECCHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCCchhHHHHHHHHhc-CCChHHEEeecCchHHHH
Confidence 9999999999999999999999999999999999995 99999999999999999999988 5765 8999999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
++++||+++|++|++|++ +||||||+++||+||+++|+|+|+.+++ ++++++++.++++++|++|++.||.+.+
T Consensus 151 ~~~~la~~lgv~~~~v~~-~ViG~Hg~t~vp~~S~~~v~g~p~~~~~-----~~~~~~~i~~~v~~~g~eIi~~kg~sa~ 224 (314)
T 3nep_X 151 FRSFIAEELDVSVRDVQA-LLMGGHGDTMVPLPRYTTVGGIPVPQLI-----DDARIEEIVERTKGAGGEIVDLMGTSAW 224 (314)
T ss_dssp HHHHHHHHHTCCGGGEEE-EEEESSGGGEEEEEEEEEETTEEGGGTS-----CHHHHHHHHHHHHTHHHHHHHHHSSCCC
T ss_pred HHHHHHHHhCcCHHHeEE-EEECCCCCcEEeeeecCeECcEehhhcc-----CHHHHHHHHHHHHHhHHHHHhccCCcHH
Confidence 999999999999999996 8999999999999999999999999875 3456778888999999999998885333
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+++|.++++.+.+|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|+++|++
T Consensus 225 ~a~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~lg~~Gv~~v~-~l~L~~~E~~~l~~s~~~l~~ 299 (314)
T 3nep_X 225 YAPGAAAAEMTEAIL--KDNKRILPCAAYCDG-EYGL-DDLFIGVPVKLGAGGVEEVI-EVDLDADEKAQLKTSAGHVHS 299 (314)
T ss_dssp HHHHHHHHHHHHHHH--HTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCCeEEEEEEEecc-ccCC-CceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHHHHHH
Confidence 557777777777777 478999999999999 7999 79999999999999999999 689999999999999999999
Q ss_pred HHHHHHHhhccC
Q 013466 415 EKKCVAHLTGEG 426 (442)
Q Consensus 415 ~~~~~~~~~~~~ 426 (442)
+++.+.++++..
T Consensus 300 ~~~~~~~~l~~~ 311 (314)
T 3nep_X 300 NLDDLQRLRDEG 311 (314)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999999888653
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-65 Score=501.40 Aligned_cols=290 Identities=23% Similarity=0.293 Sum_probs=252.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~~~eal~dADi 175 (442)
|||+|||| |+||+++++.|+.++++++ +.|+ |+++++++|+++||+|+...+..... ..+++|++++|||+
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~e---l~L~----Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDv 72 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IALV----DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEEE----CSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---EEEE----eCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCE
Confidence 79999995 9999999999999999875 6663 55678899999999998743333333 34678999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~ 255 (442)
||++||.||||||+|.||+..|++|+++++++|.++| |+++++++|||+|+||++++|.++.+++|+||+||.||++||
T Consensus 73 VvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~ 151 (294)
T 2x0j_A 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRL 151 (294)
T ss_dssp EEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHHHHHHH
T ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcchhhHHhhHHHcCCChhhEEEeeeEEeHHHH
Confidence 9999999999999999999999999999999999996 999999999999999999999997555699999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchH
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA 335 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~ 335 (442)
+++|++++++++. + .+||||||+++||+||+++++|.+.. +++.++++.+|++|+++||.++|+
T Consensus 152 ~~~l~~~~~~~~~--~-~~V~G~HGdt~vp~~S~~~v~g~~~~-------------~~i~~~~~~~g~eIi~~kGst~~a 215 (294)
T 2x0j_A 152 KERLYNAGARNIR--R-AWIIGEHGDSMFVAKSLADFDGEVDW-------------EAVENDVRFVAAEVIKRKGATIFG 215 (294)
T ss_dssp HHHHHHTTCEEEC--C-CCEEBCSSTTCEECGGGCCEESCCCH-------------HHHHHHHHTHHHHHHHHHSSCCHH
T ss_pred HHHHhhcccCCcc--e-eEEEecCCCcEEEeeeccCCCCchhH-------------HHHHHHHhhhheEEEecCcccchh
Confidence 9999999887653 3 58999999999999999999987532 234456777999999999988763
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHH
Q 013466 336 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415 (442)
Q Consensus 336 s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 415 (442)
+|.++++++++|+ +|+++++|++++++| +||+ +|+|||+||++|++|+ +++ +++|+++|+++|++|++.|++.
T Consensus 216 -~a~a~~~~~~ail--~d~~~v~~~s~~l~g-~yG~-~~v~~s~P~~lg~~Gv-ei~-~l~L~~~E~~~l~~s~~~lk~~ 288 (294)
T 2x0j_A 216 -PAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGI-ENVAVGVPAKLGKNGA-EVA-DIKLSDEEIEKLRNSAKILRER 288 (294)
T ss_dssp -HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE-EEC-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH--cCCCcEEEEEEEEec-CCCC-ccEEEEEEEEEeCCEE-EEe-CCCCCHHHHHHHHHHHHHHHHH
Confidence 6666666666666 589999999999999 7999 7999999999999998 577 6999999999999999999987
Q ss_pred HHH
Q 013466 416 KKC 418 (442)
Q Consensus 416 ~~~ 418 (442)
++.
T Consensus 289 i~~ 291 (294)
T 2x0j_A 289 LEE 291 (294)
T ss_dssp HHT
T ss_pred HHH
Confidence 764
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-64 Score=505.18 Aligned_cols=312 Identities=22% Similarity=0.314 Sum_probs=275.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (442)
+++||+|||| |.||+++++.|+..++. + +.| + |+++++++|+++||+|+........++. ++++++++||
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~---v~l--~--Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~a 74 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLG-D---VVL--F--DIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENS 74 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC-E---EEE--E--CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCc-e---EEE--E--eCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCC
Confidence 3579999995 99999999999998873 2 555 3 4456788999999999863222233332 4679999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.||+|||+|.|++.+|++|+++++++|+++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 75 DvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD~ 152 (321)
T 3p7m_A 75 DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFS-GVPDNKIVGMAGVLDS 152 (321)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEEECHHHHH
T ss_pred CEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhc-CCCHHHEEeeccchHH
Confidence 999999999999999999999999999999999999996 99999999999999999999998 5775 89999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~s 332 (442)
+|++++||+++|++|++|+. +||||||+++||+||+++|+|+|+.+++++..+..++++++.++++++|++|++.+|.+
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~g~g 231 (321)
T 3p7m_A 153 ARFRTFLADELNVSVQQVQA-YVMGGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALLKTG 231 (321)
T ss_dssp HHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCcCHHHceE-eeecCcCCceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhcCCC
Confidence 99999999999999999996 89999999999999999999999999885432356678889999999999999965554
Q ss_pred ch-HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeC-CCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 333 SA-ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN-GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 333 s~-~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~-G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
+. +++|.++++++.+|+ +|+++|+|+|++++ | +||+++|+|||+||++|++|++++ +++|+++|+++|++|++
T Consensus 232 sa~~~~a~a~~~~~~ail--~~~~~v~~~s~~~~~g-~ygi~~~v~~s~P~~~g~~Gv~~v--~l~L~~~E~~~l~~s~~ 306 (321)
T 3p7m_A 232 SAYYAPAAAGIQMAESFL--KDKKMILPCAAKVKAG-MYGLDEDLFVGVPTEISANGVRPI--EVEISDKEREQLQVSIN 306 (321)
T ss_dssp CCCHHHHHHHHHHHHHHH--TTCCEEEEEEEEECTT-GGGCSSCEEEEEEEEEETTEEEEC--CCCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--cCCCcEEEEEEEccCc-ccCCCCCeEEEEEEEEcCCEEEEe--CCCCCHHHHHHHHHHHH
Confidence 43 668888888899888 47889999999999 8 799988999999999999999998 58999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 013466 411 ELLAEKKCVAHLT 423 (442)
Q Consensus 411 ~l~~~~~~~~~~~ 423 (442)
+|+++++.+.+++
T Consensus 307 ~l~~~~~~~~~~l 319 (321)
T 3p7m_A 307 AIKDLNKAAAEIL 319 (321)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-64 Score=501.19 Aligned_cols=315 Identities=19% Similarity=0.281 Sum_probs=276.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
+++.+||+|||| |+||+++++.|+..+++++ |.| + |++++++++.++||.|+. ++..+++++.+++++++|
T Consensus 2 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e---l~L--~--Di~~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~ 72 (318)
T 1ez4_A 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---FVI--V--DVVKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKD 72 (318)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHcCCCCCE---EEE--E--eCCchHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCC
Confidence 445589999997 9999999999999998754 666 4 446689999999999997 555677777789999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
||+||+++|.|++||++|.|++.+|++++++++++|+++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD 150 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKFS-GFPKERVIGSGTSLD 150 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEeccccch
Confidence 9999999999999999999999999999999999999995 99999999999999999999998 5666 8999999999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++|+++++|+++|++|++|+ ++||||||++++|+||+++++|+|+.+++.+..|+++.++++.++++.+++++++++|.
T Consensus 151 ~~R~~~~la~~lgv~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~ 229 (318)
T 1ez4_A 151 SSRLRVALGKQFNVDPRSVD-AYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGA 229 (318)
T ss_dssp HHHHHHHHHHHHTCCGGGEE-CCEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCcChhHEE-EEEecccCCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCCCc
Confidence 99999999999999999999 59999999999999999999999999988665688888889999999999999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ .|.++++.+.+|+ +|++.+++++++++| +||+| |+|||+||++|++|+++++ .++|+++|+++|++|+++
T Consensus 230 t~~~-~a~a~~~~~~ai~--~~~~~~~~vs~~~~G-~yg~~-~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~~ 303 (318)
T 1ez4_A 230 TFYG-IGTALMRISKAIL--RDENAVLPVGAYMDG-QYGLN-DIYIGTPAIIGGTGLKQII-ESPLSADELKKMQDSAAT 303 (318)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHH--hCCCcEEEEEEeecC-ccCCC-ceEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHHH
Confidence 8764 6677778888887 578999999999999 79997 9999999999999999999 589999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 013466 412 LLAEKKCVAHLTGE 425 (442)
Q Consensus 412 l~~~~~~~~~~~~~ 425 (442)
|+++++.+.+++.+
T Consensus 304 l~~~~~~~~~~~~~ 317 (318)
T 1ez4_A 304 LKKVLNDGLAELEN 317 (318)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988754
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-63 Score=498.84 Aligned_cols=315 Identities=21% Similarity=0.294 Sum_probs=276.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
++.+||+|||| |+||+++++.|+..+++++ |.| + |++++++++.++||.|+. ++..+++++.+++++++||
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~e---l~L--~--Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 77 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQE---IGI--V--DIFKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGGC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCE---EEE--E--eCCchHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCCC
Confidence 44589999997 9999999999999998753 666 4 445688999999999987 5556777777899999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.|++||++|.|++.+|++++++++++|+++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 78 DvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~ 155 (326)
T 2zqz_A 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKLS-GFPKNRVVGSGTSLDT 155 (326)
T ss_dssp SEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHHc-CCCHHHEEEccccchH
Confidence 999999999999999999999999999999999999996 99999999999999999999998 5666 89999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhh-hccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~-~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
+|++++||+++|++|++|+ ++||||||++++|+||+++++|+|+.+++. +..|+++++++++++++.+++++++++|.
T Consensus 156 ~R~~~~la~~lgv~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~kG~ 234 (326)
T 2zqz_A 156 ARFRQSIAEMVNVDARSVH-AYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGA 234 (326)
T ss_dssp HHHHHHHHHHHTCCGGGEE-CCEEBSSSTTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCChhheE-EEEecccCCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcCCC
Confidence 9999999999999999999 599999999999999999999999999886 44588778889999999999999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ .|.++++++.+|+ +|++.+++++++++| +||+| |+|||+||++|++|+++++ .++|+++|+++|++|+++
T Consensus 235 t~~~-~a~aa~~~~~ai~--~~~~~~~~vsv~~~G-~yg~~-~~~~svP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~~ 308 (326)
T 2zqz_A 235 TFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGLN-DIYIGTPAVINRNGIQNIL-EIPLTDHEEESMQKSASQ 308 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHH--hCCCcEEEEEEeccC-ccCCC-ceEEEEEEEEcCCeeEEEe-cCCCCHHHHHHHHHHHHH
Confidence 8764 6677788888888 578999999999999 79997 9999999999999999999 589999999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 013466 412 LLAEKKCVAHLTGEG 426 (442)
Q Consensus 412 l~~~~~~~~~~~~~~ 426 (442)
|+++++.+.++++..
T Consensus 309 l~~~~~~~~~~~~~~ 323 (326)
T 2zqz_A 309 LKKVLTDAFAKNDIE 323 (326)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998888653
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-63 Score=496.99 Aligned_cols=309 Identities=21% Similarity=0.292 Sum_probs=267.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccccCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFED 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~d 172 (442)
+++||+|||| |.+|+++++.|+..++. ++.| + |+++++++|+++||+|+.... ..++.. ++++++++|
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~----~v~L--~--Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d~~a~~~ 75 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELG----DVVL--F--DIAEGTPQGKGLDIAESSPVDGFDAKFTG-ANDYAAIEG 75 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCC----EEEE--E--CSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESSGGGGTT
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCC----eEEE--E--eCCchhHHHHHHHHhchhhhcCCCCEEEE-eCCHHHHCC
Confidence 4679999996 99999999999999872 2555 3 445678999999999986311 123444 456899999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
||+||+++|.||+||++|.|++.+|++|+++++++|+++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||
T Consensus 76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~s-g~p~~rviG~~~~LD 153 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFS-GLPAHKVVGMAGVLD 153 (324)
T ss_dssp CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHH
T ss_pred CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhc-CCCHHHEEeecCccH
Confidence 9999999999999999999999999999999999999996 99999999999999999999988 5775 8999999999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++|++++||+++|+++++|+. +||||||+++||+||+++|+|+|+.+++++..+..++++++.++++++|++|++.+|.
T Consensus 154 ~~R~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~gk 232 (324)
T 3gvi_A 154 SARFRYFLSEEFNVSVEDVTV-FVLGGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLKT 232 (324)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCcCHHHCeE-EEEcCCCCceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhcCC
Confidence 999999999999999999996 8999999999999999999999999988543335667888999999999999996554
Q ss_pred Cch-HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 332 SSA-ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 332 ss~-~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
++. +++|.++++++.+|+ +|+++|+|+|++++| +||++ |+|||+||++|++|+++++ +++|+++|+++|++|++
T Consensus 233 gsa~~~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~v~~s~P~~~g~~Gv~~v~-~l~L~~~E~~~l~~s~~ 307 (324)
T 3gvi_A 233 GSAFYAPAASAIQMAESYL--KDKKRVLPVAAQLSG-QYGVK-DMYVGVPTVIGANGVERII-EIDLDKDEKAQFDKSVA 307 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH--cCCCcEEEEEEEecC-ccCCC-ceEEEEEEEEeCCEEEEec-CCCCCHHHHHHHHHHHH
Confidence 333 567888888888888 578999999999999 79995 9999999999999999999 68999999999999999
Q ss_pred HHHHHHHHHHH
Q 013466 411 ELLAEKKCVAH 421 (442)
Q Consensus 411 ~l~~~~~~~~~ 421 (442)
+|++.++.+..
T Consensus 308 ~l~~~~~~~~~ 318 (324)
T 3gvi_A 308 SVAGLCEACIG 318 (324)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999888765
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=502.26 Aligned_cols=312 Identities=26% Similarity=0.327 Sum_probs=271.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+++||+||||+|+||+++++.++..++.++ |.|+ |+++++++|.++||+|+.++. .+++++++.+++++||
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~e---vvLi----Di~~~k~~g~a~DL~~~~~~~-~~i~~t~d~~~al~dA 77 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPN---LCLY----DPFAVGLEGVAEEIRHCGFEG-LNLTFTSDIKEALTDA 77 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSC---EEEE----CSCHHHHHHHHHHHHHHCCTT-CCCEEESCHHHHHTTE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCE---EEEE----eCCchhHHHHHHhhhhCcCCC-CceEEcCCHHHHhCCC
Confidence 3467999999779999999999999998654 6663 456688999999999986432 3677777778999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeE-EEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK-VIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~-vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
|+||+++|.||+|||+|.|++.+|++|+++++++|+++| |+++ ++++|||+|++|++++|+++ +|+ |+| ++|.||
T Consensus 78 DvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd~~t~i~~k~sg-~p~~rv~-g~t~LD 154 (343)
T 3fi9_A 78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPADITGLVTLIYSG-LKPSQVT-TLAGLD 154 (343)
T ss_dssp EEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHHHHHHHHHHHHT-CCGGGEE-EECCHH
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchHHHHHHHHHHcC-CCcceEE-EecCcH
Confidence 999999999999999999999999999999999999996 9996 99999999999999999994 777 565 678999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++||+++||+++|++|++|+++|||||||+++||+||+++|+|+|+.+++....++.+++.++.++++++|++|++.||.
T Consensus 155 s~R~~~~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~ 234 (343)
T 3fi9_A 155 STRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGR 234 (343)
T ss_dssp HHHHHHHHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccCC
Confidence 99999999999999999998569999999999999999999999999987665567778889999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCC-CCHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI-FDDYLRKRIAKTEQ 410 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~-L~~~E~~~L~~sa~ 410 (442)
|+|+++|.++++++++|+ +|++.++|+|++++| +| .+|+|||+||++|++|++.+. ... |+++|+++|++|++
T Consensus 235 ss~~s~A~a~~~~~~ail--~d~~~v~~~s~~~~g-~~--~~~v~~s~P~~lg~~Gv~~~~-~~~ll~~~E~~~l~~Sa~ 308 (343)
T 3fi9_A 235 SSFQSPSYVSIEMIRAAM--GGEAFRWPAGCYVNV-PG--FEHIMMAMETTITKDGVKHSD-INQLGNEAERAALKESYS 308 (343)
T ss_dssp CCCHHHHHHHHHHHHHHT--TSSCCCSCEEEEEEE-TT--EEEEEEEESEEEETTEEEECC-GGGSSCHHHHHHHHHHHH
T ss_pred CcHHhHHHHHHHHHHHHH--hCCCceEEEEEEEeC-CC--cCceEEEeEEEEeCCceEEEe-cCCCCCHHHHHHHHHHHH
Confidence 988889999999999999 467789999999998 34 389999999999999998653 222 89999999999999
Q ss_pred HHHHHHHHHHHh
Q 013466 411 ELLAEKKCVAHL 422 (442)
Q Consensus 411 ~l~~~~~~~~~~ 422 (442)
.|+++++.+.+|
T Consensus 309 ~l~~~~~~~~~l 320 (343)
T 3fi9_A 309 HLAKLRDEVIAM 320 (343)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999999885
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-62 Score=485.70 Aligned_cols=288 Identities=23% Similarity=0.324 Sum_probs=256.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~dAD 174 (442)
|||+|||| |.+|+++++.|+..+++++ +.|+ |+++++++|.++||+|+...+ ..+++.+++ +++++|||
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~---v~L~----D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IALV----DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEEE----CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCe---EEEE----ECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCC
Confidence 69999997 9999999999999998653 6663 556688999999999986322 234555555 99999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.||+|||+|.|++.+|++|+++++++|.++| |++++|++|||+|++|++++|+++ +|+ |+||+||.||++
T Consensus 72 iVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsNPvd~~t~~~~k~~g-~p~~rviG~gt~LD~~ 149 (294)
T 1oju_A 72 IIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESG-KPRNEVFGMGNQLDSQ 149 (294)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSC-CCTTSEEECSHHHHHH
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-CCHHHEeecccccHHH
Confidence 99999999999999999999999999999999999995 999999999999999999999985 665 899999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
||+++|| ++|++|++ + ++||||||+++||+||+++|+|+| +++++.++++++|++|++.||.++
T Consensus 150 R~~~~la-~l~v~~~~-~-~~V~G~Hg~t~vp~~s~~~v~g~~-------------~~~~~~~~v~~~g~eii~~kG~t~ 213 (294)
T 1oju_A 150 RLKERLY-NAGARNIR-R-AWIIGEHGDSMFVAKSLADFDGEV-------------DWEAVENDVRFVAAEVIKRKGATI 213 (294)
T ss_dssp HHHHHHH-HTTCBSCC-C-CCEEBCSSTTCEECGGGCCCBSCC-------------CHHHHHHHHHTTHHHHHHHHSSCC
T ss_pred HHHHHHH-HhCCCccC-c-eEEEecCCCceeeecccceECCcC-------------hHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999 99999999 7 599999999999999999999988 134666778889999999999776
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
| ++|.++++++.+|+ .|+++|+|+|++++| +||++ ++|||+||++|++|++ ++ +++|+++|+++|++|+++|+
T Consensus 214 ~-~~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~-~~~~s~P~~~g~~Gv~-v~-~l~L~~~E~~~l~~s~~~l~ 286 (294)
T 1oju_A 214 F-GPAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGIE-NVAVGVPAKLGKNGAE-VA-DIKLSDEEIEKLRNSAKILR 286 (294)
T ss_dssp H-HHHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEE-EC-CCCCCHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHH--cCCCeEEEEEecccc-cCCCC-ceEEEEEEEEeCCEEE-Ee-cCCCCHHHHHHHHHHHHHHH
Confidence 5 57788888888888 478999999999999 79995 9999999999999999 88 68999999999999999999
Q ss_pred HHHHH
Q 013466 414 AEKKC 418 (442)
Q Consensus 414 ~~~~~ 418 (442)
+.++.
T Consensus 287 ~~~~~ 291 (294)
T 1oju_A 287 ERLEE 291 (294)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 97764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-62 Score=491.14 Aligned_cols=301 Identities=19% Similarity=0.340 Sum_probs=265.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc---ccEEEecCccccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL---REVKIGINPYELF 170 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~---~~v~i~~~~~eal 170 (442)
++++||+|||| |.+|+++++.|+..++ ++ +.| +|.+.++++++|+++||.|+. ++. .+++. +++|+++
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~---v~l--~D~~~~~~~~~g~a~dl~~~~-~~~~~~~~i~~-t~d~~a~ 76 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKEL-AD---VVL--VDIPQLENPTKGKALDMLEAS-PVQGFDANIIG-TSDYADT 76 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC-CE---EEE--ECCGGGHHHHHHHHHHHHHHH-HHHTCCCCEEE-ESCGGGG
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC-Ce---EEE--EeccchHHHHHHhhhhHHHhh-hhccCCCEEEE-cCCHHHh
Confidence 34579999996 9999999999999887 53 555 433322688999999999985 322 23443 4569999
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccch
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~ 249 (442)
+|||+||+++|.||+|||+|.|++.+|++|+++++++|.++| |+++++++|||+|++|++++|.+ ++|+ |+||+||.
T Consensus 77 ~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~~t~~~~k~s-g~p~~rviG~gt~ 154 (315)
T 3tl2_A 77 ADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGV 154 (315)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHH
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHHHHHHHHHhc-CCChHHEEeeccC
Confidence 999999999999999999999999999999999999999996 99999999999999999999998 5765 89999999
Q ss_pred hhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH--
Q 013466 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK-- 327 (442)
Q Consensus 250 LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~-- 327 (442)
||++|++++||+++|+++++|++ +||||||+++||+||+++|+|+|+.+++ +.++++++.++++++|++|++
T Consensus 155 LD~~R~~~~la~~lgv~~~~v~~-~viG~Hg~t~vp~~S~~~v~g~p~~~~~-----~~~~~~~i~~~v~~~g~eii~~~ 228 (315)
T 3tl2_A 155 LDTARFRTFIAQELNLSVKDITG-FVLGGHGDDMVPLVRYSYAGGIPLETLI-----PKERLEAIVERTRKGGGEIVGLL 228 (315)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEC-CEEBCSGGGCEECGGGCEETTEEGGGTS-----CHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCcCHHHcee-eEecCCCCcceeecccCeECCEEHHHhC-----CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999996 8999999999999999999999999875 345677888899999999999
Q ss_pred hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHH
Q 013466 328 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 407 (442)
Q Consensus 328 ~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~ 407 (442)
++|.+.| ++|.++++++.+|+ .|+++|+|+|++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++
T Consensus 229 ~kgst~~-a~a~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~-~~~~~s~P~~~g~~Gv~~v~-~l~L~~~E~~~l~~ 302 (315)
T 3tl2_A 229 GNGSAYY-APAASLVEMTEAIL--KDQRRVLPAIAYLEG-EYGY-SDLYLGVPVILGGNGIEKII-ELELLADEKEALDR 302 (315)
T ss_dssp SSSCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHH
T ss_pred CCCcchH-HHHHHHHHHHHHHH--cCCCcEEEEEEeccC-ccCC-CceEEEEEEEEeCCEEEEEc-CCCCCHHHHHHHHH
Confidence 6666654 57888888888888 478999999999999 7999 79999999999999999999 68999999999999
Q ss_pred HHHHHHHHHH
Q 013466 408 TEQELLAEKK 417 (442)
Q Consensus 408 sa~~l~~~~~ 417 (442)
|+++|++.++
T Consensus 303 s~~~l~~~~~ 312 (315)
T 3tl2_A 303 SVESVRNVMK 312 (315)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998664
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-62 Score=486.12 Aligned_cols=305 Identities=19% Similarity=0.257 Sum_probs=276.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||| |+||+++++.|+..+++++ |.| + |++++++++.++||.|+. ++..+++++.+++++++|||+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~e---l~L--~--Di~~~k~~g~a~dl~~~~-~~~~~~~v~~~~~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVARE---VVL--V--DLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEE--E--CSSHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCChhHHHHHHHHHHHhH-hhcCCeEEEECCHHHhCCCCEE
Confidence 59999996 9999999999999998764 666 3 445688999999999986 4445666666789999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|+++|.|++||++|.|++.+|++++++++++|+++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 72 ii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s-~~p~~rviG~gt~LD~~R~ 149 (310)
T 2xxj_A 72 VLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVATNPVDVMTQVAYALS-GLPPGRVVGSGTILDTARF 149 (310)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHHHHH
T ss_pred EECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHHc-CCCHHHEEecCcchhHHHH
Confidence 999999999999999999999999999999999995 99999999999999999999998 5766 88999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc--CChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~--~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. |+++.++++.++++.+++++++.+|.++
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~ 228 (310)
T 2xxj_A 150 RALLAEYLRVAPQSVHA-YVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATY 228 (310)
T ss_dssp HHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCCC
T ss_pred HHHHHHHhCcCHHHeEE-EEecccCCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCcH
Confidence 99999999999999996 99999999999999999999999999876544 6777788999999999999999999887
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
|+ .|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++|+
T Consensus 229 ~~-~a~a~~~~~~ai~--~~~~~~~~vs~~~~G-~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~~l~ 302 (310)
T 2xxj_A 229 YG-IGAGLARLVRAIL--TDEKGVYTVSAFTPE-VAGV-LEVSLSLPRILGAGGVAGTV-YPSLSPEERAALRRSAEILK 302 (310)
T ss_dssp HH-HHHHHHHHHHHHH--TTCCEEEEEEEEEEE-ETTE-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHH--cCCCCEEEEEEEEcC-ccCC-ccEEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHHHHH
Confidence 64 5777788888877 578999999999999 7999 89999999999999999999 48999999999999999999
Q ss_pred HHHHHH
Q 013466 414 AEKKCV 419 (442)
Q Consensus 414 ~~~~~~ 419 (442)
++++.+
T Consensus 303 ~~~~~~ 308 (310)
T 2xxj_A 303 EAAFAL 308 (310)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-61 Score=484.26 Aligned_cols=310 Identities=19% Similarity=0.285 Sum_probs=276.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~~~~eal~dA 173 (442)
+++||+|||| |+||+++++.|+..+++++ |.| + |++++++++.++||+|+. ++. .+++++.+++++++||
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~e---i~L--~--Di~~~~~~g~~~dl~~~~-~~~~~~~~v~~~~~~a~~~a 75 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDE---LVI--I--DLDTEKVRGDVMDLKHAT-PYSPTTVRVKAGEYSDCHDA 75 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSE---EEE--E--CSCHHHHHHHHHHHHHHG-GGSSSCCEEEECCGGGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEE--E--eCChhHhhhhhhhHHhhh-hhcCCCeEEEeCCHHHhCCC
Confidence 3579999997 9999999999999988653 666 3 445678999999999985 554 4666666889999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.|++||++|.|++.+|++++++++++|+++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 76 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~lD~ 153 (317)
T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVATNPVDILAYATWKFS-GLPKERVIGSGTILDS 153 (317)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHH
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHh-CCCHHHEEecCccccH
Confidence 999999999999999999999999999999999999995 99999999999999999999998 5665 89999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRS 332 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~s 332 (442)
+|++++||+++|+++++|+ ++||||||++++|+||+++++|+|+.+++.+..|+.+.++++.++++.+++++++++|.+
T Consensus 154 ~r~~~~la~~l~v~~~~v~-~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~ 232 (317)
T 3d0o_A 154 ARFRLLLSEAFDVAPRSVD-AQIIGEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGAT 232 (317)
T ss_dssp HHHHHHHHHHHTSCGGGCB-CCEEBCSSTTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCcChhhEE-EEEEecCCCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCCCCc
Confidence 9999999999999999999 599999999999999999999999999886655777778888999999999999999988
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHH
Q 013466 333 SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412 (442)
Q Consensus 333 s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l 412 (442)
+|+ .|.++++.+.+|+ +|++.+++++++++| +||+| |+|||+||++|++|+++++ .++|+++|+++|++|+++|
T Consensus 233 ~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~~-~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~~l 306 (317)
T 3d0o_A 233 YYG-VAMGLARITEAIF--RNEDAVLTVSALLEG-EYEEE-DVYIGVPAVINRNGIRNVV-EIPLNDEEQSKFAHSAKTL 306 (317)
T ss_dssp CHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHH
T ss_pred hHh-HHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCCC-ceEEEEEEEEeCCeeEEEe-cCCCCHHHHHHHHHHHHHH
Confidence 764 6677777788877 578999999999999 79997 9999999999999999999 5899999999999999999
Q ss_pred HHHHHHHHHh
Q 013466 413 LAEKKCVAHL 422 (442)
Q Consensus 413 ~~~~~~~~~~ 422 (442)
+++++.+.+|
T Consensus 307 ~~~~~~~~~~ 316 (317)
T 3d0o_A 307 KDIMAEAEEL 316 (317)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHcc
Confidence 9998877544
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-60 Score=479.24 Aligned_cols=325 Identities=46% Similarity=0.783 Sum_probs=285.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--chhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d--~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
++++||+|+||+|+||+++++.|+..++++.++...+.++|++ ..++++++.++||.|..+++..+++.+++.+++++
T Consensus 3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 3468999999889999999999999998765443445555443 11677899999999975455567777788899999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLD 251 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LD 251 (442)
|||+||+++|.|++||++|.|++.+|++++++++++++++|+|++++|++|||+|++|+++++.++++|+++++++|.||
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~Ld 162 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLD 162 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeecHH
Confidence 99999999999999999999999999999999999999984499999999999999999999998789885567789999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
+.|+++++|+++|+++++|+..+||||||++++|+||+++++|+|+.+++.+..| ..+++++++++++++|++.||.
T Consensus 163 ~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~~~~---~~~~i~~~v~~~g~eii~~kg~ 239 (329)
T 1b8p_A 163 HNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAW---NRDTFLPTVGKRGAAIIDARGV 239 (329)
T ss_dssp HHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHH---HHHTHHHHHHTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhccchh---hHHHHHHHHHHHHHhhhhccCC
Confidence 9999999999999999999976789999999999999999999999988754333 2356677788899999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++++++|.++++.+.+|+.+ +++++++++++++| +||+|+|+|||+||++ ++|+++++++++|+++|+++|++|+++
T Consensus 240 ~~~~~~a~a~~~~~~ai~~~-~~~~~~~~s~~~~g-~yg~~~~~~~s~P~~i-~~Gv~~i~~~~~l~~~e~~~l~~s~~~ 316 (329)
T 1b8p_A 240 SSAASAANAAIDHIHDWVLG-TAGKWTTMGIPSDG-SYGIPEGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINVTLNE 316 (329)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECCS-GGGCCTTCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcC-CCCcEEEEEEEecC-ccCCCCCeEEEEEEEE-cCCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 88887787888888888853 27899999999999 6999999999999999 999999995489999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 013466 412 LLAEKKCVAHLTG 424 (442)
Q Consensus 412 l~~~~~~~~~~~~ 424 (442)
|+++++.+.+++|
T Consensus 317 l~~~~~~~~~~~~ 329 (329)
T 1b8p_A 317 LLEEQNGVQHLLG 329 (329)
T ss_dssp HHHHHHHHGGGGC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998876
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-61 Score=482.29 Aligned_cols=308 Identities=24% Similarity=0.336 Sum_probs=260.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
++++||+|||| |+||+++++.|+..+++++ |.|+ |+++++++|.++||+|+. ++..+++++.+++++++||
T Consensus 5 ~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~e---v~L~----Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~a 75 (318)
T 1y6j_A 5 KSRSKVAIIGA-GFVGASAAFTMALRQTANE---LVLI----DVFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDC 75 (318)
T ss_dssp --CCCEEEECC-SHHHHHHHHHHHHTTCSSE---EEEE----CCC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---EEEE----eCChHHHHHHHHHHHHhH-HhcCCeEEEECCHHHhCCC
Confidence 45689999996 9999999999999998764 6663 334678889999999987 5556777777789999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.|++||++|.|++.+|+++++++++.|.+++ |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 76 DvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~~~~~~k~s-~~p~~rviG~gt~Ld~ 153 (318)
T 1y6j_A 76 DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKWS-GLPVGKVIGSGTVLDS 153 (318)
T ss_dssp SEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHc-CCCHHHEeccCCchHH
Confidence 999999999999999999999999999999999999995 99999999999999999999998 5665 89999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHHHHhcC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLLIKKWG 330 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~eii~~kG 330 (442)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+. .|++++++++.++++.+++++++.+|
T Consensus 154 ~r~~~~la~~lgv~~~~v~~-~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg 232 (318)
T 1y6j_A 154 IRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKG 232 (318)
T ss_dssp HHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEecccCCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCCC
Confidence 99999999999999999996 9999999999999999999999999887543 46666677888888889999999999
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
.++|+ .|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|++
T Consensus 233 ~t~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~G-~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~ 306 (318)
T 1y6j_A 233 ATYYG-IAVSINTIVETLL--KNQNTIRTVGTVING-MYGI-EDVAISLPSIVNSEGVQEVL-QFNLTPEEEEALRFSAE 306 (318)
T ss_dssp CCCHH-HHHHHHHHHHHHH--HTCCCEECCEEEECS-BTTB-CSEEEECCEEEETTEEEECC-CCCCCHHHHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-cceEEEEEEEEcCCeeEEEe-cCCCCHHHHHHHHHHHH
Confidence 88764 5777777777777 468899999999999 7999 89999999999999999999 58999999999999999
Q ss_pred HHHHHHHHH
Q 013466 411 ELLAEKKCV 419 (442)
Q Consensus 411 ~l~~~~~~~ 419 (442)
+|+++++.+
T Consensus 307 ~l~~~~~~~ 315 (318)
T 1y6j_A 307 QVKKVLNEV 315 (318)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=476.36 Aligned_cols=302 Identities=20% Similarity=0.319 Sum_probs=267.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--ccEEEecCcccccCCCcE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAEW 175 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~~v~i~~~~~eal~dADi 175 (442)
||+|||| |+||+++++.|+..++ ++ +.|+ |++++++++.++||.|+..... .+++.+ +++++++|||+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l-~e---l~L~----Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY-DD---LLLI----ARTPGKPQGEALDLAHAAAELGVDIRISGS-NSYEDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC-SC---EEEE----CSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCGGGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC-CE---EEEE----cCChhhHHHHHHHHHHhhhhcCCCeEEEEC-CCHHHhCCCCE
Confidence 7999996 9999999999999887 54 6664 4456889999999999753222 234443 56899999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R 254 (442)
||+++|.|+||||+|.|++.+|++|+++++++|+++| |++|+|++|||+|++|++++|++ ++|+ |+||+||.||++|
T Consensus 71 Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~~-~~p~~rviG~gt~LD~~R 148 (308)
T 2d4a_B 71 VLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKT-GFPRERVIGFSGILDSAR 148 (308)
T ss_dssp EEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHHH
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhc-CCChhhEEEecccchHHH
Confidence 9999999999999999999999999999999999996 99999999999999999999997 5765 8999999999999
Q ss_pred HHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcC-CCc
Q 013466 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWG-RSS 333 (442)
Q Consensus 255 ~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG-~ss 333 (442)
++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++. .+++.+++++++.+++++++.+| .+.
T Consensus 149 ~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~~-----~~~~~~~~~~v~~~g~eii~~kg~s~~ 222 (308)
T 2d4a_B 149 MAYYISQKLGVSFKSVNA-IVLGMHGQKMFPVPRLSSVGGVPLEHLMS-----KEEIEEVVSETVNAGAKITELRGYSSN 222 (308)
T ss_dssp HHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHSC-----HHHHHHHHHHHHTHHHHHHHHHSSCCC
T ss_pred HHHHHHHHhCcChhHeEE-EEEeccCCceeeeehhccCCCEEHHHHcC-----HHHHHHHHHHHHHhhHhhhhCCCCccH
Confidence 999999999999999996 89999999999999999999999988753 44567888888889999999999 554
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
.++|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++|+
T Consensus 223 -~~~a~a~~~~~~ai~--~~~~~v~~vs~~~~G-~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~~l~ 296 (308)
T 2d4a_B 223 -YGPAAGLVLTVEAIK--RDSKRIYPYSLYLQG-EYGY-NDIVAEVPAVIGKSGIERII-ELPLTEDEKRKFDEAVQAVK 296 (308)
T ss_dssp -HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH--hCCCcEEEEEEEEcC-ccCC-CceEEEEEEEEcCCceEEec-CCCCCHHHHHHHHHHHHHHH
Confidence 457777888888887 578999999999999 7999 89999999999999999999 58999999999999999999
Q ss_pred HHHHHHHHhh
Q 013466 414 AEKKCVAHLT 423 (442)
Q Consensus 414 ~~~~~~~~~~ 423 (442)
++++.+..++
T Consensus 297 ~~~~~~~~~l 306 (308)
T 2d4a_B 297 KLVETLPPQL 306 (308)
T ss_dssp HHHHTSCHHH
T ss_pred HHHHHHHHHh
Confidence 9988775554
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=470.51 Aligned_cols=307 Identities=21% Similarity=0.303 Sum_probs=274.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~~~~eal~dA 173 (442)
+++||+|||| |.||+++++.|+..+++++ |.| + |++++++++.++||.|.. ++. .+++++++++++++||
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~e---v~l--~--Di~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~~~al~~a 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADE---IVL--I--DANESKAIGDAMDFNHGK-VFAPKPVDIWHGDYDDCRDA 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEE--E--CSSHHHHHHHHHHHHHHT-TSSSSCCEEEECCGGGTTTC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCE---EEE--E--eCCcchHHHHHhhHHHHh-hhcCCCeEEEcCcHHHhCCC
Confidence 4679999996 9999999999999988653 666 3 445578999999999975 333 3567767889999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||++++.|++||++|.|++.+|+++++++++++++++ |+++++++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 76 DvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~~~~~~~~~s-~~p~~rviG~gt~lD~ 153 (316)
T 1ldn_A 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKFS-GLPHERVIGSGTILDT 153 (316)
T ss_dssp SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHH-TCCGGGEEECTTHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHHHHHHHHHHh-CCCHHHEEecccchHH
Confidence 999999999999999999999999999999999999996 99999999999999999999998 5665 89999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc-CChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~-~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. |.++++.+++++++++++++++++|.
T Consensus 154 ~r~~~~la~~l~v~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~ 232 (316)
T 1ldn_A 154 ARFRFLLGEYFSVAPQNVHA-YIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGA 232 (316)
T ss_dssp HHHHHHHHHHHTSCGGGEEE-EEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHeEE-EEecccCCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhccCC
Confidence 99999999999999999996 99999999999999999999999998876544 55666788888999999999999998
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
++|+ .|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++
T Consensus 233 ~~~~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~yg~-~~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~~ 306 (316)
T 1ldn_A 233 TYYG-IAMGLARVTRAIL--HNENAILTVSAYLDG-LYGE-RDVYIGVPAVINRNGIREVI-EIELNDDEKNRFHHSAAT 306 (316)
T ss_dssp CCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-TTSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHH--hCCCcEEEEEEEecC-ccCC-cceEEEEEEEEeCCeeEEEc-cCCCCHHHHHHHHHHHHH
Confidence 8764 5677777788877 578999999999999 7999 89999999999999999999 489999999999999999
Q ss_pred HHHHHHHH
Q 013466 412 LLAEKKCV 419 (442)
Q Consensus 412 l~~~~~~~ 419 (442)
|+++++.+
T Consensus 307 l~~~~~~~ 314 (316)
T 1ldn_A 307 LKSVLARA 314 (316)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99987754
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=467.53 Aligned_cols=297 Identities=22% Similarity=0.244 Sum_probs=254.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dA 173 (442)
|||+||||+|+||+++++.|+.+ ++.. .|+++|++ + +++|.++||+|.. +..+++.. +++|++++||
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~-----el~L~Di~--~-~~~G~a~Dl~~~~--~~~~v~~~~~~~~~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGS-----ELSLYDIA--P-VTPGVAVDLSHIP--TAVKIKGFSGEDATPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTE-----EEEEECSS--T-THHHHHHHHHTSC--SSEEEEEECSSCCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCc-----eEEEEecC--C-CchhHHHHhhCCC--CCceEEEecCCCcHHHhCCC
Confidence 69999998899999999999987 6543 34555444 3 5789999999974 22334432 4789999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHH---HHHHCCCCCc-ceeeccch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI---CLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~---~~k~s~~~p~-kvig~gT~ 249 (442)
|+||+++|.||||||+|.||+.+|++|+++++++|+++| |+++++++|||+|++|++ ++|+++.+|+ |+||+| .
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~-~ 148 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-T 148 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECC-H
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEe-c
Confidence 999999999999999999999999999999999999996 999999999999999999 7899976466 889998 9
Q ss_pred hhHHHHHHHHHHHhCCCcCcccceEEEeec-CCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 250 LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H-G~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
||++|++++||+++|+++++|+ ++||||| |+++||+||++ +|.|+ ..+++++++++++++|++|++.
T Consensus 149 LD~~R~~~~la~~lgv~~~~v~-~~V~G~Hsg~t~vp~~S~~--~g~~~---------~~~~~~~i~~~v~~~g~eIi~~ 216 (312)
T 3hhp_A 149 LDIIRSNTFVAELKGKQPGEVE-VPVIGGHSGVTILPLLSQV--PGVSF---------TEQEVADLTKRIQNAGTEVVEA 216 (312)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCC-CCEEECSSGGGEEECGGGC--TTCCC---------CHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCcChhHcc-eeEEeccCCCceeeecccC--CCCCC---------CHHHHHHHHHHHHhhhHHHHhh
Confidence 9999999999999999999999 5999999 79999999998 67653 3456788888999999999997
Q ss_pred c---CCCchHHHHHHHHHHHHHh---hcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHH
Q 013466 329 W---GRSSAASTAVSIVDAMKSL---VTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 402 (442)
Q Consensus 329 k---G~ss~~s~A~~i~~aI~~~---l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~ 402 (442)
| |.+ ++++|.++++++.+| + .|++.++|++ +++| + |. .++|||+||++|++|++++++.++|+++|+
T Consensus 217 k~g~gst-~~s~a~a~~~~~~ai~~~l--~~~~~v~~~s-~~~g-~-g~-~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~ 289 (312)
T 3hhp_A 217 KAGGGSA-TLSMGQAAARFGLSLVRAL--QGEQGVVECA-YVEG-D-GQ-YARFFSQPLLLGKNGVEERKSIGTLSAFEQ 289 (312)
T ss_dssp TTTSCCC-CHHHHHHHHHHHHHHHHHH--TTCSSCEEEE-EEEC-C-CS-SCSEEEEEEEEETTEEEEECCCCCCCHHHH
T ss_pred ccCCCCc-hhHHHHHHHHHHHHHHHHc--CCCCceEEEE-EecC-C-CC-cceEEEeEEEEeCCEEEEEcCCCCCCHHHH
Confidence 7 444 455677777666666 5 4678899998 9887 3 43 678999999999999999996449999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 013466 403 KRIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~~~ 424 (442)
++|++|+++|+++++.+..|.+
T Consensus 290 ~~l~~s~~~l~~~i~~g~~~~~ 311 (312)
T 3hhp_A 290 NALEGMLDTLKKDIALGEEFVN 311 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988864
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=459.83 Aligned_cols=301 Identities=18% Similarity=0.274 Sum_probs=268.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|+||+|+||+++++.|+..+++.+ +.| +|+..+++++++.++||.|... +..+++++.+++++++|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~e---l~L--~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~~~a~~~aDvV 74 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADE---VVF--VDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYEDTAGSDVV 74 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSE---EEE--ECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE---EEE--EcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCCHHHhCCCCEE
Confidence 5999999889999999999999887542 555 4442256778899999999874 545666666789999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|+++|.|++||++|.|++.+|+++++++++++++++ |+++++++|||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~~~~~-~~p~~rviG~gt~Ld~~r~ 152 (303)
T 1o6z_A 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEAG-DRSREQVIGFGGRLDSARF 152 (303)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHHS-SSCGGGEEECCHHHHHHHH
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHHc-CCCHHHeeecccchhHHHH
Confidence 999999999999999999999999999999999985 99999999999999999999999 5665 89999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCchH
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSSAA 335 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss~~ 335 (442)
+++||+++|+++++|+ ++||||||++++|+||+++++|.| +++ ..+++.+++++++++++++++.+|.++|
T Consensus 153 ~~~la~~l~v~~~~v~-~~v~G~HG~~~~p~~s~~~v~g~p--~~~-----~~~~~~~~~~~v~~~g~eii~~kg~~~~- 223 (303)
T 1o6z_A 153 RYVLSEEFDAPVQNVE-GTILGEHGDAQVPVFSKVSVDGTD--PEF-----SGDEKEQLLGDLQESAMDVIERKGATEW- 223 (303)
T ss_dssp HHHHHHHHTCCGGGEE-CCEEECSSTTEEECGGGCEETTBC--CCC-----CHHHHHHHHHHHHHHHHHHHTTTSSCCH-
T ss_pred HHHHHHHhCcCHHHeE-EEEEeCCCCccccCCcccccCCcC--ccC-----CHHHHHHHHHHHHHHhHHHHhcCCChHH-
Confidence 9999999999999999 599999999999999999999998 654 3455678888888899999999998876
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHH
Q 013466 336 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE 415 (442)
Q Consensus 336 s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~ 415 (442)
++|.++++.+.+|+ +|++++++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++|+++
T Consensus 224 ~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~~l~~~ 298 (303)
T 1o6z_A 224 GPARGVAHMVEAIL--HDTGEVLPASVKLEG-EFGH-EDTAFGVPVSLGSNGVEEIV-EWDLDDYEQDLMADAAEKLSDQ 298 (303)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCCEEEEEEecCC-ccCC-cceEEEEEEEEeCCeeEEec-CCCCCHHHHHHHHHHHHHHHHH
Confidence 57888888888888 478899999999999 7999 89999999999999999999 5899999999999999999998
Q ss_pred HHHH
Q 013466 416 KKCV 419 (442)
Q Consensus 416 ~~~~ 419 (442)
++.+
T Consensus 299 ~~~~ 302 (303)
T 1o6z_A 299 YDKI 302 (303)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7754
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=477.60 Aligned_cols=289 Identities=17% Similarity=0.192 Sum_probs=250.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-CCCcccEEEecCcccccC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFE 171 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-~~~~~~v~i~~~~~eal~ 171 (442)
.+..+||+|||| |.||+++++.|+..+++++ +.|+ |+++++++|.++||+|+. +....++.. +++|++++
T Consensus 18 ~~~~~kV~ViGa-G~vG~~~a~~la~~g~~~e---v~L~----Di~~~~~~g~a~DL~~~~~~~~~~~i~~-t~d~~~~~ 88 (330)
T 3ldh_A 18 PRSYNKITVVGC-DAVGMADAISVLMKDLADE---VALV----DVMEDKLKGEMMDLEHGSLFLHTAKIVS-GKDYSVSA 88 (330)
T ss_dssp CCCCCEEEEEST-THHHHHHHHHHHHHCCCSE---EEEE----CSCHHHHHHHHHHHHHHGGGSCCSEEEE-ESSSCSCS
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCe---EEEE----ECCHHHHHHHHHHhhhhhhcccCCeEEE-cCCHHHhC
Confidence 345689999996 9999999999999998864 6663 456788999999999984 222234443 56788999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~L 250 (442)
|||+||+++|.||+|||+|.|++.+|++|+++++++|.+++ |+++++++|||+|++|++++|.+ ++|+ |+||+||.|
T Consensus 89 daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtNPvdi~t~~~~k~s-g~p~~rViG~gt~L 166 (330)
T 3ldh_A 89 GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPELGTDKNKQDWKLS-GLPMHRIIGSGCNL 166 (330)
T ss_dssp SCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEECCTTHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCCccHHHHHHHHHHh-CCCHHHeecccCch
Confidence 99999999999999999999999999999999999999995 99999999999999999999999 5776 889999999
Q ss_pred hHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcC
Q 013466 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWG 330 (442)
Q Consensus 251 Ds~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG 330 (442)
|++|+++++|+++|++|++|++ +||||||+++||+||+ + | .+ ++.++++++|++|++.||
T Consensus 167 Ds~R~~~~lA~~lgv~~~~V~~-~V~G~Hg~t~vp~~S~---------~------~-~~---~~~~~v~~~g~eii~~kg 226 (330)
T 3ldh_A 167 DSARFRYLMGERLGVHSCLVIG-WVIGQHGDSVPSVWSG---------M------W-DA---KLHKDVVDSAYEVIKLKG 226 (330)
T ss_dssp HHHHHHHHHHHHHTSCTTTCCE-EECSSSSTTCCEEEEE---------E------E-ET---TEEHHHHHCCCTTSTTCH
T ss_pred hHHHHHHHHHHHhCCCHHHeEE-EEEcCCCCceeeechh---------h------H-HH---HHHHHHHHHHHHHHHccC
Confidence 9999999999999999999996 9999999999999998 1 1 11 233456669999999999
Q ss_pred CCchHHHHH-----------------HHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCcee--e
Q 013466 331 RSSAASTAV-----------------SIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYE--L 391 (442)
Q Consensus 331 ~ss~~s~A~-----------------~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~--i 391 (442)
.++|+ +|. ++++++.+++ .|++.|+|+|++++| +||+++|+|||+||++| +|+++ +
T Consensus 227 ~t~~a-~a~~~~~~~~~~~~~~~~~~a~~~~~~ail--~~~~~v~~~s~~~~g-~yg~~~~v~~s~P~~lg-~Gv~~~~i 301 (330)
T 3ldh_A 227 YTSWA-IGLVVSNPVDVLTYVAWKGCSVADLAQTIM--KDLCRVHPVSTMVKD-FYGIKDNVFLSLPCVLN-NGISHCNI 301 (330)
T ss_dssp HHHHH-HHHTTHHHHTTSSSCSCTHHHHHHHHHHHH--HTCCEEECCBCCCSS-SSSCCSCCCCBCCEEEB-TTBCTTCC
T ss_pred Cccee-eeeeccCccchhhhhhhHHHHHHHHHHHHH--cCCCceEEEEeecCC-ccCCCCceEEEEEEEEC-CcEEEcce
Confidence 87763 555 6666666666 478999999999999 79998899999999999 99999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013466 392 VKDVIFDDYLRKRIAKTEQELLAEKKC 418 (442)
Q Consensus 392 ~~~~~L~~~E~~~L~~sa~~l~~~~~~ 418 (442)
+ +++|+++|+++|++|+++|++.++.
T Consensus 302 v-~~~L~~~E~~~l~~s~~~l~~~~~~ 327 (330)
T 3ldh_A 302 V-KMKLKPDEEQQLQKSATTLWDIQKD 327 (330)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred e-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9 4999999999999999999987654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-58 Score=457.54 Aligned_cols=300 Identities=22% Similarity=0.344 Sum_probs=256.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~dAD 174 (442)
+||+|||| |.||+++++.|+..+++ .+.| + |++++++++.++||.|+.... ..+++.+ +++++++|||
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~----~v~L--~--Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELG----DIVL--L--DIVEGVPQGKALDLYEASPIEGFDVRVTGT-NNYADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCS----EEEE--E--CSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SCGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC----eEEE--E--eCCccHHHHHHHhHHHhHhhcCCCeEEEEC-CCHHHHCCCC
Confidence 69999996 99999999999998864 1555 4 345678899999999875221 2234444 4579999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.|++||++|.|++.+|++++++++++|++++ |++++|++|||+|++|+++++.+ ++|+ |+||+||.||++
T Consensus 73 ~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~t~~~~~~~-~~~~~rviG~gt~LD~~ 150 (309)
T 1ur5_A 73 VIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAA 150 (309)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEECCHHHHHH
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHHHHHHHHHc-CCCHHHEEECCcchHHH
Confidence 99999999999999999999999999999999999996 99999999999999999999997 5665 899999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH--hcCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK--KWGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~--~kG~ 331 (442)
|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++ ..+++.+++++++.+++++++ ++|.
T Consensus 151 r~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-----~~~~~~~~~~~v~~~g~eii~~~~kgs 224 (309)
T 1ur5_A 151 RYRTFIAMEAGVSVEDVQA-MLMGGHGDEMVPLPRFSCISGIPVSEFI-----APDRLAQIVERTRKGGGEIVNLLKTGS 224 (309)
T ss_dssp HHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTS-----CHHHHHHHHHHHHTHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCCChhheeE-EEecCcCCceeeeeecceeCCEeHHHHc-----CHhHHHHHHHHHHhhhHHhhhhccCCC
Confidence 9999999999999999995 9999999999999999999999998875 345577888888889999999 7885
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+. .++|.++++.+.+|+ +|++++++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++
T Consensus 225 ~~-~~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~~ 298 (309)
T 1ur5_A 225 AY-YAPAAATAQMVEAVL--KDKKRVMPVAAYLTG-QYGL-NDIYFGVPVILGAGGVEKIL-ELPLNEEEMALLNASAKA 298 (309)
T ss_dssp CC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHHHHH--cCCCcEEEEEEEecC-ccCC-cceEEEEEEEEeCCceEEec-CCCCCHHHHHHHHHHHHH
Confidence 54 457777778888777 578999999999999 7999 89999999999999999999 589999999999999999
Q ss_pred HHHHHHHHH
Q 013466 412 LLAEKKCVA 420 (442)
Q Consensus 412 l~~~~~~~~ 420 (442)
|+++++.+.
T Consensus 299 l~~~~~~~~ 307 (309)
T 1ur5_A 299 VRATLDTLK 307 (309)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999888663
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=454.55 Aligned_cols=309 Identities=18% Similarity=0.254 Sum_probs=269.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~ 171 (442)
++++||+|||| |.+|+++++.|+..++++ |.| + |++++++++.++|+++..... ..+++.+ +++++++
T Consensus 2 ~~~~kI~VIGa-G~vG~~ia~~la~~g~~~----v~L--~--Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~~al~ 71 (322)
T 1t2d_A 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGD----VVL--F--DIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTYDDLA 71 (322)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCE----EEE--E--CSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCe----EEE--E--eCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCHHHhC
Confidence 34679999996 999999999999998752 555 3 445688999999999874211 2345554 4569999
Q ss_pred CCcEEEEeCCcCCCCCCc-----HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceee
Q 013466 172 DAEWALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~-----r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig 245 (442)
|||+||+++|.|++||++ |.|++.+|++++++++++|.++| |++++|++|||++++|+++++.+ ++|+ |+||
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~t~~~~~~~-g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHS-GVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHHHHHHHHhc-CCChHHEEe
Confidence 999999999999999999 99999999999999999999996 99999999999999999999987 5665 9999
Q ss_pred ccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
+||.||++|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+..+..++++++.++++.+++++
T Consensus 150 ~gt~ld~~R~~~~la~~lgv~~~~v~~-~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ei 228 (322)
T 1t2d_A 150 LGGVLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEI 228 (322)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHH
T ss_pred ccCcccHHHHHHHHHHHhCCCHHHeEE-EEEcCCCCcEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 8999999999999999999999999987554234556788888899999999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 326 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 326 i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
++.+|.+. .++|.++++.+.+|+ +|++.++++|++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|
T Consensus 229 i~~kgs~~-~~~a~a~~~~~~ai~--~~~~~v~~~s~~~~g-~~g~-~~~~~~vP~~ig~~Gv~~i~-~~~l~~~e~~~l 302 (322)
T 1t2d_A 229 VNLHASPY-VAPAAAIIEMAESYL--KDLKKVLICSTLLEG-QYGH-SDIFGGTPVVLGANGVEQVI-ELQLNSEEKAKF 302 (322)
T ss_dssp HHHTSSCC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred HhccCchH-HHHHHHHHHHHHHHH--hCCCCEEEEEEEecC-ccCC-CceEEEEEEEEeCCeeEEeC-CCCCCHHHHHHH
Confidence 99999655 457777888888887 578999999999999 7999 89999999999999999999 589999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013466 406 AKTEQELLAEKKCVAH 421 (442)
Q Consensus 406 ~~sa~~l~~~~~~~~~ 421 (442)
++|+++|+++++..-|
T Consensus 303 ~~s~~~L~~~~~~~~~ 318 (322)
T 1t2d_A 303 DEAIAETKRMKALAHH 318 (322)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998887644
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=453.21 Aligned_cols=305 Identities=24% Similarity=0.412 Sum_probs=260.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEecC---cccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGIN---PYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~~---~~eal~d 172 (442)
|||+|+||+|+||+++++.|+..+++.+ +.| +|+..++++++++++||.|+. ++. .++.++.+ .+++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~e---l~L--~Di~~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~l~~al~g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKD---LVL--IGREHSINKLEGLREDIYDAL-AGTRSDANIYVESDENLRIIDE 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCE---EEE--EECGGGHHHHHHHHHHHHHHH-TTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCE---EEE--EcCCCchhhhHHHHHHHHHhH-HhcCCCeEEEeCCcchHHHhCC
Confidence 5999999889999999999999887543 555 433226677899999999976 443 34455432 4999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
||+||+++|.|++||++|.+++.+|++++++++++++++ + +++++++|||+|++|+++++.+ ++|+ |+||+||.||
T Consensus 75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv~~~t~~~~k~~-~~p~~rviG~gt~LD 151 (313)
T 1hye_A 75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPVDVMTYKALVDS-KFERNQVFGLGTHLD 151 (313)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSHHHHHHHHHHHH-CCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcHHHHHHHHHHhh-CcChhcEEEeCccHH
Confidence 999999999999999999999999999999999999998 5 9999999999999999999997 5665 8999999999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCC
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGR 331 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ 331 (442)
++|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++. +..+++.+++++++++++++++++|.
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~---~~~~~~~~~~~~v~~~g~eii~~kgs 227 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFER---FKELPIDEIIEDVKTKGEQIIRLKGG 227 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGG---GGGCCHHHHHHHHHHHTTSCCC----
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEeeccCCcccceeeccccCCEEHHHHhc---CCHHHHHHHHHHHHhccceeecCCCC
Confidence 999999999999999999996 99999999999999999999999998751 23344677788888899999998886
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
+. .++|.++++++.+|+ +|++.+++++++++| +| |+ +|+|||+||++|++|+++++ .++|+++|+++|++|++
T Consensus 228 ~~-~~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~~g~-~~~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~ 301 (313)
T 1hye_A 228 SE-FGPAAAILNVVRCIV--NNEKRLLTLSAYVDG-EFDGI-RDVCIGVPVKIGRDGIEEVV-SIELDKDEIIAFRKSAE 301 (313)
T ss_dssp ---CCHHHHHHHHHHHHH--TTCCEEEEEEEEEES-SSSSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHHHHH--cCCCeEEEEEEeecc-eecCc-cceEEEEEEEEeCCeeEEec-CCCCCHHHHHHHHHHHH
Confidence 54 346666777777777 578999999999999 69 99 89999999999999999999 58999999999999999
Q ss_pred HHHHHHHHHH
Q 013466 411 ELLAEKKCVA 420 (442)
Q Consensus 411 ~l~~~~~~~~ 420 (442)
+|+++++.+.
T Consensus 302 ~l~~~~~~~~ 311 (313)
T 1hye_A 302 IIKKYCEEVK 311 (313)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999888764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=442.76 Aligned_cols=300 Identities=18% Similarity=0.258 Sum_probs=242.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||| |.+|+++++.|+..+++++ +.|+ |++++++++.++|+.|.. ++....+++.+++++++|||+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~e---V~L~----D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSE---LVLV----DRDEDRAQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEEE----CSSHHHHHHHHHHHTTSC-CTTSCCEEEEECGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCE---EEEE----eCCHHHHHHHHHhhhhhh-hhcCCeEEEECCHHHhCCCCEE
Confidence 59999996 9999999999999987653 6663 445678899999999876 4444455544678999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~ 256 (442)
|++++.|++||++|.|++.+|++++++++++|.+++ |+++++++|||++++++++++.+ .|.|+||+||.||+.|++
T Consensus 72 Ii~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~--~~~rviG~gt~Ld~~r~~ 148 (304)
T 2v6b_A 72 ILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLDSARFR 148 (304)
T ss_dssp EECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS--CSSCEEECTTHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC--ChhcEEeCCcCchHHHHH
Confidence 999999999999999999999999999999999995 99999999999999999999987 455999999999999999
Q ss_pred HHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc--CChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 257 ~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~--~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
+++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+.. |+.++++++++++++++++|++.+|.++|
T Consensus 149 ~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t~~ 227 (304)
T 2v6b_A 149 HLMAQHAGVDGTHAHG-YVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYY 227 (304)
T ss_dssp HHHHHHHTSCGGGEEC-CEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHhCcCHHHceE-EEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 9999999999999997 99999999999999999999999999876544 77777889999999999999999998876
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+ .|.++++.+.+|+ +|++++++++++++| || +|||+||++|++|+++++ .++|+++|+++|++|+++|++
T Consensus 228 ~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g--yg----~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~~l~~ 297 (304)
T 2v6b_A 228 G-IGAALARITEAVL--RDRRAVLTVSAPTPE--YG----VSLSLPRVVGRQGVLSTL-HPKLTGDEQQKLEQSAGVLRG 297 (304)
T ss_dssp H-HHHHHHHHHHHHH--TTCCEEEEEEEEETT--TT----EEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHHHH--hCCCcEEEEEEEECC--cC----cEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHHHHHH
Confidence 4 5778888888888 578999999999998 86 899999999999999999 489999999999999999999
Q ss_pred HHHHH
Q 013466 415 EKKCV 419 (442)
Q Consensus 415 ~~~~~ 419 (442)
+++.+
T Consensus 298 ~~~~~ 302 (304)
T 2v6b_A 298 FKQQL 302 (304)
T ss_dssp -----
T ss_pred HHHHh
Confidence 87754
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-56 Score=445.35 Aligned_cols=306 Identities=21% Similarity=0.323 Sum_probs=267.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~dA 173 (442)
++||+|||| |.+|+++++.|+..++++ +.|+ |++++++++.++|++|..... ..+++.++ ++++++||
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~----V~L~----Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~-d~~al~~a 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGD----VYMF----DIIEGVPQGKALDLNHCMALIGSPAKIFGEN-NYEYLQNS 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCE----EEEE----CSSTTHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGGTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCe----EEEE----ECCHHHHHHHHHHHHhHhhccCCCCEEEECC-CHHHHCCC
Confidence 369999996 999999999999988742 5553 445688999999998875211 23455554 46999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs 252 (442)
|+||+++|.|++||++|.|++.+|++++++++++|.++| |++++|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~-~~~~~rviG~~t~Ld~ 161 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAMVYYFKEKS-GIPANKVCGMSGVLDS 161 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHHHHH
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHHHHHHHHhc-CCChhhEEEeCcHHHH
Confidence 999999999999999999999999999999999999996 99999999999999999999887 4665 99999999999
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH--hcC
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK--KWG 330 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~--~kG 330 (442)
+|++++||+++|+++++|+. +||||||++++|+||+++++|+|+.+++.+..+..+++.++.++++.+|+++++ ++|
T Consensus 162 ~R~~~~la~~lgv~~~~v~~-~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~~g 240 (328)
T 2hjr_A 162 ARFRCNLSRALGVKPSDVSA-IVVGGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTG 240 (328)
T ss_dssp HHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhCCCHHHeeE-EEecCCCCceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhhCCC
Confidence 99999999999999999995 899999999999999999999999998866223456677888888889999999 577
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
.+.| ++|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|++
T Consensus 241 s~~~-~~a~a~~~i~~ai~--~~~~~v~~~~v~~~G-~~g~-~~~~~~vP~~ig~~Gv~~i~-~~~L~~~e~~~l~~s~~ 314 (328)
T 2hjr_A 241 SAFY-APAASAVAMAQAYL--KDSKSVLVCSTYLTG-QYNV-NNLFVGVPVVIGKNGIEDVV-IVNLSDDEKSLFSKSVE 314 (328)
T ss_dssp CCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-CceEEEEEEEEeCCeeEEec-CCCCCHHHHHHHHHHHH
Confidence 6554 56777777777777 578899999999999 7999 89999999999999999998 58999999999999999
Q ss_pred HHHHHHHHHH
Q 013466 411 ELLAEKKCVA 420 (442)
Q Consensus 411 ~l~~~~~~~~ 420 (442)
+|+++++.+.
T Consensus 315 ~l~~~~~~~~ 324 (328)
T 2hjr_A 315 SIQNLVQDLK 324 (328)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988775
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=444.77 Aligned_cols=312 Identities=23% Similarity=0.347 Sum_probs=269.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC--CcccEEEecCccccc
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELF 170 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~--~~~~v~i~~~~~eal 170 (442)
..+++||+|||| |.+|++++..|+..++++ +.|+ |++++++++.++|++|.... ...+++.+++..+++
T Consensus 6 ~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~----V~L~----D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~ 76 (331)
T 1pzg_A 6 VQRRKKVAMIGS-GMIGGTMGYLCALRELAD----VVLY----DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL 76 (331)
T ss_dssp CSCCCEEEEECC-SHHHHHHHHHHHHHTCCE----EEEE----CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCe----EEEE----ECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHh
Confidence 344579999996 999999999999988642 5553 44567899989999887421 223566655544599
Q ss_pred CCCcEEEEeCCcCCCCCC-----cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-cee
Q 013466 171 EDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNF 244 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~-----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvi 244 (442)
+|||+||+++|.|++||+ +|.|++.+|++++++++++|.++| |++++|++|||+|++|+++++.+ ++|+ |+|
T Consensus 77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~t~~~~~~~-~~~~~rvi 154 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEAS-GVPTNMIC 154 (331)
T ss_dssp TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHH-CCCGGGEE
T ss_pred CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHHHHHHHHhc-CCChhcEE
Confidence 999999999999999999 999999999999999999999996 99999999999999999999987 5665 999
Q ss_pred eccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHH
Q 013466 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGL 324 (442)
Q Consensus 245 g~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~e 324 (442)
|+||.||++|++++||+++|+++++|+. +|||+||+++||+||+++++|+|+.+++++..+..++++++.++++.+|++
T Consensus 155 G~gt~LD~~R~~~~la~~lgv~~~~v~~-~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~e 233 (331)
T 1pzg_A 155 GMACMLDSGRFRRYVADALSVSPRDVQA-TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGE 233 (331)
T ss_dssp ECCHHHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHhCCCHHHceE-EEecCCCCCEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHH
Confidence 9999999999999999999999999995 999999999999999999999999998765323455677777788889999
Q ss_pred HHH--hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHH
Q 013466 325 LIK--KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 402 (442)
Q Consensus 325 ii~--~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~ 402 (442)
+++ ++|.+. .++|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+
T Consensus 234 ii~~~~kgst~-~~~a~a~~~ii~ai~--~~~~~~~~~~v~~~G-~~g~-~~~~~~vP~~vg~~Gv~~i~-~~~L~~~e~ 307 (331)
T 1pzg_A 234 IVRFLGQGSAY-YAPAASAVAMATSFL--NDEKRVIPCSVYCNG-EYGL-KDMFIGLPAVIGGAGIERVI-ELELNEEEK 307 (331)
T ss_dssp HHHHHSSSCCC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHH
T ss_pred HHHhhcCCCcc-chHHHHHHHHHHHHH--hCCCcEEEEEEEecC-ccCC-CceEEEEEEEEeCCeeEEec-CCCCCHHHH
Confidence 999 688554 446777777777777 578899999999999 7999 89999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013466 403 KRIAKTEQELLAEKKCVAHL 422 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~ 422 (442)
++|++|+++|+++++.+..+
T Consensus 308 ~~l~~s~~~l~~~~~~~~~~ 327 (331)
T 1pzg_A 308 KQFQKSVDDVMALNKAVAAL 327 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999887543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=432.83 Aligned_cols=303 Identities=21% Similarity=0.336 Sum_probs=262.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~eal~dAD 174 (442)
|||+|||| |.+|++++..|+..++.. ++.|+ |++++++++.++|+.|..... ..+++.+ ++++++++||
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~---~V~l~----D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~~~l~~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLAR---ELVLL----DVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDYADTANSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS---EEEEE----CSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCGGGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---EEEEE----eCChhHHHHHHHhHHhhhhcccCCcEEEEC-CCHHHHCCCC
Confidence 59999996 999999999999876532 36663 445678889999998763111 1234444 4567799999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||++++.|++||++|.|++.+|+++++++++.|++++ |+++++++|||+|++++++++.+ ++|+ |+||+||.||++
T Consensus 72 vViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~~~~~~~~~~~-~~~~~rviG~gt~ld~~ 149 (310)
T 1guz_A 72 IVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAA 149 (310)
T ss_dssp EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEECHHHHHH
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchHHHHHHHHHhc-CCChHHEEECCCchHHH
Confidence 99999999999999999999999999999999999995 99999999999999999999987 5666 899999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH--hcCC
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK--KWGR 331 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~--~kG~ 331 (442)
|+++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+++. .+++.+++++++++++++++ ++|.
T Consensus 150 r~~~~la~~l~v~~~~v~~-~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~-----~~~~~~~~~~v~~~g~~ii~~~~kgs 223 (310)
T 1guz_A 150 RFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLP-----AETIDKLVERTRNGGAEIVEHLKQGS 223 (310)
T ss_dssp HHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSC-----HHHHHHHHHHHHTHHHHHHHHHSSSC
T ss_pred HHHHHHHHHhCCCHHHeEE-EEEcccCCcEeeeeecccCCCEEHHHHCC-----HHHHHHHHHHHHHhHHHHHhhcCCCC
Confidence 9999999999999999996 99999999999999999999999998753 44567888888889999999 7885
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQE 411 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~ 411 (442)
+. .++|.++++.+.+|+ +|++++++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++
T Consensus 224 ~~-~~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~~P~~ig~~Gv~~i~-~~~l~~~e~~~l~~s~~~ 297 (310)
T 1guz_A 224 AF-YAPASSVVEMVESIV--LDRKRVLPCAVGLEG-QYGI-DKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQKSAKI 297 (310)
T ss_dssp CC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHHHHHH--cCCCcEEEEEEeecC-ccCC-cceEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHHHHH
Confidence 54 457778888888888 578999999999999 7999 89999999999999999999 589999999999999999
Q ss_pred HHHHHHHHHHh
Q 013466 412 LLAEKKCVAHL 422 (442)
Q Consensus 412 l~~~~~~~~~~ 422 (442)
|+++++.+...
T Consensus 298 l~~~~~~~~~~ 308 (310)
T 1guz_A 298 VDENCKMLEST 308 (310)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHhhh
Confidence 99988876543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=426.56 Aligned_cols=306 Identities=21% Similarity=0.322 Sum_probs=269.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||| |.+|++++..|+..+..+ +|.|+ |++++++++.++|+.|.. ++....++...+++++++||+|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~---~V~l~----D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~d~~~~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAR---EMVLI----DVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCS---EEEEE----CSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC---eEEEE----eCChHHHHHHHHHHHhhh-hhcCCcEEEeCCHHHhCCCCEE
Confidence 58999996 999999999999988743 36663 556678888888888765 2322233332368999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHHHH
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~R~ 255 (442)
|++.+.+++||++|.|++.+|+++++++++.|.+++ |+++++++|||++++++++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rviG~~t~ld~~r~ 149 (319)
T 1a5z_A 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKES-GMDPRKVFGSGTVLDTARL 149 (319)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-TCCTTTEEECTTHHHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHHHHHHHHHh-CCChhhEEeeCccHHHHHH
Confidence 999999999999999999999999999999999995 99999999999999999998888 4554 99999999999999
Q ss_pred HHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc-CChHHHHHHHHHHhhhhHHHHHhcCCCch
Q 013466 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WLEEGFTETIQKVRLRGGLLIKKWGRSSA 334 (442)
Q Consensus 256 ~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~-~~~~e~~~~~~~v~~~g~eii~~kG~ss~ 334 (442)
++++|+++|+++++|+. +||||||++++|+||+++++|+|+.+|+.+.. |..+.+.++.++++++++++++.+|.++|
T Consensus 150 ~~~la~~lgv~~~~v~~-~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~~~~ 228 (319)
T 1a5z_A 150 RTLIAQHCGFSPRSVHV-YVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHY 228 (319)
T ss_dssp HHHHHHHHTCCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHhCcCHHHceE-EEEeCCCCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccCCchHH
Confidence 99999999999999996 99999999999999999999999999876544 66677788888899999999999998876
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHH
Q 013466 335 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLA 414 (442)
Q Consensus 335 ~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~ 414 (442)
+ +|.++++.+.+|+ +|++.+++++++++| .||+ +|+|||+||++|++|+++++ .++|+++|+++|++|+++|++
T Consensus 229 ~-~a~a~~~~~~ai~--~~~~~~~~~~~~~~g-~~g~-~~~~~~vP~~vg~~Gv~~i~-~~~L~~~e~~~l~~s~~~l~~ 302 (319)
T 1a5z_A 229 A-IALAVADIVESIF--FDEKRVLTLSVYLED-YLGV-KDLCISVPVTLGKHGVERIL-ELNLNEEELEAFRKSASILKN 302 (319)
T ss_dssp H-HHHHHHHHHHHHH--TTCCEEEEEEEEESS-BTTB-CSEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH--hCCCCEEEEEEEecC-ccCc-cceEEEEEEEEeCCceEEEe-cCCCCHHHHHHHHHHHHHHHH
Confidence 4 5777888888887 578999999999999 7999 89999999999999999999 589999999999999999999
Q ss_pred HHHHHH
Q 013466 415 EKKCVA 420 (442)
Q Consensus 415 ~~~~~~ 420 (442)
+++.+.
T Consensus 303 ~~~~~~ 308 (319)
T 1a5z_A 303 AINEIT 308 (319)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998875
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=428.29 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=240.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|||| |+||+++++.|+..+++++ +.|+ |+ +++ +.+.++|+.|...+ +++.+ +++++++|||
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~e---v~L~--Di--~~~-~~g~a~dl~~~~~~---~i~~t-~d~~~l~~aD 79 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADR---LVLL--DL--SEG-TKGATMDLEIFNLP---NVEIS-KDLSASAHSK 79 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEEE--CC--C------CHHHHHHHTCT---TEEEE-SCGGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE--cC--Ccc-hHHHHHHHhhhcCC---CeEEe-CCHHHHCCCC
Confidence 4679999996 9999999999999998653 6664 33 445 78899999986432 66775 4579999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhhHH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LDs~ 253 (442)
+||+++|.+ +|||+|.|++.+|++|+++++++|+++| |++|+|++|||+|++|+++++.+ ++|+ |+||+||.||++
T Consensus 80 ~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~-~~p~~rviG~gt~Ld~~ 156 (303)
T 2i6t_A 80 VVIFTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLS-TFPANRVIGIGCNLDSQ 156 (303)
T ss_dssp EEEECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHHHHH
T ss_pred EEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhc-CCCHHHeeCCCCCchHH
Confidence 999999996 8999999999999999999999999997 99999999999999999999997 5665 999999999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
|++++||+++|+++++|+. +||||||++++|+||+.. + |..++ ++++++++++++++.+|.+
T Consensus 157 R~~~~la~~lgv~~~~v~~-~v~G~Hg~s~~p~~s~~~-------~------~~~~~---~~~~~~~~g~eii~~kGst- 218 (303)
T 2i6t_A 157 RLQYIITNVLKAQTSGKEV-WVIGEQGEDKVLTWSGQE-------E------VVSHT---SQVQLSNRAMELLRVKGQR- 218 (303)
T ss_dssp HHHHHHHHTSCCTTGGGGE-EEEBSCSSSCEEEEBCSS-------C------CCCHH---HHHHHHHHHHTTSSSCCCC-
T ss_pred HHHHHHHHHcCCChHHeEE-EEecCCCCCccccccccc-------c------ccHHH---HHHHHHHHHHHHHHccCch-
Confidence 9999999999999999995 999999999999999952 1 22233 4445666999999988855
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
+.++|.++++.+.+|+ +|++.+++++++++| +||+|+|+|||+||++|++|++++++...|+++|+++|++|+++|+
T Consensus 219 ~~~~a~a~~~i~~ai~--~~~~~~~~vs~~~~g-~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~ 295 (303)
T 2i6t_A 219 SWSVGLSVADMVDSIV--NNKKKVHSVSALAKG-YYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIH 295 (303)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH--cCCCcEEEEEEEeCC-ccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 4557777888888877 578899999999999 7999999999999999999999998544899999999999999999
Q ss_pred HHHHHH
Q 013466 414 AEKKCV 419 (442)
Q Consensus 414 ~~~~~~ 419 (442)
++++.+
T Consensus 296 ~~~~~~ 301 (303)
T 2i6t_A 296 SLQQQL 301 (303)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 987653
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=422.22 Aligned_cols=300 Identities=22% Similarity=0.254 Sum_probs=252.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCccc-ccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYE-LFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~e-al~dA 173 (442)
|||+||||+|+||+++++.|+..++..+ |.| +|++ + +++.++||.|...+ .+++.+ +++++ +++||
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~e---v~L--~Di~--~--~~~~a~dL~~~~~~--~~l~~~~~t~d~~~a~~~a 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSR---LTL--YDIA--H--TPGVAADLSHIETR--ATVKGYLGPEQLPDCLKGC 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSE---EEE--EESS--S--HHHHHHHHTTSSSS--CEEEEEESGGGHHHHHTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcE---EEE--EeCC--c--cHHHHHHHhccCcC--ceEEEecCCCCHHHHhCCC
Confidence 5999999779999999999999887543 555 4333 2 68899999998643 245553 24554 79999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH---HHHCCCCCc-ceeeccch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~---~k~s~~~p~-kvig~gT~ 249 (442)
|+||+++|.|++||++|.|++.+|++++++++++|++++ |+++++++|||+|++|+++ ++..+++|+ |+||+ |.
T Consensus 70 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~-t~ 147 (314)
T 1mld_A 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TT 147 (314)
T ss_dssp SEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEEC-CH
T ss_pred CEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEe-ec
Confidence 999999999999999999999999999999999999996 9999999999999999643 334446776 88999 99
Q ss_pred hhHHHHHHHHHHHhCCCcCcccceEEEeec-CCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 250 LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H-G~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
||+.|++++||+++|++|++|+ ++||||| |++++|+||+++ |..+ +..+++.++++++++++++|++.
T Consensus 148 Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H~G~~~~p~~s~~~----~~~~------~~~~~~~~~~~~v~~~g~eii~~ 216 (314)
T 1mld_A 148 LDIVRANAFVAELKGLDPARVS-VPVIGGHAGKTIIPLISQCT----PKVD------FPQDQLSTLTGRIQEAGTEVVKA 216 (314)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCB-CCEEECSSGGGEEECGGGCB----SCCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCcChHhEE-EEEccCCCCCcEeeecccCC----Cccc------CCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 5999999 799999999997 3332 45567788888999999999996
Q ss_pred c-CCCc-hHHHHHHHHHHHHHhhcCCC-CCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCC-CCCHHHHHH
Q 013466 329 W-GRSS-AASTAVSIVDAMKSLVTPTP-EGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV-IFDDYLRKR 404 (442)
Q Consensus 329 k-G~ss-~~s~A~~i~~aI~~~l~~~d-~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~-~L~~~E~~~ 404 (442)
+ |.++ ++++|.++++.+.+|+.+.+ ++.++++ ++++| +| ++|+|||+||++|++|+++++ .+ +|+++|+++
T Consensus 217 k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g-~y--~~~~~~~~P~~ig~~Gv~~i~-~l~~l~~~e~~~ 291 (314)
T 1mld_A 217 KAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKS-QE--TDCPYFSTPLLLGKKGIEKNL-GIGKISPFEEKM 291 (314)
T ss_dssp HTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEEC-CS--SSSSEEEEEEEEETTEEEEEC-CCCSCCHHHHHH
T ss_pred hcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCC-cc--CCceEEEEEEEEeCCeeEEec-CCCCCCHHHHHH
Confidence 5 3332 35677788888888775322 4479998 79999 68 689999999999999999997 56 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 013466 405 IAKTEQELLAEKKCVAHLTGE 425 (442)
Q Consensus 405 L~~sa~~l~~~~~~~~~~~~~ 425 (442)
|++|+++|+++++.+.+|.++
T Consensus 292 l~~s~~~l~~~~~~~~~~~~~ 312 (314)
T 1mld_A 292 IAEAIPELKASIKKGEEFVKN 312 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999765
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-51 Score=408.62 Aligned_cols=301 Identities=19% Similarity=0.227 Sum_probs=250.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE---ecCccccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELF 170 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i---~~~~~eal 170 (442)
++++||+||||+|.||+++++.|+..+++.+ |.| +|++ ++ ++.++||.|...+ ..+.. +++.++++
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~e---v~l--~Di~--~~--~~~~~dL~~~~~~--~~v~~~~~t~d~~~al 74 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSV---LHL--YDVV--NA--PGVTADISHMDTG--AVVRGFLGQQQLEAAL 74 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEEE---EEE--EESS--SH--HHHHHHHHTSCSS--CEEEEEESHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCCE---EEE--EeCC--Cc--HhHHHHhhccccc--ceEEEEeCCCCHHHHc
Confidence 3568999999889999999999998776432 555 4433 23 7789999986532 23443 22345789
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH----HHHHHHHHCCCCCc-ceee
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~----lt~~~~k~s~~~p~-kvig 245 (442)
+|||+||+++|.|++||++|.|++.+|+++++++++++.+++ |+++|+++|||+|+ +++.+++.+ ++|+ |+||
T Consensus 75 ~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~~~~~~t~~~~~~~-~~p~~rviG 152 (326)
T 1smk_A 75 TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNSTVPIAAEVFKKAG-TYDPKRLLG 152 (326)
T ss_dssp TTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHHHHT-CCCTTSEEE
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHHHHHHHHHHHHHcc-CCCcccEEE
Confidence 999999999999999999999999999999999999999985 99999999999999 555557777 5665 8999
Q ss_pred ccchhhHHHHHHHHHHHhCCCcCcccceEEEeec-CCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHH
Q 013466 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGL 324 (442)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H-G~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~e 324 (442)
+ |.||++|++++||+++|++|++|+ ++||||| |++++|+||+++|.+. +..+++.++.+++++++++
T Consensus 153 ~-~~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H~G~~~~p~~s~~~v~~~----------~~~~~~~~~~~~v~~~g~e 220 (326)
T 1smk_A 153 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPSS----------FTQEEISYLTDRIQNGGTE 220 (326)
T ss_dssp C-CHHHHHHHHHHHHHHHTCCGGGCB-CCEEECSSGGGEEECGGGCBSCCC----------CCHHHHHHHHHHHHHHHHH
T ss_pred E-eehHHHHHHHHHHHHhCcChhheE-EEEecccCCceEEEecccCeecCc----------CCHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999 5999999 8999999999988531 3455677888888889999
Q ss_pred HHHhc---CCCch--HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCH
Q 013466 325 LIKKW---GRSSA--ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 399 (442)
Q Consensus 325 ii~~k---G~ss~--~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~ 399 (442)
+++.| |.+.| +.++..++++|..|+ +|++.+++++ +++| + +|+|+|||+||++|++|++++++.++|++
T Consensus 221 ii~~k~~~gs~~~~~a~a~~~~~~ai~~~~--~~~~~v~~~~-~~~g-~--~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~ 294 (326)
T 1smk_A 221 VVEAKAGAGSATLSMAYAAVKFADACLRGL--RGDAGVIECA-FVSS-Q--VTELPFFASKVRLGRNGIEEVYSLGPLNE 294 (326)
T ss_dssp HHHHTTTSCCCCHHHHHHHHHHHHHHHHHH--HTCSCEEEEE-EEEC-C--SSSSSEEEEEEEEETTEEEEECCCCCCCH
T ss_pred HHhcccCCCCcHHHHHHHHHHHHHHHHHHh--CCCCeEEEEE-eecc-c--cCCceEEEEEEEEeCCeeEEEcCCCCCCH
Confidence 99976 55555 455666666676667 4678999998 8888 4 46899999999999999999995499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013466 400 YLRKRIAKTEQELLAEKKCVAHLTGE 425 (442)
Q Consensus 400 ~E~~~L~~sa~~l~~~~~~~~~~~~~ 425 (442)
+|+++|++|+++|+++++.+..|...
T Consensus 295 ~e~~~l~~s~~~l~~~~~~~~~~~~~ 320 (326)
T 1smk_A 295 YERIGLEKAKKELAGSIEKGVSFIRS 320 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=398.33 Aligned_cols=323 Identities=50% Similarity=0.801 Sum_probs=275.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
++++||.|+||+|+||++++..|+..+.++.++...++++|.+...+++++.++||.|..+++..+++...+.+++++|+
T Consensus 2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~ 81 (327)
T 1y7t_A 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81 (327)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCC
Confidence 45679999999999999999999998876432223455555443346678899999987544545666666778999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHH
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDEN 253 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~ 253 (442)
|+||++||.++++|++|.+++..|+++++++++++.++++|+++++++|||+|.++++..+.++++++..+.+.|.||+.
T Consensus 82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~e 161 (327)
T 1y7t_A 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHN 161 (327)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHHH
Confidence 99999999999999999999999999999999999998338999999999999999988887645766556677999999
Q ss_pred HHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcCCCc
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWGRSS 333 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG~ss 333 (442)
|+.+++++++|+++..++..+|||+||++++|+|+++.++|+|+.+++.+ .| ..++++++++++|++|++.||.++
T Consensus 162 r~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~-~~---~~~~~~~~v~~~g~~ii~~kg~~~ 237 (327)
T 1y7t_A 162 RAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM-EW---YEKVFIPTVAQRGAAIIQARGASS 237 (327)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH-HH---HHHTHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc-hh---HHHHHHHHHHHHHHHHHHccCCCc
Confidence 99999999999999999966799999999999999999999999877531 11 135667778889999999999888
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHH
Q 013466 334 AASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELL 413 (442)
Q Consensus 334 ~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~ 413 (442)
++++|.++++++.+|+.+.++++++++|++++| +||+|+|+|||+||++ ++|++++++.++|+++|+++|++|+++|+
T Consensus 238 ~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g-~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s~~~l~ 315 (327)
T 1y7t_A 238 AASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEITAQELL 315 (327)
T ss_dssp HHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSS-GGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecC-ccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 888888889999998853226889999999999 6999999999999999 99999998558999999999999999999
Q ss_pred HHHHHHHHh
Q 013466 414 AEKKCVAHL 422 (442)
Q Consensus 414 ~~~~~~~~~ 422 (442)
++++.+.++
T Consensus 316 ~~~~~~~~~ 324 (327)
T 1y7t_A 316 DEMEQVKAL 324 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998876
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-50 Score=399.60 Aligned_cols=307 Identities=18% Similarity=0.252 Sum_probs=264.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~ 171 (442)
++++||+|||| |.+|+.++..|+..++. ++.|+ |++++++++.++|+.+... ....+++.++ ++++++
T Consensus 2 ~~~~kI~VIGa-G~~G~~ia~~la~~g~~----~V~l~----D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~-d~~a~~ 71 (317)
T 2ewd_A 2 IERRKIAVIGS-GQIGGNIAYIVGKDNLA----DVVLF----DIAEGIPQGKALDITHSMVMFGSTSKVIGTD-DYADIS 71 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEEEE----CSSSSHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCc----eEEEE----eCCchHHHHHHHHHHhhhhhcCCCcEEEECC-CHHHhC
Confidence 45679999996 99999999999998863 25553 4455778888888877631 1123455544 459999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCC-Ccceeeccchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI-PAKNFHALTRL 250 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~-p~kvig~gT~L 250 (442)
+||+||+++|.|++||++|.|++.+|.+++++++++|.+++ |+++++++|||++.+++++++.+ ++ |.|+||.||.+
T Consensus 72 ~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~~~~-~~~~~rviG~~t~l 149 (317)
T 2ewd_A 72 GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQKVS-GLPHNKVCGMAGVL 149 (317)
T ss_dssp TCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHH-CCCGGGEEESCHHH
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHhh-CCCHHHEEeccCcH
Confidence 99999999999999999999999999999999999999996 99999999999999999999887 46 45999999999
Q ss_pred hHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh--
Q 013466 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK-- 328 (442)
Q Consensus 251 Ds~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~-- 328 (442)
|+.|+++++|+++|++++++.+ +|||+||++++|+||.++++|+|+.+++.+..+..++++++.++++.+++++++.
T Consensus 150 d~~r~~~~la~~lg~~~~~v~~-~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~g 228 (317)
T 2ewd_A 150 DSSRFRTFIAQHFGVNASDVSA-NVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNLK 228 (317)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcChhhceE-EEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhhc
Confidence 9999999999999999999996 8999999999999999999999999887654356677888888788899999984
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
+|.+. .+.|.++++.+.+|+ +|++.+++++++++| +||+ +|+|||+||++|++|+++++ .++|+++|+++|++|
T Consensus 229 ~g~~~-~~~a~a~~~~~~ai~--~~~~~~~~~~~~~~G-~~g~-~~~~~~~P~~i~~~Gv~~i~-~~~l~~~e~~~l~~s 302 (317)
T 2ewd_A 229 TGTAY-FAPAAAAVKMAEAYL--KDKKAVVPCSAFCSN-HYGV-KGIYMGVPTIIGKNGVEDIL-ELDLTPLEQKLLGES 302 (317)
T ss_dssp SSCCC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEESS-STTC-SSEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHH
T ss_pred CCchH-HHHHHHHHHHHHHHH--cCCCeEEEEEEEecC-ccCC-cceEEEeEEEEcCCeeEEec-CCCCCHHHHHHHHHH
Confidence 55444 446677777777777 477899999999999 7999 89999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHH
Q 013466 409 EQELLAEKKCV 419 (442)
Q Consensus 409 a~~l~~~~~~~ 419 (442)
+++|+++++.+
T Consensus 303 ~~~l~~~~~~~ 313 (317)
T 2ewd_A 303 INEVNTISKVL 313 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-49 Score=392.31 Aligned_cols=301 Identities=16% Similarity=0.177 Sum_probs=252.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||| |.+|++++..|+..++.. ++.|+ |++++++++.++|+.|.......++++.+++++++++||+
T Consensus 1 m~kI~VIGa-G~~G~~la~~L~~~g~~~---~V~l~----d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDv 72 (309)
T 1hyh_A 1 ARKIGIIGL-GNVGAAVAHGLIAQGVAD---DYVFI----DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADV 72 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCS---EEEEE----CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCC---EEEEE----cCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCE
Confidence 479999995 999999999999988632 36663 5567888899999887642111234553345699999999
Q ss_pred EEEeCCcCCC----CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchh
Q 013466 176 ALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRL 250 (442)
Q Consensus 176 VIi~ag~~~k----pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~L 250 (442)
||++.+.+++ ||++|.|++.+|+++++++++.|.+++ |+++++++|||++++++++++.+ ++|+ |+||+||.|
T Consensus 73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~~-~~~~~rvig~gt~l 150 (309)
T 1hyh_A 73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVT-GFPAHKVIGTGTLL 150 (309)
T ss_dssp EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEECTTHH
T ss_pred EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHHHHHHHHHhc-CCCHHHEeecCccc
Confidence 9999999999 999999999999999999999999996 99999999999999999999886 5665 899999999
Q ss_pred hHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHhcC
Q 013466 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKKWG 330 (442)
Q Consensus 251 Ds~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~kG 330 (442)
|++|+++++++++++++++|+. ++||+||++++|+||++.++|+|+.+++. ++.+++.++.++++.+++++++.||
T Consensus 151 d~~r~~~~~a~~l~~~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~---~~~~~~~~~~~~v~~~g~~ii~~kg 226 (309)
T 1hyh_A 151 DTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLAD---AGDIDLAAIEEEARKGGFTVLNGKG 226 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC--------CCHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCChhheEE-EEEeCCCCcEeeccccceECCEEHHHhcc---CCHHHHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999995 99999999999999999999999988743 3344567778888889999999999
Q ss_pred CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHH
Q 013466 331 RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQ 410 (442)
Q Consensus 331 ~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~ 410 (442)
.+.| +.|.++++.+.+|+ +|++.+++++++++| +|+|||+||++|++|+++++ .++|+++|+++|++|++
T Consensus 227 ~~~~-~~a~a~~~~~~ai~--~~~~~~~~~~~~~~g------~~~~~~vP~~i~~~Gv~~i~-~~~l~~~e~~~l~~s~~ 296 (309)
T 1hyh_A 227 YTSY-GVATSAIRIAKAVM--ADAHAELVVSNRRDD------MGMYLSYPAIIGRDGVLAET-TLDLTTDEQEKLLQSRD 296 (309)
T ss_dssp SCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEECTT------TCSEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHHHH
T ss_pred CchH-HHHHHHHHHHHHHH--cCCCcEEEEEEEECC------CCeEEEEEEEEeCCceEEEe-CCCCCHHHHHHHHHHHH
Confidence 8765 46667777777777 578899999999998 57899999999999999998 48999999999999999
Q ss_pred HHHHHHHHHH
Q 013466 411 ELLAEKKCVA 420 (442)
Q Consensus 411 ~l~~~~~~~~ 420 (442)
+|+++++.+.
T Consensus 297 ~l~~~~~~~~ 306 (309)
T 1hyh_A 297 YIQQRFDEIV 306 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=343.93 Aligned_cols=307 Identities=21% Similarity=0.294 Sum_probs=259.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFED 172 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~d 172 (442)
++++||+|||| |.||+.++..|+..+.++ +|.|+ |++++++++.++|+.|.. ++.....+. +.+++++++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~---~V~l~----d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 75 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAR---EIVLE----DIAKERVEAEVLDMQHGS-SFYPTVSIDGSDDPEICRD 75 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCS---EEEEE----CSSHHHHHHHHHHHHHTG-GGSTTCEEEEESCGGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCC---EEEEE----eCChhHHHHHHHHHHhhh-hhcCCeEEEeCCCHHHhCC
Confidence 44679999996 999999999999988754 36663 455677888888887765 232223332 235789999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccchhh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~LD 251 (442)
||+||++.+.|++||++|.|++.+|+++++++++.|.++ +|+++|++++||++.+++++.+.+ ++|+ |+||++|.+|
T Consensus 76 aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~-~~~~~~vig~~~~l~ 153 (319)
T 1lld_A 76 ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLT-GLPENQIFGSGTNLD 153 (319)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHH-TCCTTSEEECTTHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhc-CCCHHHEeeccccHh
Confidence 999999999999999999999999999999999999998 599999999999999999988876 4665 8999999999
Q ss_pred HHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC--C-hHHHHHHHHHHhhhhHHHHHh
Q 013466 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW--L-EEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 252 s~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~--~-~~e~~~~~~~v~~~g~eii~~ 328 (442)
+.|++..+++++++++.++.. ++||+||++++|+|+++.++|.|+.+++....+ . .+.+.+++++++.+++++++.
T Consensus 154 ~~r~~~~~a~~~~v~~~~v~~-~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~ 232 (319)
T 1lld_A 154 SARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING 232 (319)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCHHHeEE-EEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC
Confidence 999999999999999999996 889999999999999999999999887643232 2 233677788888899999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
+|.+.++ .+...++++++|+ .+++.++++|++++| .|+. .+.++|+||.++++|+++++ .++|+++|+++|++|
T Consensus 233 ~G~~~~~-~a~~~~sm~~di~--~~~~~ei~~s~~~~G-~~~~-~~~~~gvp~~~~~~Gv~~i~-~~~l~~~e~~~l~~s 306 (319)
T 1lld_A 233 KGATNYA-IGMSGVDIIEAVL--HDTNRILPVSSMLKD-FHGI-SDICMSVPTLLNRQGVNNTI-NTPVSDKELAALKRS 306 (319)
T ss_dssp CCSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECSS-BTTB-CSSEEEEEEEEETTEEECCS-CCCCCHHHHHHHHHH
T ss_pred CCCchHH-HHHHHHHHHHHHH--cCCCcEEEEEEEecC-cCCc-cceEEEEEEEEeCCeeEEEc-CCCCCHHHHHHHHHH
Confidence 9976653 5566677777777 467899999999999 6988 89999999999999999999 589999999999999
Q ss_pred HHHHHHHHHH
Q 013466 409 EQELLAEKKC 418 (442)
Q Consensus 409 a~~l~~~~~~ 418 (442)
+++|+++++.
T Consensus 307 ~~~l~~~~~~ 316 (319)
T 1lld_A 307 AETLKETAAQ 316 (319)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=359.66 Aligned_cols=300 Identities=14% Similarity=0.090 Sum_probs=231.6
Q ss_pred CCEEEEEcCCCch-HHHHHHHHHH--cCC-CCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMI-ANHLLFKLAA--GEV-LGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~V-G~~la~~L~~--~~l-~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
++||+|||| |++ +..++..|+. .++ .+ +|.|+ |++++++++ +.|+.+.......+++.+++.+++++
T Consensus 2 ~~KI~IIGa-G~v~~~~l~~~l~~~~~~l~~~---el~L~----Di~~~~~~~-~~~~~~~~~~~~~~v~~t~d~~~al~ 72 (417)
T 1up7_A 2 HMRIAVIGG-GSSYTPELVKGLLDISEDVRID---EVIFY----DIDEEKQKI-VVDFVKRLVKDRFKVLISDTFEGAVV 72 (417)
T ss_dssp CCEEEEETT-TCTTHHHHHHHHHHHTTTSCCC---EEEEE----CSCHHHHHH-HHHHHHHHHTTSSEEEECSSHHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHhcccCCCcC---EEEEE----eCCHHHHHH-HHHHHHHHhhCCeEEEEeCCHHHHhC
Confidence 579999997 765 2223345565 555 43 36664 334567775 77776643111134444444459999
Q ss_pred CCcEEEEeCCcCCCCCCcHHh--------------------HHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHH
Q 013466 172 DAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~d--------------------ll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~ 231 (442)
|||+||+++|.+++||++|.+ ++.+|++++.++++.|+++ + +||+|++|||+|++|++
T Consensus 73 ~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~-~-~A~lin~TNPvdi~t~a 150 (417)
T 1up7_A 73 DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKT-S-NATIVNFTNPSGHITEF 150 (417)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEECSSSHHHHHHH
T ss_pred CCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHH-C-CEEEEEeCChHHHHHHH
Confidence 999999999999999988842 3689999999999999999 5 99999999999999999
Q ss_pred HHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-----------ecCCCcccccccc---cccC---
Q 013466 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNA---RING--- 294 (442)
Q Consensus 232 ~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-----------~HG~t~vp~~S~a---~I~G--- 294 (442)
++|.+ ...|+||+||.++ |+++++|+.+|+++++|+. +|+| +||++++|.||.. +++|
T Consensus 151 ~~k~~--p~~rviG~c~~~~--r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~~~ 225 (417)
T 1up7_A 151 VRNYL--EYEKFIGLCNVPI--NFIREIAEMFSARLEDVFL-KYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPD 225 (417)
T ss_dssp HHHTT--CCSSEEECCSHHH--HHHHHHHHHTTCCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHHTTC---CCT
T ss_pred HHHhC--CCCCEEEeCCCHH--HHHHHHHHHhCCCHHHCeE-EEEeecceeeEEEeecCCcEehhhHHHHHHHhhCCCcC
Confidence 99986 2239999999985 9999999999999999995 9999 9999999999986 5555
Q ss_pred cch-hhhhhhcc--------C---ChHHHHHH---------HHHHhhhhHHHH----------HhcCCCchHHHHHHHHH
Q 013466 295 LPV-KEIIKDHK--------W---LEEGFTET---------IQKVRLRGGLLI----------KKWGRSSAASTAVSIVD 343 (442)
Q Consensus 295 ~p~-~~~i~~~~--------~---~~~e~~~~---------~~~v~~~g~eii----------~~kG~ss~~s~A~~i~~ 343 (442)
.|+ .++++... | ..+.++++ ++++++++++++ .++|.+.++..|..|++
T Consensus 226 ~~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t~~~~~a~~ii~ 305 (417)
T 1up7_A 226 EDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIR 305 (417)
T ss_dssp TSCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHHHHHHHHHH
T ss_pred CchHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCcHHHHHHHHHHH
Confidence 677 24432110 1 12223332 456666788988 46777777888888888
Q ss_pred HHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013466 344 AMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKC 418 (442)
Q Consensus 344 aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~ 418 (442)
+|. +|++.++++||+++| .| |+|+|+++++||++|++|++++. ..+|+++|+++++.++...+...+.
T Consensus 306 AI~-----~d~~~~~~vsv~n~G-~i~~lp~d~~vevP~~vg~~Gi~~i~-~~~L~~~e~~~l~~~~~~e~l~veA 374 (417)
T 1up7_A 306 DLE-----TDEGKIHIVNTRNNG-SIENLPDDYVLEIPCYVRSGRVHTLS-QGKGDHFALSFIHAVKMYERLTIEA 374 (417)
T ss_dssp HHH-----SSSCEEEEEEEECTT-SSTTSCTTCEEEEEEEEETTEEEEBC-CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----cCCCeEEEEEEecCC-ccCCCCCCeEEEEeEEEeCCceEEee-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 887 689999999999999 68 79999999999999999999998 6899999999999988777664443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=354.65 Aligned_cols=293 Identities=15% Similarity=0.128 Sum_probs=224.6
Q ss_pred CCEEEEEcCCCch-HHHHHHHHHH--cCC-CCCCCceEEEeccccchh--hhHHHHHHHHhccc---CCCcccEEEecCc
Q 013466 96 MVNIAVSGAAGMI-ANHLLFKLAA--GEV-LGPDQPIALKLLGSERSL--QALEGVAMELEDSL---FPLLREVKIGINP 166 (442)
Q Consensus 96 ~~KI~IIGA~G~V-G~~la~~L~~--~~l-~~~~~~I~L~l~d~d~~~--~~l~g~a~DL~~~~---~~~~~~v~i~~~~ 166 (442)
++||+|||| |++ |..++..|+. .++ .+ +|.|+ |+++ +++++. .|+.+.. .....+++.+++.
T Consensus 7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~---ev~L~----Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D~ 77 (450)
T 1s6y_A 7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVG---ELWLV----DIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLDR 77 (450)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEE---EEEEE----CCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCC---EEEEE----EcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCCH
Confidence 579999996 888 7777778887 444 22 36664 3344 677763 3444322 1222356665555
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhH--------------------HHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dl--------------------l~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+++++|||+||+++|.+++||++|.++ +.+|+++++++++.|+++| |+||+|++|||+|
T Consensus 78 ~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPvd 156 (450)
T 1s6y_A 78 RRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAG 156 (450)
T ss_dssp HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred HHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence 699999999999999999999888744 8999999999999999996 9999999999999
Q ss_pred HHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-----------ecCCCccccccccccc--
Q 013466 227 TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-----------NHSTTQVPDFLNARIN-- 293 (442)
Q Consensus 227 ~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-----------~HG~t~vp~~S~a~I~-- 293 (442)
++|++++|.++ ..|+||+||.+ .|+++++|+.+|+++++|+. +|+| +||++++|.|+...++
T Consensus 157 ivT~a~~k~~p--~~rViG~c~~~--~r~~~~la~~lgv~~~~v~~-~v~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~~ 231 (450)
T 1s6y_A 157 MVTEAVLRYTK--QEKVVGLCNVP--IGMRMGVAKLLGVDADRVHI-DFAGLNHMVFGLHVYLDGVEVTEKVIDLVAHPD 231 (450)
T ss_dssp HHHHHHHHHCC--CCCEEECCSHH--HHHHHHHHHHHTSCGGGEEE-EEEEETTEEEEEEEEETTEECHHHHHHHHSCC-
T ss_pred HHHHHHHHhCC--CCCEEEeCCcH--HHHHHHHHHHhCCCHHHcEE-EEEeeecceeEEEeeeCCcCchHhHHHHHhhhc
Confidence 99999999872 23999999997 49999999999999999995 9999 9999999999986554
Q ss_pred --C--------cchh-hhhhhcc--------C--C-hH-------------HHHHHHHHHhhhhHHHH-----Hh-----
Q 013466 294 --G--------LPVK-EIIKDHK--------W--L-EE-------------GFTETIQKVRLRGGLLI-----KK----- 328 (442)
Q Consensus 294 --G--------~p~~-~~i~~~~--------~--~-~~-------------e~~~~~~~v~~~g~eii-----~~----- 328 (442)
| .|+. ++++... | . .+ ...+.++++++++++++ ..
T Consensus 232 ~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~ 311 (450)
T 1s6y_A 232 RSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQL 311 (450)
T ss_dssp -----------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC---------
T ss_pred cccccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchh
Confidence 3 2332 2221000 0 0 11 12244556666788888 32
Q ss_pred --cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 329 --WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 329 --kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+|.+.++..|..|+++|. +|++.++++||+++| .| |+|+|+++|+||+||++|+++++ ..+|+++|++++
T Consensus 312 ~~~~~~~~~~~a~~ii~AI~-----~d~~~~~~vsv~n~G-~i~~lp~d~~vevP~vvg~~Gi~~i~-~~~L~~~e~~l~ 384 (450)
T 1s6y_A 312 EKRGGAYYSDAACSLISSIY-----NDKRDIQPVNTRNNG-AIASISAESAVEVNCVITKDGPKPIA-VGDLPVAVRGLV 384 (450)
T ss_dssp --CCSCCHHHHHHHHHHHHH-----HTCCCEEEEEEECTT-SBTTSCTTSEEEEEEEEETTEEEECC-CBCCCHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHH-----cCCCeEEEEEeecCc-eecCCCCCeEEEEeEEEcCCCeEEee-cCCCCHHHHHHH
Confidence 333345677888888887 489999999999999 67 79999999999999999999998 689999999999
Q ss_pred HHHHH
Q 013466 406 AKTEQ 410 (442)
Q Consensus 406 ~~sa~ 410 (442)
+.++.
T Consensus 385 ~~~~~ 389 (450)
T 1s6y_A 385 QQIKS 389 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87744
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=341.93 Aligned_cols=293 Identities=14% Similarity=0.090 Sum_probs=217.1
Q ss_pred CCCEEEEEcCCCch-HHHHHHHHHHc--CCCCCCCceEEEeccccchhhhHHHHHHHHhccc---CCCcccEEEecCccc
Q 013466 95 KMVNIAVSGAAGMI-ANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---FPLLREVKIGINPYE 168 (442)
Q Consensus 95 ~~~KI~IIGA~G~V-G~~la~~L~~~--~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~---~~~~~~v~i~~~~~e 168 (442)
+++||+|||| |.+ |..++..|+.. ++-. .+|.|+ |++++++++. .|+.+.. .....+++.+++.++
T Consensus 27 ~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~--~eV~L~----Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D~~e 98 (472)
T 1u8x_X 27 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPI--RKLKLY----DNDKERQDRI-AGACDVFIREKAPDIEFAATTDPEE 98 (472)
T ss_dssp CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCE--EEEEEE----CSCHHHHHHH-HHHHHHHHHHHCTTSEEEEESCHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCC--CEEEEE----eCCHHHHHHH-HHHHHHHhccCCCCCEEEEECCHHH
Confidence 3569999996 887 55678888887 5512 136664 4455777764 4665432 122345666666569
Q ss_pred ccCCCcEEEEeCCcCCCCCCcH--------------------HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 169 LFEDAEWALLIGAKPRGPGMER--------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r--------------------~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
+++|||+||++++.+++||++| ++++.+|++++++++++|+++| |+||+|++|||+|++
T Consensus 99 al~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvdi~ 177 (472)
T 1u8x_X 99 AFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIV 177 (472)
T ss_dssp HHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHHHH
T ss_pred HHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHH
Confidence 9999999999999988888888 4448999999999999999996 999999999999999
Q ss_pred HHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCc-CcccceEEEe-----------e-cCCCcccccccccc-cC
Q 013466 229 ALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-----------N-HSTTQVPDFLNARI-NG 294 (442)
Q Consensus 229 t~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p-~~V~~~~ViG-----------~-HG~t~vp~~S~a~I-~G 294 (442)
|++++|.++ +.|+||+|+.++ |+++++|+.+|+++ ++|+. +|+| + ||++++|.||...+ +|
T Consensus 178 T~~~~k~~p--~~rViG~c~~~~--r~~~~la~~lgv~~~~~v~~-~v~GlNH~~W~~~~~~~hG~d~~p~~~~~~~~~g 252 (472)
T 1u8x_X 178 AEATRRLRP--NSKILNICDMPV--GIEDRMAQILGLSSRKEMKV-RYYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYG 252 (472)
T ss_dssp HHHHHHHST--TCCEEECCSHHH--HHHHHHHHHHTCSCGGGEEE-EEEEETTEEEEEEEEETTCCBCHHHHHHHHHHHS
T ss_pred HHHHHHhCC--CCCEEEeCCcHH--HHHHHHHHHhCcCchhceeE-EEeccchhhheeeeEeCCCCEehHhHHHHHHhcC
Confidence 999999872 349999999975 99999999999997 99995 8999 8 99999999998665 34
Q ss_pred -cc----------hh-hhhhhccC--------Ch------HHHHHHHHH----------Hhh----hhHHHHH-h--cC-
Q 013466 295 -LP----------VK-EIIKDHKW--------LE------EGFTETIQK----------VRL----RGGLLIK-K--WG- 330 (442)
Q Consensus 295 -~p----------~~-~~i~~~~~--------~~------~e~~~~~~~----------v~~----~g~eii~-~--kG- 330 (442)
.| +. ++++...+ +. ..-++++++ +++ ..+++++ . +|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~ 332 (472)
T 1u8x_X 253 YIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQS 332 (472)
T ss_dssp SCCCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTS
T ss_pred CCccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 11 11 22111000 00 000111111 111 2233333 2 44
Q ss_pred --CC-----chHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCcc-CCCCceEEEEEEEEcCCCceeeccCCCCCHHHH
Q 013466 331 --RS-----SAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY-GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 402 (442)
Q Consensus 331 --~s-----s~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~y-gip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~ 402 (442)
.+ .++..|..|+++|. +|++.++++||+++| .| |+|+|+++|+||+||++|++++. ..+|+++|+
T Consensus 333 ~~~~~~~~~~~~~~a~~ii~AI~-----~d~~~v~~vsv~n~G-~i~glp~d~~veVP~vvg~~Gi~pi~-~~~Lp~~~~ 405 (472)
T 1u8x_X 333 SENSEIKIDDHASYIVDLARAIA-----YNTGERMLLIVENNG-AIANFDPTAMVEVPCIVGSNGPEPIT-VGTIPQFQK 405 (472)
T ss_dssp CCSCSSCCCTTTHHHHHHHHHHH-----HTCCEEEEEEEECTT-SBTTSCTTSEEEEEEEEETTEEEECC-CBCCCHHHH
T ss_pred cccccccccHHHHHHHHHHHHHh-----cCCCeEEEEEeecCc-eecCcCCCeEEEEeEEEcCCCceEee-cCCCCHHHH
Confidence 22 23667778888877 489999999999999 56 79999999999999999999998 689999999
Q ss_pred HHHHHH
Q 013466 403 KRIAKT 408 (442)
Q Consensus 403 ~~L~~s 408 (442)
++++.-
T Consensus 406 ~l~~~~ 411 (472)
T 1u8x_X 406 GLMEQQ 411 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998744
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=283.89 Aligned_cols=287 Identities=15% Similarity=0.131 Sum_probs=205.7
Q ss_pred CCCEEEEEcCCCch--HHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHHHhcccCCCcccEEEecCcccc
Q 013466 95 KMVNIAVSGAAGMI--ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~V--G~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~DL~~~~~~~~~~v~i~~~~~ea 169 (442)
+.+||+|||| |.+ |..++..|+....+.. +|.|++ + ++++++ ..+..+.+ ...+++.+++..+|
T Consensus 4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~g--eV~L~D--i--~~e~le~~~~~~~~l~~----~~~~I~~TtD~~eA 72 (450)
T 3fef_A 4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSG--TVALYD--L--DFEAAQKNEVIGNHSGN----GRWRYEAVSTLKKA 72 (450)
T ss_dssp CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCE--EEEEEC--S--SHHHHHHHHHHHTTSTT----SCEEEEEESSHHHH
T ss_pred CCCEEEEECC-ChhHhHHHHHHHHHhccccCC--eEEEEe--C--CHHHHHHHHHHHHHHhc----cCCeEEEECCHHHH
Confidence 4579999996 998 4678888886553321 366643 3 334443 22221221 23467778888899
Q ss_pred cCCCcEEEEeCC------------cCCCCCCcHH--hHHH--------HHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 170 FEDAEWALLIGA------------KPRGPGMERA--GLLD--------INGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 170 l~dADiVIi~ag------------~~~kpg~~r~--dll~--------~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
++|||+||++.. .|+|+|+.|. |... +|++++.++++.|+++| |+||+|++|||+|+
T Consensus 73 l~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~~tNPvdi 151 (450)
T 3fef_A 73 LSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSV 151 (450)
T ss_dssp HTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred hcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEEecCchHH
Confidence 999999999863 6999999776 5554 99999999999999996 99999999999999
Q ss_pred HHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHh----C---CCcCcccceEEEe-ecCCCcccccccccccCcchhh
Q 013466 228 NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA----G---VFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKE 299 (442)
Q Consensus 228 lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~l----g---v~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~ 299 (442)
+|++++|..+ +.|+||+|+.+ .+++..+|+.+ | +++++|+. .+.| || +.||+.++++|+++..
T Consensus 152 ~t~~~~k~~p--~~rviG~C~~~--~~~~~~~a~~l~~~lg~~~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p 222 (450)
T 3fef_A 152 CTRVLYKVFP--GIKAIGCCHEV--FGTQKLLAEMVTERLGIEVPRREDIRV-NVLGINH----FTWITKASYRHIDLLP 222 (450)
T ss_dssp HHHHHHHHCT--TCEEEECCSHH--HHHHHHHHHHHHHHHCCCCSCGGGEEE-EEEEETT----EEEEEEEEETTEEHHH
T ss_pred HHHHHHHHCC--CCCEEEeCCcH--HHHHHHHHHHHHhhcCCCCCChhHeEE-EEeeecC----eEeEEEEEECCEEChH
Confidence 9999998742 24999999994 99999999999 5 77999994 8899 99 9999999999988875
Q ss_pred hhhh-------c-------cCCh------HHH-HHHHHHH----------------------------------------
Q 013466 300 IIKD-------H-------KWLE------EGF-TETIQKV---------------------------------------- 318 (442)
Q Consensus 300 ~i~~-------~-------~~~~------~e~-~~~~~~v---------------------------------------- 318 (442)
.+.+ . .|.. +.+ .++.++.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~ 302 (450)
T 3fef_A 223 IFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDR 302 (450)
T ss_dssp HHHHHHHHHTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHH
T ss_pred HHHHHHHhhcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHH
Confidence 3311 0 0100 000 0111110
Q ss_pred h---hhhHHHHHhcC---CCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeec
Q 013466 319 R---LRGGLLIKKWG---RSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV 392 (442)
Q Consensus 319 ~---~~g~eii~~kG---~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~ 392 (442)
. ++-.+...... ...++..|..|+++|. +|++.++++||+++|...|+|+|+++++||++|++|++++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ii~aI~-----~d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~ 377 (450)
T 3fef_A 303 AEKRQETERLIVQQRGVAEKASGEEGVNIIAALL-----GLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPIL 377 (450)
T ss_dssp HHHHHHHHHHHHTTCCCCCSCCSCCHHHHHHHHT-----TSCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBC
T ss_pred HHHHHHHHHHhcCCcCcCcCccHHHHHHHHHHHH-----cCCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecc
Confidence 0 00001111000 0001234667777765 68999999999999943489999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHH
Q 013466 393 KDVIFDDYLRKRIAKT 408 (442)
Q Consensus 393 ~~~~L~~~E~~~L~~s 408 (442)
..+|++.++..++.-
T Consensus 378 -~g~Lp~~~~~l~~~~ 392 (450)
T 3fef_A 378 -SGALPKGVEMLAARH 392 (450)
T ss_dssp -CCCCCHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHH
Confidence 689999999987643
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-31 Score=276.76 Aligned_cols=286 Identities=15% Similarity=0.154 Sum_probs=201.5
Q ss_pred CCEEEEEcCCCchHHH--HHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcc--cCCCcccEEEecCccccc
Q 013466 96 MVNIAVSGAAGMIANH--LLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFPLLREVKIGINPYELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~--la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~--~~~~~~~v~i~~~~~eal 170 (442)
++||+|||| |.||.+ ++..|+. .++.+ .+|.|+ |++++++++....+.+. ......+++.+++.++++
T Consensus 3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~--~eV~L~----Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal 75 (480)
T 1obb_A 3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG--STVTLM----DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVI 75 (480)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT--CEEEEE----CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHhcCcCCC--CEEEEE----eCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHh
Confidence 579999996 998644 5668874 33312 246674 44556677633322221 112234566666656999
Q ss_pred CCCcEEEEeCCc------------CCCCCCcH--Hh------------HHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 171 EDAEWALLIGAK------------PRGPGMER--AG------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 171 ~dADiVIi~ag~------------~~kpg~~r--~d------------ll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+|||+||++++. |+|+|+.| .+ ++.+|+++++++++.|+++| |+||+|++|||
T Consensus 76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNP 154 (480)
T 1obb_A 76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAANP 154 (480)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSSC
T ss_pred CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 999999999875 66778765 44 48899999999999999996 99999999999
Q ss_pred hhHHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh
Q 013466 225 CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD 303 (442)
Q Consensus 225 vd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~ 303 (442)
+|++|++++|+. +.|+||+||.+|+ +++++ +.+|+++++|+. +|+| || +.||.+.+.+|+++...+.+
T Consensus 155 vdi~t~~~~k~p---~~rviG~c~~~~~--~~~~l-~~lgv~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~ 223 (480)
T 1obb_A 155 IFEGTTLVTRTV---PIKAVGFCHGHYG--VMEIV-EKLGLEEEKVDW-QVAGVNH----GIWLNRFRYNGGNAYPLLDK 223 (480)
T ss_dssp HHHHHHHHHHHS---CSEEEEECSGGGH--HHHHH-HHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHH
T ss_pred HHHHHHHHHHCC---CCcEEecCCCHHH--HHHHH-HHhCCCHHHceE-EEEeecc----hhhhhheeeCCeEcHHHHHH
Confidence 999999998842 3499999999996 68999 999999999995 9999 99 88887776666544322110
Q ss_pred ------------c-----------------------------cCC-------------------hH-----H----HHHH
Q 013466 304 ------------H-----------------------------KWL-------------------EE-----G----FTET 314 (442)
Q Consensus 304 ------------~-----------------------------~~~-------------------~~-----e----~~~~ 314 (442)
. .|. .+ + ..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~ 303 (480)
T 1obb_A 224 WIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKV 303 (480)
T ss_dssp HHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHccCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHH
Confidence 0 010 00 0 0111
Q ss_pred HHHHhhhhHHHHHhc---C--------C------------------CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeC
Q 013466 315 IQKVRLRGGLLIKKW---G--------R------------------SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 365 (442)
Q Consensus 315 ~~~v~~~g~eii~~k---G--------~------------------ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~ 365 (442)
+....+..+++.+.. . . ...+..|..|+++|. +|++.++.++|.++
T Consensus 304 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~-----~~~~~~~~vnv~N~ 378 (480)
T 1obb_A 304 TEITKKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALL-----NDNKARFVVNIPNK 378 (480)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHH-----HCCCEEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHH-----hCCCeEEEEEeeCC
Confidence 111111222222211 1 0 001245788888887 47889999999999
Q ss_pred CCccCCCCceEEEEEEEEcCCCceeeccCCC-CCHHHHHH-HH
Q 013466 366 GNPYGIAEDIVFSMPCRSKGDGDYELVKDVI-FDDYLRKR-IA 406 (442)
Q Consensus 366 G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~-L~~~E~~~-L~ 406 (442)
|.+.|+|+|+++++||+++++|+.++. ..+ |.+..+.. ++
T Consensus 379 G~I~~lp~d~vVEvp~~v~~~G~~p~~-~g~~lP~~~~~l~~~ 420 (480)
T 1obb_A 379 GIIHGIDDDVVVEVPALVDKNGIHPEK-IEPPLPDRVVKYYLR 420 (480)
T ss_dssp TSSTTSCTTSEEEEEEEEETTEEEECC-CSSCCCHHHHHHTHH
T ss_pred ceeCCCCCCeEEEEEEEEcCCCCEeec-cCCCCCHHHHhHHHH
Confidence 988999999999999999999999987 466 99988877 54
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=270.15 Aligned_cols=284 Identities=15% Similarity=0.100 Sum_probs=200.1
Q ss_pred CEEEEEcCCCchHHH--HHHHHHHcCCCC-CCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANH--LLFKLAAGEVLG-PDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~--la~~L~~~~l~~-~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~ 171 (442)
|||+|||| |++|++ +...|+....++ .+.+|.| + |++++++++.+.++++... ....+++.+++.++|++
T Consensus 1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L--~--Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~ 75 (477)
T 3u95_A 1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYL--M--DVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIE 75 (477)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEE--E--CSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHT
T ss_pred CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEE--E--CCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhC
Confidence 69999996 999987 444566655543 2234555 4 3456888988888887642 22246777888889999
Q ss_pred CCcEEEEeCCc-------------------CCCCCCcHHhHH---------------HHHHHHHHHHHHHHHhhhCCCeE
Q 013466 172 DAEWALLIGAK-------------------PRGPGMERAGLL---------------DINGQIFAEQGKALNAVASRNVK 217 (442)
Q Consensus 172 dADiVIi~ag~-------------------~~kpg~~r~dll---------------~~N~~Ii~~i~~~I~~~a~p~a~ 217 (442)
||||||+++|. |+|+|++|.++. .+|++++.+++++|+++| |+||
T Consensus 76 gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~-P~A~ 154 (477)
T 3u95_A 76 GADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMA-PKAY 154 (477)
T ss_dssp TCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHC-TTCE
T ss_pred CCCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhC-CCeE
Confidence 99999999863 568888876653 368999999999999996 9999
Q ss_pred EEEeCCchhHHHHHHHHHCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcc
Q 013466 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLP 296 (442)
Q Consensus 218 vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p 296 (442)
+|++|||++++|++++|++ +. |+||.|.. .+....+++.||+++++|+. .+.| || +.||...+.+|++
T Consensus 155 ~in~tNP~~i~t~a~~~~~-~~--k~vGlC~~---~~~~~~~~~~Lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D 223 (477)
T 3u95_A 155 LMQTANPVFEITQAVRRWT-GA--NIIGFCHG---VAGVYEVFERLGLDPEEVDW-QVAGVNH----GIWLNRFRYRGKD 223 (477)
T ss_dssp EEECSSCHHHHHHHHHHHH-CC--CEEEECCG---GGHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEE
T ss_pred EEEecChHHHHHHHHHHhC-CC--CeEEECCC---HHHHHHHHHHhCCCHHHcEE-EEeecCC----CeeeeeeeecCCc
Confidence 9999999999999999987 34 89999875 34445678889999999994 7789 89 7888888877765
Q ss_pred hhhhhhh------------ccCC---------------------------------hH-------------------HHH
Q 013466 297 VKEIIKD------------HKWL---------------------------------EE-------------------GFT 312 (442)
Q Consensus 297 ~~~~i~~------------~~~~---------------------------------~~-------------------e~~ 312 (442)
+...+.+ ..|+ .+ .+.
T Consensus 224 ~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (477)
T 3u95_A 224 AYPLLDEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFH 303 (477)
T ss_dssp CHHHHHHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHH
T ss_pred ccHHHHHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHH
Confidence 4432210 0000 00 011
Q ss_pred HHHHHHhh----hhHHHHH--------h-----cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCce
Q 013466 313 ETIQKVRL----RGGLLIK--------K-----WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDI 375 (442)
Q Consensus 313 ~~~~~v~~----~g~eii~--------~-----kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv 375 (442)
+..++... ...++.+ . .+...++..|..|+++|. +|++.++.++|.++|..-++|+|.
T Consensus 304 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~AI~-----~~~~~~~~vNv~N~G~I~nLP~Da 378 (477)
T 3u95_A 304 EHLRRARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSGEQHIPFINAIA-----NNKRVRLFLNVENQGALKDFPDDL 378 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCCCSHHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCTTS
T ss_pred HHHHHHHHHHHHHHHHHhhccchhcccccchhcccccccHHHHHHHHHHHh-----CCCCeEEEEEeecCcccCCCCCCc
Confidence 11111110 0011110 0 111123456788888887 488999999999999878999999
Q ss_pred EEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 376 VFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 376 ~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
++++||+|+++|+.++. ..++......
T Consensus 379 vVEVpc~Vd~~Gi~P~~-vg~~p~~~~~ 405 (477)
T 3u95_A 379 VMELPVWVDSSGIHREK-VEPDLTHRIK 405 (477)
T ss_dssp EEEEEEEEETTEEEECC-CCSCCCHHHH
T ss_pred EEEEEEEEcCCCccccc-CCCCCHHHHH
Confidence 99999999999998765 3345444433
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-07 Score=89.08 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=89.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH---HHhccc--C-CC-----cccEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSL--F-PL-----LREVKIGI 164 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~---DL~~~~--~-~~-----~~~v~i~~ 164 (442)
..||+|||| |.+|+.+|..++..|+ ++.|++.+.+.-....+.+.. .+.... . .. ...++.++
T Consensus 6 ~~~VaViGa-G~MG~giA~~~a~~G~-----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~ 79 (319)
T 3ado_A 6 AGDVLIVGS-GLVGRSWAMLFASGGF-----RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT 79 (319)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC
T ss_pred CCeEEEECC-cHHHHHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc
Confidence 369999996 9999999999999986 477754332111111111111 111110 0 10 13566777
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCccee
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvi 244 (442)
+..++++|||+||-+.- +|.++-+++-.+|.+++.|++++ .||.......-+.... ..|.|++
T Consensus 80 ~l~~a~~~ad~ViEav~--------------E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is~ia~~~-~~p~r~i 142 (319)
T 3ado_A 80 NLAEAVEGVVHIQECVP--------------ENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPSKLFTGL-AHVKQCI 142 (319)
T ss_dssp CHHHHTTTEEEEEECCC--------------SCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHHHHHTTC-TTGGGEE
T ss_pred chHhHhccCcEEeeccc--------------cHHHHHHHHHHHHHHHhhhccee--ehhhhhccchhhhhhc-cCCCcEE
Confidence 66789999999998732 36788999999999998888877 8888764433333333 2233444
Q ss_pred ec------------------cchhhHHHHHHHHHHHhCC
Q 013466 245 HA------------------LTRLDENRAKCQLALKAGV 265 (442)
Q Consensus 245 g~------------------gT~LDs~R~~~~lA~~lgv 265 (442)
|+ .|.-++...-..+++.+|-
T Consensus 143 g~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk 181 (319)
T 3ado_A 143 VAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQ 181 (319)
T ss_dssp EEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred EecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 32 3444555445556677763
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.1e-06 Score=80.15 Aligned_cols=107 Identities=13% Similarity=0.166 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc----------CC-----Cccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----------FP-----LLRE 159 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~----------~~-----~~~~ 159 (442)
+++||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.....+.+.. .. ....
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~-----~V~l~----d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 72 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGF-----AVTAY----DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG 72 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC
Confidence 4579999995 9999999999999885 36663 445555554333221100 00 0123
Q ss_pred EEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 160 v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++.+++..+++++||+||.+... +.++.+++...+.+++.++++++..|...
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~il~s~tS~~ 124 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTIFATNSSTL 124 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred eEEeCCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 45666666789999999998541 23456666667777776788776555443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=78.59 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=73.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc----CCCcccEEEecCcccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~----~~~~~~v~i~~~~~ea 169 (442)
..++||+|||+ |.+|.+++..|+..|. ++.++ +++++.++.+..+-.... ..+..++..+++..++
T Consensus 27 ~~~mkI~VIGa-G~mG~alA~~La~~G~-----~V~l~----~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea 96 (356)
T 3k96_A 27 PFKHPIAILGA-GSWGTALALVLARKGQ-----KVRLW----SYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKAS 96 (356)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHTTTC-----CEEEE----CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHH
T ss_pred ccCCeEEEECc-cHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHH
Confidence 34579999995 9999999999998874 36664 444455554433211110 0122356777777789
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+++||+||++.. .+.++++.+.+..+..++.+++.++|-.+
T Consensus 97 ~~~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 97 LEGVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HTTCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HhcCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999999999843 23567777788877667888998888654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=8.2e-06 Score=79.78 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh--------cccC-C--------
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DSLF-P-------- 155 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~--------~~~~-~-------- 155 (442)
..+++||+|||+ |.+|..++..|+..|. +|.++ |++.++++.....+. .... .
T Consensus 12 ~~~~~~I~VIG~-G~mG~~iA~~la~~G~-----~V~~~----d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~ 81 (302)
T 1f0y_A 12 KIIVKHVTVIGG-GLMGAGIAQVAAATGH-----TVVLV----DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFV 81 (302)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhH
Confidence 344679999995 9999999999999874 36553 444454442211111 1000 0
Q ss_pred --CcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 156 --LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 156 --~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
...+++.+++..+++++||+||++... +..+.+++...+..++.++++|+..++..
T Consensus 82 ~~~~~~i~~~~~~~~~~~~aD~Vi~avp~--------------~~~~~~~v~~~l~~~~~~~~iv~s~ts~i 139 (302)
T 1f0y_A 82 EKTLSTIATSTDAASVVHSTDLVVEAIVE--------------NLKVKNELFKRLDKFAAEHTIFASNTSSL 139 (302)
T ss_dssp HHHHHTEEEESCHHHHTTSCSEEEECCCS--------------CHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred HHHHhceEEecCHHHhhcCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence 012466666656699999999998421 23445566666777765677765444433
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.8e-05 Score=82.33 Aligned_cols=102 Identities=10% Similarity=0.088 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH----HHhcc-cC------CCcccEEEe
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDS-LF------PLLREVKIG 163 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~----DL~~~-~~------~~~~~v~i~ 163 (442)
+++||+|||+ |.+|..+|..|+..|+ +|.+++ ++.++...... .+... .. ....+++.+
T Consensus 53 ~i~kVaVIGa-G~MG~~IA~~la~aG~-----~V~l~D----~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t 122 (460)
T 3k6j_A 53 DVNSVAIIGG-GTMGKAMAICFGLAGI-----ETFLVV----RNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT 122 (460)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEEC----SCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCC-----eEEEEE----CcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe
Confidence 3579999995 9999999999999885 366643 33332221110 11100 00 011345665
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv 221 (442)
++ ++++++||+||.+.. .+..+.+++...|.+++.|+++|+..
T Consensus 123 ~d-l~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIlasn 165 (460)
T 3k6j_A 123 SD-FHKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIFGTN 165 (460)
T ss_dssp SC-GGGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred CC-HHHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEEEec
Confidence 54 579999999999843 13566677777788887788887543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=86.30 Aligned_cols=146 Identities=10% Similarity=0.048 Sum_probs=88.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh-------cc-cCCCcccEEEecCcc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-------DS-LFPLLREVKIGINPY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~-------~~-~~~~~~~v~i~~~~~ 167 (442)
..||+|||| |.+|+.+|..++..|+ ++.|++.+.+........+..-+. .. .......++. ++++
T Consensus 316 i~~v~ViGa-G~MG~gIA~~~a~aG~-----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 388 (742)
T 3zwc_A 316 VSSVGVLGL-GTMGRGIAISFARVGI-----SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST 388 (742)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTC-----EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCG
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC-----chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcH
Confidence 469999996 9999999999999886 466654322111111111111111 00 0011123444 4578
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceee--
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH-- 245 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig-- 245 (442)
++++|||+||-+.- +|.++-+++-++|.+++.|++++ .||...+-...+.+.. ..|.|++|
T Consensus 389 ~~l~~aDlVIEAV~--------------E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~i~~ia~~~-~~p~r~ig~H 451 (742)
T 3zwc_A 389 KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDIASST-DRPQLVIGTH 451 (742)
T ss_dssp GGGGSCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHHTTS-SCGGGEEEEE
T ss_pred HHHhhCCEEEEecc--------------ccHHHHHHHHHHHhhcCCCCceE--EecCCcCChHHHHhhc-CCcccccccc
Confidence 99999999998732 36788899999999999889877 8887653332232333 23345443
Q ss_pred ----------------ccchhhHHHHHHHHHHHhCC
Q 013466 246 ----------------ALTRLDENRAKCQLALKAGV 265 (442)
Q Consensus 246 ----------------~gT~LDs~R~~~~lA~~lgv 265 (442)
-.|.-++...-..+++++|-
T Consensus 452 FfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK 487 (742)
T 3zwc_A 452 FFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGK 487 (742)
T ss_dssp CCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 23555555555556777773
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=81.94 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc----c-CCC---------cccE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-FPL---------LREV 160 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~----~-~~~---------~~~v 160 (442)
+++||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.....+... . ... ..++
T Consensus 4 ~~~kVgVIGa-G~MG~~IA~~la~aG~-----~V~l~----D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 73 (483)
T 3mog_A 4 NVQTVAVIGS-GTMGAGIAEVAASHGH-----QVLLY----DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRL 73 (483)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhce
Confidence 3569999995 9999999999999885 36664 44555555433222111 0 000 1245
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+.++ +++++++||+||.+.. .+..+.+++...+.+++.++++++.-|
T Consensus 74 ~~~~-~~~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Ilasnt 120 (483)
T 3mog_A 74 IPVT-DIHALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLLTTNT 120 (483)
T ss_dssp EEEC-CGGGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred eEeC-CHHHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEEEecC
Confidence 5554 4678999999999843 134566667777777776787764433
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.2e-05 Score=79.94 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC---------------
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------- 156 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--------------- 156 (442)
+.+++||+|||+ |.+|..++..|+.. |.. ++.++ |+++++..+.+..|.....+.
T Consensus 15 ~~~~mkIaVIGl-G~mG~~lA~~la~~~G~~----~V~~~----D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~ 85 (478)
T 3g79_A 15 RGPIKKIGVLGM-GYVGIPAAVLFADAPCFE----KVLGF----QRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVV 85 (478)
T ss_dssp HCSCCEEEEECC-STTHHHHHHHHHHSTTCC----EEEEE----CCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHH
T ss_pred cCCCCEEEEECc-CHHHHHHHHHHHHhCCCC----eEEEE----ECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhc
Confidence 456789999995 99999999999998 641 25554 334451111222222211111
Q ss_pred -cccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe
Q 013466 157 -LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (442)
Q Consensus 157 -~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv 221 (442)
..+++.+++ ++++++||+||++.+.|..+..++ ..+...+....+.|.++..++.+|+.-
T Consensus 86 ~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~ 146 (478)
T 3g79_A 86 KAGKFECTPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLE 146 (478)
T ss_dssp HTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEEC
T ss_pred ccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 235677776 899999999999988775433221 001223344444455444445554443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.89 E-value=2e-05 Score=73.66 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
+++|+||+|||+ |.+|..++..|...+. ++.+. .+++.++++..+.++.. ....++.+++++
T Consensus 20 ~m~mmkI~IIG~-G~mG~~la~~l~~~g~-----~V~~v---~~r~~~~~~~l~~~~g~---------~~~~~~~~~~~~ 81 (220)
T 4huj_A 20 FQSMTTYAIIGA-GAIGSALAERFTAAQI-----PAIIA---NSRGPASLSSVTDRFGA---------SVKAVELKDALQ 81 (220)
T ss_dssp GGGSCCEEEEEC-HHHHHHHHHHHHHTTC-----CEEEE---CTTCGGGGHHHHHHHTT---------TEEECCHHHHTT
T ss_pred hhcCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEEE---ECCCHHHHHHHHHHhCC---------CcccChHHHHhc
Confidence 344689999995 9999999999998774 24441 26666777766554421 122356778999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+|+||++.. .+.+.++.+.+.. . ++.+|+.++||..
T Consensus 82 aDvVilavp----------------~~~~~~v~~~l~~-~-~~~ivi~~~~g~~ 117 (220)
T 4huj_A 82 ADVVILAVP----------------YDSIADIVTQVSD-W-GGQIVVDASNAID 117 (220)
T ss_dssp SSEEEEESC----------------GGGHHHHHTTCSC-C-TTCEEEECCCCBC
T ss_pred CCEEEEeCC----------------hHHHHHHHHHhhc-c-CCCEEEEcCCCCC
Confidence 999999843 1224445544444 2 5679999999985
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.8e-05 Score=80.98 Aligned_cols=105 Identities=9% Similarity=0.077 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh--------cc-cCC---CcccEEE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE--------DS-LFP---LLREVKI 162 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~--------~~-~~~---~~~~v~i 162 (442)
.++||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.....++ .. ..+ -....++
T Consensus 36 ~~~kV~VIGa-G~MG~~iA~~la~~G~-----~V~l~----D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 105 (463)
T 1zcj_A 36 PVSSVGVLGL-GTMGRGIAISFARVGI-----SVVAV----ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF 105 (463)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTC-----EEEEE----CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh
Confidence 3579999995 9999999999999875 36554 344444432211111 00 000 0012345
Q ss_pred ecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
++ +++++++||+||++.. .+..+.+++...+..++.++++|+. |...
T Consensus 106 ~~-~~~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii~s--nTs~ 152 (463)
T 1zcj_A 106 SS-STKELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFLCT--NTSA 152 (463)
T ss_dssp ES-CGGGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEEEE--CCSS
T ss_pred cC-CHHHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEEEe--CCCC
Confidence 44 5689999999999853 1345556666667777767877754 5543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.8e-05 Score=73.81 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+ |++|..++..|...+. .. ++|.++ |++.++++....++ .+....+..+++++||+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~-~~-~~V~v~----dr~~~~~~~l~~~~---------gi~~~~~~~~~~~~aDv 66 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGY-DP-NRICVT----NRSLDKLDFFKEKC---------GVHTTQDNRQGALNADV 66 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTC-CG-GGEEEE----CSSSHHHHHHHHTT---------CCEEESCHHHHHSSCSE
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCC-CC-CeEEEE----eCCHHHHHHHHHHc---------CCEEeCChHHHHhcCCe
Confidence 579999995 9999999999999884 11 246663 55556655443211 24556677889999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh-hCCCeEEEEeCCchh
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNPCN 226 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~-a~p~a~vivvtNPvd 226 (442)
||++.- | +.+.++.+.|..+ ..++.+++.+++.+.
T Consensus 67 Vilav~----p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 67 VVLAVK----P------------HQIKMVCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp EEECSC----G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred EEEEeC----H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence 999852 1 2234444555554 446768877777664
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.78 E-value=7.3e-05 Score=77.58 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=69.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~~~~ 166 (442)
|||+|||+ |.||..++..|+..|. ++.++ |+++++++.+.........+. ..+++.+++.
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~-----~V~~~----D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGA-----NVRCI----DTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCC-----EEEEE----ECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 69999995 9999999999999874 35553 455566554433111100000 1246777777
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++++||+||++.+.|.++..+ -+...+.+.++.|.++..++.+|+..|
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDGS------ADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHhcCCEEEEEcCCCcccCCC------cChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 77899999999998776543321 123445555666666554566665555
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.77 E-value=5e-05 Score=79.44 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC---------cccEEEecC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL---------LREVKIGIN 165 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~---------~~~v~i~~~ 165 (442)
+++||+|||+ |.||..++..|+..+. + -++.++ |+++++++.+.........+. ...++.+++
T Consensus 8 ~~mkI~VIG~-G~vG~~~A~~La~~g~-g--~~V~~~----D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~ 79 (481)
T 2o3j_A 8 KVSKVVCVGA-GYVGGPTCAMIAHKCP-H--ITVTVV----DMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSD 79 (481)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHHHCT-T--SEEEEE----CSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-C--CEEEEE----ECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECC
Confidence 3579999995 9999999999998731 0 125553 455565554321100000000 113566666
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe-CCchhHH
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTN 228 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv-tNPvd~l 228 (442)
..+++++||+||++.+.|.+.+.++.+. .-+...+.+.++.|.++..++.+|+.. |+|....
T Consensus 80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~-~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~ 142 (481)
T 2o3j_A 80 IPKAIAEADLIFISVNTPTKMYGRGKGM-APDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA 142 (481)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTT-SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred HHHHhhcCCEEEEecCCccccccccccC-CCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH
Confidence 5688999999999988776543222210 111234555566666665456665543 6776543
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=5.3e-05 Score=83.16 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc----c-C---------CCcccEE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L-F---------PLLREVK 161 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~----~-~---------~~~~~v~ 161 (442)
++||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.....+.+. . . ....+++
T Consensus 312 ~~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l~----D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 381 (725)
T 2wtb_A 312 IKKVAIIGG-GLMGSGIATALILSNY-----PVILK----EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLK 381 (725)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHTTTC-----CEEEE----CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEE
T ss_pred CcEEEEEcC-CHhhHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceE
Confidence 568999995 9999999999999885 36664 44444443211111100 0 0 0123466
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.++ +++++++||+||.+.. .+..+.+++...+.+++.+++++ ++|.
T Consensus 382 ~~~-d~~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asnt 427 (725)
T 2wtb_A 382 GSL-DYESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNT 427 (725)
T ss_dssp EES-SSGGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECC
T ss_pred EeC-CHHHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCC
Confidence 655 4589999999999843 23455666667777777677765 5554
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.7e-05 Score=77.77 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=72.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--------CCcccEEEecCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--------PLLREVKIGINPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--------~~~~~v~i~~~~~e 168 (442)
|||+|||+ |.||..++..|+. +. ++.++ |++.++++.+.....+... ....++..+++..+
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~-----~V~~~----d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~ 69 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QN-----EVTIV----DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA 69 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TS-----EEEEE----CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CC-----EEEEE----ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence 58999995 9999999999997 62 25553 4555555543221100000 00113456665567
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEE-eCCchhHHHHHHHH
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLK 234 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~viv-vtNPvd~lt~~~~k 234 (442)
++++||+||++...+..++..+.|+ ..+.+.++.|.. ..++.+|+. .|||.+..-.+...
T Consensus 70 ~~~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~ 130 (402)
T 1dlj_A 70 AYKEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQK 130 (402)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHH
T ss_pred HhcCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHH
Confidence 8999999999876553222333332 234444444444 346777666 79999887665543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=74.45 Aligned_cols=115 Identities=11% Similarity=0.026 Sum_probs=67.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEecCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGINP 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~~~~ 166 (442)
|||+|||+ |.||..++..|+..|. ++.++ |++.++++...........+. ..+++.+++.
T Consensus 1 mkI~VIG~-G~vG~~~A~~la~~G~-----~V~~~----d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~ 70 (436)
T 1mv8_A 1 MRISIFGL-GYVGAVCAGCLSARGH-----EVIGV----DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDF 70 (436)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCH
Confidence 58999994 9999999999999774 25553 455566554432100000000 1236666666
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCC---CeEEEEe-CCchhH
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR---NVKVIVV-GNPCNT 227 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p---~a~vivv-tNPvd~ 227 (442)
.+++++||+||++.+.|..... ..|+ ..+.+.++.|..+..+ +.+|+.. |+|...
T Consensus 71 ~~~~~~aDvviiaVptp~~~~~-~~dl-----~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 71 KKAVLDSDVSFICVGTPSKKNG-DLDL-----GYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp HHHHHTCSEEEECCCCCBCTTS-SBCC-----HHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred HHHhccCCEEEEEcCCCcccCC-Ccch-----HHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 6789999999999776543221 1221 2233344444444335 5666655 788665
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=72.89 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccchhh-----hHHHHHHHHhcccC----CCcccEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSLF----PLLREVKIGI 164 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~--~~~I~L~l~d~d~~~~-----~l~g~a~DL~~~~~----~~~~~v~i~~ 164 (442)
|+||+|||+ |.+|..++..|+..|.... ..+|.++ +++.+ .++.+...-....+ .+...+..++
T Consensus 21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~~----~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRMW----IRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEEE----CCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEEE----ECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 468999995 9999999999998762110 0136664 33333 44433221111000 1112466666
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHh----hhCCCeEEEEeCCch
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA----VASRNVKVIVVGNPC 225 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~----~a~p~a~vivvtNPv 225 (442)
+..+++++||+||++.. .+.+.++.+.|.. +..++.+++.++|-.
T Consensus 96 ~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 96 DLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp STHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred CHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 66778999999999843 1346666667765 555788898888853
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00028 Score=67.24 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+ |.+|..++..|...+. +.+.++ |++.++++.....+ .+....+..+.++++|+
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~----~~v~~~----~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~Dv 71 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGF----RIVQVY----SRTEESARELAQKV---------EAEYTTDLAEVNPYAKL 71 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTC----CEEEEE----CSSHHHHHHHHHHT---------TCEEESCGGGSCSCCSE
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC----eEEEEE----eCCHHHHHHHHHHc---------CCceeCCHHHHhcCCCE
Confidence 469999995 9999999999998774 124442 55556555433221 13344556678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
||++... ..+.++.+.+.....++.+++..++-
T Consensus 72 vi~av~~----------------~~~~~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 72 YIVSLKD----------------SAFAELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp EEECCCH----------------HHHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred EEEecCH----------------HHHHHHHHHHHhhcCCCcEEEECCCC
Confidence 9998441 12355556666554578888888763
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.3e-05 Score=71.79 Aligned_cols=100 Identities=11% Similarity=0.207 Sum_probs=64.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+ |.+|..++..|...+.+.. .+|.++ |++.++++..+.++ .+....+..+++++||+
T Consensus 2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~-~~V~~~----~r~~~~~~~~~~~~---------g~~~~~~~~e~~~~aDv 66 (247)
T 3gt0_A 2 DKQIGFIGC-GNMGMAMIGGMINKNIVSS-NQIICS----DLNTANLKNASEKY---------GLTTTTDNNEVAKNADI 66 (247)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTSSCG-GGEEEE----CSCHHHHHHHHHHH---------CCEECSCHHHHHHHCSE
T ss_pred CCeEEEECc-cHHHHHHHHHHHhCCCCCC-CeEEEE----eCCHHHHHHHHHHh---------CCEEeCChHHHHHhCCE
Confidence 368999995 9999999999999886432 246553 55666665443322 13344566788999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
||++. .| +.+.++.+.+..+..++.+++..++-+.
T Consensus 67 Vilav-~~---------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 67 LILSI-KP---------------DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp EEECS-CT---------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred EEEEe-CH---------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 99985 22 1244455556655446667776666654
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=75.42 Aligned_cols=120 Identities=10% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH--------HhcccCCCcccEEEecCcc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFPLLREVKIGINPY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D--------L~~~~~~~~~~v~i~~~~~ 167 (442)
+|||+|||+ |.||..++..|+. |. ++.++ |+++++++.+... +++.......+++.+++..
T Consensus 36 ~mkIaVIGl-G~mG~~lA~~La~-G~-----~V~~~----D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ 104 (432)
T 3pid_A 36 FMKITISGT-GYVGLSNGVLIAQ-NH-----EVVAL----DIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKH 104 (432)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHT-TS-----EEEEE----CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHc-CC-----eEEEE----ecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHH
Confidence 579999995 9999999999987 53 35553 4455555543321 1100000012467777777
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe-CCchhHHHHHH
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNTNALIC 232 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv-tNPvd~lt~~~ 232 (442)
+++++||+||++...+..+.....|+ ..+.+.++.|.+. .++.+|+.- |-|....-.+.
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl-----~~V~~v~~~i~~l-~~g~iVV~~STv~pgtt~~l~ 164 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNT-----STVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIK 164 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEEC-----HHHHHHHHHHHHH-CTTSEEEECSCCCTTHHHHHH
T ss_pred HHHhCCCEEEEeCCCccccccccccH-----HHHHHHHHHHHhc-CCCcEEEEeCCCChHHHHHHH
Confidence 99999999999865442221111221 2233333444442 466655544 45655444433
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00017 Score=68.38 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh--HHHH--------HHHHhcccCCCcccEEEec
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGV--------AMELEDSLFPLLREVKIGI 164 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~--l~g~--------a~DL~~~~~~~~~~v~i~~ 164 (442)
..+||+|||+ |.+|.+++..|+..|. +|.++ |++.++ .+.. ..++.... + ... ..
T Consensus 18 ~~~kIgiIG~-G~mG~alA~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~ 82 (245)
T 3dtt_A 18 QGMKIAVLGT-GTVGRTMAGALADLGH-----EVTIG----TRDPKATLARAEPDAMGAPPFSQWLPEH-P---HVH-LA 82 (245)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHTCC-------CCHHHHGGGS-T---TCE-EE
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----eCChhhhhhhhhhhhhcchhhhHHHhhc-C---cee-cc
Confidence 3579999995 9999999999999874 36554 444443 1000 11222111 1 122 24
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+..+++++||+||++..... -.+++.+++ .... ++.+||.++||.+
T Consensus 83 ~~~e~~~~aDvVilavp~~~------------~~~~~~~i~---~~~l-~g~ivi~~s~~~~ 128 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGAS------------SIAALTAAG---AENL-AGKILVDIANPLD 128 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGG------------HHHHHHHHC---HHHH-TTSEEEECCCCEE
T ss_pred CHHHHHhcCCEEEEccCcHH------------HHHHHHHhh---hhhc-CCCEEEECCCCCC
Confidence 46788999999999843211 112333331 2333 6789999999974
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00015 Score=75.52 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=70.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHH-----------HHhcccCCCcccEE
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-----------ELEDSLFPLLREVK 161 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~-----------DL~~~~~~~~~~v~ 161 (442)
|++++||+||| +|.||..++..|+..+. +. ++.++ |++.++++.+.. ++.... ....++
T Consensus 2 M~~~mkI~VIG-~G~mG~~lA~~La~~g~-G~--~V~~~----d~~~~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~~ 71 (467)
T 2q3e_A 2 MFEIKKICCIG-AGYVGGPTCSVIAHMCP-EI--RVTVV----DVNESRINAWNSPTLPIYEPGLKEVVESC--RGKNLF 71 (467)
T ss_dssp CCCCCEEEEEC-CSTTHHHHHHHHHHHCT-TS--EEEEE----CSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEE
T ss_pred CCCccEEEEEC-CCHHHHHHHHHHHhcCC-CC--EEEEE----ECCHHHHHHHhCCCCCcCCCCHHHHHHHh--hcCCEE
Confidence 45578999999 59999999999998731 11 35553 445555553211 000000 002456
Q ss_pred EecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe-CCchhH
Q 013466 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (442)
Q Consensus 162 i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv-tNPvd~ 227 (442)
.+++..+++++||+||++...|........+ -.-+...+.+..+.|.++..++.+|+.. |+|...
T Consensus 72 ~t~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~ 137 (467)
T 2q3e_A 72 FSTNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA 137 (467)
T ss_dssp EESCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred EECCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence 6666677899999999987655432110000 0011234555556666654456666655 667654
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=9.1e-05 Score=81.18 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH---HHH-Hhccc-CCC---------cccE
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AME-LEDSL-FPL---------LREV 160 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~---a~D-L~~~~-~~~---------~~~v 160 (442)
+.+||+|||+ |.+|..++..|+..|. +|.++ |++.+.++.. ..+ +.... ... ..++
T Consensus 313 ~i~kV~VIGa-G~MG~~iA~~la~aG~-----~V~l~----D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 382 (715)
T 1wdk_A 313 DVKQAAVLGA-GIMGGGIAYQSASKGT-----PILMK----DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGI 382 (715)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEEE----CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHE
T ss_pred cCCEEEEECC-ChhhHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCe
Confidence 3579999995 9999999999999885 36664 3444444321 111 10000 000 1236
Q ss_pred EEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 161 ~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
+.+++ ++++++||+||.+.. .+..+.+++...+.+++.++++++
T Consensus 383 ~~~~d-~~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Ila 426 (715)
T 1wdk_A 383 RPTLS-YGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAILA 426 (715)
T ss_dssp EEESS-STTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred EEECC-HHHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEEE
Confidence 66554 489999999999843 134556666677788776777664
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=71.15 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh--hHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~--~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
++|||+|||+ |.+|..++..|...|.... .+|.++ +++.+ +++... + . .+.+..+..+++++
T Consensus 21 ~~mkI~iIG~-G~mG~ala~~L~~~G~~~~-~~V~v~----~r~~~~~~~~~l~-~---~------G~~~~~~~~e~~~~ 84 (322)
T 2izz_A 21 QSMSVGFIGA-GQLAFALAKGFTAAGVLAA-HKIMAS----SPDMDLATVSALR-K---M------GVKLTPHNKETVQH 84 (322)
T ss_dssp -CCCEEEESC-SHHHHHHHHHHHHTTSSCG-GGEEEE----CSCTTSHHHHHHH-H---H------TCEEESCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCCc-ceEEEE----CCCccHHHHHHHH-H---c------CCEEeCChHHHhcc
Confidence 3569999995 9999999999999885321 135553 44443 443321 1 1 13455566788899
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
||+||++.. | +.+.++...+.....++.+|+.++|...
T Consensus 85 aDvVilav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 85 SDVLFLAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp CSEEEECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred CCEEEEEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 999999853 1 1244445556555456788888888764
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=65.67 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=61.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||||+|.+|..++..|...+. ++.+. +++.++++....++.... . ..++.. .+..++++++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVVG----SRREEKAEAKAAEYRRIA-G-DASITG-MKNEDAAEACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEEE----ESSHHHHHHHHHHHHHHH-S-SCCEEE-EEHHHHHHHCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhcccc-c-cCCCCh-hhHHHHHhcCCEE
Confidence 5899999679999999999998763 25553 445555544332221100 0 012332 3445778999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|++... +.+.++.+.+.... ++.+++.++|+.+
T Consensus 69 i~~~~~----------------~~~~~~~~~l~~~~-~~~~vi~~~~g~~ 101 (212)
T 1jay_A 69 VLTIPW----------------EHAIDTARDLKNIL-REKIVVSPLVPVS 101 (212)
T ss_dssp EECSCH----------------HHHHHHHHHTHHHH-TTSEEEECCCCEE
T ss_pred EEeCCh----------------hhHHHHHHHHHHHc-CCCEEEEcCCCcC
Confidence 998541 11233333444444 4779999999765
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=73.53 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~eal~ 171 (442)
|+||+|||+ |.+|..++..|+..|. +|.++ +++.++++..........+ .+...+..+.+..++++
T Consensus 15 M~kI~iIG~-G~mG~~la~~L~~~G~-----~V~~~----~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGS-GAFGTALAMVLSKKCR-----EVCVW----HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECC-SHHHHHHHHHHTTTEE-----EEEEE----CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHc
Confidence 349999995 9999999999998763 35553 4455555544332111110 01124566666667899
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHH----HHhhhCC-CeEEEEeCCchh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKA----LNAVASR-NVKVIVVGNPCN 226 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~----I~~~a~p-~a~vivvtNPvd 226 (442)
++|+||++... +.+.++... |..+..+ +.+|+.++|-.+
T Consensus 85 ~aDvVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~ 128 (366)
T 1evy_A 85 GAEIILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 128 (366)
T ss_dssp TCSSEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred CCCEEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence 99999998431 223334443 4443335 678888887653
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00017 Score=71.54 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccchhh-----hHHHHHHHHhcccC----CCcccEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQ-----ALEGVAMELEDSLF----PLLREVKIGI 164 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~--~~~I~L~l~d~d~~~~-----~l~g~a~DL~~~~~----~~~~~v~i~~ 164 (442)
++||+|||+ |.+|..++..|+..+.... ..++.++ +++.+ .++.+..+-....+ .+...+..++
T Consensus 8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~----~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMW----VFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEE----CCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEE----EcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 469999995 9999999999998762110 0125553 33333 44433221110000 0112456666
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+..+++++||+||++... +.+.++.+.|..+..++.+|+.++|-.
T Consensus 83 ~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 83 DVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp SHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred CHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCcc
Confidence 666789999999998431 124455566666555788899888854
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=74.43 Aligned_cols=113 Identities=8% Similarity=-0.009 Sum_probs=68.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEe
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIG 163 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~ 163 (442)
.-.|||+|||+ |.||..++..|+..|. ++.++ |+++++++.+.........+. ..+++.+
T Consensus 6 ~~~~~I~VIG~-G~vG~~lA~~la~~G~-----~V~~~----d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t 75 (478)
T 2y0c_A 6 HGSMNLTIIGS-GSVGLVTGACLADIGH-----DVFCL----DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS 75 (478)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECc-CHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE
Confidence 34689999995 9999999999999874 35553 445555554322110000000 1246777
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++..+++++||+||++...|.+... .. +...+.+.++.|.++..++.+|++.+
T Consensus 76 td~~~a~~~aDvviiaVptp~~~~~-~~-----dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 76 TDIEAAVAHGDVQFIAVGTPPDEDG-SA-----DLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp CCHHHHHHHCSEEEECCCCCBCTTS-SB-----CCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred CCHHHHhhcCCEEEEEeCCCcccCC-Cc-----cHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 7666789999999999776643221 11 22445555566666655667666554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0002 Score=70.18 Aligned_cols=93 Identities=17% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-+||+|||+ |.+|..+|..|+ .|. ++.++ |++.+.++.....+.+. ....++.+++. +++++||+
T Consensus 12 ~~~V~vIG~-G~MG~~iA~~la-aG~-----~V~v~----d~~~~~~~~~~~~l~~~---~~~~i~~~~~~-~~~~~aDl 76 (293)
T 1zej_A 12 HMKVFVIGA-GLMGRGIAIAIA-SKH-----EVVLQ----DVSEKALEAAREQIPEE---LLSKIEFTTTL-EKVKDCDI 76 (293)
T ss_dssp CCEEEEECC-SHHHHHHHHHHH-TTS-----EEEEE----CSCHHHHHHHHHHSCGG---GGGGEEEESSC-TTGGGCSE
T ss_pred CCeEEEEee-CHHHHHHHHHHH-cCC-----EEEEE----ECCHHHHHHHHHHHHHH---HhCCeEEeCCH-HHHcCCCE
Confidence 469999995 999999999999 875 36663 45555555332222111 12346665544 56999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEE
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVI 219 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vi 219 (442)
||.+... +..+-+.+...+..+ |++++.
T Consensus 77 Vieavpe--------------~~~vk~~l~~~l~~~--~~~Ila 104 (293)
T 1zej_A 77 VMEAVFE--------------DLNTKVEVLREVERL--TNAPLC 104 (293)
T ss_dssp EEECCCS--------------CHHHHHHHHHHHHTT--CCSCEE
T ss_pred EEEcCcC--------------CHHHHHHHHHHHhcC--CCCEEE
Confidence 9987431 234444444556664 787774
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=73.42 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=72.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCC-CC--CCceEEEeccccchhhhHHHHHHHHhcccC------CCcccEEEe
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVL-GP--DQPIALKLLGSERSLQALEGVAMELEDSLF------PLLREVKIG 163 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~-~~--~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~------~~~~~v~i~ 163 (442)
..++.||+|||| |.-|.++|..|+..+.- .. +.+|.|+..+.+.+.+.+. ..+.-.|... .+..+++.+
T Consensus 31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~-e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLT-EIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHH-HHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHH-HHHHhcCcCcccCCCCcCCCCcEEe
Confidence 345789999995 99999999999986520 00 0136676555443323222 1111122221 233578888
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+|..+++++||+||++.- .+.++++.+++..+..++..+|.++.
T Consensus 109 ~dl~~al~~ad~ii~avP----------------s~~~r~~l~~l~~~~~~~~~iv~~~K 152 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIP----------------HQFLPRICSQLKGHVDSHVRAISCLK 152 (391)
T ss_dssp SCHHHHHTTCSEEEECSC----------------GGGHHHHHHHHTTTSCTTCEEEECCC
T ss_pred CCHHHHHhcCCEEEEECC----------------hhhhHHHHHHhccccCCCceeEEecc
Confidence 888899999999999733 25577888888877656777777653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.001 Score=64.19 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-CC--cccEEEecCccc---c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PL--LREVKIGINPYE---L 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~~--~~~v~i~~~~~e---a 169 (442)
||||+|||+ |.+|..++..|...|. ++.++ +++.++++....+-..... +. ..++...+ +.+ +
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~~----~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGN-----DVTLI----DQWPAHIEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQ 71 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTT
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCC-----cEEEE----ECCHHHHHHHHhCCEEEEeCCCeeEecceeec-chhhccc
Confidence 579999995 9999999999998774 35553 4555555543221000000 00 00112222 223 3
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
++++|+||++... +.+.++.+.+..+..++.+|+.++|..+.
T Consensus 72 ~~~~d~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 72 NEQVDLIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp SCCCSEEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred CCCCCEEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 4499999998541 22455566666665578899999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0012 Score=61.13 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc-cCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-LFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~-~~~~~~~v~i~~~~~eal~dAD 174 (442)
.+||.|+||+|+||++++..|+..|. .|.+. +++.+.++..... .. . ....++. ....++++++|
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~-----~V~~~----~R~~~~~~~~~~~--~~~~-~~~~Dl~--~~~~~~~~~~D 86 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGH-----EPVAM----VRNEEQGPELRER--GASD-IVVANLE--EDFSHAFASID 86 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGHHHHHHT--TCSE-EEECCTT--SCCGGGGTTCS
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCC-----eEEEE----ECChHHHHHHHhC--CCce-EEEcccH--HHHHHHHcCCC
Confidence 57999999999999999999999874 24442 4454554432210 11 0 0001111 34467899999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||.++|... ..+....+..|..-...+.+.+.+. + ...|++++-
T Consensus 87 ~vi~~ag~~~--~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~iv~~SS 131 (236)
T 3e8x_A 87 AVVFAAGSGP--HTGADKTILIDLWGAIKTIQEAEKR-G-IKRFIMVSS 131 (236)
T ss_dssp EEEECCCCCT--TSCHHHHHHTTTHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred EEEECCCCCC--CCCccccchhhHHHHHHHHHHHHHc-C-CCEEEEEec
Confidence 9999988543 2344556777887788888888775 2 346666664
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.001 Score=63.72 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-CCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dAD 174 (442)
|+||+|||+ |.+|..++..|...|. . ..|.++ |++.++++.. .++ .. ......+..++++ +||
T Consensus 1 m~~I~iIG~-G~mG~~~a~~l~~~g~-~--~~V~~~----d~~~~~~~~~-~~~-----g~--~~~~~~~~~~~~~~~aD 64 (281)
T 2g5c_A 1 MQNVLIVGV-GFMGGSFAKSLRRSGF-K--GKIYGY----DINPESISKA-VDL-----GI--IDEGTTSIAKVEDFSPD 64 (281)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTC-C--SEEEEE----CSCHHHHHHH-HHT-----TS--CSEEESCGGGGGGTCCS
T ss_pred CcEEEEEec-CHHHHHHHHHHHhcCC-C--cEEEEE----eCCHHHHHHH-HHC-----CC--cccccCCHHHHhcCCCC
Confidence 469999995 9999999999998774 1 125442 4555554422 211 11 1123345567888 999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+||++... +.+.++...+..+..++++|+.++|.
T Consensus 65 vVilavp~----------------~~~~~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 65 FVMLSSPV----------------RTFREIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 99998541 12233444444444567788777763
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00093 Score=64.44 Aligned_cols=94 Identities=12% Similarity=0.190 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||++|.+|..++..|...|. +|.++ |++.++++... +. . +.. .+..+++++||+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~-----~V~~~----~r~~~~~~~~~-~~-----g----~~~-~~~~~~~~~aDv 70 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH-----HLAAI----EIAPEGRDRLQ-GM-----G----IPL-TDGDGWIDEADV 70 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS-----EEEEE----CCSHHHHHHHH-HT-----T----CCC-CCSSGGGGTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEEE----ECCHHHHHHHH-hc-----C----CCc-CCHHHHhcCCCE
Confidence 46999999449999999999998874 25542 55555554332 11 1 111 246678999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++... +.+.++.+.+..+..++.+|+..++-.
T Consensus 71 Vi~av~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 71 VVLALPD----------------NIIEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp EEECSCH----------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred EEEcCCc----------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 9998441 124556666666555678888777754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00069 Score=66.80 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccc-ccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-LFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~e-al~dAD 174 (442)
++||+||| +|.+|..++..|...|.. ..|.++ |++.+.++. +.++. . ......+..+ ++++||
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G~~---~~V~~~----dr~~~~~~~-a~~~G-----~--~~~~~~~~~~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSGFK---GKIYGY----DINPESISK-AVDLG-----I--IDEGTTSIAKVEDFSPD 96 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTTCC---SEEEEE----CSCHHHHHH-HHHTT-----S--CSEEESCTTGGGGGCCS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCCCC---CEEEEE----ECCHHHHHH-HHHCC-----C--cchhcCCHHHHhhccCC
Confidence 36999999 599999999999998862 135553 555555442 22221 1 0123455566 799999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||++.... .+.++.+.+..+..++++|+.++.
T Consensus 97 vVilavp~~----------------~~~~vl~~l~~~l~~~~iv~d~~S 129 (314)
T 3ggo_A 97 FVMLSSPVR----------------TFREIAKKLSYILSEDATVTDQGS 129 (314)
T ss_dssp EEEECSCGG----------------GHHHHHHHHHHHSCTTCEEEECCS
T ss_pred EEEEeCCHH----------------HHHHHHHHHhhccCCCcEEEECCC
Confidence 999984311 123333444444457777776653
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0012 Score=63.62 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|||+ |.+|..++..|...+. + ..|.+ + |++.++++.. .+. ... .....+..+++++||
T Consensus 5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~-~--~~V~~--~--d~~~~~~~~~-~~~-----g~~--~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 5 EEKTIYIAGL-GLIGASLALGIKRDHP-H--YKIVG--Y--NRSDRSRDIA-LER-----GIV--DEATADFKVFAALAD 68 (290)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCT-T--SEEEE--E--CSSHHHHHHH-HHT-----TSC--SEEESCTTTTGGGCS
T ss_pred ccceEEEEee-CHHHHHHHHHHHhCCC-C--cEEEE--E--cCCHHHHHHH-HHc-----CCc--ccccCCHHHhhcCCC
Confidence 3579999995 9999999999998752 1 12444 2 4555554422 111 110 133445567889999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh-hCCCeEEEEeCCc
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGNP 224 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~-a~p~a~vivvtNP 224 (442)
+||++... +.+.++.+.+..+ ..++.+|+.++|-
T Consensus 69 vVilavp~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 69 VIILAVPI----------------KKTIDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred EEEEcCCH----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence 99998541 2235555666654 4567788777764
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00095 Score=65.67 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=65.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC---CcccEEEecCccccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP---LLREVKIGINPYELF 170 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~---~~~~v~i~~~~~eal 170 (442)
..++||+|||| |.+|..++..|+..|. ++.+. . +.+.++....+=.....+ +...+..++ +.+++
T Consensus 17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~-----~V~l~-~----~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 84 (318)
T 3hwr_A 17 FQGMKVAIMGA-GAVGCYYGGMLARAGH-----EVILI-A----RPQHVQAIEATGLRLETQSFDEQVKVSASS-DPSAV 84 (318)
T ss_dssp ---CEEEEESC-SHHHHHHHHHHHHTTC-----EEEEE-C----CHHHHHHHHHHCEEEECSSCEEEECCEEES-CGGGG
T ss_pred ccCCcEEEECc-CHHHHHHHHHHHHCCC-----eEEEE-E----cHhHHHHHHhCCeEEEcCCCcEEEeeeeeC-CHHHc
Confidence 34689999995 9999999999999874 36664 2 223444332210001001 011233443 45668
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
+++|+||++.... -+.++.+.|..+..++.+|+.++|..+...
T Consensus 85 ~~~D~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~ 127 (318)
T 3hwr_A 85 QGADLVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENAD 127 (318)
T ss_dssp TTCSEEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred CCCCEEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence 9999999984311 135555666666567889999999987654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00047 Score=67.94 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=48.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+++||+|||+ |.+|..++..|+..|. +|.++ |++.++++.. .+. .+....+..+++++|
T Consensus 29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~-----~V~~~----dr~~~~~~~l----~~~------g~~~~~~~~e~~~~a 88 (320)
T 4dll_A 29 PYARKITFLGT-GSMGLPMARRLCEAGY-----ALQVW----NRTPARAASL----AAL------GATIHEQARAAARDA 88 (320)
T ss_dssp CCCSEEEEECC-TTTHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHH----HTT------TCEEESSHHHHHTTC
T ss_pred cCCCEEEEECc-cHHHHHHHHHHHhCCC-----eEEEE----cCCHHHHHHH----HHC------CCEeeCCHHHHHhcC
Confidence 34679999995 9999999999999874 35553 5555555433 211 235556677889999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||++..
T Consensus 89 DvVi~~vp 96 (320)
T 4dll_A 89 DIVVSMLE 96 (320)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 99999854
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00032 Score=63.88 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||.|+||+|.||++++..|+..|. .|.+. +++.+.+... .... .. ....+.....+++.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~R~~~~~~~~----~~~~-~~-~~~D~~d~~~~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH-----EVTAI----VRNAGKITQT----HKDI-NI-LQKDIFDLTLSDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCSHHHHHH----CSSS-EE-EECCGGGCCHHHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC-----EEEEE----EcCchhhhhc----cCCC-eE-EeccccChhhhhhcCCCEE
Confidence 5899999999999999999999873 24442 4444444322 1000 00 0000111111688999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|.++|.+... ...|....+.+.+.+.+. ....+++++-
T Consensus 66 i~~ag~~~~~-------~~~~~~~~~~l~~a~~~~--~~~~~v~~SS 103 (221)
T 3ew7_A 66 VDAYGISPDE-------AEKHVTSLDHLISVLNGT--VSPRLLVVGG 103 (221)
T ss_dssp EECCCSSTTT-------TTSHHHHHHHHHHHHCSC--CSSEEEEECC
T ss_pred EECCcCCccc-------cchHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 9999875321 233667777788777763 2456666664
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0012 Score=63.17 Aligned_cols=93 Identities=16% Similarity=0.102 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|||+ |.+|..++..|.. +. ++.++ |++.++++..... . +.... ..++++++|+
T Consensus 1 M~~i~iiG~-G~~G~~~a~~l~~-g~-----~V~~~----~~~~~~~~~~~~~---g-------~~~~~-~~~~~~~~D~ 58 (289)
T 2cvz_A 1 MEKVAFIGL-GAMGYPMAGHLAR-RF-----PTLVW----NRTFEKALRHQEE---F-------GSEAV-PLERVAEARV 58 (289)
T ss_dssp -CCEEEECC-STTHHHHHHHHHT-TS-----CEEEE----CSSTHHHHHHHHH---H-------CCEEC-CGGGGGGCSE
T ss_pred CCeEEEEcc-cHHHHHHHHHHhC-CC-----eEEEE----eCCHHHHHHHHHC---C-------CcccC-HHHHHhCCCE
Confidence 468999995 9999999999998 64 26553 4455555433221 1 11223 5677899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
||++...+ ..+.++.+.+.....++.+|+..+|..
T Consensus 59 vi~~v~~~---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~ 93 (289)
T 2cvz_A 59 IFTCLPTT---------------REVYEVAEALYPYLREGTYWVDATSGE 93 (289)
T ss_dssp EEECCSSH---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred EEEeCCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 99985421 113334445554444678888888754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0013 Score=60.70 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
.++||+|||+ |.+|..++..|...+. ++.++ |++++ ++++||
T Consensus 18 ~~~~I~iiG~-G~mG~~la~~l~~~g~-----~V~~~----~~~~~----------------------------~~~~aD 59 (209)
T 2raf_A 18 QGMEITIFGK-GNMGQAIGHNFEIAGH-----EVTYY----GSKDQ----------------------------ATTLGE 59 (209)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CTTCC----------------------------CSSCCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----cCCHH----------------------------HhccCC
Confidence 3579999995 9999999999998773 25553 33222 678999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+||++.. + +.++++.+.+..+.. +.+++.++|+.+
T Consensus 60 ~vi~av~-~---------------~~~~~v~~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 60 IVIMAVP-Y---------------PALAALAKQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp EEEECSC-H---------------HHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred EEEEcCC-c---------------HHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence 9999844 1 223444445554443 779999999665
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00035 Score=68.49 Aligned_cols=69 Identities=12% Similarity=0.281 Sum_probs=49.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
..+|+||+|||+ |.+|..++..|+..|. ++.++ |++.++++.... . .+....+..+++++
T Consensus 18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~-----~V~~~----dr~~~~~~~l~~-~---------g~~~~~~~~~~~~~ 77 (310)
T 3doj_A 18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGF-----KVTVW----NRTLSKCDELVE-H---------GASVCESPAEVIKK 77 (310)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSSGGGGHHHHH-T---------TCEECSSHHHHHHH
T ss_pred cccCCEEEEECc-cHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHH-C---------CCeEcCCHHHHHHh
Confidence 345789999995 9999999999999874 35553 555566554321 1 13445566788999
Q ss_pred CcEEEEeCC
Q 013466 173 AEWALLIGA 181 (442)
Q Consensus 173 ADiVIi~ag 181 (442)
||+||++..
T Consensus 78 aDvvi~~vp 86 (310)
T 3doj_A 78 CKYTIAMLS 86 (310)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEEcC
Confidence 999999854
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00041 Score=67.01 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||+ |.+|..++..|+..|. ++.++ |++.++++.... . .+....+..+++++||+|
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~-----~V~~~----dr~~~~~~~~~~----~------g~~~~~~~~~~~~~aDvv 61 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGC-----SVTIW----NRSPEKAEELAA----L------GAERAATPCEVVESCPVT 61 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSSGGGGHHHHH----T------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHHHH----C------CCeecCCHHHHHhcCCEE
Confidence 69999995 9999999999999874 35553 555565553321 1 234555667888999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHH---HHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~---~~I~~~a~p~a~vivvtN 223 (442)
|++...+ +.++++. +.+.....++.+|+..++
T Consensus 62 i~~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 62 FAMLADP---------------AAAEEVCFGKHGVLEGIGEGRGYVDMST 96 (287)
T ss_dssp EECCSSH---------------HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred EEEcCCH---------------HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence 9984411 2233343 344444446677777765
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00051 Score=62.87 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=63.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC----cccccC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN----PYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~----~~eal~ 171 (442)
|||.|+||+|.||++++..|+..|. .|.+. +++.+.+.. +... .+.+ ..| ..+++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~-----~V~~~----~R~~~~~~~----~~~~------~~~~~~~D~~d~~~~~~~ 61 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH-----EVLAV----VRDPQKAAD----RLGA------TVATLVKEPLVLTEADLD 61 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHH----HTCT------TSEEEECCGGGCCHHHHT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC-----EEEEE----Eeccccccc----ccCC------CceEEecccccccHhhcc
Confidence 5899999999999999999999874 24442 444444332 2111 1111 111 116789
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++|+||.++|....+.. ...|....+.+.+.+.+. . ..+++++
T Consensus 62 ~~d~vi~~ag~~~~~~~-----~~~n~~~~~~l~~a~~~~--~-~~~v~~S 104 (224)
T 3h2s_A 62 SVDAVVDALSVPWGSGR-----GYLHLDFATHLVSLLRNS--D-TLAVFIL 104 (224)
T ss_dssp TCSEEEECCCCCTTSSC-----THHHHHHHHHHHHTCTTC--C-CEEEEEC
T ss_pred cCCEEEECCccCCCcch-----hhHHHHHHHHHHHHHHHc--C-CcEEEEe
Confidence 99999999886532222 345777788888877763 2 6677765
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00039 Score=67.20 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+||| +|.+|..++..|+..|. ++.++ |++.++++..... .+....+..+++++||+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-----~V~~~----dr~~~~~~~~~~~----------g~~~~~~~~~~~~~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-----DVTVW----NRNPAKCAPLVAL----------GARQASSPAEVCAACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-----CEEEE----CSSGGGGHHHHHH----------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHHHHC----------CCeecCCHHHHHHcCCE
Confidence 56999999 59999999999999874 36553 5555655533221 13444566788899999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||++..
T Consensus 61 vi~~v~ 66 (287)
T 3pdu_A 61 TIAMLA 66 (287)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 999844
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00051 Score=66.42 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|||+ |.+|..++..|...+. ++.++ |++.++++.. .+. .+....+..+.++++|
T Consensus 3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~~----~~~~~~~~~~----~~~------g~~~~~~~~~~~~~~D 62 (301)
T 3cky_A 3 KSIKIGFIGL-GAMGKPMAINLLKEGV-----TVYAF----DLMEANVAAV----VAQ------GAQACENNQKVAAASD 62 (301)
T ss_dssp -CCEEEEECC-CTTHHHHHHHHHHTTC-----EEEEE----CSSHHHHHHH----HTT------TCEECSSHHHHHHHCS
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHH----HHC------CCeecCCHHHHHhCCC
Confidence 4579999995 9999999999998764 25542 5555554432 211 1334455567788999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHH---HHHhhhCCCeEEEEeCCch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGK---ALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~---~I~~~a~p~a~vivvtNPv 225 (442)
+||++...+ ..++++.. .+.....++.+|+..+|-.
T Consensus 63 ~vi~~vp~~---------------~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 63 IIFTSLPNA---------------GIVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp EEEECCSSH---------------HHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred EEEEECCCH---------------HHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 999985321 11223331 3333334677888877754
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00061 Score=66.41 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|||+ |.+|..++..|+..|. ++.++ |++.++++.... . .. .....+..+++++||
T Consensus 6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~-----~V~~~----dr~~~~~~~~~~----~--g~---~~~~~~~~e~~~~aD 66 (303)
T 3g0o_A 6 TDFHVGIVGL-GSMGMGAARSCLRAGL-----STWGA----DLNPQACANLLA----E--GA---CGAAASAREFAGVVD 66 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHH----T--TC---SEEESSSTTTTTTCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHHHH----c--CC---ccccCCHHHHHhcCC
Confidence 3579999995 9999999999999874 35553 555555553321 1 11 112466778899999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 67 vvi~~vp 73 (303)
T 3g0o_A 67 ALVILVV 73 (303)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999844
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00073 Score=69.96 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC----------CcccEEEec
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGI 164 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~----------~~~~v~i~~ 164 (442)
-..+|+||| +|.+|..++..|+..|. ++.++ |+++++++.+........-+ ...+++.++
T Consensus 7 ~~~~~~vIG-lG~vG~~~A~~La~~G~-----~V~~~----D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~tt 76 (446)
T 4a7p_A 7 GSVRIAMIG-TGYVGLVSGACFSDFGH-----EVVCV----DKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTT 76 (446)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEEE----CSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred CceEEEEEc-CCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEEC
Confidence 367999999 59999999999999874 35553 44455555432210000000 012467777
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+..+++++||+||++.+.|...+..+.| ...+++.++.|.++..++.+|+..|
T Consensus 77 d~~ea~~~aDvvii~Vptp~~~~~~~~D-----l~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 77 DLAEGVKDADAVFIAVGTPSRRGDGHAD-----LSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp CHHHHHTTCSEEEECCCCCBCTTTCCBC-----THHHHHHHHHHHHSCCSCCEEEECS
T ss_pred CHHHHHhcCCEEEEEcCCCCccccCCcc-----HHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 7778999999999997776543211222 2345555566666554566665554
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00084 Score=65.92 Aligned_cols=85 Identities=9% Similarity=-0.060 Sum_probs=44.7
Q ss_pred cceeeEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhhHHHHHHHHhc
Q 013466 74 CYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELED 151 (442)
Q Consensus 74 ~~~v~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~--~~~l~g~a~DL~~ 151 (442)
.+|+|+-.+++.. .+..+++||+|||+ |.+|..++..|+..|. .+|.++ |++ .++.+.. ..
T Consensus 6 ~~~~~~~~~~~~~----~~~~~~~~I~iIG~-G~mG~~~A~~L~~~G~----~~V~~~----dr~~~~~~~~~~----~~ 68 (312)
T 3qsg_A 6 HHSSGVDLGTENL----YFQSNAMKLGFIGF-GEAASAIASGLRQAGA----IDMAAY----DAASAESWRPRA----EE 68 (312)
T ss_dssp -----------------------CEEEEECC-SHHHHHHHHHHHHHSC----CEEEEE----CSSCHHHHHHHH----HH
T ss_pred ccccccccCcccc----cccCCCCEEEEECc-cHHHHHHHHHHHHCCC----CeEEEE----cCCCCHHHHHHH----HH
Confidence 3456665555432 12234689999995 9999999999999874 135553 332 2333311 11
Q ss_pred ccCCCcccEEEecCcccccCCCcEEEEeCC
Q 013466 152 SLFPLLREVKIGINPYELFEDAEWALLIGA 181 (442)
Q Consensus 152 ~~~~~~~~v~i~~~~~eal~dADiVIi~ag 181 (442)
. .+....+..+++++||+||++..
T Consensus 69 ~------g~~~~~~~~e~~~~aDvVi~~vp 92 (312)
T 3qsg_A 69 L------GVSCKASVAEVAGECDVIFSLVT 92 (312)
T ss_dssp T------TCEECSCHHHHHHHCSEEEECSC
T ss_pred C------CCEEeCCHHHHHhcCCEEEEecC
Confidence 1 13444566788999999999854
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00084 Score=66.36 Aligned_cols=103 Identities=14% Similarity=0.012 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh-ccc-CCCc--ccE-EEecCcccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-DSL-FPLL--REV-KIGINPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~-~~~-~~~~--~~v-~i~~~~~ea 169 (442)
+++||+|||+ |.+|..++..|...+. ++.++ +++.++++....... ... .... .++ ....+..++
T Consensus 3 ~~mki~iiG~-G~~G~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (359)
T 1bg6_A 3 ESKTYAVLGL-GNGGHAFAAYLALKGQ-----SVLAW----DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA 72 (359)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH
Confidence 3579999995 9999999999998773 35553 455555554432210 000 0000 112 234444566
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++|+||++..... ..++.+.+..+..++.+|+...|
T Consensus 73 ~~~~D~vi~~v~~~~----------------~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 73 VKDADVILIVVPAIH----------------HASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp HTTCSEEEECSCGGG----------------HHHHHHHHGGGCCTTCEEEESSC
T ss_pred HhcCCEEEEeCCchH----------------HHHHHHHHHHhCCCCCEEEEcCC
Confidence 899999999854211 13444555555556777766644
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=71.11 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH-HhcccCC---CcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFP---LLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D-L~~~~~~---~~~~v~i~~~~~eal~ 171 (442)
++||+|||+ |.+|..++..|...|. ++.+. +++ +.++..... +. ...+ +..++..+ ++.++++
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~-----~V~~~----~r~-~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~ 69 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGE-----AINVL----ARG-ATLQALQTAGLR-LTEDGATHTLPVRAT-HDAAALG 69 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTC-----CEEEE----CCH-HHHHHHHHTCEE-EEETTEEEEECCEEE-SCHHHHC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC-----EEEEE----ECh-HHHHHHHHCCCE-EecCCCeEEEeeeEE-CCHHHcC
Confidence 579999995 9999999999999874 36663 333 233322110 00 0000 00122333 3455679
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++|+||++.. .+.+.++.+.|..+.+++..|+.+.|..
T Consensus 70 ~~D~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 70 EQDVVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CCSEEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCCEEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 9999999854 1235566666666556788999999995
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0024 Score=61.04 Aligned_cols=92 Identities=22% Similarity=0.141 Sum_probs=58.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+. +|.++ |++.++++.. .+. .. ......+..+. +++|+|
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~~----~~~~~~~~~~-~~~-----g~--~~~~~~~~~~~-~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVGL-GLIGASLAGDLRRRGH-----YLIGV----SRQQSTCEKA-VER-----QL--VDEAGQDLSLL-QTAKII 61 (279)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHH-HHT-----TS--CSEEESCGGGG-TTCSEE
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHH-HhC-----CC--CccccCCHHHh-CCCCEE
Confidence 58999995 9999999999998774 25553 5555555432 111 11 11234445556 999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++... +.+.++.+.+..+..++.+|+.++|
T Consensus 62 i~av~~----------------~~~~~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 62 FLCTPI----------------QLILPTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp EECSCH----------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred EEECCH----------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence 998541 2345555666665556788877755
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00082 Score=65.38 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+||| +|.+|..++..|+..|. ++.++ |++.++++.... . .++...+..++++ ||+
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~-----~V~~~----dr~~~~~~~~~~----~------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPG-----GVTVY----DIRIEAMTPLAE----A------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTT-----CEEEE----CSSTTTSHHHHH----T------TCEECSSHHHHTT-SSE
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHH----C------CCEEcCCHHHHHh-CCE
Confidence 46999999 59999999999998874 36564 445555543321 1 2344455667777 999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||++...+ +.++++.+.+.....++.+|+..++
T Consensus 74 vi~~vp~~---------------~~~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 74 IHITVLDD---------------AQVREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp EEECCSSH---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred EEEECCCh---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 99984421 2234444555554446677777665
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00078 Score=66.02 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhhHHHHHHHHhcccC--CCcccEEEec--Cccccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLF--PLLREVKIGI--NPYELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~--~~~~l~g~a~DL~~~~~--~~~~~v~i~~--~~~eal 170 (442)
|||+|||+ |.+|..++..|...|. ++.++ ++ +.++++....+-.+..+ .+ .++..+. +..+++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 69 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRIW----GTEFDTEILKSISAGREHPRLGVKL-NGVEIFWPEQLEKCL 69 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEEE----CCGGGHHHHHHHHTTCCBTTTTBCC-CSEEEECGGGHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----EccCCHHHHHHHHHhCcCcccCccc-cceEEecHHhHHHHH
Confidence 58999995 9999999999998773 35553 44 44555433221100000 00 2235544 445678
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+++|+||++...+ .+.++...+.. ..++.+|+.++|-.
T Consensus 70 ~~~D~vi~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 70 ENAEVVLLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp TTCSEEEECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred hcCCEEEEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 9999999985421 12333444444 35678888888866
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=60.80 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=63.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------c
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------P 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~ 166 (442)
.+|+||.|+||+|.||++++..|+..|. .|.+. +++.+.+... ...+.+... .
T Consensus 2 ~~m~~ilItGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~-----------~~~~~~~~~Dl~d~~~~ 61 (227)
T 3dhn_A 2 EKVKKIVLIGASGFVGSALLNEALNRGF-----EVTAV----VRHPEKIKIE-----------NEHLKVKKADVSSLDEV 61 (227)
T ss_dssp -CCCEEEEETCCHHHHHHHHHHHHTTTC-----EEEEE----CSCGGGCCCC-----------CTTEEEECCCTTCHHHH
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-----EEEEE----EcCcccchhc-----------cCceEEEEecCCCHHHH
Confidence 3468999999999999999999999873 24442 3333332110 012332221 2
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.++++++|+||.++|... +..+++..|......+.+.+.+. +. ..++.++
T Consensus 62 ~~~~~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~-~~-~~~v~~S 111 (227)
T 3dhn_A 62 CEVCKGADAVISAFNPGW----NNPDIYDETIKVYLTIIDGVKKA-GV-NRFLMVG 111 (227)
T ss_dssp HHHHTTCSEEEECCCC----------CCSHHHHHHHHHHHHHHHT-TC-SEEEEEC
T ss_pred HHHhcCCCEEEEeCcCCC----CChhHHHHHHHHHHHHHHHHHHh-CC-CEEEEeC
Confidence 356889999999987432 22235666888888888888874 33 2555555
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0003 Score=66.73 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+ |.+|..++..|...+.+.. .++.++ |++.++ . .+.+..+..++++++|+
T Consensus 4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~-~~v~~~----~~~~~~------------~----g~~~~~~~~~~~~~~D~ 61 (262)
T 2rcy_A 4 NIKLGFMGL-GQMGSALAHGIANANIIKK-ENLFYY----GPSKKN------------T----TLNYMSSNEELARHCDI 61 (262)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHHTSSCG-GGEEEE----CSSCCS------------S----SSEECSCHHHHHHHCSE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCCCC-CeEEEE----eCCccc------------C----ceEEeCCHHHHHhcCCE
Confidence 469999995 9999999999998774211 136553 333333 0 12344455678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
||++.. +. .+.++.+.+..+. ++..++..+|.++.
T Consensus 62 vi~~v~-~~---------------~~~~v~~~l~~~l-~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 62 IVCAVK-PD---------------IAGSVLNNIKPYL-SSKLLISICGGLNI 96 (262)
T ss_dssp EEECSC-TT---------------THHHHHHHSGGGC-TTCEEEECCSSCCH
T ss_pred EEEEeC-HH---------------HHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 999844 11 1344455566654 67788888888765
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=68.10 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-CCCcccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-~~~~~~v~i~~~~~eal~dADi 175 (442)
|||+|||+ |.+|..++..|...|. ++.++ +++.++++. +.... ........+..++.++++++|+
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~~----~r~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQGW----LRVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDL 66 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSE
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC-----CEEEE----EcCccceee----EEEEcCCCceeeeeeeecCccccCCCCE
Confidence 58999995 9999999999998774 35554 333333221 21110 0000012233345678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
||++..... +.++.+.+..+..++.+|+.++|..+.
T Consensus 67 vi~~v~~~~----------------~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 67 LLVTLKAWQ----------------VSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp EEECSCGGG----------------HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred EEEEecHHh----------------HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 999854211 244445555555568888888998744
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0023 Score=60.47 Aligned_cols=66 Identities=21% Similarity=0.174 Sum_probs=44.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+. . ++.++ |++.++++.....+ .+....+..+++ ++|+|
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~--~--~v~~~----~r~~~~~~~~~~~~---------g~~~~~~~~~~~-~~D~v 61 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGG--Y--RIYIA----NRGAEKRERLEKEL---------GVETSATLPELH-SDDVL 61 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS--C--EEEEE----CSSHHHHHHHHHHT---------CCEEESSCCCCC-TTSEE
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC--C--eEEEE----CCCHHHHHHHHHhc---------CCEEeCCHHHHh-cCCEE
Confidence 58999995 9999999999998773 1 25553 55556555443221 133445556778 99999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 62 i~~v~ 66 (263)
T 1yqg_A 62 ILAVK 66 (263)
T ss_dssp EECSC
T ss_pred EEEeC
Confidence 99843
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00095 Score=65.95 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dAD 174 (442)
++||+|||+ |.+|..++..|+..|. +|.++ +++.++++.+..+-.....+. ...+....+..+ ++++|
T Consensus 14 ~~kI~iIG~-G~mG~ala~~L~~~G~-----~V~~~----~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aD 82 (335)
T 1z82_A 14 EMRFFVLGA-GSWGTVFAQMLHENGE-----EVILW----ARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKED 82 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred CCcEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence 579999995 9999999999998773 36553 455555554433211000000 002455555556 89999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+||++... +.+.++...+.. ++..+|.++|..
T Consensus 83 vVil~vk~----------------~~~~~v~~~l~~---~~~~vv~~~nGi 114 (335)
T 1z82_A 83 ILVIAIPV----------------QYIREHLLRLPV---KPSMVLNLSKGI 114 (335)
T ss_dssp EEEECSCG----------------GGHHHHHTTCSS---CCSEEEECCCCC
T ss_pred EEEEECCH----------------HHHHHHHHHhCc---CCCEEEEEeCCC
Confidence 99998431 123333333322 567888888864
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00087 Score=64.72 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=58.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+. ++.++ |++.++++.... . .+....+..++++++|+|
T Consensus 6 m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~~----~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIGL-GIMGKPMSKNLLKAGY-----SLVVS----DRNPEAIADVIA----A------GAETASTAKAIAEQCDVI 65 (299)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHH----T------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEECc-hHHHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHH----C------CCeecCCHHHHHhCCCEE
Confidence 69999995 9999999999998763 25442 455555543321 1 123444556778899999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHH---HHHHhhhCCCeEEEEeCCch
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQG---KALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~---~~I~~~a~p~a~vivvtNPv 225 (442)
|++...+ ..++++. +.+.....++.+|+..+|-.
T Consensus 66 i~~v~~~---------------~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 66 ITMLPNS---------------PHVKEVALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp EECCSSH---------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred EEECCCH---------------HHHHHHHhCcchHhhcCCCCCEEEECCCCC
Confidence 9985421 1122333 23333334677888887653
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0016 Score=67.91 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC--
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED-- 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d-- 172 (442)
.++||+|||+ |.+|..++..|+..|. +|.++ |++.++++....+.. . ..+..+.+..+++++
T Consensus 14 ~~~~IgvIGl-G~MG~~lA~~La~~G~-----~V~v~----~r~~~~~~~l~~~~~----~--~gi~~~~s~~e~v~~l~ 77 (480)
T 2zyd_A 14 SKQQIGVVGM-AVMGRNLALNIESRGY-----TVSIF----NRSREKTEEVIAENP----G--KKLVPYYTVKEFVESLE 77 (480)
T ss_dssp -CBSEEEECC-SHHHHHHHHHHHTTTC-----CEEEE----CSSHHHHHHHHHHST----T--SCEEECSSHHHHHHTBC
T ss_pred CCCeEEEEcc-HHHHHHHHHHHHhCCC-----eEEEE----eCCHHHHHHHHhhCC----C--CCeEEeCCHHHHHhCCC
Confidence 3568999995 9999999999998874 36663 555566554433221 0 134555555566666
Q ss_pred -CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 173 -AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 173 -ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+|+||++...+ +.++++.+.+..+..++.+||..+|-..
T Consensus 78 ~aDvVil~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~g~~ 117 (480)
T 2zyd_A 78 TPRRILLMVKAG---------------AGTDAAIDSLKPYLDKGDIIIDGGNTFF 117 (480)
T ss_dssp SSCEEEECSCSS---------------SHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred CCCEEEEECCCH---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 99999974321 1234444555555556788888998763
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00044 Score=63.51 Aligned_cols=94 Identities=26% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCE-EEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhh-hHHHHHHHHhcccCCCcccEEEe-cC------
Q 013466 96 MVN-IAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKIG-IN------ 165 (442)
Q Consensus 96 ~~K-I~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~-~l~g~a~DL~~~~~~~~~~v~i~-~~------ 165 (442)
|+| |.|+||+|+||.+++..|+ ..|. .|.+. +++.+ +++..+. . . . ++.+. .|
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~-----~V~~~----~r~~~~~~~~~~~--~--~-~---~~~~~~~D~~d~~~ 66 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDM-----HITLY----GRQLKTRIPPEII--D--H-E---RVTVIEGSFQNPGX 66 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCC-----EEEEE----ESSHHHHSCHHHH--T--S-T---TEEEEECCTTCHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCc-----eEEEE----ecCccccchhhcc--C--C-C---ceEEEECCCCCHHH
Confidence 445 9999999999999999999 7664 24442 44444 4332220 1 0 1 12221 11
Q ss_pred cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 166 ~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
..++++++|+||.++|.. |.. .+.+.+.+.+. + ...||+++
T Consensus 67 ~~~~~~~~d~vv~~ag~~-------------n~~-~~~~~~~~~~~-~-~~~iv~iS 107 (221)
T 3r6d_A 67 LEQAVTNAEVVFVGAMES-------------GSD-MASIVKALSRX-N-IRRVIGVS 107 (221)
T ss_dssp HHHHHTTCSEEEESCCCC-------------HHH-HHHHHHHHHHT-T-CCEEEEEE
T ss_pred HHHHHcCCCEEEEcCCCC-------------Chh-HHHHHHHHHhc-C-CCeEEEEe
Confidence 135678999999998743 333 66777777764 2 34555555
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0096 Score=57.60 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--c------Cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I------NP 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~------~~ 166 (442)
+.++|.|+||+|.||++++..|+..|. .|.+. +++.+..+.....+.+.. + .++.+. . ..
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~ 77 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGY-----KVRGT----ARSASKLANLQKRWDAKY-P--GRFETAVVEDMLKQGAY 77 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHHHHS-T--TTEEEEECSCTTSTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----EEEEE----eCCcccHHHHHHHhhccC-C--CceEEEEecCCcChHHH
Confidence 346999999999999999999998774 24432 333333332222221110 0 122221 1 12
Q ss_pred ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++++|+||.+++.... +.+..+.+..|..-...+.+.+.+.. ....|++++-
T Consensus 78 ~~~~~~~d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~-~~~~iv~~SS 132 (342)
T 1y1p_A 78 DEVIKGAAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATP-SVKRFVLTSS 132 (342)
T ss_dssp TTTTTTCSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCT-TCCEEEEECC
T ss_pred HHHHcCCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCC-CCcEEEEecc
Confidence 3456789999999885432 23455677888888888888776422 2356666664
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0043 Score=64.59 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--- 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--- 172 (442)
++||+|||+ |.+|..++..|+..|. +|.++ |++.++++....+.. . ..+..+.+..+.+++
T Consensus 5 ~~~IgvIG~-G~mG~~lA~~L~~~G~-----~V~v~----dr~~~~~~~l~~~~~----~--~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 5 QANFGVVGM-AVMGKNLALNVESRGY-----TVAIY----NRTTSKTEEVFKEHQ----D--KNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp TBSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CSSHHHHHHHHHHTT----T--SCEEECSSHHHHHHTBCS
T ss_pred CCcEEEEee-HHHHHHHHHHHHhCCC-----EEEEE----cCCHHHHHHHHHhCc----C--CCeEEeCCHHHHHhhccC
Confidence 468999995 9999999999998874 26553 555566654433221 0 134454555555555
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
+|+||++...+ +.+.++.+.+..+..++.+||..+|-...
T Consensus 69 aDvVilavp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~ 108 (474)
T 2iz1_A 69 PRRIMLMVQAG---------------AATDATIKSLLPLLDIGDILIDGGNTHFP 108 (474)
T ss_dssp SCEEEECCCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred CCEEEEEccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCHH
Confidence 99999974311 22344445555555567788888886533
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00077 Score=70.66 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
+|||.|+||+|.||++++..|+..|. .|... +++....+.+..|+ .....++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-----~V~~l----~R~~~~~~~v~~d~-------------~~~~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-----EVIQL----VRKEPKPGKRFWDP-------------LNPASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESSSCCTTCEECCT-------------TSCCTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCCCCccceeecc-------------cchhHHhcCCCCE
Confidence 78999999999999999999999874 24332 33322221111111 1123577899999
Q ss_pred EEEeCCcCCCC---CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kp---g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||.+++..... .....+++..|+.-...+++.+.+.. .-..||.+|
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~-~~~r~V~~S 253 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAEST-QCTTMISAS 253 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCS-SCCEEEEEE
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeC
Confidence 99998864321 12345567888888888888755532 223555555
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00047 Score=67.56 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=65.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh--HHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~--l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
.+++||.|+||+|.||++++..|+..|. .|... +++... ++-+..|+.+. ....++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~Dl~d~-----------~~~~~~~~ 76 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGR-----TVRGF----DLRPSGTGGEEVVGSLEDG-----------QALSDAIM 76 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC-----CEEEE----ESSCCSSCCSEEESCTTCH-----------HHHHHHHT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-----EEEEE----eCCCCCCCccEEecCcCCH-----------HHHHHHHh
Confidence 3457999999999999999999999874 24442 222221 00000111100 11245678
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+++..........+.+..|+.-...+.+.+.+. +. ..||.+|-
T Consensus 77 ~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~-~~~V~~SS 126 (347)
T 4id9_A 77 GVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAA-GV-RRFVFASS 126 (347)
T ss_dssp TCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHT-TC-SEEEEEEE
T ss_pred CCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEECC
Confidence 9999999988654333334667888988888888888774 23 35555553
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=64.13 Aligned_cols=94 Identities=10% Similarity=0.110 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|||+ |.+|..++..|...+. ++.++ |++.++++.... . .+.+..+..++++++|+
T Consensus 30 ~~~I~iIG~-G~mG~~~a~~l~~~g~-----~V~~~----~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~Dv 89 (316)
T 2uyy_A 30 DKKIGFLGL-GLMGSGIVSNLLKMGH-----TVTVW----NRTAEKCDLFIQ----E------GARLGRTPAEVVSTCDI 89 (316)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CSSGGGGHHHHH----T------TCEECSCHHHHHHHCSE
T ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHHHH----c------CCEEcCCHHHHHhcCCE
Confidence 579999995 9999999999998774 26553 445555543321 1 12344456678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHH---hhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALN---AVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~---~~a~p~a~vivvtNP 224 (442)
||++...+ ..++++...+. ....++.+|+.++|-
T Consensus 90 Vi~av~~~---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~ 126 (316)
T 2uyy_A 90 TFACVSDP---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTV 126 (316)
T ss_dssp EEECCSSH---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred EEEeCCCH---------------HHHHHHHcCchhHhhcCCCCCEEEECCCC
Confidence 99984411 12333333221 222467788878774
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0029 Score=62.29 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEEec-CcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKIGI-NPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i~~-~~~eal~ 171 (442)
++||+||| +|.+|..++..|+..|.. ++.++ |++. ++.+.....+... . + .+ +..++++
T Consensus 24 ~m~IgvIG-~G~mG~~lA~~L~~~G~~----~V~~~----dr~~~~~~~~~~~~~~~~~~--g----~--~~~s~~e~~~ 86 (317)
T 4ezb_A 24 MTTIAFIG-FGEAAQSIAGGLGGRNAA----RLAAY----DLRFNDPAASGALRARAAEL--G----V--EPLDDVAGIA 86 (317)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCS----EEEEE----CGGGGCTTTHHHHHHHHHHT--T----C--EEESSGGGGG
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHcCCC----eEEEE----eCCCccccchHHHHHHHHHC--C----C--CCCCHHHHHh
Confidence 46999999 599999999999998721 25553 3333 2233333333221 1 2 34 6778999
Q ss_pred CCcEEEEeCC
Q 013466 172 DAEWALLIGA 181 (442)
Q Consensus 172 dADiVIi~ag 181 (442)
+||+||++..
T Consensus 87 ~aDvVi~avp 96 (317)
T 4ezb_A 87 CADVVLSLVV 96 (317)
T ss_dssp GCSEEEECCC
T ss_pred cCCEEEEecC
Confidence 9999999854
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0026 Score=61.57 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-----C-CCCCCCceEEEeccccchhhhHHHHHHHHh-cccCCCc----ccEEEe
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG-----E-VLGPDQPIALKLLGSERSLQALEGVAMELE-DSLFPLL----REVKIG 163 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-----~-l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~-~~~~~~~----~~v~i~ 163 (442)
++|||+|||+ |.+|..++..|... | . +|.++ ++ .++++.+..+.. ....... .++..+
T Consensus 7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~-----~V~~~----~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 75 (317)
T 2qyt_A 7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL-----EVSWI----AR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVT 75 (317)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE-----EEEEE----CC-HHHHHHHHHHTSEEEECSSCEEEECCSEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC-----CEEEE----Ec-HHHHHHHHhcCCeEEEeCCCCeEEecceEe
Confidence 3479999995 99999999999987 5 3 25553 44 344443322000 0000000 012222
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
++.++++++|+||++..... +.++.+.+..+..++..|+.++|-.+.
T Consensus 76 -~~~~~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 76 -DNPAEVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp -SCHHHHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred -cCccccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 34567889999999844221 233444555544457788888887754
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0009 Score=67.29 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=60.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+++||+||| .|.+|..++..|+..|. ++.++ |++.++++.. ... .+....+..+.++++
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~-----~V~v~----dr~~~~~~~l----~~~------g~~~~~s~~e~~~~a 79 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGH-----ECVVY----DLNVNAVQAL----ERE------GIAGARSIEEFCAKL 79 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHH----HTT------TCBCCSSHHHHHHHS
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCC-----EEEEE----eCCHHHHHHH----HHC------CCEEeCCHHHHHhcC
Confidence 3457999999 59999999999999874 35553 5555555433 211 122334556777788
Q ss_pred ---cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 174 ---EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 174 ---DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|+||++...+ .+.++...+.....++.+||..+|-
T Consensus 80 ~~~DvVi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~ 117 (358)
T 4e21_A 80 VKPRVVWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS 117 (358)
T ss_dssp CSSCEEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred CCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 9999974311 1333445555554567888888764
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00072 Score=65.08 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=42.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+|+||+|||+ |.+|..++..|...+. ++.+ + | +.++++.... . . +....+..++++++|
T Consensus 2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~-----~V~~--~--~-~~~~~~~~~~----~--g----~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 2 NAMKLGFIGL-GIMGSPMAINLARAGH-----QLHV--T--T-IGPVADELLS----L--G----AVNVETARQVTEFAD 60 (295)
T ss_dssp --CEEEECCC-STTHHHHHHHHHHTTC-----EEEE--C--C-SSCCCHHHHT----T--T----CBCCSSHHHHHHTCS
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHhCCC-----EEEE--E--c-CHHHHHHHHH----c--C----CcccCCHHHHHhcCC
Confidence 3579999995 9999999999998763 2544 3 3 3444443221 1 1 122344567789999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 61 ~vi~~vp 67 (295)
T 1yb4_A 61 IIFIMVP 67 (295)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999854
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00074 Score=65.81 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~ 167 (442)
++|||.|+||+|.||++++..|+..|. .|... +++....+ ++.+. ++.+ ..| ..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~----~l~~~------~~~~~~~Dl~d~~~~~ 72 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH-----DLVLI----HRPSSQIQ----RLAYL------EPECRVAEMLDHAGLE 72 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ECTTSCGG----GGGGG------CCEEEECCTTCHHHHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ecChHhhh----hhccC------CeEEEEecCCCHHHHH
Confidence 346999999999999999999999773 24442 33322221 11110 1111 111 13
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+++.......+..+.+..|..-...+.+.+.+. + -..+|.+|-
T Consensus 73 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~~v~~SS 126 (342)
T 2x4g_A 73 RALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-R-VPRILYVGS 126 (342)
T ss_dssp HHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-T-CSCEEEECC
T ss_pred HHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-C-CCeEEEECC
Confidence 56789999999988543212244556788888888888888875 2 245666664
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0042 Score=64.78 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=62.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---CC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---dA 173 (442)
|||+|||+ |.+|..++..|+..|. +|.++ |++.++++....+.... +...++..+.+..+.++ ++
T Consensus 2 MkIgVIG~-G~mG~~lA~~La~~G~-----~V~v~----dr~~~~~~~l~~~~g~~--~~~~~i~~~~~~~e~v~~l~~a 69 (478)
T 1pgj_A 2 MDVGVVGL-GVMGANLALNIAEKGF-----KVAVF----NRTYSKSEEFMKANASA--PFAGNLKAFETMEAFAASLKKP 69 (478)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CSSHHHHHHHHHHTTTS--TTGGGEEECSCHHHHHHHBCSS
T ss_pred CEEEEECh-HHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHhcCCC--CCCCCeEEECCHHHHHhcccCC
Confidence 58999995 9999999999999874 26653 55556665444322100 11123555555445554 59
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
|+||++...+ +.+.++.+.+..+..++.+||..+|-..
T Consensus 70 DvVilaVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~ 107 (478)
T 1pgj_A 70 RKALILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHF 107 (478)
T ss_dssp CEEEECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred CEEEEecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence 9999974321 1233344445444456778888887653
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0034 Score=64.85 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC----------CcccEEEec
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP----------LLREVKIGI 164 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~----------~~~~v~i~~ 164 (442)
+|.+|+||| .|-||..++-.|+..|. ++.- + |+++++.+.+-....+..-+ ...+.+.++
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~-----~V~g--~--Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt 89 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGH-----RVVG--Y--DVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAE 89 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTC-----EEEE--E--CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCC-----cEEE--E--ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEc
Confidence 577999999 59999999999998774 2332 3 44445544332110000000 013567888
Q ss_pred CcccccCCCcEEEEeCCcCCCCCC-cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~-~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+..+++++||++|++.+.|.++.. --+..+ ....+.+++.++..
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~ 134 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAK 134 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhc
Confidence 888899999999999888754432 112222 24466677777653
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00099 Score=67.49 Aligned_cols=103 Identities=16% Similarity=0.016 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHh---cccCC-C-----cccEE-Eec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELE---DSLFP-L-----LREVK-IGI 164 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~---~~~~~-~-----~~~v~-i~~ 164 (442)
+|||+|||| |.+|..++..|+.. |. ++.+++. .+++.+.++....... ..... . ...+. +++
T Consensus 2 ~mkI~ViGa-G~~G~~~a~~La~~~G~-----~V~~~~~-~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 74 (404)
T 3c7a_A 2 TVKVCVCGG-GNGAHTLSGLAASRDGV-----EVRVLTL-FADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITK 74 (404)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSTTE-----EEEEECC-STTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEES
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCC-----EEEEEeC-CCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeC
Confidence 469999995 99999999999873 53 3555320 1144444443211100 00000 0 00122 444
Q ss_pred CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe
Q 013466 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv 221 (442)
+..+++++||+||++.... ...++.+.|..+..++.+|+..
T Consensus 75 ~~~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 75 DPEIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp CHHHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEET
T ss_pred CHHHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEEc
Confidence 5557799999999985421 1345556666655567766654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0028 Score=61.98 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+||| .|.+|..++..|+..|. ++.++ |++.++++..+. . .+....+..+++++||
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~-----~V~~~----dr~~~~~~~~~~----~------g~~~~~~~~e~~~~aD 67 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGK-----RVAIW----NRSPGKAAALVA----A------GAHLCESVKAALSASP 67 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----CSSHHHHHHHHH----H------TCEECSSHHHHHHHSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHH----C------CCeecCCHHHHHhcCC
Confidence 357999999 59999999999999874 25553 555565554322 1 1234456678899999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 68 vVi~~vp 74 (306)
T 3l6d_A 68 ATIFVLL 74 (306)
T ss_dssp EEEECCS
T ss_pred EEEEEeC
Confidence 9999843
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0016 Score=63.41 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=66.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--c----
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P---- 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~---- 166 (442)
.+++||.|+||+|.||++++..|+..|. .|.+. +++.+.......++...... .+.+.. | +
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~d~~~~ 70 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGY-----DVVIA----DNLVNSKREAIARIEKITGK---TPAFHETDVSDERAL 70 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----CCCSSSCTHHHHHHHHHHSC---CCEEECCCTTCHHHH
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCC-----cEEEE----ecCCcchHHHHHHHHhhcCC---CceEEEeecCCHHHH
Confidence 3457999999999999999999999874 24442 22222222222222211101 122211 1 1
Q ss_pred ccccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.++++ +.|+||..|+..... .....+.+..|..-...+.+.+.+. +. ..|+++|
T Consensus 71 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~iv~~S 128 (341)
T 3enk_A 71 ARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AV-KRIVFSS 128 (341)
T ss_dssp HHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred HHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CC-CEEEEEe
Confidence 23444 799999998854211 1123456778888888888888874 22 3555555
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=59.78 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c---C----ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---N----PYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~---~----~~e 168 (442)
|||.|+||+|.||++++..|+..|. .|.+. +++.+.+... ..+.+. . + ..+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~-----~V~~~----~R~~~~~~~~------------~~~~~~~~D~~d~~~~~~~ 59 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY-----QIYAG----ARKVEQVPQY------------NNVKAVHFDVDWTPEEMAK 59 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC-----EEEEE----ESSGGGSCCC------------TTEEEEECCTTSCHHHHHT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCccchhhc------------CCceEEEecccCCHHHHHH
Confidence 5899999999999999999998873 24442 3333322110 112211 1 1 235
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++++|+||.++|..... .+..|..-...+.+.+.+. .-..++.++-
T Consensus 60 ~~~~~d~vi~~ag~~~~~------~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS 106 (219)
T 3dqp_A 60 QLHGMDAIINVSGSGGKS------LLKVDLYGAVKLMQAAEKA--EVKRFILLST 106 (219)
T ss_dssp TTTTCSEEEECCCCTTSS------CCCCCCHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred HHcCCCEEEECCcCCCCC------cEeEeHHHHHHHHHHHHHh--CCCEEEEECc
Confidence 688999999998865421 3344555566666666663 2346666664
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0064 Score=59.45 Aligned_cols=175 Identities=13% Similarity=-0.033 Sum_probs=89.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEe-cC----
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIG-IN---- 165 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~-~~---- 165 (442)
+..+++||.|+||+|.||++++..|+..|. .|.......+.....+ .++....... ..++.+. .|
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~d~ 91 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-----VVIGLDNFSTGHQYNL----DEVKTLVSTEQWSRFCFIEGDIRDL 91 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCHHHH----HHHHHTSCHHHHTTEEEEECCTTCH
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeCCCCCchhhh----hhhhhccccccCCceEEEEccCCCH
Confidence 334568999999999999999999999874 2433222111111222 2222110000 0122221 11
Q ss_pred --cccccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH----HHHHHCC
Q 013466 166 --PYELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAP 237 (442)
Q Consensus 166 --~~eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~----~~~k~s~ 237 (442)
..++++++|+||.+++....+. .+..+.+..|..-...+.+.+.+. +.. .++.+|-.. +... .+.+..+
T Consensus 92 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~-~~v~~SS~~-vyg~~~~~~~~E~~~ 168 (351)
T 3ruf_A 92 TTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQ-SFTYAASSS-TYGDHPALPKVEENI 168 (351)
T ss_dssp HHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCS-EEEEEEEGG-GGTTCCCSSBCTTCC
T ss_pred HHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEecHH-hcCCCCCCCCccCCC
Confidence 1456789999999988532111 133456788888888888888875 332 455554221 0000 0000000
Q ss_pred CCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeec
Q 013466 238 SIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (442)
Q Consensus 238 ~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H 279 (442)
..+...-+.+-+...++-..+++..|+...-++...|+|..
T Consensus 169 -~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 209 (351)
T 3ruf_A 169 -GNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRR 209 (351)
T ss_dssp -CCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTT
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcC
Confidence 00111111122223344444556678887777655677854
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00096 Score=60.49 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||.|+||+|.+|++++..|+..+.+. .+.+ + +++... +..... ....++.-.....+++ +|+
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~---~V~~--~--~r~~~~------~~~~~~-~~~~D~~~~~~~~~~~--~d~ 68 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLA---KVIA--P--ARKALA------EHPRLD-NPVGPLAELLPQLDGS--IDT 68 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC---EEEC--C--BSSCCC------CCTTEE-CCBSCHHHHGGGCCSC--CSE
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCC---eEEE--E--eCCCcc------cCCCce-EEeccccCHHHHHHhh--hcE
Confidence 4689999999999999999999987521 1333 2 333222 000000 0000000000112233 899
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.++|.......+..+....|......+.+.+.+. + -..++.++-
T Consensus 69 vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~Ss 114 (215)
T 2a35_A 69 AFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-G-ARHYLVVSA 114 (215)
T ss_dssp EEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-T-CCEEEEECC
T ss_pred EEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-C-CCEEEEECC
Confidence 999988543222345566778888888888888774 2 235666654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00098 Score=61.81 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+||| +|.+|..++..|...+. ++.+. +++.++++. +.+. .+... +..++++++|+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~-----~V~~~----~r~~~~~~~----~~~~------g~~~~-~~~~~~~~~Dv 86 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGF-----KVVVG----SRNPKRTAR----LFPS------AAQVT-FQEEAVSSPEV 86 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----ESSHHHHHH----HSBT------TSEEE-EHHHHTTSCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHH----HHHc------CCcee-cHHHHHhCCCE
Confidence 57899999 59999999999998774 25553 455454432 2211 12232 45678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
||++... ... .+ ++ + +.... ++.+++.++|....
T Consensus 87 Vi~av~~----~~~-~~-------v~-~----l~~~~-~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 87 IFVAVFR----EHY-SS-------LC-S----LSDQL-AGKILVDVSNPTEQ 120 (215)
T ss_dssp EEECSCG----GGS-GG-------GG-G----GHHHH-TTCEEEECCCCCHH
T ss_pred EEECCCh----HHH-HH-------HH-H----HHHhc-CCCEEEEeCCCccc
Confidence 9998541 111 11 11 1 22333 67899999998754
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0049 Score=60.26 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc----ccEEEecCcccccCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL----REVKIGINPYELFED 172 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~----~~v~i~~~~~eal~d 172 (442)
+||+|||| |.+|..++..|...|. +|.+. +++. .+.+..+=........ ..+.++ ++.+++.+
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~~----~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~-~~~~~~~~ 69 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGE-----DVHFL----LRRD--YEAIAGNGLKVFSINGDFTLPHVKGY-RAPEEIGP 69 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSC-----CEEEE----CSTT--HHHHHHTCEEEEETTCCEEESCCCEE-SCHHHHCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----EcCc--HHHHHhCCCEEEcCCCeEEEeeceee-cCHHHcCC
Confidence 68999995 9999999999999873 36664 3332 2222110000000000 012233 34566889
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeecc
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~g 247 (442)
+|+||++.-. . -+.+..+.+..+.+++..|+.+.|-.+....+ .+..+ +.+++++.
T Consensus 70 ~D~vilavk~----~------------~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-~~~~~--~~~v~~~~ 125 (312)
T 3hn2_A 70 MDLVLVGLKT----F------------ANSRYEELIRPLVEEGTQILTLQNGLGNEEAL-ATLFG--AERIIGGV 125 (312)
T ss_dssp CSEEEECCCG----G------------GGGGHHHHHGGGCCTTCEEEECCSSSSHHHHH-HHHTC--GGGEEEEE
T ss_pred CCEEEEecCC----C------------CcHHHHHHHHhhcCCCCEEEEecCCCCcHHHH-HHHCC--CCcEEEEE
Confidence 9999997431 1 12344455555556788999999988755433 33322 12565543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0026 Score=62.49 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=65.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH---HhcccCCCc--ccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDSLFPLL--REVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D---L~~~~~~~~--~~v~i~~~~~eal~ 171 (442)
+||+|||| |.+|..++..|...|. +|.+. +++. .+.+..+ +.....+.. ..+.++.+..++.+
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~-----~V~~~----~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~ 70 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGH-----CVSVV----SRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET 70 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTC-----EEEEE----CSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-----eEEEE----eCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC
Confidence 69999995 9999999999998773 36664 3322 1222111 111000100 01234444444445
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeeccch
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~gT~ 249 (442)
++|+||++.-. .. +.+..+.+..+..++..|+.+.|-.+..-. +.+..+. .+++++.+.
T Consensus 71 ~~DlVilavK~----~~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-l~~~~~~--~~vl~g~~~ 129 (320)
T 3i83_A 71 KPDCTLLCIKV----VE------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE-VAAAFPD--NEVISGLAF 129 (320)
T ss_dssp CCSEEEECCCC----CT------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH-HHHHSTT--SCEEEEEEE
T ss_pred CCCEEEEecCC----CC------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH-HHHHCCC--CcEEEEEEE
Confidence 99999997432 11 112233444444578889999998764322 3333321 256554433
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.01 Score=58.66 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------c
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------P 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~ 166 (442)
+.++|.|+||+|.+|++++..|+.. |.. .|.+. +++..++.....++.+. .+... .| .
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~----~V~~~----~r~~~~~~~~~~~~~~~------~v~~~~~Dl~d~~~l 85 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAK----KIIVY----SRDELKQSEMAMEFNDP------RMRFFIGDVRDLERL 85 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCS----EEEEE----ESCHHHHHHHHHHHCCT------TEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCC----EEEEE----ECChhhHHHHHHHhcCC------CEEEEECCCCCHHHH
Confidence 3479999999999999999999987 631 24442 44545554444444321 22221 11 1
Q ss_pred ccccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++++.|+||.+++....+. ....+.+..|+.-...+++.+.+. + -..|+.+|
T Consensus 86 ~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~-v~~~V~~S 141 (344)
T 2gn4_A 86 NYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-A-ISQVIALS 141 (344)
T ss_dssp HHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-T-CSEEEEEC
T ss_pred HHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-C-CCEEEEec
Confidence 356889999999988653221 123466778888888888887774 2 33566665
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0025 Score=61.99 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=52.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||++|.+|..++..|...|. .+.++ |++.+. +..+++++||+|
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~-----~V~~~----~~~~~~-----------------------~~~~~~~~aDvV 69 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY-----PISIL----DREDWA-----------------------VAESILANADVV 69 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC-----CEEEE----CTTCGG-----------------------GHHHHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----eEEEE----ECCccc-----------------------CHHHHhcCCCEE
Confidence 5899999449999999999998774 25553 333220 234678899999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++.... .+.++.+.+..+..++++|+.++.
T Consensus 70 ilavp~~----------------~~~~vl~~l~~~l~~~~iv~~~~s 100 (298)
T 2pv7_A 70 IVSVPIN----------------LTLETIERLKPYLTENMLLADLTS 100 (298)
T ss_dssp EECSCGG----------------GHHHHHHHHGGGCCTTSEEEECCS
T ss_pred EEeCCHH----------------HHHHHHHHHHhhcCCCcEEEECCC
Confidence 9985321 144445555554456777666543
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0034 Score=61.36 Aligned_cols=121 Identities=7% Similarity=-0.020 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
+|||+|||| |.+|..++..|. .+. +|.+. +++.+.++.+..+=.....+............++..++|+
T Consensus 2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~-----~V~~~----~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (307)
T 3ego_A 2 SLKIGIIGG-GSVGLLCAYYLS-LYH-----DVTVV----TRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDL 70 (307)
T ss_dssp CCEEEEECC-SHHHHHHHHHHH-TTS-----EEEEE----CSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHh-cCC-----ceEEE----ECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCE
Confidence 379999995 999999999999 663 36663 4444444433221000000000000000111356789999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeeccch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTR 249 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~gT~ 249 (442)
||++.-. .-+.++.+.+..+ .++. |+.+.|-++..- .+.+ .+|. +++++.+.
T Consensus 71 vilavK~----------------~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e-~l~~---~~~~~~vl~g~~~ 123 (307)
T 3ego_A 71 LVVTVKQ----------------HQLQSVFSSLERI-GKTN-ILFLQNGMGHIH-DLKD---WHVGHSIYVGIVE 123 (307)
T ss_dssp EEECCCG----------------GGHHHHHHHTTSS-CCCE-EEECCSSSHHHH-HHHT---CCCSCEEEEEEEC
T ss_pred EEEEeCH----------------HHHHHHHHHhhcC-CCCe-EEEecCCccHHH-HHHH---hCCCCcEEEEEEe
Confidence 9997431 1134445555554 4677 888999887542 2322 2344 66666554
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.005 Score=59.04 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||.|+||+|.||++++..|...|. +|... .++.+. ..+.....+.+++.++|.|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-----~V~~l----~R~~~~----------------~~~~~~~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-----EVTLV----SRKPGP----------------GRITWDELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCCT----------------TEEEHHHHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCCCc----------------CeeecchhhHhhccCCCEE
Confidence 7999999999999999999999874 23321 222111 0111111235678899999
Q ss_pred EEeCCcCCCC----CC--cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe
Q 013466 177 LLIGAKPRGP----GM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (442)
Q Consensus 177 Ii~ag~~~kp----g~--~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv 221 (442)
|..++.+-.. +. ...+....|....+.+...+.+...+..+++..
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~ 106 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV 106 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 9987743211 11 234566778777778877777642223344443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0014 Score=56.58 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||+ |.+|..++..|...+. + +.+ .+++.++++..+.++. ..+....+..+.++++|+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~----~-v~v----~~r~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY----K-VTV----AGRNIDHVRAFAEKYE-------YEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC----E-EEE----EESCHHHHHHHHHHHT-------CEEEECSCHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC----E-EEE----EcCCHHHHHHHHHHhC-------CceEeecCHHHHhcCCCE
Confidence 569999995 9999999998887553 2 545 3566677766655543 123334455678899999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
||.+.+.+. +-... ... .++.+++.+++|.++
T Consensus 84 vi~at~~~~-~~~~~------------------~~l-~~g~~vid~~~p~~~ 115 (144)
T 3oj0_A 84 IITATSSKT-PIVEE------------------RSL-MPGKLFIDLGNPPNI 115 (144)
T ss_dssp EEECSCCSS-CSBCG------------------GGC-CTTCEEEECCSSCSB
T ss_pred EEEeCCCCC-cEeeH------------------HHc-CCCCEEEEccCCccC
Confidence 999866442 11111 111 357899999999653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0034 Score=60.57 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||.|+||+|.||++++..|+..|. .|... +++..... +.... ....++. .....++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~-----~~~~~-~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN-----TPIIL----TRSIGNKA-----INDYE-YRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCCC----------CCE-EEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEEE----eCCCCccc-----CCceE-EEEcccc-HHHHHHhhcCCCE
Confidence 36999999999999999999999874 24332 22222211 11111 0001122 2223467889999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||.+++..... +..+.+..|..-...+.+.+.+. +.. .+|.+|
T Consensus 66 Vih~a~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~-~~~-r~v~~S 108 (311)
T 3m2p_A 66 VVHLAATRGSQ--GKISEFHDNEILTQNLYDACYEN-NIS-NIVYAS 108 (311)
T ss_dssp EEECCCCCCSS--SCGGGTHHHHHHHHHHHHHHHHT-TCC-EEEEEE
T ss_pred EEEccccCCCC--ChHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 99998854422 44456778888888898888874 333 455554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0049 Score=64.39 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc---C
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---E 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal---~ 171 (442)
.++||+||| .|.+|..++..|+..|. +|.++ |++.++++..... ... ..++....+..+.+ +
T Consensus 3 ~~~kIgiIG-lG~MG~~lA~~L~~~G~-----~V~v~----dr~~~~~~~l~~~--g~~---g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 3 AQADIALIG-LAVMGQNLILNMNDHGF-----VVCAF----NRTVSKVDDFLAN--EAK---GTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CCBSEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----CSSTHHHHHHHHT--TTT---TSSCEECSSHHHHHHTBC
T ss_pred CCCEEEEEC-hhHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHhc--ccC---CCceeccCCHHHHHhhcc
Confidence 457999999 59999999999999885 36663 5555665543221 000 11233334444444 4
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
++|+||++...+ +.+.++...+..+..++.+||..+|-.
T Consensus 68 ~aDvVil~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 68 KPRRIILLVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SSCEEEECSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCEEEEecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 699999874321 234444455555555778888888753
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.005 Score=60.29 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
.|.||++|| .|.+|+.++..|+..|. ++..+ |++.++++..+. . ..+......|+.++||
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~-----~v~v~----dr~~~~~~~l~~----~------Ga~~a~s~~e~~~~~d 61 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGY-----LLNVF----DLVQSAVDGLVA----A------GASAARSARDAVQGAD 61 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEEE----CSSHHHHHHHHH----T------TCEECSSHHHHHTTCS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCC-----eEEEE----cCCHHHHHHHHH----c------CCEEcCCHHHHHhcCC
Confidence 367999999 79999999999999885 35553 556666654422 1 1234455678899999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||++-
T Consensus 62 vv~~~l 67 (300)
T 3obb_A 62 VVISML 67 (300)
T ss_dssp EEEECC
T ss_pred ceeecC
Confidence 999873
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.007 Score=60.09 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||+ |.+|.+++..|...|. .+.+. +++.+.....+.+. . +... +..+++++||+
T Consensus 16 ~~~I~IIG~-G~mG~alA~~L~~~G~-----~V~~~----~~~~~~~~~~a~~~-----G----~~~~-~~~e~~~~aDv 75 (338)
T 1np3_A 16 GKKVAIIGY-GSQGHAHACNLKDSGV-----DVTVG----LRSGSATVAKAEAH-----G----LKVA-DVKTAVAAADV 75 (338)
T ss_dssp TSCEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CCTTCHHHHHHHHT-----T----CEEE-CHHHHHHTCSE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCcC-----EEEEE----ECChHHHHHHHHHC-----C----CEEc-cHHHHHhcCCE
Confidence 468999995 9999999999998874 25553 33333322222211 1 2233 55678999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHH-HHHhhhCCCeEEEEeCCchh
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGK-ALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~-~I~~~a~p~a~vivvtNPvd 226 (442)
||++.. .+...++.. .+..+..++++|+.+ ..++
T Consensus 76 Vilavp----------------~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~ 110 (338)
T 1np3_A 76 VMILTP----------------DEFQGRLYKEEIEPNLKKGATLAFA-HGFS 110 (338)
T ss_dssp EEECSC----------------HHHHHHHHHHHTGGGCCTTCEEEES-CCHH
T ss_pred EEEeCC----------------cHHHHHHHHHHHHhhCCCCCEEEEc-CCch
Confidence 999843 122244444 555554567776654 3443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=63.59 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dADi 175 (442)
+||+|||| |.+|..++..|...|. +|.+.. ++.+.++ +.... .. ....+..+..+++ +++|+
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~-----~V~~~~----r~~~~~~-----~~~~~-g~-~~~~~~~~~~~~~~~~~D~ 65 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLP-----HTTLIG----RHAKTIT-----YYTVP-HA-PAQDIVVKGYEDVTNTFDV 65 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCT-----TCEEEE----SSCEEEE-----EESST-TS-CCEEEEEEEGGGCCSCEEE
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCC-----eEEEEE----eccCcEE-----EEecC-Ce-eccceecCchHhcCCCCCE
Confidence 69999995 9999999999998773 366643 3323221 11111 11 1223334455665 89999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~l 228 (442)
||++... . -+.++.+.+..+.+++..|+.+.|-.+..
T Consensus 66 vilavk~----~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~ 102 (294)
T 3g17_A 66 IIIAVKT----H------------QLDAVIPHLTYLAHEDTLIILAQNGYGQL 102 (294)
T ss_dssp EEECSCG----G------------GHHHHGGGHHHHEEEEEEEEECCSSCCCG
T ss_pred EEEeCCc----c------------CHHHHHHHHHHhhCCCCEEEEeccCcccH
Confidence 9997431 1 13334444454444678899999988654
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0061 Score=58.71 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||.|+||+|.||++++..|+..|. .+.+. .++....+.. .........++.- ....++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~v~~~----~~~~~~~~~~----~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNE-----IVVID----NLSSGNEEFV----NEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSC-----EEEEC----CCSSCCGGGS----CTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----EEEEE----cCCCCChhhc----CCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 56899999999999999999998772 13332 1111111100 0000000000100 123456789999
Q ss_pred EEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.+++.+... ..+..+.+..|..-...+.+.+.+. + -..+|++|-
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~-~~~iv~~SS 114 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-G-VSRIVFTST 114 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCeEEEeCc
Confidence 99998855322 2345667788988888888888775 2 346666664
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0023 Score=59.29 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.++|.|+||+|+||.+++..|+..|.+. .|.+. +++.+.+.... ..... ....++.-.....+++++.|+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~---~V~~~----~r~~~~~~~~~--~~~~~-~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFS---KVTLI----GRRKLTFDEEA--YKNVN-QEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCS---EEEEE----ESSCCCCCSGG--GGGCE-EEECCGGGGGGGGGGGSSCSE
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCC---EEEEE----EcCCCCccccc--cCCce-EEecCcCCHHHHHHHhcCCCE
Confidence 4689999999999999999999988532 24442 23322221100 00000 000000000112456788999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
||.++|.... +.+..+.+..|..-...+.+.+.+. ....|++++-
T Consensus 88 vi~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~iv~~SS 132 (242)
T 2bka_A 88 GFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAG--GCKHFNLLSS 132 (242)
T ss_dssp EEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEECCCcccc-cCCcccceeeeHHHHHHHHHHHHHC--CCCEEEEEcc
Confidence 9999885321 1122455667777777788777764 2346666664
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0067 Score=56.83 Aligned_cols=117 Identities=10% Similarity=-0.010 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc--
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE-- 168 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e-- 168 (442)
++++|.|+||+|+||.+++..|+. .|. .|.+. +++.+.++....++.... . ++.. ..| +.+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-----~V~~~----~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dl~~~~~~ 69 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVLT----ARDVTRGQAAVQQLQAEG-L---SPRFHQLDIDDLQSI 69 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEEE----ESSHHHHHHHHHHHHHTT-C---CCEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-----eEEEE----eCChHHHHHHHHHHHhcC-C---eeEEEECCCCCHHHH
Confidence 356899999999999999999999 774 25442 445555555555554321 1 1221 111 122
Q ss_pred --cc-------CCCcEEEEeCCcCCCCCC--c----HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --LF-------EDAEWALLIGAKPRGPGM--E----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --al-------~dADiVIi~ag~~~kpg~--~----r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ ...|+||..||....+.. . -...+..|..-...+.+.+..+..+.+.|++++.-
T Consensus 70 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~ 140 (276)
T 1wma_A 70 RALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 140 (276)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred HHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence 12 278999999886532211 1 12345667666666666665542234577777754
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=61.74 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=60.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc---CCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF---EDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal---~dA 173 (442)
+||+|||+ |.+|..++..|+..|. +|.++ |++.++++..... ... . ..+..+.+..+.+ +++
T Consensus 3 m~IgvIG~-G~mG~~lA~~La~~G~-----~V~v~----dr~~~~~~~l~~~--~~~-g--~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIGL-AVMGQNLILNMNDHGF-----VVCAF----NRTVSKVDDFLAN--EAK-G--TKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CSSTHHHHHHHHT--TTT-T--SSCEECSSHHHHHHHBCSS
T ss_pred CeEEEECh-HHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHhc--ccc-C--CCeEEeCCHHHHHhhccCC
Confidence 58999995 9999999999999874 26653 5555665544321 000 0 1244444444544 599
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|+||++...+ +.+.++...+..+..++.+||..+|-.
T Consensus 68 DvVilaVp~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 68 RRIILLVKAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp CEEEECSCTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred CEEEEeCCCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 9999974321 123334444554444677888887764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0081 Score=58.38 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~e 168 (442)
|+||.|+||+|.||++++..|+..|. .|....... + ........++... . ++.. ..| + .+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~~r~~-~--~~~~~~~~~l~~~--~---~~~~~~~Dl~d~~~~~~ 67 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI-----DLIVFDNLS-R--KGATDNLHWLSSL--G---NFEFVHGDIRNKNDVTR 67 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCC-S--TTHHHHHHHHHTT--C---CCEEEECCTTCHHHHHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC-----EEEEEeCCC-c--cCchhhhhhhccC--C---ceEEEEcCCCCHHHHHH
Confidence 56899999999999999999998773 244321111 1 1111122223321 1 1221 111 1 24
Q ss_pred ccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++ +|+||.+++..... ..+-.+.+..|..-...+.+.+.+. ...+.||.+|-
T Consensus 68 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS 125 (347)
T 1orr_A 68 LITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSST 125 (347)
T ss_dssp HHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEE
T ss_pred HHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecc
Confidence 5666 99999998854210 0133456778888888888888876 34456666664
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.01 Score=58.15 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=68.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------c
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------P 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~ 166 (442)
.+++||.|+||+|.||++++..|+..|. .|...........+.+......+.... ..++.+. .| .
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~ 96 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVGLDNFATGHQRNLDEVRSLVSEKQ---WSNFKFIQGDIRNLDDC 96 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCHHHHHHHHHHSCHHH---HTTEEEEECCTTSHHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeCCCccchhhHHHHhhhccccc---CCceEEEECCCCCHHHH
Confidence 3467999999999999999999998773 244322211111123332222111000 0122221 11 1
Q ss_pred ccccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++++|+||.+++....+. .+..+.+..|..-...+.+.+.+. + -..|+.+|-
T Consensus 97 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~~v~~SS 153 (352)
T 1sb8_A 97 NNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-K-VQSFTYAAS 153 (352)
T ss_dssp HHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-T-CSEEEEEEE
T ss_pred HHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEecc
Confidence 346789999999988532110 123456677888888888887774 2 235555553
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.01 Score=62.18 Aligned_cols=100 Identities=8% Similarity=0.094 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--- 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--- 172 (442)
..||+|||+ |.+|..++..|+..|. +|.++ |++.++++....... + ...+..+.+..+.+++
T Consensus 10 ~~~IgvIGl-G~MG~~lA~~La~~G~-----~V~v~----dr~~~~~~~l~~~~~----~-~~gi~~~~s~~e~v~~l~~ 74 (497)
T 2p4q_A 10 SADFGLIGL-AVMGQNLILNAADHGF-----TVCAY----NRTQSKVDHFLANEA----K-GKSIIGATSIEDFISKLKR 74 (497)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----CSSSHHHHHHHHTTT----T-TSSEECCSSHHHHHHTSCS
T ss_pred CCCEEEEee-HHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHcccc----c-CCCeEEeCCHHHHHhcCCC
Confidence 369999995 9999999999999885 36663 555566554322000 0 0124444445555655
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+|+||++...+ +.++++.+.+..+..++.+||..+|-.
T Consensus 75 aDvVil~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 75 PRKVMLLVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SCEEEECCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCEEEEEcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 99999974311 234455556666555678888888764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.013 Score=57.79 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH--cCCCCCCCceEEEeccccchhhhHHHHHH---HHhcccCCCcccEE-EecC--c
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA--GEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPLLREVK-IGIN--P 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~--~~l~~~~~~I~L~l~d~d~~~~~l~g~a~---DL~~~~~~~~~~v~-i~~~--~ 166 (442)
+++||.|+||+|.||++++..|+. .|. .|.+. +++......... .+.+........+. +..| +
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 79 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKA-----KVVVL----DKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN 79 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTS-----EEEEE----ECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCC-----eEEEE----ECCCccccccccchhhhhhhhhccccCceEEECCCCC
Confidence 457999999999999999999998 664 24332 221110000000 00000000000112 1122 1
Q ss_pred ----ccc-cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ----YEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ----~ea-l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++ ..++|+||.+||.......+..+.+..|+.-...+.+.+.+. + +.||++|-
T Consensus 80 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~--~~~V~~SS 138 (362)
T 3sxp_A 80 PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK-K--AKVIYASS 138 (362)
T ss_dssp HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEEEE
T ss_pred HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEeCc
Confidence 123 679999999988544333455677888999899999888774 2 34666654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.023 Score=53.07 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
..+|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++....++.... . ++.. ..| +.
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~ 75 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGA-----AVVV----ADINAEAAEAVAKQIVADG-G---TAISVAVDVSDPESAKA 75 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---EEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHhcC-C---cEEEEEccCCCHHHHHH
Confidence 45889999999999999999999884 2544 2556667776666664321 1 2222 122 11
Q ss_pred ------cccCCCcEEEEeCCcCC----CC--CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 168 ------ELFEDAEWALLIGAKPR----GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~----kp--g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+...|++|..+|... .+ ..+. ...+..|..- .+.+.+.+.+. ..+.|++++...
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~~ 150 (253)
T 3qiv_A 76 MADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR--GGGAIVNQSSTA 150 (253)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCcc
Confidence 12337899999988621 11 1121 2345556543 56666666663 467888888643
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.019 Score=55.71 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~------~~~e 168 (442)
++||.|+||+|.||++++..|+..|. .|..... +.+..... .++.+.. ....++.+ .. ...+
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~~r----~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~ 73 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGY-----TVRATVR----DPTNVKKV-KHLLDLP-KAETHLTLWKADLADEGSFDE 73 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEES----CTTCHHHH-HHHHTST-THHHHEEEEECCTTSTTTTHH
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEC----CcchhHHH-HHHHhcc-cCCCeEEEEEcCCCCHHHHHH
Confidence 46899999999999999999998774 2433222 22211111 1111100 00001221 11 1245
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++++|+||..|+.......+ ..+.+..|..-...+.+.+.+. +.-..|+++|-
T Consensus 74 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~riV~~SS 128 (337)
T 2c29_D 74 AIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAA-KTVRRLVFTSS 128 (337)
T ss_dssp HHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHH-SCCCEEEEECC
T ss_pred HHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEeee
Confidence 678999999988743211122 2346788888888888887774 22346666664
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=61.58 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~e 168 (442)
+++|.|+||+|+||++++..|+..|. .|.+. +++..... . .++.. ..| ..+
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~-----~V~~~----~r~~~~~~---------~----~~~~~~~~Dl~d~~~~~~ 60 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAE-----ILRLA----DLSPLDPA---------G----PNEECVQCDLADANAVNA 60 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEE-----EEEEE----ESSCCCCC---------C----TTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----EEEEE----ecCCcccc---------C----CCCEEEEcCCCCHHHHHH
Confidence 45899999999999999999998774 24442 33322211 0 01111 111 134
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++.|+||..||... ...-.+.+..|+.-...+.+.+.+. ..+.||+++
T Consensus 61 ~~~~~D~vi~~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~--~~~~iv~~S 110 (267)
T 3rft_A 61 MVAGCDGIVHLGGISV--EKPFEQILQGNIIGLYNLYEAARAH--GQPRIVFAS 110 (267)
T ss_dssp HHTTCSEEEECCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred HHcCCCEEEECCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEc
Confidence 6778999999998632 2233456788888888888888774 244666665
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0028 Score=59.96 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+|+||+|||+ |.+|..++..|...+. .+.++ |++.++++..+.++. +....+..+.++++|
T Consensus 2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~-----~v~~~----~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 2 NAMKIGIIGV-GKMASAIIKGLKQTPH-----ELIIS----GSSLERSKEIAEQLA---------LPYAMSHQDLIDQVD 62 (259)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTSSC-----EEEEE----CSSHHHHHHHHHHHT---------CCBCSSHHHHHHTCS
T ss_pred CccEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----CCCHHHHHHHHHHcC---------CEeeCCHHHHHhcCC
Confidence 3579999995 9999999999987662 25553 555566554433221 112344557788999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 63 ~Vi~~v~ 69 (259)
T 2ahr_A 63 LVILGIK 69 (259)
T ss_dssp EEEECSC
T ss_pred EEEEEeC
Confidence 9999843
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=62.40 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~e 168 (442)
.++|.|+||+|.||++++..|+..|. .|.+. +++...... +.+. + .++.+. .| + .+
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~----~~~~---l-~~v~~~~~Dl~d~~~~~~ 82 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGH-----EILVI----DNFATGKRE----VLPP---V-AGLSVIEGSVTDAGLLER 82 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTC-----EEEEE----ECCSSSCGG----GSCS---C-TTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCCccchh----hhhc---c-CCceEEEeeCCCHHHHHH
Confidence 46999999999999999999998773 24432 222111110 0000 0 122221 11 1 23
Q ss_pred ccC--CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++ ++|+||.++|.......+..+ +..|..-...+.+.+.+. + -..||+++-
T Consensus 83 ~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~-~-~~~iV~~SS 136 (330)
T 2pzm_A 83 AFDSFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKA-G-VKRLLNFQT 136 (330)
T ss_dssp HHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHH-T-CSEEEEEEE
T ss_pred HHhhcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHc-C-CCEEEEecC
Confidence 566 899999998864322222333 677888888888887764 2 346666653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.059 Score=51.09 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... ....+.. ..| +.+.
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~ 100 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQGL-----KVVGC----ARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILS 100 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----ECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHH
Confidence 35899999999999999999999874 24442 455556665555554321 1112222 112 1222
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCC-CeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASR-NVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p-~a~vivvtNP 224 (442)
+.+.|+||..+|...... .+ -...+..|..- .+.+.+.+.+. +. .+.|++++..
T Consensus 101 ~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~ 173 (279)
T 1xg5_A 101 MFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSM 173 (279)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCG
T ss_pred HHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcCh
Confidence 237999999988643211 12 23345556544 66666777664 22 4677777643
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=56.88 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~------~~~e 168 (442)
++||.|+||+|.||++++..|+..|. .|.....+.+. ...+. ...++... . ++.+ .. ...+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-----~V~~~~r~~~~-~~~~~-~~~~~~~~--~---~~~~~~~Dl~d~~~~~~ 76 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY-----AVNTTVRDPDN-QKKVS-HLLELQEL--G---DLKIFRADLTDELSFEA 76 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC-----EEEEEESCTTC-TTTTH-HHHHHGGG--S---CEEEEECCTTTSSSSHH
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCcch-hhhHH-HHHhcCCC--C---cEEEEecCCCChHHHHH
Confidence 46899999999999999999998774 24332222111 11111 11122211 1 1221 11 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+++++|+||..|+...-...+ ..+.+..|+.-...+.+.+.+. +.-..||++|-.
T Consensus 77 ~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~v~r~V~~SS~ 132 (338)
T 2rh8_A 77 PIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRA-KSVKRVILTSSA 132 (338)
T ss_dssp HHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHC-TTCCEEEEECCH
T ss_pred HHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHc-CCcCEEEEEecH
Confidence 678999999988743211111 1236778888888888877774 213467777643
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.045 Score=53.30 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C-cccccCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N-PYELFED 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~-~~eal~d 172 (442)
+++||.|+||+|.||++++..|+..|. .|... +++...... .+.+.. . ..++.+.. | ...++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~---~~~~~~-~-~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGH-----EVTVV----DNFFTGRKR---NVEHWI-G-HENFELINHDVVEPLYIE 91 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECCSSCCGG---GTGGGT-T-CTTEEEEECCTTSCCCCC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCC-----EEEEE----eCCCccchh---hhhhhc-c-CCceEEEeCccCChhhcC
Confidence 467999999999999999999998773 24332 221111000 011110 0 01233221 2 2346789
Q ss_pred CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 173 ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+|+||.+++..... ..+..+.+..|..-...+.+.+.+. + ..+++++
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~S 140 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-G--ARLLLAS 140 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEC
Confidence 99999998854311 1233456778888888888888775 3 3666665
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0026 Score=56.97 Aligned_cols=101 Identities=13% Similarity=0.051 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~ea 169 (442)
+||.|+||+|.||++++..|+..+. .+.+. +++.+.+. ... ..++.+ ..| ..++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-----~V~~~----~r~~~~~~-------~~~---~~~~~~~~~D~~~~~~~~~~ 64 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-----EVTVL----VRDSSRLP-------SEG---PRPAHVVVGDVLQAADVDKT 64 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCGGGSC-------SSS---CCCSEEEESCTTSHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-----eEEEE----EeChhhcc-------ccc---CCceEEEEecCCCHHHHHHH
Confidence 6899999999999999999999773 24442 33333221 000 011221 111 1356
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++|+||.++|....... ...|......+.+.+.+. + -..++.++-
T Consensus 65 ~~~~d~vi~~a~~~~~~~~-----~~~n~~~~~~~~~~~~~~-~-~~~~v~~Ss 111 (206)
T 1hdo_A 65 VAGQDAVIVLLGTRNDLSP-----TTVMSEGARNIVAAMKAH-G-VDKVVACTS 111 (206)
T ss_dssp HTTCSEEEECCCCTTCCSC-----CCHHHHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred HcCCCEEEECccCCCCCCc-----cchHHHHHHHHHHHHHHh-C-CCeEEEEee
Confidence 7899999998875432111 124666677777777764 2 235666654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.002 Score=52.51 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec----Cccccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI----NPYELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~----~~~eal 170 (442)
++||+|+|| |.+|..++..|...|.. .+.+ .+++.++++... +. .. .... .. ...+.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~----~v~~----~~r~~~~~~~~~----~~--~~--~~~~~d~~~~~~~~~~~ 67 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNY----SVTV----ADHDLAALAVLN----RM--GV--ATKQVDAKDEAGLAKAL 67 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSE----EEEE----EESCHHHHHHHH----TT--TC--EEEECCTTCHHHHHHHT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCc----eEEE----EeCCHHHHHHHH----hC--CC--cEEEecCCCHHHHHHHH
Confidence 469999997 99999999999998731 2444 255555554332 11 10 1111 11 123467
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
+++|+||.+++
T Consensus 68 ~~~d~vi~~~~ 78 (118)
T 3ic5_A 68 GGFDAVISAAP 78 (118)
T ss_dssp TTCSEEEECSC
T ss_pred cCCCEEEECCC
Confidence 89999999875
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0044 Score=57.21 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c---Cccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---NPYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~---~~~eal 170 (442)
++++|.|+||+|.||++++..|+..+. +. .|.+. +++.+.++. +.... .-+..- + ...+.+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~-g~--~V~~~----~r~~~~~~~----~~~~~----~~~~~D~~d~~~~~~~~ 67 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSD-KF--VAKGL----VRSAQGKEK----IGGEA----DVFIGDITDADSINPAF 67 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTT-TC--EEEEE----ESCHHHHHH----TTCCT----TEEECCTTSHHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCC-Cc--EEEEE----EcCCCchhh----cCCCe----eEEEecCCCHHHHHHHH
Confidence 357999999999999999999999731 00 24432 444333321 21100 001110 1 123567
Q ss_pred CCCcEEEEeCCcCCC------------CCC--c-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 EDAEWALLIGAKPRG------------PGM--E-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~dADiVIi~ag~~~k------------pg~--~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++|+||..+|.... +.. + -.+.+..|..-...+.+.+.+. + -..+++++
T Consensus 68 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 132 (253)
T 1xq6_A 68 QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-G-VKHIVVVG 132 (253)
T ss_dssp TTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-T-CSEEEEEE
T ss_pred cCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-C-CCEEEEEc
Confidence 899999998875321 111 0 1134677877778888887775 2 33555555
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0098 Score=56.10 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY------ 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~------ 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... ..+..| +.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~------~~~~~D~~~~~~v~~~ 72 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGA-----TVAIA----DIDIERARQAAAEIGPAA------YAVQMDVTRQDSIDAA 72 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCTTE------EEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCCCc------eEEEeeCCCHHHHHHH
Confidence 35799999999999999999999885 25552 555666666655553211 011111 11
Q ss_pred -----cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. +..+.|++++-.
T Consensus 73 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 143 (259)
T 4e6p_A 73 IAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQ-GRGGKIINMASQ 143 (259)
T ss_dssp HHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEECCh
Confidence 22337999999988643211 111 233455543 445555555553 346888888754
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0043 Score=59.15 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
++++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.. ++.. ..| +.+
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~~~ 67 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD-----TVIGT----ARRTEALDDLVAAYPD-------RAEAISLDVTDGERID 67 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGGHHHHHHCTT-------TEEEEECCTTCHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHhccC-------CceEEEeeCCCHHHHH
Confidence 346899999999999999999999884 24442 4455555544333211 1221 111 111
Q ss_pred --------ccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..||... .+ ..+. ...+..|..- .+.+.+.+.+. ..+.|++++-.
T Consensus 68 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~~sS~ 139 (281)
T 3m1a_A 68 VVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER--GSGSVVNISSF 139 (281)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEcCc
Confidence 1237899999988642 11 1221 2345566544 66666666663 45777777753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.039 Score=46.06 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c-----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P-----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~-----~e 168 (442)
.+||+|+|+ |.+|..++..|...+. ++.+. |++.+.++....++. . .+ +..+ + ..
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~-----~v~~~----d~~~~~~~~~~~~~~-~------~~-~~~d~~~~~~l~~~ 65 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH-----DIVLI----DIDKDICKKASAEID-A------LV-INGDCTKIKTLEDA 65 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHCS-S------EE-EESCTTSHHHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECCHHHHHHHHHhcC-c------EE-EEcCCCCHHHHHHc
Confidence 369999996 9999999999998763 35552 445555543322111 0 11 1111 1 13
Q ss_pred ccCCCcEEEEeCC
Q 013466 169 LFEDAEWALLIGA 181 (442)
Q Consensus 169 al~dADiVIi~ag 181 (442)
.++++|+||++.+
T Consensus 66 ~~~~~d~vi~~~~ 78 (140)
T 1lss_A 66 GIEDADMYIAVTG 78 (140)
T ss_dssp TTTTCSEEEECCS
T ss_pred CcccCCEEEEeeC
Confidence 3789999999854
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.028 Score=52.23 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++....++.... . ++.. ..| +.+
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~ 77 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVV----SDINADAANHVVDEIQQLG-G---QAFACRCDITSEQELSA 77 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHHHHhC-C---ceEEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 2444 2455555655555554221 1 2222 111 111
Q ss_pred cc-------CCCcEEEEeCCcCCC-C-CCc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LF-------EDAEWALLIGAKPRG-P-GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al-------~dADiVIi~ag~~~k-p-g~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ .+.|+||..+|.... + ..+ -...+..|..- ++...+.+.+. ..+.|++++..
T Consensus 78 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 147 (255)
T 1fmc_A 78 LADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITSM 147 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 22 389999998886432 1 122 13345555444 34444444443 35777777753
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.016 Score=55.49 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=82.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC------ccccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN------PYELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~------~~eal 170 (442)
|||.|+||+|.||++++..|+..|. .|... +++....... .+. .+..... ..+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~----~~~------~~~~~~~Dl~d~~~~~~~ 61 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-----EVVVV----DNLSSGRREF----VNP------SAELHVRDLKDYSWGAGI 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----CCCSSCCGGG----SCT------TSEEECCCTTSTTTTTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-----EEEEE----eCCCCCchhh----cCC------CceEEECccccHHHHhhc
Confidence 5899999999999999999999874 24332 2222111100 000 1111111 23455
Q ss_pred CCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH----HHHHHCCCCCccee
Q 013466 171 EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAPSIPAKNF 244 (442)
Q Consensus 171 ~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~----~~~k~s~~~p~kvi 244 (442)
++ |+||.+++.+... ..+....+..|..-...+.+.+.+. +. ..++.+|--. +... .+.+..+ .++...
T Consensus 62 ~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~iv~~SS~~-vyg~~~~~~~~e~~~-~~p~~~ 136 (312)
T 3ko8_A 62 KG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GV-RTVVFASSST-VYGDADVIPTPEEEP-YKPISV 136 (312)
T ss_dssp CC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TC-CEEEEEEEGG-GGCSCSSSSBCTTSC-CCCCSH
T ss_pred CC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEeCcHH-HhCCCCCCCCCCCCC-CCCCCh
Confidence 66 9999998854321 2234556778888888888888775 22 3555555311 0000 0000010 111111
Q ss_pred eccchhhHHHHHHHHHHHhCCCcCcccceEEEeec
Q 013466 245 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (442)
Q Consensus 245 g~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H 279 (442)
-..+-....++-..++...|+...-++...|+|..
T Consensus 137 Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~ 171 (312)
T 3ko8_A 137 YGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcC
Confidence 11122223344445566678777666655677854
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.016 Score=58.36 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+||||+|.+|..+...|...+. . .+.|..+...++..+. ..+. .....+..-+.++++++|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~-p---~~el~~~as~~saG~~----~~~~------~~~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARSAGKS----LKFK------DQDITIEETTETAFEGVDI 67 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCC-C---EEEEEEEECTTTTTCE----EEET------TEEEEEEECCTTTTTTCSE
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCC-C---cEEEEEEEccccCCCc----ceec------CCCceEeeCCHHHhcCCCE
Confidence 46999999999999999998888642 1 1445544433322211 1111 0133443334567899999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||++.|
T Consensus 68 vf~a~~ 73 (366)
T 3pwk_A 68 ALFSAG 73 (366)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 999765
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.01 Score=57.81 Aligned_cols=116 Identities=11% Similarity=0.064 Sum_probs=63.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc-------
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP------- 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~------- 166 (442)
.+++||.|+||+|.||++++..|+..|.- +.+..++......... .+.... ...++.+...+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-----~~v~~~~~~~~~~~~~----~l~~~~--~~~~~~~~~~Dl~d~~~~ 90 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYET-----YKIINFDALTYSGNLN----NVKSIQ--DHPNYYFVKGEIQNGELL 90 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTT-----EEEEEEECCCTTCCGG----GGTTTT--TCTTEEEEECCTTCHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCC-----cEEEEEeccccccchh----hhhhhc--cCCCeEEEEcCCCCHHHH
Confidence 34679999999999999999999998731 2222221111011111 111111 00123332211
Q ss_pred ccccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ~eal~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++++ +|+||.+++..... ..+..+.+..|+.-...+.+.+.+. +. ..+|.+|
T Consensus 91 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~-~~~v~~S 148 (346)
T 4egb_A 91 EHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PH-IKLVQVS 148 (346)
T ss_dssp HHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TT-SEEEEEE
T ss_pred HHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CC-CEEEEeC
Confidence 234555 99999998854321 1234556788888888888888875 23 3455555
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.03 Score=51.63 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e----- 168 (442)
++|.|+||+|+||.+++..|+..|. .+.+. .+++.+.++....++.... . .-.. +..| +.+
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~-----~v~~~---~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~ 70 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGF-----ALAIH---YGQNREKAEEVAEEARRRG-S--PLVAVLGANLLEAEAATAL 70 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT-C--SCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC-C--ceEEEEeccCCCHHHHHHH
Confidence 5799999999999999999999774 24332 1344455554544443221 1 0111 2222 111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 ------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+.|+||..+|...... .+ -...+..|..- .+.+.+.+.+. ..+.|++++..
T Consensus 71 ~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~~sS~ 140 (245)
T 2ph3_A 71 VHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA--RFGRIVNITSV 140 (245)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc--CCCEEEEEeCh
Confidence 1357899999988653211 11 22345555444 55566666553 35778888764
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=53.99 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecCcccc---c-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYEL---F- 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~~~ea---l- 170 (442)
|++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++ .+..|+.+.. ...+. +
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~D~~~~~-----------~~~~~~~~~~ 60 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGH-----TVIGI----DRGQADIEADLSTPGGRET-----------AVAAVLDRCG 60 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSSSSEECCTTSHHHHHH-----------HHHHHHHHHT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCC-----EEEEE----eCChhHccccccCCcccHH-----------HHHHHHHHcC
Confidence 45899999999999999999999774 24442 22222111 0222332211 00111 2
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhh--CCCeEEEEeCC
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGN 223 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a--~p~a~vivvtN 223 (442)
.+.|+||..+|.... ...-...+..|..-...+.+.+.+.. ...+.+++++.
T Consensus 61 ~~~d~vi~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS 114 (255)
T 2dkn_A 61 GVLDGLVCCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS 114 (255)
T ss_dssp TCCSEEEECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred CCccEEEECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence 479999999886531 12234456666554444444333321 13466777764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.063 Score=50.83 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++... .| +.+
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~ 97 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKS-----KLVLW----DINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYS 97 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----EcCHHHHHHHHHHHHhcC----CeEEEEEeeCCCHHHHHH
Confidence 46899999999999999999999874 24442 445555555555554321 122221 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCCC---c---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRGPGM---E---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg~---~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+.|+||..+|....... + -...+..|..- .+.+.+.+.+. ..+.||+++..
T Consensus 98 ~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 168 (272)
T 1yb1_A 98 SAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASA 168 (272)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred HHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEech
Confidence 13478999999886532111 1 12344555443 44455555542 45777777754
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.013 Score=57.04 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=42.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||++|| .|.+|..++..|+..|. ++.. + |++.++++. |.+ ...+...+..++++++|+|
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~----l~~------~G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGY-----ELVV--W--NRTASKAEP----LTK------LGATVVENAIDAITPGGIV 65 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--C---------CT----TTT------TTCEECSSGGGGCCTTCEE
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHH----HHH------cCCeEeCCHHHHHhcCCce
Confidence 3899999 69999999999999885 2444 3 555454431 221 1234556678899999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 66 i~~l~ 70 (297)
T 4gbj_A 66 FSVLA 70 (297)
T ss_dssp EECCS
T ss_pred eeecc
Confidence 98743
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0071 Score=60.28 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~ 167 (442)
+|+||.|+||+|.||++++..|+..|. .|.+. +++...... +.. . .+.+ ..| ..
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~----~~~---~---~v~~~~~Dl~d~~~~~ 88 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH-----YVIAS----DWKKNEHMT----EDM---F---CDEFHLVDLRVMENCL 88 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCCSSSC----GGG---T---CSEEEECCTTSHHHHH
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC-----eEEEE----ECCCccchh----hcc---C---CceEEECCCCCHHHHH
Confidence 467999999999999999999998773 24432 222221110 000 0 1111 111 13
Q ss_pred cccCCCcEEEEeCCcCCCC---CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kp---g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+++..... ..+..+.+..|..-...+.+.+.+. +. ..||.++-
T Consensus 89 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~-~~~V~~SS 145 (379)
T 2c5a_A 89 KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GI-KRFFYASS 145 (379)
T ss_dssp HHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TC-SEEEEEEE
T ss_pred HHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEee
Confidence 5678999999998854321 2244566778888888888888774 22 25555553
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.05 Score=50.35 Aligned_cols=114 Identities=10% Similarity=-0.057 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----c
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----L 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e----a 169 (442)
++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++... ...++... .| +.+ .
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~ 70 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGD-----RVAAL----DLSAETLEETARTHWHA---YADKVLRVRADVADEGDVNAA 70 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHSTT---TGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHH
Confidence 4789999999999999999999874 24442 45555565555544111 11123221 11 122 2
Q ss_pred c-------CCCcEEEEeCCcCCCCC------Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 F-------EDAEWALLIGAKPRGPG------ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 l-------~dADiVIi~ag~~~kpg------~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+ .+.|+||..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.|++++..
T Consensus 71 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 143 (250)
T 2cfc_A 71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ--GAGVIVNIASV 143 (250)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 2 37899999988643211 11 1233445543 334555555553 35777777753
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.054 Score=50.42 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++.. ..| +.+
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 79 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAGA-----RVIIA----DLDEAMATKAVEDLRMEG----HDVSSVVMDVTNTESVQN 79 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 46899999999999999999999874 25442 445555555555554221 12222 111 112
Q ss_pred cc-------CCCcEEEEeCCcCC--CC--CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LF-------EDAEWALLIGAKPR--GP--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al-------~dADiVIi~ag~~~--kp--g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ ...|+||..+|... .+ ..+. ...+..|..- ++...+.+.+. ..+.|++++..
T Consensus 80 ~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~iv~~sS~ 151 (260)
T 3awd_A 80 AVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ--KQGVIVAIGSM 151 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEecc
Confidence 22 37899999988643 22 1121 2345555443 33344444442 45777777754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0046 Score=57.40 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~~ 167 (442)
.|++|.|+||+|.||.+++..|+..|-+ .|.+. +++.+.+.. +. . ..+.+. .| ..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~----~V~~~----~R~~~~~~~----~~----~--~~~~~~~~Dl~d~~~~~ 83 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTI----KQTLF----ARQPAKIHK----PY----P--TNSQIIMGDVLNHAALK 83 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTE----EEEEE----ESSGGGSCS----SC----C--TTEEEEECCTTCHHHHH
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCc----eEEEE----EcChhhhcc----cc----c--CCcEEEEecCCCHHHHH
Confidence 3568999999999999999999987721 24442 333333221 00 0 122221 11 13
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+++... .+ ...+.+.+.+.+. .-..||+++-
T Consensus 84 ~~~~~~D~vv~~a~~~~------~~------~~~~~~~~~~~~~--~~~~iV~iSS 125 (236)
T 3qvo_A 84 QAMQGQDIVYANLTGED------LD------IQANSVIAAMKAC--DVKRLIFVLS 125 (236)
T ss_dssp HHHTTCSEEEEECCSTT------HH------HHHHHHHHHHHHT--TCCEEEEECC
T ss_pred HHhcCCCEEEEcCCCCc------hh------HHHHHHHHHHHHc--CCCEEEEEec
Confidence 56889999998877321 11 1133556666663 2346666664
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.002 Score=62.96 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEecccc-chhhhHHHHHHHHhcccCCCcccEEE-ecC--c--
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKI-GIN--P-- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~--~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~-- 166 (442)
.|+||.|+||+|.||++++..|+.. +. .|.......+ .+.+.+. ++.+ .++.+ ..| +
T Consensus 3 ~m~~vlVTGatG~iG~~l~~~L~~~~~g~-----~V~~~~r~~~~~~~~~~~----~~~~------~~~~~~~~Dl~d~~ 67 (348)
T 1oc2_A 3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDV-----HVTVLDKLTYAGNKANLE----AILG------DRVELVVGDIADAE 67 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTC-----EEEEEECCCTTCCGGGTG----GGCS------SSEEEEECCTTCHH
T ss_pred cCcEEEEeCCccHHHHHHHHHHHHhCCCC-----EEEEEeCCCCCCChhHHh----hhcc------CCeEEEECCCCCHH
Confidence 3679999999999999999999987 42 2433221110 0111111 1110 12222 111 1
Q ss_pred --ccccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 --YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 --~eal~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.++++++|+||.+++..... ..+..+.+..|..-...+.+.+.+. + +.|+.+|
T Consensus 68 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~--~~~v~~S 124 (348)
T 1oc2_A 68 LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D--IRFHHVS 124 (348)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred HHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEec
Confidence 35678999999998854310 0122456778888888888888775 2 3666665
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.013 Score=58.38 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---- 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---- 171 (442)
.+||+||| .|.+|.+++..|...|. +|.++ |++.+.++. +.++ . +....+..++++
T Consensus 8 ~~kIgIIG-~G~mG~slA~~L~~~G~-----~V~~~----dr~~~~~~~-a~~~-----G----~~~~~~~~e~~~~a~~ 67 (341)
T 3ktd_A 8 SRPVCILG-LGLIGGSLLRDLHAANH-----SVFGY----NRSRSGAKS-AVDE-----G----FDVSADLEATLQRAAA 67 (341)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----CSCHHHHHH-HHHT-----T----CCEESCHHHHHHHHHH
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHH-HHHc-----C----CeeeCCHHHHHHhccc
Confidence 46999999 59999999999999873 35553 455555442 2222 1 122344445554
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||+||++.. ...+.++.+.+..+ .|+++|+.++.
T Consensus 68 ~aDlVilavP----------------~~~~~~vl~~l~~~-~~~~iv~Dv~S 102 (341)
T 3ktd_A 68 EDALIVLAVP----------------MTAIDSLLDAVHTH-APNNGFTDVVS 102 (341)
T ss_dssp TTCEEEECSC----------------HHHHHHHHHHHHHH-CTTCCEEECCS
T ss_pred CCCEEEEeCC----------------HHHHHHHHHHHHcc-CCCCEEEEcCC
Confidence 5799999843 12344444555555 47887776664
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=60.33 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~e 168 (442)
|+||.|+||+|.||++++..|+..|. .|... +++..... ..+. . ++.. ..| + .+
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~---~~~~----~---~~~~~~~D~~~~~~~~~ 61 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGL-----SVVVV----DNLQTGHE---DAIT----E---GAKFYNGDLRDKAFLRD 61 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECCSSCCG---GGSC----T---TSEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----EEEEE----eCCCcCch---hhcC----C---CcEEEECCCCCHHHHHH
Confidence 57999999999999999999998773 24332 22111110 0111 0 1111 111 1 23
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++ ++|+||.+++..... ..+..+.+..|..-...+.+.+.+. + -..+|.+|-
T Consensus 62 ~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~~v~~Ss 118 (330)
T 2c20_A 62 VFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-K-VDKFIFSST 118 (330)
T ss_dssp HHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEECC
T ss_pred HHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-C-CCEEEEeCC
Confidence 455 899999998854211 0133456778888888888887764 2 235666664
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.039 Score=54.93 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc---hhhhHHHHHHHHhcccCCCcccEEEecC-ccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---SLQALEGVAMELEDSLFPLLREVKIGIN-PYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~---~~~~l~g~a~DL~~~~~~~~~~v~i~~~-~~eal 170 (442)
.|+||+|+||+|.+|..++..|...+.+ .+..+.... +..+. ..|. +-.+....+..+..- +.+++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~------el~~l~s~~~~~saGk~---~~~~-~p~~~~~~~~~v~~~~~~~~~ 72 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHM------NITALTVSAQSNDAGKL---ISDL-HPQLKGIVELPLQPMSDISEF 72 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTE------EEEEEEEETTCTTTTSB---HHHH-CGGGTTTCCCBEEEESSGGGT
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCC------cEEEEEecCchhhcCCc---hHHh-CccccCccceeEeccCCHHHH
Confidence 4689999999999999999998885542 333332222 11111 1111 000000012233221 34556
Q ss_pred -CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 171 -EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 171 -~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+++|+||++.+ ...-+++++.+.+ .++++|-.|.+-
T Consensus 73 ~~~~Dvvf~a~p----------------~~~s~~~~~~~~~---~g~~vIDlSa~f 109 (337)
T 3dr3_A 73 SPGVDVVFLATA----------------HEVSHDLAPQFLE---AGCVVFDLSGAF 109 (337)
T ss_dssp CTTCSEEEECSC----------------HHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred hcCCCEEEECCC----------------hHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence 89999999866 2334555555444 367888888763
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0031 Score=60.81 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=63.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c---
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~--- 166 (442)
..++++|.|+||+|.||++++..|+..|. .|.+. +++... .. + ++.+ ..| +
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~----~r~~~~-~~----l---------~~~~~~~Dl~d~~~ 65 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV-----EVFGT----SRNNEA-KL----P---------NVEMISLDIMDSQR 65 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCTTC-CC----T---------TEEEEECCTTCHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC-----EEEEE----ecCCcc-cc----c---------eeeEEECCCCCHHH
Confidence 34578999999999999999999998774 24442 222221 10 1 1111 111 1
Q ss_pred -ccccCC--CcEEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -YELFED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -~eal~d--ADiVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+++++ .|+||.+++.... ...+..+.+..|..-...+.+.+.+. +....||.+|-
T Consensus 66 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS 126 (321)
T 2pk3_A 66 VKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDS-NLDCRILTIGS 126 (321)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEEEE
T ss_pred HHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcc
Confidence 234444 8999999885431 11234567788888888888888664 23456666664
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.041 Score=51.90 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... + ..++.. ..| +.+.
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~v~~ 81 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGA-----KLSLV----DVSSEGLEASKAAVLETA-P-DAEVLTTVADVSDEAQVEA 81 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHC-T-TCCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C-CceEEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 25442 455566665555554321 0 012222 112 1221
Q ss_pred --------cCCCcEEEEeCCcCCC--CC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPRG--PG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~k--pg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|++|..+|.... +- .+. ...+..|. .+.+.+.+.+.+. ..+.|++++-.
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 153 (267)
T 1iy8_A 82 YVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASV 153 (267)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcch
Confidence 2368999999886532 21 121 23445554 3455666666653 35677777754
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0045 Score=60.41 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----c
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----Y 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~ 167 (442)
+++||.|+||+|.||++++..|+..|. .|.+. +++..... ..+.+ + .++.+ ..| + .
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~---~~l~~----~-~~~~~~~~Dl~d~~~~~ 82 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGD-----KVVGI----DNFATGRR---EHLKD----H-PNLTFVEGSIADHALVN 82 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECCSSCCG---GGSCC----C-TTEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-----EEEEE----ECCCccch---hhHhh----c-CCceEEEEeCCCHHHHH
Confidence 467999999999999999999998773 24332 22211100 00111 0 12222 111 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++++ +|+||.+++....+.....+ +..|..-...+.+.+.+. + -..||+++-
T Consensus 83 ~~~~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~-~-~~~iV~~SS 137 (333)
T 2q1w_A 83 QLIGDLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKN-N-VGRFVYFQT 137 (333)
T ss_dssp HHHHHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHT-T-CSEEEEEEE
T ss_pred HHHhccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHh-C-CCEEEEECc
Confidence 34566 99999998864322222233 777888888888877773 2 345666553
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.014 Score=57.67 Aligned_cols=108 Identities=9% Similarity=0.061 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC---c---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P--- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~---~--- 166 (442)
+|+||.|+||+|.||++++..|+.. +. .|... +++.+.+.. +... ..+.+. .| +
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~~----~r~~~~~~~----~~~~-----~~v~~~~~Dl~~d~~~ 84 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDW-----EVFGM----DMQTDRLGD----LVKH-----ERMHFFEGDITINKEW 84 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSC-----EEEEE----ESCCTTTGG----GGGS-----TTEEEEECCTTTCHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCC-----EEEEE----eCChhhhhh----hccC-----CCeEEEeCccCCCHHH
Confidence 3679999999999999999999987 53 24332 333222211 1110 122221 11 1
Q ss_pred -ccccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -~eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++++|+||.+|+...... .+..+.+..|+.-...+.+.+.+. + ..+|.+|-
T Consensus 85 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~--~~~v~~SS 141 (372)
T 3slg_A 85 VEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 141 (372)
T ss_dssp HHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T--CEEEEECC
T ss_pred HHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C--CcEEEeCc
Confidence 235778999999887543111 133456677877778888888775 3 56777765
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.017 Score=54.64 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----~e 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++... +. +..| + .+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~ 70 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGA-----KVVFG----DILDEEGKAMAAELADA-------ARYVHLDVTQPAQWKA 70 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHTGGG-------EEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhcC-------ceEEEecCCCHHHHHH
Confidence 35799999999999999999999874 25442 44555555554444321 11 1111 1 12
Q ss_pred cc-------CCCcEEEEeCCcCCCC---CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LF-------EDAEWALLIGAKPRGP---GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al-------~dADiVIi~ag~~~kp---g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ ...|++|..+|..... ..+. ...+..|.. +.+.+.+.+.+. ..+.|++++.-
T Consensus 71 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 141 (260)
T 1nff_A 71 AVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSI 141 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEeeh
Confidence 23 3799999998864321 1221 234555543 335556666653 35778887754
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.041 Score=50.83 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.. +++.+.++....++.... .++.. ..| +.+.
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G~-----~V~~~~---~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 72 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMGA-----NIVLNG---SPASTSLDATAEEFKAAG----INVVVAKGDVKNPEDVEN 72 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEEE---CTTCSHHHHHHHHHHHTT----CCEEEEESCTTSHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-----EEEEEc---CcCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 244421 233344444444443221 12222 111 2222
Q ss_pred --------cCCCcEEEEeCCcCCCC------CCcHHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPRGP------GMERAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~kp------g~~r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+.|+||..+|..... ..+-...+..|..- .+.+.+.+.+. ..+.|++++..
T Consensus 73 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 143 (247)
T 2hq1_A 73 MVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ--KSGKIINITSI 143 (247)
T ss_dssp HHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECC-
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 23789999998864311 11123445556544 44444444443 45778887764
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.058 Score=51.26 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.... . ++.. ..| +.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 70 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA-----KILL----GARRQARIEAIATEIRDAG-G---TALAQVLDVTDRHSVAA 70 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEcCCCCHHHHHH
Confidence 35789999999999999999999884 2544 2566677777777665332 1 2221 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 141 (264)
T 3tfo_A 71 FAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ--RSGQIINIGSI 141 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEEcCH
Confidence 22347899999988643211 121 223445533 345555666553 46788887754
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=62.19 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCC-CCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLG-PDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~-~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+|+||+|+||+|.+|..++..|...+.|. . .+.+..+...++..+. .+-.+..+.....+.+..-+.++++++
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~--~~ei~~l~s~~~agk~----~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADG--RLRIGALTAATSAGST----LGEHHPHLTPLAHRVVEPTEAAVLGGH 81 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTT--SEEEEEEEESSCTTSB----GGGTCTTCGGGTTCBCEECCHHHHTTC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCc--cEEEEEEECCCcCCCc----hhhhcccccccceeeeccCCHHHhcCC
Confidence 46799999999999999999998766000 0 1333333222221110 110010000001122222235668899
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|+||++.|... -+++++.+ + .++++|..|.+.
T Consensus 82 DvVf~alg~~~----------------s~~~~~~~-~---~G~~vIDlSa~~ 113 (352)
T 2nqt_A 82 DAVFLALPHGH----------------SAVLAQQL-S---PETLIIDCGADF 113 (352)
T ss_dssp SEEEECCTTSC----------------CHHHHHHS-C---TTSEEEECSSTT
T ss_pred CEEEECCCCcc----------------hHHHHHHH-h---CCCEEEEECCCc
Confidence 99999866321 23445444 3 246888888885
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.06 Score=49.85 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ec--Ccc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~--~~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++....++.....+. ..+.. .. .+.
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~-~~~~~~d~d~~~~~~~~~ 83 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGA-----SVVL----LGRTEASLAEVSDQIKSAGQPQ-PLIIALNLENATAQQYRE 83 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTSCC-CEEEECCTTTCCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EecCHHHHHHHHHHHHhcCCCC-ceEEEeccccCCHHHHHH
Confidence 45899999999999999999999884 2544 2556666666666564332110 11111 11 111
Q ss_pred ------cccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|... .+- .+. ...+..|.. +++.+.+.+.+ ...+.|++++-.
T Consensus 84 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~~~iv~isS~ 155 (247)
T 3i1j_A 84 LAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKR--SEDASIAFTSSS 155 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SSSEEEEEECCG
T ss_pred HHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--CCCCeEEEEcch
Confidence 12347899999988632 221 121 233445533 34444454454 246788887754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.014 Score=55.99 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=51.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
+||.|+||+|.||++++..|+..|. .|.. + +++...-.-+..|+.+. ....++++ ++|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~Dl~d~-----------~~~~~~~~~~~~d 62 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNW-----HAVG--C--GFRRARPKFEQVNLLDS-----------NAVHHIIHDFQPH 62 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEE--E--C-----------------------------CHHHHHHHCCS
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCC-----eEEE--E--ccCCCCCCeEEecCCCH-----------HHHHHHHHhhCCC
Confidence 5899999999999999999998773 2433 2 22211100122233221 12234555 489
Q ss_pred EEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||.++|..... ..+..+.+..|..-...+.+.+.+. + +.++.++-
T Consensus 63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~SS 110 (315)
T 2ydy_A 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-G--AFLIYISS 110 (315)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHHH-T--CEEEEEEE
T ss_pred EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEch
Confidence 999998854311 1233456677888888888887774 2 36666663
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0027 Score=59.89 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c------Cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I------NPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~------~~~e 168 (442)
|+||.|+||+|.||++++..|+..|. .|.+ + +++.... +. . .+.+. . ...+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~------~~----~---~~~~~~~Dl~d~~~~~~ 59 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAH-----EVRL--S--DIVDLGA------AE----A---HEEIVACDLADAQAVHD 59 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEE-----EEEE--C--CSSCCCC------CC----T---TEEECCCCTTCHHHHHH
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCCCccc------cC----C---CccEEEccCCCHHHHHH
Confidence 35899999999999999999998763 2333 2 3322211 00 0 11111 1 1235
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++.|+||.+++.. +..+..+.+..|..-...+.+.+.+. .-..|++++
T Consensus 60 ~~~~~d~vi~~a~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~S 109 (267)
T 3ay3_A 60 LVKDCDGIIHLGGVS--VERPWNDILQANIIGAYNLYEAARNL--GKPRIVFAS 109 (267)
T ss_dssp HHTTCSEEEECCSCC--SCCCHHHHHHHTHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred HHcCCCEEEECCcCC--CCCCHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEeC
Confidence 678899999998864 22334556778888888888887763 234566555
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.017 Score=53.32 Aligned_cols=45 Identities=27% Similarity=0.196 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
|++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~ 45 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGK-----ATYLT----GRSESKLSTVTNCL 45 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTC-----CEEEE----ESCHHHHHHHHHTC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHH
Confidence 34699999999999999999999884 25552 55666666555444
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.06 Score=49.52 Aligned_cols=77 Identities=26% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
+++|.|+||+|+||.+++..|+..|. .+.+ .+++.++++..+.++.... . .++.. ..| +.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~~ 69 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY-----ALAL----GARSVDRLEKIAHELMQEQ-G--VEVFYHHLDVSKAESVEE 69 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhc-C--CeEEEEEeccCCHHHHHH
Confidence 45789999999999999999999884 2555 2556667776666664221 1 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCC
Q 013466 168 ------ELFEDAEWALLIGAKPR 184 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~ 184 (442)
+.+...|++|..+|...
T Consensus 70 ~~~~~~~~~g~id~li~~Ag~~~ 92 (235)
T 3l77_A 70 FSKKVLERFGDVDVVVANAGLGY 92 (235)
T ss_dssp HCC-HHHHHSSCSEEEECCCCCC
T ss_pred HHHHHHHhcCCCCEEEECCcccc
Confidence 12237899999988643
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.017 Score=56.68 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--CcccccC--
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFE-- 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~-- 171 (442)
.+||.|+||+|.||++++..|+..|.. .|.+. +++..... ..++... .. ...+.. ...+.++
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~----~V~~~----~r~~~~~~--~~~~~~~--~~--~~d~~~~~~~~~~~~~~ 111 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGIT----DILVV----DNLKDGTK--FVNLVDL--NI--ADYMDKEDFLIQIMAGE 111 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCC----CEEEE----ECCSSGGG--GGGTTTS--CC--SEEEEHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCc----EEEEE----ecCCCcch--hhcccCc--eE--eeecCcHHHHHHHHhhc
Confidence 368999999999999999999998732 24442 22211110 0011111 00 111211 1122343
Q ss_pred ---CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 ---DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 ---dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+++.......+..+.+..|+.-...+.+.+.+. +. .||.++-
T Consensus 112 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~--r~V~~SS 163 (357)
T 2x6t_A 112 EFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYASS 163 (357)
T ss_dssp CCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEEE
T ss_pred ccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEcc
Confidence 5999999988654323345667888988888888888875 33 5665553
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.018 Score=55.10 Aligned_cols=111 Identities=9% Similarity=0.002 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.. ++. +..| +
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~~ 90 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGA-----YVVVA----DVNEDAAVRVANEIGS-------KAFGVRVDVSSAKDAES 90 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHCT-------TEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCC-------ceEEEEecCCCHHHHHH
Confidence 45788999999999999999999885 25442 5555666655554321 111 1111 1
Q ss_pred -----ccccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..||.... + ..+. ...+..|.. +.+.+.+.+.+. ..+.|++++-.
T Consensus 91 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 161 (277)
T 4dqx_A 91 MVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN--GGGSIINTTSY 161 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 1223478999999886432 1 1121 234455543 344455555542 46788888754
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.015 Score=58.04 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
+|+||+|+||+|.||..++..|...+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p 28 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHP 28 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999988654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.021 Score=57.74 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh---hHHHHHHHHhcccC-----CCcccEEEe-cC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLF-----PLLREVKIG-IN 165 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~---~l~g~a~DL~~~~~-----~~~~~v~i~-~~ 165 (442)
.+++|.|+||+|.||++++..|...+. .|.+. .++.. .++.+...|..... ....++.+. .|
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~D 138 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYSH-----RIYCF----IRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGD 138 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTEE-----EEEEE----EECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEEC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCCC-----EEEEE----ECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCC
Confidence 357999999999999999999976553 24332 22222 22322222221100 000122221 11
Q ss_pred c-----ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 166 P-----YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 166 ~-----~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
. .+++.++|+||.+|+.... ..+..+.+..|+.-...+++.+.+ . ...++.++
T Consensus 139 l~d~~~l~~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~-~--~~~~v~~S 196 (427)
T 4f6c_A 139 FECMDDVVLPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVS 196 (427)
T ss_dssp C---CCCCCSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T--TCEEEEEE
T ss_pred CCCcccCCCcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh-c--CCcEEEEC
Confidence 1 1167799999999886532 234455678888888888888777 2 34555554
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.056 Score=52.20 Aligned_cols=116 Identities=15% Similarity=0.056 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.+
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-----RLVL----SDVDQPALEQAVNGLRGQG----FDAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHH
Confidence 35899999999999999999999884 2545 3566677776666665321 12222 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 169 -------LFEDAEWALLIGAKPRG-P--GME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p--g~~---r~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+...|++|..+|.... + ..+ -...+..|. .+++...+.+.+. +..+.|++++.-.
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~~ 170 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQ-GTGGHIAFTASFA 170 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECCGG
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCcEEEEeCchh
Confidence 12378999999886532 1 111 123445553 3445555555553 3467888887543
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.023 Score=54.21 Aligned_cols=109 Identities=17% Similarity=0.067 Sum_probs=64.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccC----
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFE---- 171 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~---- 171 (442)
||.|+||+|.||++++..|+..|.. .|...... ....... ++.... . ...+. ....+.++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~----~V~~~~r~--~~~~~~~----~~~~~~--~--~~d~~~~~~~~~~~~~~~~ 66 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT----DILVVDNL--KDGTKFV----NLVDLN--I--ADYMDKEDFLIQIMAGEEF 66 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC----CEEEEECC--SSGGGGH----HHHTSC--C--SEEEEHHHHHHHHHTTCCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc----EEEEEccC--CCCchhh----hcCcce--e--ccccccHHHHHHHHhcccc
Confidence 5899999999999999999987731 24442211 1111111 111110 1 11221 11123444
Q ss_pred -CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 172 -DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 172 -dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++|+||.+++.......+..+.+..|..-...+.+.+.+. +. .++.+|-
T Consensus 67 ~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~--~~v~~SS 116 (310)
T 1eq2_A 67 GDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI--PFLYASS 116 (310)
T ss_dssp SSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC--CEEEEEE
T ss_pred CCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEee
Confidence 4999999988654323345667788988888898888875 33 5666653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.076 Score=47.08 Aligned_cols=134 Identities=11% Similarity=-0.008 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cC---cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~---~~ea 169 (442)
..||.|+|+ |.+|..++..|... |. ++.+. |+++++++... +. .. .+... ++ ..++
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~-----~V~vi----d~~~~~~~~~~-~~--g~-----~~~~gd~~~~~~l~~~ 100 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGK-----ISLGI----EIREEAAQQHR-SE--GR-----NVISGDATDPDFWERI 100 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCS-----CEEEE----ESCHHHHHHHH-HT--TC-----CEEECCTTCHHHHHTB
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCC-----eEEEE----ECCHHHHHHHH-HC--CC-----CEEEcCCCCHHHHHhc
Confidence 358999995 99999999999987 74 25553 55555554321 11 11 12111 11 1233
Q ss_pred --cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeecc
Q 013466 170 --FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247 (442)
Q Consensus 170 --l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~g 247 (442)
+.++|+||++.+. ...|.. ++..+++. +|+..++..+|-.+.. ..+.+ .| .+ .++ ..
T Consensus 101 ~~~~~ad~vi~~~~~-----------~~~~~~----~~~~~~~~-~~~~~ii~~~~~~~~~-~~l~~-~G-~~-~vi-~p 159 (183)
T 3c85_A 101 LDTGHVKLVLLAMPH-----------HQGNQT----ALEQLQRR-NYKGQIAAIAEYPDQL-EGLLE-SG-VD-AAF-NI 159 (183)
T ss_dssp CSCCCCCEEEECCSS-----------HHHHHH----HHHHHHHT-TCCSEEEEEESSHHHH-HHHHH-HT-CS-EEE-EH
T ss_pred cCCCCCCEEEEeCCC-----------hHHHHH----HHHHHHHH-CCCCEEEEEECCHHHH-HHHHH-cC-CC-EEE-ch
Confidence 7899999997541 122322 33344554 4677666665533322 23333 32 31 233 33
Q ss_pred chhhHHHHHHHHHHHhCCCcC
Q 013466 248 TRLDENRAKCQLALKAGVFYD 268 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~ 268 (442)
...-..++...+...++.+..
T Consensus 160 ~~~~a~~l~~~~~~~~~~~~~ 180 (183)
T 3c85_A 160 YSEAGSGFARHVCKQLEPQFT 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCccc
Confidence 333344555555566665443
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.02 Score=57.50 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=44.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH-hcccCC-CcccEEEecCcccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-EDSLFP-LLREVKIGINPYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL-~~~~~~-~~~~v~i~~~~~eal~ 171 (442)
.+++||+|+||+|.+|..+...|...+. +.|..+...++..+.-....-. .|...+ ...+..+..-+.+++.
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (359)
T 4dpk_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMD 78 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCT
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhc
Confidence 3568999999999999999998877553 3444443333222111110000 000000 0012222223456789
Q ss_pred CCcEEEEeCC
Q 013466 172 DAEWALLIGA 181 (442)
Q Consensus 172 dADiVIi~ag 181 (442)
++|+||++.+
T Consensus 79 ~vDvvf~a~p 88 (359)
T 4dpk_A 79 DVDIIFSPLP 88 (359)
T ss_dssp TCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 9999999865
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.02 Score=57.50 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=44.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH-hcccCC-CcccEEEecCcccccC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-EDSLFP-LLREVKIGINPYELFE 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL-~~~~~~-~~~~v~i~~~~~eal~ 171 (442)
.+++||+|+||+|.+|..+...|...+. +.|..+...++..+.-....-. .|...+ ...+..+..-+.+++.
T Consensus 5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~------~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (359)
T 4dpl_A 5 RRTLKAAILGATGLVGIEYVRMLSNHPY------IKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMD 78 (359)
T ss_dssp -CCEEEEETTTTSTTHHHHHHHHTTCSS------EEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCT
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC------ceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhc
Confidence 3568999999999999999998877553 3444443333222111110000 000000 0012222223456789
Q ss_pred CCcEEEEeCC
Q 013466 172 DAEWALLIGA 181 (442)
Q Consensus 172 dADiVIi~ag 181 (442)
++|+||++.+
T Consensus 79 ~vDvvf~a~p 88 (359)
T 4dpl_A 79 DVDIIFSPLP 88 (359)
T ss_dssp TCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 9999999855
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0099 Score=55.42 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P---- 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~---- 166 (442)
.+..+|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++....++.+. +.+ ..| +
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~ 75 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGS-----KVII----SGSNEEKLKSLGNALKDN-------YTIEVCNLANKEEC 75 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCSS-------EEEEECCTTSHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhccC-------ccEEEcCCCCHHHH
Confidence 3457899999999999999999999884 2544 255666666665555321 111 111 1
Q ss_pred ---ccccCCCcEEEEeCCcCCC-C-----CCcHHhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ---YELFEDAEWALLIGAKPRG-P-----GMERAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~k-p-----g~~r~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+...|++|..+|.... + ..+-...+..|. .+.+...+.+.+. ..+.|++++-..
T Consensus 76 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~ 145 (249)
T 3f9i_A 76 SNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK--RYGRIINISSIV 145 (249)
T ss_dssp HHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCC
T ss_pred HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEEccHH
Confidence 1223478999999885431 1 112233455553 3444455555553 467888887643
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.065 Score=51.09 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc--
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY-- 167 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~-- 167 (442)
+.+.+++.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++... .| +.
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~ 87 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI-----AVYG----CARDAKNVSAAVDGLRAAG----HDVDGSSCDVTSTDE 87 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHH
Confidence 34456899999999999999999999884 2444 3556677776766665321 122221 11 11
Q ss_pred ---------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHH------HHhhhCCCeEEEEeCCc
Q 013466 168 ---------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKA------LNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ---------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~------I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|..-...+.+. +.+. ..+.||+++-.
T Consensus 88 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--~~g~iV~isS~ 163 (279)
T 3sju_A 88 VHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREA--GWGRIVNIAST 163 (279)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhc--CCcEEEEECCh
Confidence 12336899999988643211 121 23445564433333332 3332 45778888754
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.032 Score=51.56 Aligned_cols=114 Identities=15% Similarity=0.095 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... . .++.. ..| +.+
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGS-----TVIIT----GTSGERAKAVAEEIANKY-G--VKAHGVEMNLLSEESINK 74 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHHHhhc-C--CceEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 24442 445555555544443211 1 11221 111 111
Q ss_pred c-------cCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHH----HHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 L-------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 a-------l~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii----~~i~~~I~~~a~p~a~vivvtN 223 (442)
. +.+.|+||..+|...... .+ -.+.+..|..-. +.+.+.+.+. ..+.|++++.
T Consensus 75 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~~sS 144 (248)
T 2pnf_A 75 AFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ--RWGRIVNISS 144 (248)
T ss_dssp HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 2 237999999988653211 11 223455564443 4444555443 3567777775
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.018 Score=55.75 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~e 168 (442)
.|||.|+||+|.||++++..|+..+. +. .|..... .......+.. .++.. ..++... .| + .+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~-~~--~V~~~~r--~~~~~~~~~~-~~~~~-----~~~~~~~~~Dl~d~~~~~~ 71 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHP-DW--EVINIDK--LGYGSNPANL-KDLED-----DPRYTFVKGDVADYELVKE 71 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCT-TC--EEEEEEC--CCTTCCGGGG-TTTTT-----CTTEEEEECCTTCHHHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCC-CC--EEEEEec--CcccCchhHH-hhhcc-----CCceEEEEcCCCCHHHHHH
Confidence 36899999999999999999998752 00 2333211 1100111100 11111 1123221 11 1 23
Q ss_pred ccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++.++|+||.++|..... ..+..+.+..|..-...+.+.+.+. +....||.++
T Consensus 72 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~S 126 (336)
T 2hun_A 72 LVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVS 126 (336)
T ss_dssp HHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred HhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 457899999998854210 0123456778888888888888875 3345666666
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.1 Score=48.85 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC----cc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----PY---- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~----~~---- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++........ ..+..| +.
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~ 80 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGA-----TVIL----LGRNEEKLRQVASHINEETGRQP--QWFILDLLTCTSENCQ 80 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHHSCCC--EEEECCTTTCCHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhcCCCc--eEEEEecccCCHHHHH
Confidence 35889999999999999999999885 2555 25566666666666643221000 111111 11
Q ss_pred -------cccCCCcEEEEeCCcC--CCCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~--~kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.. ..|- .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 81 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 153 (252)
T 3f1l_A 81 QLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS--DAGSLVFTSSS 153 (252)
T ss_dssp HHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCG
T ss_pred HHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC--CCCEEEEECCh
Confidence 2234789999998863 2232 222 234555543 445555555552 46777777754
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.004 Score=60.42 Aligned_cols=114 Identities=10% Similarity=-0.085 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhH-HHHHHHHhcccCCCcccEEEe-cC--c----
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIG-IN--P---- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l-~g~a~DL~~~~~~~~~~v~i~-~~--~---- 166 (442)
.++||.|+||+|.||++++..|+..|. .|... +++.... .....++.. ..++.+. .| +
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~ 78 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGY-----RVHGL----VARRSSDTRWRLRELGI-----EGDIQYEDGDMADACSV 78 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECCCSSCCCHHHHHTTC-----GGGEEEEECCTTCHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCC-----eEEEE----eCCCccccccchhhccc-----cCceEEEECCCCCHHHH
Confidence 468999999999999999999998773 24332 2221110 001111210 0122221 11 1
Q ss_pred ccccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 YELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ~eal~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+++++ .|+||.+++..... ..+..+.+..|..-...+.+.+.+. +....++.+|-
T Consensus 79 ~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 138 (335)
T 1rpn_A 79 QRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAST 138 (335)
T ss_dssp HHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEE
T ss_pred HHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 234554 59999998854311 1234566778888888888888775 33356666654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.041 Score=54.87 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
++++||+|+||+|.+|..++..|...+
T Consensus 2 ~~~~kV~IiGAtG~iG~~llr~L~~~p 28 (350)
T 2ep5_A 2 ADKIKVSLLGSTGMVGQKMVKMLAKHP 28 (350)
T ss_dssp CCCEEEEEESCSSHHHHHHHHHHTTCS
T ss_pred CCCcEEEEECcCCHHHHHHHHHHHhCC
Confidence 346899999999999999999887654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.083 Score=49.93 Aligned_cols=116 Identities=17% Similarity=0.219 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... . .++.. ..| +.
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~~~~~v~~ 87 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGA-----RLVLS----GRDVSELDAARRALGEQF-G--TDVHTVAIDLAEPDAPAE 87 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSTTHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-C--CcEEEEEecCCCHHHHHH
Confidence 45899999999999999999999885 25552 556666666666664311 1 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. +..+.|++++--
T Consensus 88 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 159 (266)
T 4egf_A 88 LARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAA-GEGGAIITVASA 159 (266)
T ss_dssp HHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEEcch
Confidence 22347899999988653211 121 223445533 455555666654 346788888754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.067 Score=49.76 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. ++ +.+.++..+.++.... .++.. ..| +.+
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 70 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGA-----NVVVN----YAGNEQKANEVVDEIKKLG----SDAIAVRADVANAEDVT 70 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 35799999999999999999999874 24442 33 4455555555554221 12221 111 122
Q ss_pred --------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|...... .+. ...+..|..- .+.+.+.+.+. ..+.|++++--
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 142 (246)
T 2uvd_A 71 NMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ--RHGRIVNIASV 142 (246)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCH
Confidence 1237999999988653211 121 2345555443 55555666553 35778887754
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0074 Score=58.00 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+. ++.++ |++.++++.. ... .+.+..+..++++++|+|
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~-----~V~~~----~~~~~~~~~~----~~~------g~~~~~~~~~~~~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIGL-GNMGNPMAKNLMKHGY-----PLIIY----DVFPDACKEF----QDA------GEQVVSSPADVAEKADRI 60 (296)
T ss_dssp CCEEEECC-STTHHHHHHHHHHTTC-----CEEEE----CSSTHHHHHH----HTT------TCEECSSHHHHHHHCSEE
T ss_pred CeEEEEec-cHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEE
Confidence 48999995 9999999999998774 25553 4555555432 211 134445556778999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
|++.
T Consensus 61 i~~v 64 (296)
T 2gf2_A 61 ITML 64 (296)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9984
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.034 Score=56.22 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++++||+|+||+|.+|..+...|...+.
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~ 44 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPE 44 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSS
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCC
Confidence 3457999999999999999998887654
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.038 Score=54.78 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C------cc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------PY 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~------~~ 167 (442)
+++||.|+||+|.||++++..|+..|.. .|... +++..... ..+.. ..++.+.. | ..
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~----~r~~~~~~---~~l~~-----~~~v~~~~~Dl~d~~~l~ 94 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVN----QVHVV----DNLLSAEK---INVPD-----HPAVRFSETSITDDALLA 94 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCS----EEEEE----CCCTTCCG---GGSCC-----CTTEEEECSCTTCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCc----eEEEE----ECCCCCch---hhccC-----CCceEEEECCCCCHHHHH
Confidence 3579999999999999999999987721 24332 22221110 00110 01233221 1 13
Q ss_pred cccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+++..... ..+..+.+..|..-...+.+.+.+.. .-..||.++-
T Consensus 95 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~~V~~SS 151 (377)
T 2q1s_A 95 SLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFK-RLKKVVYSAA 151 (377)
T ss_dssp HCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCS-SCCEEEEEEE
T ss_pred HHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCC
Confidence 4678999999998854211 01334567788888888888776630 1225555554
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.09 Score=48.61 Aligned_cols=114 Identities=10% Similarity=0.002 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++... .++... .| +.+
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~ 71 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGA-----KVMIT----GRHSDVGEKAAKSVGTP-----DQIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhcc-----CceEEEECCCCCHHHHHH
Confidence 35899999999999999999999874 24442 44555555444444321 122221 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|...... .+ -...+..|.. +.+.+.+.+.+. +..+.|++++..
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~isS~ 143 (251)
T 1zk4_A 72 LFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSI 143 (251)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCCEEEEeCCc
Confidence 1235899999988643211 12 2335566655 445555555542 122778888754
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.21 Score=47.38 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.... ....++... .| +.+
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~~~~~v~~ 80 (281)
T 3svt_A 11 DRTYLVTGGGSGIGKGVAAGLVAAGA-----SVMI----VGRNPDKLAGAVQELEALG-ANGGAIRYEPTDITNEDETAR 80 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC-CSSCEEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHHhC-CCCceEEEEeCCCCCHHHHHH
Confidence 45899999999999999999999884 2555 2556677777777776432 111123322 22 111
Q ss_pred -------ccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+ ...+.|++++-
T Consensus 81 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~~~g~iv~isS 151 (281)
T 3svt_A 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR--GGGGSFVGISS 151 (281)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCcEEEEEeC
Confidence 1236799999988632 221 121 234455643 44455555555 25678888875
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.16 Score=47.65 Aligned_cols=116 Identities=14% Similarity=0.009 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... . ..++.. ..| +.+.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~D~~~~~~v~~ 75 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGA-----KVALV----DWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRD 75 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhhc-C-CCceEEEecCCCCHHHHHH
Confidence 35899999999999999999999874 24442 445555554444554221 0 112322 122 2221
Q ss_pred --------cCCCcEEEEeCCcCCCCCCcHHhHHHHHHH----HHHHHHHHHHhhh-CCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVA-SRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~kpg~~r~dll~~N~~----Ii~~i~~~I~~~a-~p~a~vivvtNP 224 (442)
+...|++|..+|... ..+-.+.+..|.. ..+.+.+.+.+.. .+.+.|++++..
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 141 (267)
T 2gdz_A 76 TFRKVVDHFGRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 141 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence 235799999988643 1223344566644 5566666665531 125788888754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0024 Score=60.87 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe----cCccccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG----INPYELF 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~----~~~~eal 170 (442)
+++||.|+|| |.||++++..|+..|. .|... +++.+.+. ... .-+..- ....+++
T Consensus 2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~-------~~~----~~~~~Dl~d~~~~~~~~ 60 (286)
T 3gpi_A 2 SLSKILIAGC-GDLGLELARRLTAQGH-----EVTGL----RRSAQPMP-------AGV----QTLIADVTRPDTLASIV 60 (286)
T ss_dssp CCCCEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----ECTTSCCC-------TTC----CEEECCTTCGGGCTTGG
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCC-----EEEEE----eCCccccc-------cCC----ceEEccCCChHHHHHhh
Confidence 3579999995 9999999999999874 24442 33322210 000 001110 1123455
Q ss_pred CC-CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 171 ED-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 171 ~d-ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++ +|+||.+++... .+..+....|..-...+.+.+.+. .-..+|.+|-
T Consensus 61 ~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~--~~~~~v~~SS 109 (286)
T 3gpi_A 61 HLRPEILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGA--PLQHVFFVSS 109 (286)
T ss_dssp GGCCSEEEECHHHHH---HC-----CCSHHHHHHHHHHTTTS--CCCEEEEEEE
T ss_pred cCCCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhC--CCCEEEEEcc
Confidence 56 999999887432 122334556777777777777653 2235555553
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.062 Score=49.60 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=66.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCC--ceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cccc--
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQ--PIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYEL-- 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~--~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~ea-- 169 (442)
++|.|+||+|+||.+++..|+..|....+. .|.+ .+++.+.++....++.... .++... .| +.+.
T Consensus 3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~ 74 (244)
T 2bd0_A 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL----SSRTAADLEKISLECRAEG----ALTDTITADISDMADVR 74 (244)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE----EESCHHHHHHHHHHHHTTT----CEEEEEECCTTSHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEE----EeCCHHHHHHHHHHHHccC----CeeeEEEecCCCHHHHH
Confidence 479999999999999999999887521100 2444 2455566665655554211 122221 11 1111
Q ss_pred ---------cCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 ---------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 ---------l~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+...|+||..+|...... .+ -...+..|.. +++.+.+.+.+. ..+.|++++...
T Consensus 75 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~~ 147 (244)
T 2bd0_A 75 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVA 147 (244)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEEecch
Confidence 237999999988653211 11 2233445543 344444445442 467888887643
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.13 Score=49.02 Aligned_cols=114 Identities=16% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... . ++. +..| +.
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~---~~~~~~~Dl~d~~~v~~ 98 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGA-----QVAVA----ARHSDALQVVADEIAGVG-G---KALPIRCDVTQPDQVRG 98 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGGHHHHHHHHHTT-C---CCEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC-C---eEEEEEcCCCCHHHHHH
Confidence 45899999999999999999999884 25553 455666676666665321 1 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. +..+.|++++.
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~~g~iv~isS 169 (276)
T 3r1i_A 99 MLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQ-GLGGTIITTAS 169 (276)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEECc
Confidence 12237899999988653221 121 22344553 3455555666554 24577777764
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.035 Score=51.57 Aligned_cols=111 Identities=21% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccE-E-EecC--cccc--
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-K-IGIN--PYEL-- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v-~-i~~~--~~ea-- 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++....++.. ++ . +..| +.+.
T Consensus 11 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~ 74 (254)
T 2wsb_A 11 GACAAVTGAGSGIGLEICRAFAASGA-----RLIL----IDREAAALDRAAQELGA-------AVAARIVADVTDAEAMT 74 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGG-------GEEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhcc-------cceeEEEEecCCHHHHH
Confidence 45899999999999999999999874 2444 24555555555444421 11 1 1111 1111
Q ss_pred --------cCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|+||..+|...... .+ -.+.+..|..- .+.+.+.+.+. ..+.|++++..
T Consensus 75 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 145 (254)
T 2wsb_A 75 AAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR--GAGAIVNLGSM 145 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEecc
Confidence 357899999988643211 11 12344555443 44555555553 35778887754
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.075 Score=50.64 Aligned_cols=114 Identities=16% Similarity=0.056 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||..++..|+..|. .|.+ .+++.+.++....++.... .++.. ..| +.+
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~d~~~v~~ 110 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISE 110 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-----EEEE----EcCCHHHHHHHHHHHHhcC----CceeEEECCCCCHHHHHH
Confidence 35899999999999999999998774 2444 2445555665555554321 12222 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|...... .+ -.+.+..|..- .+.+.+.+.+. ..+.||+++..
T Consensus 111 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 181 (285)
T 2c07_A 111 VINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSI 181 (285)
T ss_dssp HHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC--CCCEEEEECCh
Confidence 2347899999988653211 11 22345555443 44444555443 35778887754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.12 Score=48.71 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... +. ..+. +..| +
T Consensus 10 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~D~~~~~~~~~ 78 (267)
T 3t4x_A 10 GKTALVTGSTAGIGKAIATSLVAEGA-----NVLIN----GRREENVNETIKEIRAQY-PD-AILQPVVADLGTEQGCQD 78 (267)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHHHHC-TT-CEEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhC-CC-ceEEEEecCCCCHHHHHH
Confidence 35789999999999999999999884 25553 555666666666665321 11 1122 1111 1
Q ss_pred -ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|...... .+. ...+..|..- .+.+.+.+.+. ..+.|++++--
T Consensus 79 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (267)
T 3t4x_A 79 VIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIASE 145 (267)
T ss_dssp HHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TEEEEEEECCG
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCCEEEEEcch
Confidence 223457899999988643221 122 2235555433 55556666652 56788888754
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.029 Score=56.05 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|+||+|.+|..+...|...+ |.. +.+.++...++..+. ..+. ..+..+..-+.++++++|+|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~-fp~---~el~~~~s~~~aG~~----~~~~------~~~~~~~~~~~~~~~~~Dvv 67 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERD-FPA---SAVRFFASARSQGRK----LAFR------GQEIEVEDAETADPSGLDIA 67 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-CCE---EEEEEEECTTTSSCE----EEET------TEEEEEEETTTSCCTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCc---eEEEEEECcccCCCc----eeec------CCceEEEeCCHHHhccCCEE
Confidence 689999999999999999888875 322 455555433221111 0011 01334433345678999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++.+
T Consensus 68 f~a~~ 72 (344)
T 3tz6_A 68 LFSAG 72 (344)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 99866
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.086 Score=49.69 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++..... .++.. ..| +.+
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~~---~~~~~~~~Dv~~~~~v~~ 77 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGA-----NVAV----AGRSTADIDACVADLDQLGS---GKVIGVQTDVSDRAQCDA 77 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTSS---SCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhhCC---CcEEEEEcCCCCHHHHHH
Confidence 35889999999999999999999885 2555 25666777777777754320 12222 222 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS 147 (262)
T 3pk0_A 78 LAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS--GSGRVVLTSS 147 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--SSCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEec
Confidence 2337899999988643 221 122 223455533 445555666553 3566777664
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=54.55 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----e 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.. ++.+ ..| +. +
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~ 75 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGA-----SAVLL----DLPNSGGEAQAKKLGN-------NCVFAPADVTSEKDVQT 75 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECTTSSHHHHHHHHCT-------TEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCcHhHHHHHHHhCC-------ceEEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 25442 4444555544444421 1221 111 11 2
Q ss_pred cc-------CCCcEEEEeCCcC
Q 013466 169 LF-------EDAEWALLIGAKP 183 (442)
Q Consensus 169 al-------~dADiVIi~ag~~ 183 (442)
.+ ...|+||..+|..
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~ 97 (265)
T 2o23_A 76 ALALAKGKFGRVDVAVNCAGIA 97 (265)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHCCCCCEEEECCccC
Confidence 22 2799999998864
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.093 Score=49.08 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=66.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----c
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----L 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----a 169 (442)
++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... . ++.. ..| +.+ .
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~v~~~ 69 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF-----AVAIA----DYNDATAKAVASEINQAG-G---HAVAVKVDVSDRDQVFAA 69 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHHHH
Confidence 4789999999999999999999874 25442 455566665555554321 1 1221 111 121 1
Q ss_pred -------cCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 -------FEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 -------l~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. +..+.||+++.-
T Consensus 70 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 140 (256)
T 1geg_A 70 VEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACSQ 140 (256)
T ss_dssp HHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCEEEEECch
Confidence 2379999999886432 21 121 224455543 445555666553 225788887754
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=56.42 Aligned_cols=105 Identities=12% Similarity=0.008 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC----ccccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN----PYELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~----~~eal 170 (442)
+++|.|+||+|.+|++++..|+..+-. .|... +++.+.... .++.... ..+... .. ..+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~----~V~~~----~R~~~~~~~--~~l~~~~----~~~~~~D~~d~~~l~~~~ 70 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF----KVRVV----TRNPRKKAA--KELRLQG----AEVVQGDQDDQVIMELAL 70 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS----EEEEE----ESCTTSHHH--HHHHHTT----CEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc----eEEEE----EcCCCCHHH--HHHHHCC----CEEEEecCCCHHHHHHHH
Confidence 468999999999999999999986621 24332 333333221 1222110 011111 11 23568
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++|+||.+++....+ ....|....+.+.+.+.+. +. ..|+..|
T Consensus 71 ~~~d~vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~-gv-~~iv~~S 114 (299)
T 2wm3_A 71 NGAYATFIVTNYWESC------SQEQEVKQGKLLADLARRL-GL-HYVVYSG 114 (299)
T ss_dssp TTCSEEEECCCHHHHT------CHHHHHHHHHHHHHHHHHH-TC-SEEEECC
T ss_pred hcCCEEEEeCCCCccc------cchHHHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 8999999987632111 1334566677777777764 22 3455544
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0078 Score=59.96 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=64.4
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh-------------HHHHHHHHhcccCCCcc
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-------------LEGVAMELEDSLFPLLR 158 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~-------------l~g~a~DL~~~~~~~~~ 158 (442)
+.+++++|.|+||+|.||++++..|+..|. .|.+.+... +.... +.....++.+....
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~-----~V~~~~r~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--- 77 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNY-----EVCIVDNLV-RRLFDHQLGLESLTPIASIHDRISRWKALTGK--- 77 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCH-HHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCC---
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCC-----eEEEEEecC-ccccccccccccccccchhhhhhhhHhhccCC---
Confidence 345688999999999999999999998774 244421111 11000 00011111100001
Q ss_pred cEEE-ecC--c----ccccCC--CcEEEEeCCcCCCCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 159 EVKI-GIN--P----YELFED--AEWALLIGAKPRGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 159 ~v~i-~~~--~----~eal~d--ADiVIi~ag~~~kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++.+ ..| + .+++++ +|+||.+||....+. .+- ...+..|+.-...+.+.+.+. +....||++|-
T Consensus 78 ~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~SS 155 (404)
T 1i24_A 78 SIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGT 155 (404)
T ss_dssp CCEEEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECC
T ss_pred ceEEEECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEeCc
Confidence 1221 122 1 234566 999999988543111 111 235677888888888888775 33346777764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.01 Score=56.36 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=58.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~~e 168 (442)
|||.|+||+|.+|++++..|... +. .|... .++.+++. ++... .+.+. .| ..+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~-----~V~~~----~R~~~~~~----~~~~~------~v~~~~~D~~d~~~l~~ 61 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID-----HFHIG----VRNVEKVP----DDWRG------KVSVRQLDYFNQESMVE 61 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT-----TEEEE----ESSGGGSC----GGGBT------TBEEEECCTTCHHHHHH
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC-----cEEEE----ECCHHHHH----HhhhC------CCEEEEcCCCCHHHHHH
Confidence 58999999999999999998886 42 24442 33333221 11111 12221 11 245
Q ss_pred ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++++|+||.+++.... ...|....+.+++.+.+. +. ..|+.+|
T Consensus 62 ~~~~~d~vi~~a~~~~~--------~~~~~~~~~~l~~aa~~~-gv-~~iv~~S 105 (289)
T 3e48_A 62 AFKGMDTVVFIPSIIHP--------SFKRIPEVENLVYAAKQS-GV-AHIIFIG 105 (289)
T ss_dssp HTTTCSEEEECCCCCCS--------HHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred HHhCCCEEEEeCCCCcc--------chhhHHHHHHHHHHHHHc-CC-CEEEEEc
Confidence 78999999999874321 133666677788877774 32 3455554
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.089 Score=49.06 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... .++.. ..| +.+
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~~~~~~ 73 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGA-----AVAIA----ARRVEKLRALGDELTAAG----AKVHVLELDVADRQGVDA 73 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35899999999999999999999874 25442 455566666655554321 12222 111 122
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. . +.|++++--
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS~ 143 (247)
T 2jah_A 74 AVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS--K-GTVVQMSSI 143 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--C-CEEEEEccH
Confidence 23478999999886432 1 1222 234455543 344444555442 2 777777753
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.034 Score=52.06 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~------ 166 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.. ++... .| +
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~ 69 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGA-----TVIV----SDINAEGAKAAAASIGK-------KARAIAADISDPGSVKA 69 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCT-------TEEECCCCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHhCC-------ceEEEEcCCCCHHHHHH
Confidence 35899999999999999999999884 2544 25566666655555521 11111 11 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+. +..+.|++++--
T Consensus 70 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 141 (247)
T 3rwb_A 70 LFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAA-GKAGRVISIASN 141 (247)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCT
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCcEEEEECch
Confidence 122347899999988643 221 121 234455533 345555556664 346888888754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.07 Score=49.99 Aligned_cols=114 Identities=13% Similarity=0.008 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++.. ..| +.+
T Consensus 14 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 80 (266)
T 1xq1_A 14 AKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHTC----ARNEYELNECLSKWQKKG----FQVTGSVCDASLRPEREK 80 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHHH
Confidence 46899999999999999999999874 24442 455555655555554221 12222 111 111
Q ss_pred cc--------CCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHHHH----HHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LF--------EDAEWALLIGAKPRG-P--GME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al--------~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~Ii----~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ ...|+||..+|.... + ..+ -...+..|..-. +...+.+.+. ..+.|++++..
T Consensus 81 ~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~iv~isS~ 152 (266)
T 1xq1_A 81 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSSI 152 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC--
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 11 578999999886431 1 112 223455565433 3334444443 35677777754
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.017 Score=54.27 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.. ++.. ..| +.+.
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~ 68 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVLA----DVLDEEGAATARELGD-------AARYQHLDVTIEEDWQR 68 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTGG-------GEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCC-------ceeEEEecCCCHHHHHH
Confidence 35899999999999999999999874 25442 4555555544443311 1221 111 1222
Q ss_pred --------cCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 --------FEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 --------l~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|++|..+|.... + ..+ -...+..|.. +.+.+.+.+.+. ..+.||+++.-
T Consensus 69 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 139 (254)
T 1hdc_A 69 VVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSA 139 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 2379999999886432 1 112 1234455533 345666666663 35778887754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.069 Score=49.50 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .++.. ..| +.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 71 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGA-----TVVGT----ATSQASAEKFENSMKEKG----FKARGLVLNISDIESIQN 71 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 45899999999999999999999874 24442 455566666655554321 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+..-|++|..+|...... .+ -...+..|.. +.+...+.+.+. ..+.|++++-..
T Consensus 72 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~g~iv~isS~~ 143 (247)
T 3lyl_A 72 FFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK--RWGRIISIGSVV 143 (247)
T ss_dssp HHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcchh
Confidence 12235799999988653211 11 1234455533 344445555553 467888887643
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=56.50 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+.++|+|||+ |.+|..++..|... +. +.+.++ |++.++++..+.++.. ++....+..+++++|
T Consensus 134 ~~~~igiIG~-G~~g~~~a~~l~~~~g~----~~V~v~----dr~~~~~~~l~~~~~~-------~~~~~~~~~e~v~~a 197 (312)
T 2i99_A 134 SSEVLCILGA-GVQAYSHYEIFTEQFSF----KEVRIW----NRTKENAEKFADTVQG-------EVRVCSSVQEAVAGA 197 (312)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHCCC----SEEEEE----CSSHHHHHHHHHHSSS-------CCEECSSHHHHHTTC
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhCCC----cEEEEE----cCCHHHHHHHHHHhhC-------CeEEeCCHHHHHhcC
Confidence 4679999995 99999999998875 42 235553 5666676655544321 234445566889999
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+++.
T Consensus 198 DiVi~at 204 (312)
T 2i99_A 198 DVIITVT 204 (312)
T ss_dssp SEEEECC
T ss_pred CEEEEEe
Confidence 9999874
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.064 Score=50.60 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec---CcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~---~~~eal~d 172 (442)
|+||.|+|| |.||++++..|+..|. .|... +++...+... ... .+.... .+.+ +++
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~----~~~------~~~~~~~D~~d~~-~~~ 63 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGW-----RIIGT----SRNPDQMEAI----RAS------GAEPLLWPGEEPS-LDG 63 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTC-----EEEEE----ESCGGGHHHH----HHT------TEEEEESSSSCCC-CTT
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCC-----EEEEE----EcChhhhhhH----hhC------CCeEEEecccccc-cCC
Confidence 469999997 9999999999998874 24332 3444443322 111 122111 1233 889
Q ss_pred CcEEEEeCCcC
Q 013466 173 AEWALLIGAKP 183 (442)
Q Consensus 173 ADiVIi~ag~~ 183 (442)
+|+||.+++..
T Consensus 64 ~d~vi~~a~~~ 74 (286)
T 3ius_A 64 VTHLLISTAPD 74 (286)
T ss_dssp CCEEEECCCCB
T ss_pred CCEEEECCCcc
Confidence 99999998754
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.016 Score=55.75 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dA 173 (442)
++||.|+||+|.||++++..|+..|. .+.+ + +++. ..|+.+.. ...++++ ++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~v~~--~--~r~~------~~D~~d~~-----------~~~~~~~~~~~ 56 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD-----VELV--L--RTRD------ELNLLDSR-----------AVHDFFASERI 56 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-----EEEE--C--CCTT------TCCTTCHH-----------HHHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC-----eEEE--E--ecCc------cCCccCHH-----------HHHHHHHhcCC
Confidence 46899999999999999999998763 2333 2 2211 11222111 1124455 89
Q ss_pred cEEEEeCCcCCCC---CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 174 EWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 174 DiVIi~ag~~~kp---g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|+||.+++..... ..+..+.+..|..-...+.+.+.+. + -..+|.+|-
T Consensus 57 d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~SS 107 (321)
T 1e6u_A 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-D-VNKLLFLGS 107 (321)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEECC
T ss_pred CEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEEEcc
Confidence 9999998854211 1133456778888888888888774 2 236666664
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.063 Score=50.53 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++....++.... .++.+. .| +.+
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~ 95 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGA-----RVVL----TARDVEKLRAVEREIVAAG----GEAESHACDLSHSDAIAA 95 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhC----CceeEEEecCCCHHHHHH
Confidence 35899999999999999999999874 2444 3566677776666665321 122221 11 112
Q ss_pred -------ccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg----~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|....++ .+. .+.+..|.. +.+.+.+.+.+. ..+.||+++-.
T Consensus 96 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 167 (262)
T 3rkr_A 96 FATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA--KRGHIINISSL 167 (262)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCCEEEEECSS
T ss_pred HHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCceEEEEech
Confidence 2245899999988632211 121 234444533 345555555552 46777777753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.11 Score=43.77 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCccc-----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYE-----L 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~e-----a 169 (442)
+++|.|+|+ |.+|..++..|...|. ++.+. |+++++++.... .. ..+... ..+.+ .
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~-----~V~~i----d~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~~ 67 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGK-----KVLAV----DKSKEKIELLED----EG----FDAVIADPTDESFYRSLD 67 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----ESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhCC
Confidence 568999996 9999999999998875 25553 445555543321 11 011111 11121 3
Q ss_pred cCCCcEEEEeCC
Q 013466 170 FEDAEWALLIGA 181 (442)
Q Consensus 170 l~dADiVIi~ag 181 (442)
+.++|+||++.+
T Consensus 68 ~~~~d~vi~~~~ 79 (141)
T 3llv_A 68 LEGVSAVLITGS 79 (141)
T ss_dssp CTTCSEEEECCS
T ss_pred cccCCEEEEecC
Confidence 578999998755
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.023 Score=53.31 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc----
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY---- 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~---- 167 (442)
+.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++... +. +..| +.
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~ 71 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGA-----KVVI----VDRDKAGAERVAGEIGDA-------ALAVAADISKEADVD 71 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTT-------EEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EcCCHHHHHHHHHHhCCc-------eEEEEecCCCHHHHH
Confidence 346899999999999999999999884 2544 356666666665555321 11 1111 11
Q ss_pred -------cccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHH----HHHHHHHHHHHhhh--CCCeEEEEeCCc
Q 013466 168 -------ELFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVA--SRNVKVIVVGNP 224 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~~kpg----~~r---~dll~~N~----~Ii~~i~~~I~~~a--~p~a~vivvtNP 224 (442)
+.+...|++|..+|....++ .+. ...+..|. .+.+.+.+.+.+.. +..+.|++++-.
T Consensus 72 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~ 148 (261)
T 3n74_A 72 AAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST 148 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred HHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence 22337899999988654222 121 22344443 34555555555431 125677777754
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.097 Score=49.14 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.+.. .++.. ..| +.
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 78 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGA-----SVVV----TDLKSEGAEAVAAAIRQAG----GKAIGLECNVTDEQHREA 78 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTC-----EEEE----EESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35889999999999999999999885 2544 2556666676666665321 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C-CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRG-P-GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-p-g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.|++++-.
T Consensus 79 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 148 (256)
T 3gaf_A 79 VIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA--GGGAILNISSM 148 (256)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcCH
Confidence 123378999999886432 2 1221 223444533 444555555552 46788888754
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.029 Score=53.68 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||.|+||+|.||++++..|+..|. .|... +++.....+....+.+.. .. ..+.. ...++.++|+
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~-~~~~~---~~~Dl~~~d~ 72 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGE-----EVTVL----DDLRVPPMIPPEGTGKFL-EK-PVLEL---EERDLSDVRL 72 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----CEEEE----CCCSSCCSSCCTTSSEEE-CS-CGGGC---CHHHHTTEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCC-----EEEEE----ecCCcccccchhhhhhhc-cC-CCeeE---EeCccccCCE
Confidence 57999999999999999999999874 24432 222110000000011100 00 01111 1234458999
Q ss_pred EEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
||.+++....+ .....+.+. |..-...+.+.+.+. +. ..++.+|
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v-~~~v~~S 118 (321)
T 3vps_A 73 VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GV-PKVVVGS 118 (321)
T ss_dssp EEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred EEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CC-CeEEEec
Confidence 99988754310 112233455 888888888888875 32 3555555
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.035 Score=53.66 Aligned_cols=113 Identities=14% Similarity=-0.019 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecC---c----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN---P----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~---~----~ 167 (442)
.+||.|+||+|.||++++..|+..|. .|.+. +++.+... ....++.. ..++..... + .
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~ 68 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGY-----EVYGA----DRRSGEFASWRLKELGI-----ENDVKIIHMDLLEFSNII 68 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----CSCCSTTTTHHHHHTTC-----TTTEEECCCCTTCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----ECCCcccccccHhhccc-----cCceeEEECCCCCHHHHH
Confidence 36899999999999999999998773 24442 23222211 11111110 012222111 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++++ .|+||.+||..... ..+....+..|..-...+.+.+.+. +....|++++-
T Consensus 69 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS 127 (345)
T 2z1m_A 69 RTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQAST 127 (345)
T ss_dssp HHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEE
T ss_pred HHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEec
Confidence 33444 59999998854211 1234556777888788888877764 33356666653
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.016 Score=57.22 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=57.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||.|+||+|.+|++++..|+..|.+ .++.+|.+.+.+. ..++++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~------~v~~~d~~~d~~~------------------------l~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDH------HIFEVHRQTKEEE------------------------LESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC------EEEECCTTCCHHH------------------------HHHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC------EEEEECCCCCHHH------------------------HHHHhccCCEE
Confidence 58999999999999999999988742 2222322101111 12334468999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|.+++..+. .+..+....|......+++.+.+. +....++.+|
T Consensus 51 ih~a~~~~~--~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~S 93 (369)
T 3st7_A 51 VHLAGVNRP--EHDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSS 93 (369)
T ss_dssp EECCCSBCT--TCSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEE
T ss_pred EECCcCCCC--CCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeC
Confidence 998875432 122233455666677777777764 3344566555
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0069 Score=54.50 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=64.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC---CC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---DA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~---dA 173 (442)
++|.|+||+|++|.+++..|+.. .+.+ .+++.+.++....++....... ++.-.....+.++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-------~V~~----~~r~~~~~~~~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-------DLLL----SGRRAGALAELAREVGARALPA--DLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-------EEEE----ECSCHHHHHHHHHHHTCEECCC--CTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-------CEEE----EECCHHHHHHHHHhccCcEEEe--eCCCHHHHHHHHHhcCCC
Confidence 47899999999999999998875 1444 2455555554444332100000 0000000122333 78
Q ss_pred cEEEEeCCcCCCC------CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 174 EWALLIGAKPRGP------GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 174 DiVIi~ag~~~kp------g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|+||..+|..... ..+-...+..|..-...+.+.+.+. ..+.|++++..
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~iv~~sS~ 122 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ--KGARAVFFGAY 122 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE--EEEEEEEECCC
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 9999998864321 1123445667776666666665331 35678887764
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.073 Score=54.68 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=61.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC----------cccEEEe
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIG 163 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~----------~~~v~i~ 163 (442)
....|..||| +|.||..++..|+..|. ++..+ |+++++++.+...-....-+. ..+.+.+
T Consensus 9 ~~~~~~~ViG-lGyvGlp~A~~La~~G~-----~V~~~----D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 9 HHGSKLTVVG-LGYIGLPTSIMFAKHGV-----DVLGV----DINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred ccCCccEEEe-eCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe
Confidence 3356999999 59999999999999874 24443 455566554432100000000 1245666
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCC-cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~-~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ +++||+||++.+.|..... ...| ..-+...++.|.++..++.+|+.-|
T Consensus 79 td----~~~aDvvii~VpTp~~~~~~~~~D-----l~~V~~~~~~i~~~l~~g~iVV~~S 129 (431)
T 3ojo_A 79 TT----PEASDVFIIAVPTPNNDDQYRSCD-----ISLVMRALDSILPFLKKGNTIIVES 129 (431)
T ss_dssp SS----CCCCSEEEECCCCCBCSSSSCBBC-----CHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred Cc----hhhCCEEEEEeCCCccccccCCcc-----HHHHHHHHHHHHHhCCCCCEEEEec
Confidence 54 4689999999877653220 1111 2334444455555554565555444
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.26 Score=46.14 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... .++.. ..| +.+
T Consensus 9 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 75 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYGIVEELASLGA-----SVYTC----SRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQE 75 (260)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 46899999999999999999999874 25442 455566665555554221 12222 111 111
Q ss_pred -------cc-CCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LF-EDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al-~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ ...|++|..+|...... .+ -...+..|.. +.+...+.+.+. ..+.|++++--
T Consensus 76 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 147 (260)
T 2ae2_A 76 LMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS--ERGNVVFISSV 147 (260)
T ss_dssp HHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--SSEEEEEECCG
T ss_pred HHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 12 57999999988653211 12 1234455544 344444444442 45788888754
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.018 Score=54.84 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.. ++.. ..| +.
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~~ 90 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGA-----IVGLH----GTREDKLKEIAADLGK-------DVFVFSANLSDRKSIKQ 90 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCS-------SEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCC-------ceEEEEeecCCHHHHHH
Confidence 35889999999999999999999884 25453 4555666655544421 1221 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..||.... + ..+ -...+..|..- .+.+.+.+.+. ..+.||+++--
T Consensus 91 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~Iv~isS~ 161 (266)
T 3grp_A 91 LAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR--RYGRIINITSI 161 (266)
T ss_dssp HHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcEEEEECCH
Confidence 123478999999886532 1 111 12344555443 55666666653 46778887754
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.068 Score=49.06 Aligned_cols=110 Identities=20% Similarity=0.112 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY------- 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~------- 167 (442)
++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.... .+..| +.
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-------~~~~D~~~~~~~~~~~ 69 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGY-----RVGLM----ARDEKRLQALAAELEGAL-------PLPGDVREEGDWARAV 69 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHSTTCE-------EEECCTTCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhhhce-------EEEecCCCHHHHHHHH
Confidence 4799999999999999999999874 24442 445555554443332110 11111 11
Q ss_pred ----cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ----ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ----eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|+||..+|...... .+ -.+.+..|.. +.+.+.+.+.+. ..+.|++++-.
T Consensus 70 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~~~iv~isS~ 138 (234)
T 2ehd_A 70 AAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR--GGGTIVNVGSL 138 (234)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCT
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCcEEEEECCc
Confidence 12347899999988643211 11 1234455543 334555555552 45778887753
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.089 Score=50.03 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... . .++.. ..| +.
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~v~~ 94 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGC-----HTVIA----SRSLPRVLTAARKLAGAT-G--RRCLPLSMDVRAPPAVMA 94 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-C--CcEEEEEcCCCCHHHHHH
Confidence 45899999999999999999999874 25553 455566665655554221 1 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|... .+- .+. ...+..|..- .+...+.+.+. ..+.|++++--
T Consensus 95 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 165 (277)
T 4fc7_A 95 AVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD--HGGVIVNITAT 165 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECCS
T ss_pred HHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 22347899999988543 221 121 2344555433 33444444442 36788888754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.1 Score=48.86 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++... .| +.+
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 73 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGF-----TVFA----GRRNGEKLAPLVAEIEAAG----GRIVARSLDARNEDEVTA 73 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTC-----EEEE----EESSGGGGHHHHHHHHHTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CeEEEEECcCCCHHHHHH
Confidence 45799999999999999999999885 2555 2556677776766665321 122221 11 111
Q ss_pred cc------CCCcEEEEeCCcCCC-C--CCcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LF------EDAEWALLIGAKPRG-P--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al------~dADiVIi~ag~~~k-p--g~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+ ...|++|..+|.... + ..+. ...+..|. .+.+...+.+.+. ..+.|++++-
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 142 (252)
T 3h7a_A 74 FLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH--GQGKIFFTGA 142 (252)
T ss_dssp HHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred HHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 12 257999999886542 1 1121 23344553 3445555666663 4677777764
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.11 Score=48.79 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... . .++.. ..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~D~~~~~~~~~ 74 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGA-----HIVLV----ARQVDRLHEAARSLKEKF-G--VRVLEVAVDVATPEGVDA 74 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHHHhc-C--CceEEEEcCCCCHHHHHH
Confidence 35799999999999999999999874 25442 455555555555553210 0 11221 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.|++++.-
T Consensus 75 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (263)
T 3ai3_A 75 VVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR--GGGAIIHNASI 145 (263)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 12379999999886432 1 1121 223444533 445555555553 35778877754
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.13 Score=48.14 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----e 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... +. .++.. ..| +. +
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGA-----RLLLF----SRNREKLEAAASRIASLV-SG-AQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHS-TT-CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC-CC-CeEEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 25442 455566665555554210 00 01221 111 11 1
Q ss_pred ccC------CCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFE------DAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~------dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.++ +.|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.|++++-.
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 145 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK--GWGRMVYIGSV 145 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECch
Confidence 222 4899999988643211 11 1233445543 335555665553 35777777753
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.11 Score=49.35 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c--------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P-------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~-------- 166 (442)
++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++....... ..+..| +
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~ 96 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGA-----MVIG----TATTEAGAEGIGAAFKQAGLEG---RGAVLNVNDATAVDALV 96 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHTCCC---EEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcCCcE---EEEEEeCCCHHHHHHHH
Confidence 5788999999999999999999885 2444 2556666666666665322110 111111 1
Q ss_pred ---ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ---YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..||...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 97 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 164 (270)
T 3ftp_A 97 ESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA--RGGRIVNITS 164 (270)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECc
Confidence 122347899999988643211 121 234455543 344455555553 4678888875
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.025 Score=53.24 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY----EL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~----ea 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... ..+..| +. +.
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~------~~~~~D~~d~~~v~~~ 76 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGA-----TVAIA----DLDVMAAQAVVAGLENGG------FAVEVDVTKRASVDAA 76 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTCTTCC------EEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHhcCC------eEEEEeCCCHHHHHHH
Confidence 35899999999999999999999874 25442 455555554444332100 111111 11 12
Q ss_pred c-------CCCcEEEEeCCcCCC-CC--Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 170 F-------EDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 170 l-------~dADiVIi~ag~~~k-pg--~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+ ...|+||..+|.... +- .+ -...+..|.. +.+...+.+.+. +..+.|++++.
T Consensus 77 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 146 (263)
T 3ak4_A 77 MQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLAS-NTKGVIVNTAS 146 (263)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEEecc
Confidence 2 279999999886432 11 11 1234455543 344444455442 22467777764
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.13 Score=49.17 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
..+|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 94 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGV-----TVGA----LGRTRTEVEEVADEIVGAG----GQAIALEADVSDELQMRN 94 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHTTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 35788999999999999999999885 2544 2556677777777665321 12222 222 11
Q ss_pred ------cccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..||... .|- .+. ...+..|.. +++...+.+.+. ..+.|++++-
T Consensus 95 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS 165 (283)
T 3v8b_A 95 AVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR--GGGAIVVVSS 165 (283)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCceEEEEcC
Confidence 22347899999988642 221 222 234555533 445555555653 4677777775
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.047 Score=51.20 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. ++ +.+.++....++.... .++.. ..| +.+
T Consensus 21 ~k~vlItGasggiG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 87 (274)
T 1ja9_A 21 GKVALTTGAGRGIGRGIAIELGRRGA-----SVVVN----YGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVV 87 (274)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----cCCchHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHH
Confidence 46899999999999999999999874 24442 33 4455555555554221 12222 111 111
Q ss_pred -cc-------CCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -LF-------EDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -al-------~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ .+.|+||..+|...... .+ -.+.+..|..-...+.+.+..+...++.||+++--
T Consensus 88 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~ 157 (274)
T 1ja9_A 88 ALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI 157 (274)
T ss_dssp HHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcCh
Confidence 22 27899999888643211 12 13455666655555555555442123677777653
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.2 Score=47.35 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++.. ..| +.+
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 87 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGA-----RVYTC----SRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDK 87 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 45899999999999999999999874 25442 455566665555554221 12222 111 111
Q ss_pred -------cc-CCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 169 -------LF-EDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 169 -------al-~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+ ...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++...
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~~ 160 (273)
T 1ae1_A 88 LMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIA 160 (273)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGG
T ss_pred HHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcCHh
Confidence 12 578999999886432 21 121 223445533 344444555553 457888887643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.1 Score=49.40 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--------chhhhHHHHHHHHhcccCCCcccEEE-ecC-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--------RSLQALEGVAMELEDSLFPLLREVKI-GIN- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d--------~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~- 165 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.+...+ ...+.++....++.... .++.. ..|
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~ 80 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGA-----DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEVDV 80 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEECCT
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----eEEEEcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEccC
Confidence 35799999999999999999999884 2555322100 01344454444444321 12222 111
Q ss_pred -ccc-----------ccCCCcEEEEeCCcCCCC-CCc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 166 -PYE-----------LFEDAEWALLIGAKPRGP-GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 166 -~~e-----------al~dADiVIi~ag~~~kp-g~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+ .+...|++|..||..... ..+ -...+..|..-...+.+.+..+-...+.||+++--.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 156 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVA 156 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccch
Confidence 111 223789999998864322 122 234566676655556665555433467788887643
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.051 Score=51.06 Aligned_cols=115 Identities=16% Similarity=0.031 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh-HHHHHHHHhcccCCCcccEEEe-cC--ccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~-l~g~a~DL~~~~~~~~~~v~i~-~~--~~e--- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+. ++..+.++.... . .++... .| +.+
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~v~ 71 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGA-----DIVLN----GFGDAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVR 71 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----CCSCHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCC-----EEEEE----eCCcchHHHHHHHHHHhcc-C--CcEEEEECCCCCHHHHH
Confidence 35799999999999999999999874 25442 344444 554444443210 0 012221 11 111
Q ss_pred --------ccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.... +- .+. ...+..|.. +++...+.+.+. ..+.||+++..
T Consensus 72 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 143 (260)
T 1x1t_A 72 GLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASA 143 (260)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECcH
Confidence 22378999999886432 21 121 234555544 455555666553 35788888754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.057 Score=51.62 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... . .++... .| +.+
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~~~ 93 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGA-----QCVIA----SRKMDVLKATAEQISSQT-G--NKVHAIQCDVRDPDMVQN 93 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-C--CceEEEEeCCCCHHHHHH
Confidence 36899999999999999999999874 25442 455555655555554321 0 122221 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHHHH----HHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQIF----AEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~Ii----~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..||.... + ..+ -...+..|..-. +...+.+.+. ...+.|++++.-
T Consensus 94 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS~ 165 (302)
T 1w6u_A 94 TVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA-QKGAAFLSITTI 165 (302)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCCEEEEEccc
Confidence 12356999999885432 1 112 223445554433 3334444422 245778877753
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.026 Score=52.50 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----- 167 (442)
+++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++....++... +. +..| +.
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~ 66 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGH-----QVSM----MGRRYQRLQQQELLLGNA-------VIGIVADLAHHEDVDV 66 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGG-------EEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCC-------ceEEECCCCCHHHHHH
Confidence 45799999999999999999999884 2555 355666666665555321 11 1111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHHHH----HHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQIF----AEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~Ii----~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+. ...+..|..-. +...+.+.+ .++.|++++-
T Consensus 67 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~~~~iv~isS 135 (235)
T 3l6e_A 67 AFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGE---RGGVLANVLS 135 (235)
T ss_dssp HHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCEEEEEECC
T ss_pred HHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH---cCCEEEEEeC
Confidence 123367999999886431 2 1221 23455564433 444444443 2347777664
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.11 Score=48.63 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+ .+++.+.++....++.... .++.. ..| +.
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 72 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGA-----RVVI----TGRTKEKLEEAKLEIEQFP----GQILTVQMDVRNTDDIQK 72 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCST----TCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 35789999999999999999999884 2544 3566677776666665321 12322 122 11
Q ss_pred ------cccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+. +..+.|++++--
T Consensus 73 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 144 (257)
T 3imf_A 73 MIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEK-GIKGNIINMVAT 144 (257)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-CCCcEEEEECch
Confidence 12237899999988543 221 121 223455543 344445555343 356778887753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.021 Score=55.87 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~e 168 (442)
.+||.|+||+|.||++++..|+..|. .|.+. +++..........+... .++.. ..| + .+
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~d~~~~~~ 74 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKGY----SLTAPTVPSLFETARVA-----DGMQSEIGDIRDQNKLLE 74 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCSSSSCHHHHTTTT-----TTSEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-----eEEEE----eCCCcccchhhHhhccC-----CceEEEEccccCHHHHHH
Confidence 46999999999999999999998774 24442 22222221111111100 11221 111 1 23
Q ss_pred ccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++ .|+||.+++.+... ..+..+.+..|..-...+.+.+.+. +....|+.+|-
T Consensus 75 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS 132 (357)
T 1rkx_A 75 SIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV-GGVKAVVNITS 132 (357)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-CCCCEEEEECC
T ss_pred HHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEecC
Confidence 3444 89999998854211 1123456777888788888887774 32456666664
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.035 Score=55.16 Aligned_cols=97 Identities=23% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+|+||+|+||+|.||..++..|...+ +. .+.+..+...++..+. ..+. ...+.+..-+.+.++++|
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~-~p---~~elv~i~s~~~~G~~----~~~~------~~~i~~~~~~~~~~~~vD 67 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQERE-FP---VDELFLLASERSEGKT----YRFN------GKTVRVQNVEEFDWSQVH 67 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-CC---EEEEEEEECTTTTTCE----EEET------TEEEEEEEGGGCCGGGCS
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCC-CC---CEEEEEEECCCCCCCc----eeec------CceeEEecCChHHhcCCC
Confidence 46899999999999999999998864 11 1344333222211110 0011 013333322345778999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+|+++.|. ..-+++++...+ .++++|..+.+
T Consensus 68 vVf~a~g~----------------~~s~~~a~~~~~---~G~~vId~s~~ 98 (336)
T 2r00_A 68 IALFSAGG----------------ELSAKWAPIAAE---AGVVVIDNTSH 98 (336)
T ss_dssp EEEECSCH----------------HHHHHHHHHHHH---TTCEEEECSST
T ss_pred EEEECCCc----------------hHHHHHHHHHHH---cCCEEEEcCCc
Confidence 99998661 223445555444 24577666655
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.023 Score=57.22 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~-~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (442)
|+||+|+||+|.+|..++. .|...+. +.+.++++..+ +..+ .+.+.. . ..+.+. ..+.+.++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~----~~v~i~~~~~~-s~G~------~v~~~~-g--~~i~~~~~~~~~~~~~~ 66 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDF----DAIRPVFFSTS-QLGQ------AAPSFG-G--TTGTLQDAFDLEALKAL 66 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG----GGSEEEEEESS-STTS------BCCGGG-T--CCCBCEETTCHHHHHTC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCC----CeEEEEEEEeC-CCCC------CccccC-C--CceEEEecCChHHhcCC
Confidence 5799999999999999999 5554432 12455554333 2111 011000 0 122222 2234557899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||++.|
T Consensus 67 DvVf~a~g 74 (367)
T 1t4b_A 67 DIIVTCQG 74 (367)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999866
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.094 Score=49.62 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... . .++.. ..| +.+
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~v~~ 88 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVVA----SRNLEEASEAAQKLTEKY-G--VETMAFRCDVSNYEEVKK 88 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-C--CeEEEEEcCCCCHHHHHH
Confidence 35799999999999999999999874 25442 455566665555552111 1 11221 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|...... .+. ...+..|..- .+...+.+.+. ..+.||+++--
T Consensus 89 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 159 (267)
T 1vl8_A 89 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIGSL 159 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEECCc
Confidence 2337899999988653211 121 2344555443 34444444442 35677777653
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.098 Score=49.17 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... .++.. ..| +.+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~ 73 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGT-----AIALL----DMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIG 73 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 35899999999999999999999884 25442 455566665655554321 12222 111 121
Q ss_pred -------ccCCCcEEEEeCCcC-C-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKP-R-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~-~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|.. . .|- .+. ...+..|.. +.+...+.+.+. ..+.||+++.
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 144 (262)
T 1zem_A 74 TVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTAS 144 (262)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCcEEEEEcc
Confidence 234789999998864 2 221 121 223444543 344455555543 3578888875
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.16 Score=48.40 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=66.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhhHHHHHHHHhcccCCCcccEEEe-cC--cc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----- 167 (442)
+++.|+||+|+||.+++..|+..|. .+.+. ++ +.+.++..+.++.... ..++... .| +.
T Consensus 26 k~~lVTGas~GIG~~ia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~ 93 (281)
T 3v2h_A 26 KTAVITGSTSGIGLAIARTLAKAGA-----NIVLN----GFGAPDEIRTVTDEVAGLS---SGTVLHHPADMTKPSEIAD 93 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----CCCCHHHHHHHHHHHHTTC---SSCEEEECCCTTCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCChHHHHHHHHHHhhcc---CCcEEEEeCCCCCHHHHHH
Confidence 5789999999999999999999885 25553 33 3455555555554321 1123222 11 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..||...... .+. ...+..|.. +.+...+.+.+. ..+.|++++--
T Consensus 94 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 164 (281)
T 3v2h_A 94 MMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK--GWGRIINIASA 164 (281)
T ss_dssp HHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCc
Confidence 22347899999988653221 121 234455533 445555555553 45778887753
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.025 Score=53.73 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c-------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~------- 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... ..+..| +
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~------~~~~~Dv~~~~~v~~~ 75 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGA-----RVVLA----DLPETDLAGAAASVGRGA------VHHVVDLTNEVSVRAL 75 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECTTSCHHHHHHHHCTTC------EEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHhCCCe------EEEECCCCCHHHHHHH
Confidence 35789999999999999999999884 25553 455566665555552111 111111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCC-CC----CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPRG-PG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~k-pg----~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|.... ++ .+. ...+..|.. +.+...+.+.+. ..+.|++++-.
T Consensus 76 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 147 (271)
T 3tzq_B 76 IDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA--GGGAIVNISSA 147 (271)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEECCH
Confidence 1223378999999886521 21 121 234555644 344444555552 56788888754
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.13 Score=48.86 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... .++.. ..| +.
T Consensus 22 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~~~v~~ 88 (277)
T 2rhc_B 22 SEVALVTGATSGIGLEIARRLGKEGL-----RVFVC----ARGEEGLRTTLKELREAG----VEADGRTCDVRSVPEIEA 88 (277)
T ss_dssp SCEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 35899999999999999999999874 25442 455566665555554221 12221 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHHHHHHHHHHhh----hCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAV----ASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii~~i~~~I~~~----a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+ -...+..|..-...+.+.+... ....+.||+++..
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~ 161 (277)
T 2rhc_B 89 LVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST 161 (277)
T ss_dssp HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence 12347899999988653211 11 1234556655444444433221 0135778887754
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.025 Score=53.98 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=66.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c--------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P-------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~-------- 166 (442)
+++.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... ..+..| +
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~------~~~~~Dv~d~~~v~~~~ 93 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGY-----GVAL----AGRRLDALQETAAEIGDDA------LCVPTDVTDPDSVRALF 93 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTSCC------EEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCe------EEEEecCCCHHHHHHHH
Confidence 4678889999999999999999885 2545 2556666666665553111 111111 1
Q ss_pred ---ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ---YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+...+.+.||+++--
T Consensus 94 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 165 (272)
T 4dyv_A 94 TATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSI 165 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCS
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECch
Confidence 122347999999998643 221 121 234555543 3555556666531125788887753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.019 Score=55.88 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=63.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc------hhhhHHHHHHHHhcccCCCcccEE-EecC--c-
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER------SLQALEGVAMELEDSLFPLLREVK-IGIN--P- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~------~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~- 166 (442)
+||.|+||+|.||++++..|+..|. .|.+....... ..+.++ ++.... . .++. +..| +
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~r~~~~~~~~~~----~l~~~~-~--~~~~~~~~D~~~~ 70 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGY-----LPVVIDNFHNAFRGGGSLPESLR----RVQELT-G--RSVEFEEMDILDQ 70 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-----CEEEEECSSSSCBCSSSSBHHHH----HHHHHH-T--CCCEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEecCCcccccccccHHHHH----HHHhcc-C--CceEEEECCCCCH
Confidence 5899999999999999999998773 24442211110 112222 122100 0 0111 1111 1
Q ss_pred ---ccccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ---YELFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ---~eal~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++ ++|+||.+++..... ..+..+.+..|..-...+.+.+.+. + -..||.+|-
T Consensus 71 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~SS 132 (348)
T 1ek6_A 71 GALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-G-VKNLVFSSS 132 (348)
T ss_dssp HHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-T-CCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-C-CCEEEEECc
Confidence 23455 799999998853211 0123456778888888888887774 2 235555553
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.21 Score=46.67 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+ .+++.+.++..+.++.... +...++. +..| +.
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGY-----RVVL----IARSKQNLEKVHDEIMRSN-KHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTC-----EEEE----EESCHHHHHHHHHHHHHHC-TTSCCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-cccCcceEEeccCCCHHHHHH
Confidence 35789999999999999999999885 2544 2566677776666664331 1101122 2111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+...|++|..||...... .+. ...+..|.. +.+...+.+.+. ..+.|++++...
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 147 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRA 147 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC--
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEEccHH
Confidence 12346899999988643221 111 233444533 455555555553 467888887643
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.11 Score=49.49 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc-c---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY-E--- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~-e--- 168 (442)
..+|.|+||+|+||.+++..|+..|. .|.+ .+++.++++..+.++.... . .++... .| +. +
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~~v~ 79 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGI-----MVVL----TCRDVTKGHEAVEKLKNSN-H--ENVVFHQLDVTDPIATMS 79 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT-C--CSEEEEECCTTSCHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC-C--CceEEEEccCCCcHHHHH
Confidence 45789999999999999999999874 2555 3566667776666665432 1 123321 12 11 1
Q ss_pred --------ccCCCcEEEEeCCcC
Q 013466 169 --------LFEDAEWALLIGAKP 183 (442)
Q Consensus 169 --------al~dADiVIi~ag~~ 183 (442)
.+...|++|..||..
T Consensus 80 ~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 80 SLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHhCCCCCEEEECCccc
Confidence 134789999998864
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=95.31 E-value=0.042 Score=51.48 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c-------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~------- 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... ..+..| +
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~------~~~~~Dv~d~~~v~~~ 73 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGA-----KVIGT----ATSESGAQAISDYLGDNG------KGMALNVTNPESIEAV 73 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHGGGE------EEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhcccc------eEEEEeCCCHHHHHHH
Confidence 35788999999999999999999885 25442 555666665655554321 011111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ----YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.|++++-
T Consensus 74 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 142 (248)
T 3op4_A 74 LKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK--RQGRIINVGS 142 (248)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 122337899999988654211 121 233455533 445555555553 4678888875
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.045 Score=50.98 Aligned_cols=110 Identities=13% Similarity=0.006 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecCccccc-CCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~~~eal-~dA 173 (442)
|++|.|+||+|+||.+++..|+..|. .|.+.. ++.+.++ .+..|+.+... . . .-.+.+ ...
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~~----r~~~~~~~~~~~Dl~~~~~-v----~---~~~~~~~~~i 63 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGH-----QIVGID----IRDAEVIADLSTAEGRKQA-I----A---DVLAKCSKGM 63 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEE----SSSSSEECCTTSHHHHHHH-H----H---HHHTTCTTCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEEe----CCchhhccccccCCCCHHH-H----H---HHHHHhCCCC
Confidence 35799999999999999999999874 254432 2222111 02234433210 0 0 001122 567
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|++|..+|.....+ .-.+.+..|.. +.+...+.+.+. ..+.|++++--.
T Consensus 64 d~lv~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 116 (257)
T 1fjh_A 64 DGLVLCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKG--HQPAAVVISSVA 116 (257)
T ss_dssp SEEEECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCGG
T ss_pred CEEEECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEECChh
Confidence 99999988654111 23344555544 344444444442 357788877543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.13 Score=48.32 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. .+++.+.++..+.++.... .++.. ..| +.
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~-----~vv~~---~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 71 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGY-----NIVIN---YARSKKAALETAEEIEKLG----VKVLVVKANVGQPAKIKE 71 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-----EEEEE---cCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 45799999999999999999999885 24442 1455566666666665321 12222 112 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+..-|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. ..+.|++++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS 141 (258)
T 3oid_A 72 MFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN--GGGHIVSISS 141 (258)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECc
Confidence 122356999999885432 21 121 223455543 344455555552 4677777765
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.16 Score=47.48 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhh--HHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQA--LEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~--l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
++|.|+||+|+||.+++..|+..|. .+.+. +++.+. ++..+.++.... .++.. ..| +.+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~ 69 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF-----DIAVA----DLPQQEEQAAETIKLIEAAD----QKAVFVGLDVTDKANFD 69 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC-----EEEEE----ECGGGHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCcchHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHH
Confidence 4789999999999999999999874 25443 444444 555555554321 12222 111 111
Q ss_pred --------ccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.... +- .+. ...+..|.. +.+...+.+.+. +..+.|++++--
T Consensus 70 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS~ 142 (258)
T 3a28_C 70 SAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDEL-GVKGKIINAASI 142 (258)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCCEEEEECCG
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCcEEEEECcc
Confidence 12378999999886432 21 121 234455543 445555555553 232677777754
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.13 Score=48.65 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--C
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--d 172 (442)
+++||.|+||+|.||++++..|+..+.... .....+ + -+..|+.+.. ...++++ +
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~---~~~~~~--~-------~~~~D~~d~~-----------~~~~~~~~~~ 61 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPG---EDWVFV--S-------SKDADLTDTA-----------QTRALFEKVQ 61 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTCCTT---CEEEEC--C-------TTTCCTTSHH-----------HHHHHHHHSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCCccc---cccccc--C-------ceecccCCHH-----------HHHHHHhhcC
Confidence 468999999999999999999998875211 111111 0 0111221110 0122333 3
Q ss_pred CcEEEEeCCcCCC---CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 173 AEWALLIGAKPRG---PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 173 ADiVIi~ag~~~k---pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+|+||.+++.... ...+..+.+..|..-...+.+.+.+. +.. .++.++-
T Consensus 62 ~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~-~~v~~SS 113 (319)
T 4b8w_A 62 PTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GAR-KVVSCLS 113 (319)
T ss_dssp CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCS-EEEEECC
T ss_pred CCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEcc
Confidence 8999999886321 11244567888988888888888775 222 5555553
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0059 Score=59.29 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-----c
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P-----Y 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~-----~ 167 (442)
|||.|+||+|.||++++..|+.. +. .|... +++...+.. +... .++.+ ..| + .
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~-----~V~~~----~r~~~~~~~----~~~~-----~~~~~~~~D~~~~~~~~~ 62 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY-----EVYGL----DIGSDAISR----FLNH-----PHFHFVEGDISIHSEWIE 62 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC-----EEEEE----ESCCGGGGG----GTTC-----TTEEEEECCTTTCSHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC-----EEEEE----eCCcchHHH----hhcC-----CCeEEEeccccCcHHHHH
Confidence 58999999999999999999986 43 24332 333232211 1100 12222 111 1 2
Q ss_pred cccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
++++++|+||.+++..... ..+..+.+..|..-...+.+.+.+. + ..++.+|-
T Consensus 63 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~SS 117 (345)
T 2bll_A 63 YHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 117 (345)
T ss_dssp HHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred hhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C--CeEEEEec
Confidence 3566899999988753211 0133455677777777788777764 3 56777765
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.027 Score=53.08 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=42.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|..++..|...+. ++.+ ++.+++.+.++.. ... . +. .+..+.+++||+|
T Consensus 1 M~I~iIG~-G~mG~~la~~l~~~g~-----~V~~--~~~~~~~~~~~~~----~~~--g----~~--~~~~~~~~~aDvv 60 (264)
T 1i36_A 1 LRVGFIGF-GEVAQTLASRLRSRGV-----EVVT--SLEGRSPSTIERA----RTV--G----VT--ETSEEDVYSCPVV 60 (264)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTC-----EEEE--CCTTCCHHHHHHH----HHH--T----CE--ECCHHHHHTSSEE
T ss_pred CeEEEEec-hHHHHHHHHHHHHCCC-----eEEE--eCCccCHHHHHHH----HHC--C----Cc--CCHHHHHhcCCEE
Confidence 58999995 9999999999998774 2444 3322133443322 211 1 12 3456778999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 61 i~~v~ 65 (264)
T 1i36_A 61 ISAVT 65 (264)
T ss_dssp EECSC
T ss_pred EEECC
Confidence 99844
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.028 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
++||+|+||+|.||..++..|..++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~ 30 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERD 30 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC
Confidence 4699999999999999999998654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.15 Score=48.55 Aligned_cols=114 Identities=12% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.... .++.. ..| +.+.
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~ 99 (275)
T 4imr_A 33 GRTALVTGSSRGIGAAIAEGLAGAGA-----HVILH----GVKPGSTAAVQQRIIASG----GTAQELAGDLSEAGAGTD 99 (275)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSTTTTHHHHHHHHHTT----CCEEEEECCTTSTTHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHHhcC----CeEEEEEecCCCHHHHHH
Confidence 46889999999999999999999885 25553 445566666666664321 12222 111 1111
Q ss_pred -c------CCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 -F------EDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 -l------~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+ ...|++|..||...... .+. ...+..|. .+.+...+.+.+. ..+.||+++--
T Consensus 100 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 169 (275)
T 4imr_A 100 LIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR--KWGRVVSIGSI 169 (275)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEECCH
Confidence 1 36899999988643221 122 22344553 3455555555553 46788888753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.17 Score=47.48 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=67.3
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc---
Q 013466 96 MVNIAVSGAAG-MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~G-~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e--- 168 (442)
.++|.|+||+| +||.+++..|+..|. .+.+ .+++.+.++....++.... ..++... .| +.+
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~ 89 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGA-----DVVI----SDYHERRLGETRDQLADLG---LGRVEAVVCDVTSTEAVD 89 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTC---SSCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCC-----EEEE----ecCCHHHHHHHHHHHHhcC---CCceEEEEeCCCCHHHHH
Confidence 45899999877 799999999999884 2544 2556666666666664321 1123322 11 111
Q ss_pred --------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 --------LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+..-|++|..+|...... .+. ...+..|. .+.+...+.+.+. ...+.|++++-.
T Consensus 90 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 162 (266)
T 3o38_A 90 ALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGV-DHGGVIVNNASV 162 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SCCEEEEEECCG
T ss_pred HHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEeCCH
Confidence 2236799999988643221 121 23344453 3444555555553 256778887653
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.016 Score=54.43 Aligned_cols=110 Identities=14% Similarity=0.018 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.. ++... .| +.+
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~ 69 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGA-----KVAFS----DINEAAGQQLAAELGE-------RSMFVRHDVSSEADWTL 69 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHHHHCT-------TEEEECCCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHcCC-------ceEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 24442 4555556555444411 12211 11 111
Q ss_pred -------ccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.... + ..+. ...+..|.. ..+.+.+.+.+. . +.|++++..
T Consensus 70 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~-g~iv~isS~ 139 (253)
T 1hxh_A 70 VMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--G-GSIINMASV 139 (253)
T ss_dssp HHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--C-EEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc--C-CEEEEEcch
Confidence 22356999999886432 1 1122 234555643 455555665552 3 788888754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.082 Score=49.95 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=66.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~---- 167 (442)
++.+|.|+||+|+||.+++..|+..|. .+.+. ..++.+.++....++.... .++.. ..| +.
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~-----~V~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~ 92 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGW-----RVGVN---YAANREAADAVVAAITESG----GEAVAIPGDVGNAADIA 92 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-----EEEEE---cCCChhHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHH
Confidence 345789999999999999999999885 24332 1344555665555554321 12222 111 11
Q ss_pred -------cccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHHH----HHHHHHHHHHhhh-CCCeEEEEeCCc
Q 013466 168 -------ELFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVA-SRNVKVIVVGNP 224 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~~kpg----~~r---~dll~~N~~----Ii~~i~~~I~~~a-~p~a~vivvtNP 224 (442)
+.+...|+||..||....++ .+. ...+..|.. +++...+.+.+.. +..+.||+++-.
T Consensus 93 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~ 168 (272)
T 4e3z_A 93 AMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM 168 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence 12236899999988654322 121 234455533 3344444444421 135778887754
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.022 Score=55.03 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+|+||+|+||+|.+|..++..+...+- +.|.-. .|++..... ..|+.... .....+.++.+..+.++++|
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~------~eLv~~-~d~~~~~~~--G~d~gel~-g~~~gv~v~~dl~~ll~~~D 75 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPD------ATLVGA-LDRTGSPQL--GQDAGAFL-GKQTGVALTDDIERVCAEAD 75 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTT------EEEEEE-BCCTTCTTT--TSBTTTTT-TCCCSCBCBCCHHHHHHHCS
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EEecCcccc--cccHHHHh-CCCCCceecCCHHHHhcCCC
Confidence 478999999889999999999887553 333221 233322111 11222111 11113455556666788999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+||-.
T Consensus 76 VVIDf 80 (272)
T 4f3y_A 76 YLIDF 80 (272)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99875
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.22 Score=46.75 Aligned_cols=113 Identities=9% Similarity=0.014 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++... .++.+ ..| +.+
T Consensus 16 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~ 81 (278)
T 2bgk_A 16 DKVAIITGGAGGIGETTAKLFVRYGA-----KVVIA----DIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVRN 81 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----cCChhHHHHHHHHhCCC-----CceEEEECCCCCHHHHHH
Confidence 45899999999999999999999874 24442 44444444444444211 02222 111 111
Q ss_pred c-------cCCCcEEEEeCCcCCC---C--CCc---HHhHHHHHHHHHH----HHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 L-------FEDAEWALLIGAKPRG---P--GME---RAGLLDINGQIFA----EQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 a-------l~dADiVIi~ag~~~k---p--g~~---r~dll~~N~~Ii~----~i~~~I~~~a~p~a~vivvtNP 224 (442)
. +...|+||..+|.... + ..+ -.+.+..|..-.. ...+.+.+. ..+.|++++..
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~isS~ 154 (278)
T 2bgk_A 82 LVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASI 154 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCCeEEEEeec
Confidence 1 2378999998885431 1 111 1334555644333 333444332 45778887753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.026 Score=54.12 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+||+|||+ |.+|..++..|...+. .|.+ .+++.++++..+.++ .+....+..+.++++|+
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~g~-----~V~v----~~r~~~~~~~l~~~~---------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKEGA-----KVFL----WNRTKEKAIKLAQKF---------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHHTC-----EEEE----ECSSHHHHHHHTTTS---------CEEECSCGGGTGGGCSE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHc---------CCeeehhHHhhhcCCCE
Confidence 469999995 9999999999998774 2555 255555555332211 13343455678899999
Q ss_pred EEEeCCcC
Q 013466 176 ALLIGAKP 183 (442)
Q Consensus 176 VIi~ag~~ 183 (442)
||.+...+
T Consensus 190 Vi~atp~~ 197 (275)
T 2hk9_A 190 IVNTTSVG 197 (275)
T ss_dssp EEECSSTT
T ss_pred EEEeCCCC
Confidence 99985543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=95.22 E-value=0.087 Score=48.48 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=64.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----- 168 (442)
++|.|+||+|+||.+++..|+..|. .+.+. + +++.+.++....++.... . ++.. ..| +.+
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~-----~v~~~-~--~r~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~~ 69 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC-----KVLVN-Y--ARSAKAAEEVSKQIEAYG-G---QAITFGGDVSKEADVEAM 69 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE-E--SSCHHHHHHHHHHHHHHT-C---EEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE-c--CCCHHHHHHHHHHHHhcC-C---cEEEEeCCCCCHHHHHHH
Confidence 4789999999999999999999874 24331 1 344455554544443211 1 2221 111 111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 ------LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+.|+||..+|...... .+ -...+..|..- ++...+.+.+. ..+.|++++..
T Consensus 70 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~iv~~sS~ 139 (244)
T 1edo_A 70 MKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASV 139 (244)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--CCCEEEEECCh
Confidence 1237899999988654211 11 12345555443 44444444442 45778888754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.31 Score=46.68 Aligned_cols=118 Identities=11% Similarity=0.056 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.+ .+...+.++.....++... .++.... | +.
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 117 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGA-----DVAINY--LPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARS 117 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEC--CGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe--CCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHH
Confidence 45899999999999999999999885 254432 2222334444444343221 1222211 1 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC----Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG----ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg----~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.....+ .+ -...+..|..-...+.+.+..+-...+.||+++--
T Consensus 118 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~ 187 (294)
T 3r3s_A 118 LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI 187 (294)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence 22347899999988643211 12 13456667665555666555543345678887753
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.042 Score=51.91 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=62.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
|||.|+||+|.||++++..|+..|. .|.. + ++. ..|+.+.. ...++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~-------~~D~~d~~-----------~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY-----DIYP--F--DKK-------LLDITNIS-----------QVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE-----EEEE--E--CTT-------TSCTTCHH-----------HHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--e--ccc-------ccCCCCHH-----------HHHHHHHhcCCC
Confidence 3899999999999999999998763 2333 1 221 11222111 1123344 689
Q ss_pred EEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||.+++...... .+..+.+..|..-...+.+.+.+. +. .++.+|-
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~v~~SS 106 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA--KLVYIST 106 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC--EEEEEEE
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEch
Confidence 9999988643211 345667788888888888888875 23 5666653
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.22 Score=47.71 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~ 150 (442)
.+++.|+||+|+||.+++..|+..|. .|.+. + ++.+.++..+.++.
T Consensus 9 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~~r~~~~~~~~~~~l~ 55 (291)
T 1e7w_A 9 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCLH----YHRSAAEANALSATLN 55 (291)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEEE----cCCCHHHHHHHHHHHh
Confidence 35789999999999999999999874 25442 4 55566665655554
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=56.09 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--C
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--d 172 (442)
..+||.|+||+|.||++++..|+..|. .|.. + +++ ..|+.+.. ...++++ +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~-------~~Dl~d~~-----------~~~~~~~~~~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNV-----EVIP--T--DVQ-------DLDITNVL-----------AVNKFFNEKK 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSE-----EEEE--E--CTT-------TCCTTCHH-----------HHHHHHHHHC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCC-----eEEe--c--cCc-------cCCCCCHH-----------HHHHHHHhcC
Confidence 357999999999999999999998763 2333 2 222 11222211 1123444 7
Q ss_pred CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 173 AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 173 ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+|+||.+++..... ..+..+.+..|..-...+.+.+.+. + +.++.+|-
T Consensus 64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~--~~iv~~SS 113 (292)
T 1vl0_A 64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-G--AEIVQIST 113 (292)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-T--CEEEEEEE
T ss_pred CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEech
Confidence 99999998854210 1234556778888888888888774 3 26666654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.02 Score=54.28 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++. .++.. ..| +.+
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~ 69 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGA-----SLVAV----DREERLLAEAVAALE-------AEAIAVVADVSDPKAVEA 69 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTCC-------SSEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhc-------CceEEEEcCCCCHHHHHH
Confidence 35899999999999999999999874 25442 555566654444332 11221 111 111
Q ss_pred -------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 169 -------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.|++++...
T Consensus 70 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 139 (263)
T 2a4k_A 70 VFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA 139 (263)
T ss_dssp HHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 2235799999988653211 121 23456676555555555444321256777777543
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.021 Score=54.90 Aligned_cols=114 Identities=10% Similarity=-0.010 Sum_probs=60.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec-cccchhhhHHHHHHHHhcccCCCcccEEEe-------cCccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL-GSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~-d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~e 168 (442)
+||.|+||+|.||++++..|+..|. .|..... +.+ +.+.+... .++... ..++.+. ....+
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~~r~~~~-~~~~~~~~-~~~~~~----~~~~~~~~~Dl~d~~~~~~ 70 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY-----SVNTTIRADPE-RKRDVSFL-TNLPGA----SEKLHFFNADLSNPDSFAA 70 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEECCCC-----CCCHHH-HTSTTH----HHHEEECCCCTTCGGGGHH
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC-----EEEEEEeCCcc-chhHHHHH-Hhhhcc----CCceEEEecCCCCHHHHHH
Confidence 4899999999999999999998774 2433211 111 00111111 111100 0012211 11235
Q ss_pred ccCCCcEEEEeCCcCCCCCCc-HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~~-r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++++|+||.+|+.......+ ..+.+..|+.-...+.+.+.+. ..-..|++++
T Consensus 71 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~-~~~~~iV~~S 124 (322)
T 2p4h_X 71 AIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNS-KTVKRFIYTS 124 (322)
T ss_dssp HHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTC-SSCCEEEEEE
T ss_pred HHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEec
Confidence 678999999988632100111 1236778888888888877663 1123555554
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.066 Score=50.35 Aligned_cols=112 Identities=9% Similarity=0.068 Sum_probs=67.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~------ 167 (442)
+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++.. ++.. ..| +.
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~ 72 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGA-----EVLLT----GRNESNIARIREEFGP-------RVHALRSDIADLNEIAVL 72 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHGG-------GEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhCC-------cceEEEccCCCHHHHHHH
Confidence 5799999999999999999999885 25552 5566666655554421 1111 111 11
Q ss_pred -----cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.|++++..
T Consensus 73 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 140 (255)
T 4eso_A 73 GAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV 140 (255)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 22347899999988654221 122 2345666555555555554432235678888754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.2 Score=47.61 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc------------cchhhhHHHHHHHHhcccCCCcccEEE-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS------------ERSLQALEGVAMELEDSLFPLLREVKI- 162 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~------------d~~~~~l~g~a~DL~~~~~~~~~~v~i- 162 (442)
.+++.|+||+|+||.+++..|+..|. .+.+.+.+. .++.+.++..+.++.... .++..
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~-----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 81 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGA-----DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN----RRIVTA 81 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT----CCEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC----CceEEE
Confidence 35789999999999999999999885 254532210 112455555555554321 12222
Q ss_pred ecC--ccc-----------ccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEE
Q 013466 163 GIN--PYE-----------LFEDAEWALLIGAKPRGPG----MER---AGLLDINGQ----IFAEQGKALNAVASRNVKV 218 (442)
Q Consensus 163 ~~~--~~e-----------al~dADiVIi~ag~~~kpg----~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~v 218 (442)
..| +++ .+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. +..+.|
T Consensus 82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~i 160 (286)
T 3uve_A 82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAG-GRGGSI 160 (286)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEE
T ss_pred EcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCcEE
Confidence 111 111 2347899999998644222 122 224455533 445555555553 346788
Q ss_pred EEeCCc
Q 013466 219 IVVGNP 224 (442)
Q Consensus 219 ivvtNP 224 (442)
++++--
T Consensus 161 v~isS~ 166 (286)
T 3uve_A 161 ILTSSV 166 (286)
T ss_dssp EEECCG
T ss_pred EEECch
Confidence 888754
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.073 Score=49.78 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----e 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+ +....++.... .++... .| +. +
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~--~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~ 68 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGA-----NIVLN----GFGDP--APALAEIARHG----VKAVHHPADLSDVAQIEA 68 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE----CSSCC--HHHHHHHHTTS----CCEEEECCCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCch--HHHHHHHHhcC----CceEEEeCCCCCHHHHHH
Confidence 35799999999999999999999874 25442 33322 22333343211 122221 11 11 2
Q ss_pred cc-------CCCcEEEEeCCcCCC-CC--Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LF-------EDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al-------~dADiVIi~ag~~~k-pg--~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ .+.|++|..+|.... +- .+ -...+..|.. +.+.+.+.+.+. ..+.|++++.-
T Consensus 69 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 139 (255)
T 2q2v_A 69 LFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR--NWGRIINIASV 139 (255)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcCc
Confidence 22 279999999886432 11 11 2334566655 566666766663 45788888754
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=57.86 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=45.2
Q ss_pred hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc
Q 013466 90 TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (442)
Q Consensus 90 ~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea 169 (442)
+-+...|+||+|+||+|.+|..+...|...+. +.|..+...++..+.- .|+ +-.+. .+..+..-+.+.
T Consensus 7 ~~~~~~~~~V~IvGAtG~vG~ellrlL~~hP~------~el~~l~S~~~aG~~~---~~~-~p~~~--~~l~~~~~~~~~ 74 (351)
T 1vkn_A 7 HHHHHHMIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTYAGKKL---EEI-FPSTL--ENSILSEFDPEK 74 (351)
T ss_dssp -----CCEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTTTTSBH---HHH-CGGGC--CCCBCBCCCHHH
T ss_pred cccccceeEEEEECCCCHHHHHHHHHHHcCCC------cEEEEEeCcccccCCh---HHh-Chhhc--cCceEEeCCHHH
Confidence 44556789999999999999999999998764 4454454443322111 111 00000 122222223444
Q ss_pred c-CCCcEEEEeCC
Q 013466 170 F-EDAEWALLIGA 181 (442)
Q Consensus 170 l-~dADiVIi~ag 181 (442)
+ .++|+|+++.+
T Consensus 75 ~~~~~Dvvf~alp 87 (351)
T 1vkn_A 75 VSKNCDVLFTALP 87 (351)
T ss_dssp HHHHCSEEEECCS
T ss_pred hhcCCCEEEECCC
Confidence 4 78999999755
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.12 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.||.|+|+ |.+|..++..|...+.
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~ 30 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGH 30 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC
Confidence 457999996 9999999999998774
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.051 Score=50.70 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLREVKI-GIN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e--- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. ++ +.+.++....++.... .++.. ..| +.+
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~ 73 (261)
T 1gee_A 7 GKVVVITGSSTGLGKSMAIRFATEKA-----KVVVN----YRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVI 73 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----cCCChHHHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 35899999999999999999999874 24442 34 4455554544443211 12222 111 111
Q ss_pred -cc-------CCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -LF-------EDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -al-------~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ .+.|+||..+|...... .+. .+.+..|.. +++...+.+.+. +..+.|++++.-
T Consensus 74 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~~iv~isS~ 146 (261)
T 1gee_A 74 NLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSSV 146 (261)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-CCCCEEEEeCCH
Confidence 12 37899999988643211 121 234455533 344444555442 225677777753
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.07 Score=51.02 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++...... .+. +..| +.
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~ 100 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGY-----SVVIT----GRRPDVLDAAAGEIGGRTGN---IVRAVVCDVGDPDQVAA 100 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHHSS---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcCCC---eEEEEEcCCCCHHHHHH
Confidence 45789999999999999999999884 25552 55666666666666432111 111 1111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC--CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRG--PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k--pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+..-|++|..+|.... +- .+. ...+..|.. +.+...+.+.+.....+.||+++--
T Consensus 101 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 174 (281)
T 4dry_A 101 LFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSI 174 (281)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 223467999999986432 21 121 224455533 3555556666531126788888753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.21 Score=47.42 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+.+ ..+.+.++..+.++.... . ++. +..| +.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~~---~~~~~~~~~~~~~l~~~~-~---~~~~~~~Dv~d~~~v~~ 98 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGA-----AVALTY---VNAAERAQAVVSEIEQAG-G---RAVAIRADNRDAEAIEQ 98 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHhcC-C---cEEEEECCCCCHHHHHH
Confidence 35899999999999999999999885 244432 223345555555554321 1 222 2222 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..||...... .+ -...+..|..-...+.+.+..+-...+.||+++-.
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~ 167 (271)
T 3v2g_A 99 AIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN 167 (271)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence 12237899999988653221 12 12345566554444444444432245677777653
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.22 Score=46.97 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--------chhhhHHHHHHHHhcccCCCcccEEE-ecC-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--------RSLQALEGVAMELEDSLFPLLREVKI-GIN- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d--------~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~- 165 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.+.+.. .+.+.++....++.... .++.. ..|
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~ 83 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGA-----DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQADV 83 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECCT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEEecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCCC
Confidence 35899999999999999999999885 2544322100 11445554544444321 12222 111
Q ss_pred -ccc-----------ccCCCcEEEEeCCcCCC-CCCc-HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 -PYE-----------LFEDAEWALLIGAKPRG-PGME-RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 -~~e-----------al~dADiVIi~ag~~~k-pg~~-r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+ .+...|++|..+|.... +..+ -...+..|.. +++...+.+.+. +..+.|++++--
T Consensus 84 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 159 (278)
T 3sx2_A 84 RDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQ-GTGGSIVLISSS 159 (278)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECCG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEEccH
Confidence 111 22378999999886432 2111 1234455533 445555556554 346788888753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.22 Score=47.17 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=68.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc---------ccchhhhHHHHHHHHhcccCCCcccEEE-ecC-
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG---------SERSLQALEGVAMELEDSLFPLLREVKI-GIN- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d---------~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~- 165 (442)
+++.|+||+|+||.+++..|+..|. .+.+.+.. ..++.+.++..+.++.... .++.. ..|
T Consensus 16 k~~lVTGas~gIG~a~a~~la~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv 86 (280)
T 3pgx_A 16 RVAFITGAARGQGRSHAVRLAAEGA-----DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG----RKALTRVLDV 86 (280)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT----CCEEEEECCT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEEcCC
Confidence 5789999999999999999999885 24443221 0114556666655554321 12222 111
Q ss_pred -cc-----------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 -PY-----------ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 -~~-----------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+. +.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. +..+.||+++-
T Consensus 87 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~g~iv~isS 165 (280)
T 3pgx_A 87 RDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEA-GNGGSIVVVSS 165 (280)
T ss_dssp TCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCCEEEEEcc
Confidence 11 22347899999988643211 121 22344553 3455555666654 34688888875
Q ss_pred c
Q 013466 224 P 224 (442)
Q Consensus 224 P 224 (442)
-
T Consensus 166 ~ 166 (280)
T 3pgx_A 166 S 166 (280)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.023 Score=56.38 Aligned_cols=118 Identities=16% Similarity=0.054 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccch-----hhhHHHHHHHHhcccCCC--ccc---EEE-ec
Q 013466 97 VNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERS-----LQALEGVAMELEDSLFPL--LRE---VKI-GI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~-----~~~l~g~a~DL~~~~~~~--~~~---v~i-~~ 164 (442)
|||.|+||+|.||++++..|+ ..|. .|.+.....+.. ....+.+...+++.. .. ... +.+ ..
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNH-----SVVIVDSLVGTHGKSDHVETRENVARKLQQSD-GPKPPWADRYAALEVG 76 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC-----EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSC-SSCCTTTTCCCEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCC-----EEEEEecCCcccccccccchHHHHHHHHHHhh-ccccccCCceEEEEEC
Confidence 589999999999999999999 8763 244422111110 000222211111111 00 001 222 12
Q ss_pred C--c----ccccC--C-CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 165 N--P----YELFE--D-AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 165 ~--~----~eal~--d-ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
| + .++++ + +|+||.+++..... ..+..+.+..|..-...+.+.+.+. +. ..||+++
T Consensus 77 Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~-~~iv~~S 143 (397)
T 1gy8_A 77 DVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KC-DKIIFSS 143 (397)
T ss_dssp CTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CC-CEEEEEC
Confidence 2 1 23344 5 99999998854211 0133456788888888888887774 22 3555554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.025 Score=53.61 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREVK 161 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v~ 161 (442)
.||.|+|+ |++|+.++..|+..|+ + .|.|.+.|. |....+++..+..+.+.. +. .++.
T Consensus 32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~---~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~-~~v~ 104 (249)
T 1jw9_B 32 SRVLIVGL-GGLGCAASQYLASAGV-G---NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN-PH-IAIT 104 (249)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-S---EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TT-SEEE
T ss_pred CeEEEEee-CHHHHHHHHHHHHcCC-C---eEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC-CC-cEEE
Confidence 58999995 9999999999999886 2 366644332 001145666666665432 21 1233
Q ss_pred EecC------cccccCCCcEEEEeCC
Q 013466 162 IGIN------PYELFEDAEWALLIGA 181 (442)
Q Consensus 162 i~~~------~~eal~dADiVIi~ag 181 (442)
.... ..+.++++|+||.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~DvVi~~~d 130 (249)
T 1jw9_B 105 PVNALLDDAELAALIAEHDLVLDCTD 130 (249)
T ss_dssp EECSCCCHHHHHHHHHTSSEEEECCS
T ss_pred EEeccCCHhHHHHHHhCCCEEEEeCC
Confidence 2211 1345789999998744
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.036 Score=51.93 Aligned_cols=110 Identities=13% Similarity=0.161 Sum_probs=64.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.. ++.. ..| +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~ 64 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-----KVIAT----GRRQERLQELKDELGD-------NLYIAQLDVRNRAAIEEM 64 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCT-------TEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhcC-------ceEEEEcCCCCHHHHHHH
Confidence 3688999999999999999999874 25442 4555666555544421 1111 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+. ..+.|++++.-
T Consensus 65 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 135 (248)
T 3asu_A 65 LASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGST 135 (248)
T ss_dssp HHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEccc
Confidence 122347899999998642 221 121 234455533 345555555553 35777777754
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.16 Score=47.57 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .++.. ..| +.+
T Consensus 14 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~ 80 (260)
T 2zat_A 14 NKVALVTASTDGIGLAIARRLAQDGA-----HVVVS----SRKQENVDRTVATLQGEG----LSVTGTVCHVGKAEDRER 80 (260)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHH
Confidence 35899999999999999999999874 25442 455555655555554221 12221 111 111
Q ss_pred -------ccCCCcEEEEeCCcCC--CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~--kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|... .+ ..+. .+.+..|.. +.+...+.+.+. ..+.|++++--
T Consensus 81 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 152 (260)
T 2zat_A 81 LVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR--GGGSVLIVSSV 152 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEech
Confidence 1237999999988642 12 1121 234455544 334445555552 45777777753
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.15 Score=48.75 Aligned_cols=113 Identities=17% Similarity=0.088 Sum_probs=67.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~------- 166 (442)
++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.... | +
T Consensus 9 k~vlVTGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~ 75 (280)
T 3tox_A 9 KIAIVTGASSGIGRAAALLFAREGA-----KVVV----TARNGNALAELTDEIAGGG----GEAAALAGDVGDEALHEAL 75 (280)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHTTTT----CCEEECCCCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHH
Confidence 5788999999999999999999884 2444 3666677777766664321 1222211 1 1
Q ss_pred ----ccccCCCcEEEEeCCcCC--CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~--kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. ..+.|++++-.
T Consensus 76 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 146 (280)
T 3tox_A 76 VELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL--GGGSLTFTSSF 146 (280)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcCh
Confidence 122347899999988542 22 1121 223444533 445555555553 46777777653
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.058 Score=49.72 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY----EL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~----ea 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++... ++. ..| +. +.
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~------~~~-~~D~~~~~~~~~~ 70 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGA-----KVVAV----TRTNSDLVSLAKECPGI------EPV-CVDLGDWDATEKA 70 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHSTTC------EEE-ECCTTCHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHhccCC------CcE-EecCCCHHHHHHH
Confidence 46899999999999999999999874 24442 44445554333322110 111 111 11 22
Q ss_pred ---cCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 ---FEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 ---l~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|+||..+|...... .+ -...+..|..- ++...+.+.+. +..+.|++++-.
T Consensus 71 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~~iv~~sS~ 137 (244)
T 1cyd_A 71 LGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSSM 137 (244)
T ss_dssp HTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred HHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhC-CCCeEEEEEcch
Confidence 335799999988543211 11 12344555444 44444444442 225778887753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.035 Score=47.94 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||.|+|+ |.+|+.++..|...+.
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~ 27 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQ 27 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC
Confidence 358999995 9999999999998774
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.033 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
|+||.|+||+|.+|++++..|+..|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g 28 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG 28 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC
Confidence 5789999999999999999999987
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.3 Score=46.29 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.... | +.
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~ 92 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGA-----RILI----NGTDPSRVAQTVQEFRNVG----HDAEAVAFDVTSESEIIE 92 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHH
Confidence 45889999999999999999999884 2444 3566677777766665321 1222211 1 11
Q ss_pred ------cccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|... ++ ..+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 93 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iV~isS~ 163 (271)
T 4ibo_A 93 AFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR--GYGKIVNIGSL 163 (271)
T ss_dssp HHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEccH
Confidence 12337899999988643 22 1122 223455533 445555666553 45778887753
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.14 Score=44.28 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+|+ |.+|..++..|...|.
T Consensus 19 ~~~v~IiG~-G~iG~~la~~L~~~g~ 43 (155)
T 2g1u_A 19 SKYIVIFGC-GRLGSLIANLASSSGH 43 (155)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCCC
Confidence 479999995 9999999999998774
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.25 Score=48.29 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. + ++.+.++..+.++.
T Consensus 46 ~k~~lVTGas~GIG~aia~~La~~G~-----~Vv~~----~~r~~~~~~~~~~~l~ 92 (328)
T 2qhx_A 46 VPVALVTGAAKRLGRSIAEGLHAEGY-----AVCLH----YHRSAAEANALSATLN 92 (328)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----cCCCHHHHHHHHHHHH
Confidence 35789999999999999999999884 25442 4 55566665555553
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.084 Score=50.95 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... . .++.. ..| +
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~--~~~~~~~~Dv~d~~~v~~ 108 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGA-----NVAVA----ARSPRELSSVTAELGELG-A--GNVIGVRLDVSDPGSCAD 108 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSGGGGHHHHHHHTTSS-S--SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhhC-C--CcEEEEEEeCCCHHHHHH
Confidence 35789999999999999999999885 25553 556667776777665432 0 12222 222 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 109 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~iV~isS 178 (293)
T 3rih_A 109 AARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS--GRGRVILTSS 178 (293)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--SSCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEeC
Confidence 122346799999988643 22 1222 234455543 344444555553 3566666664
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.028 Score=51.62 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=43.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-Cc-----cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~-----~eal 170 (442)
|||.|+|+ |.+|+.++..|...+. ++.+. |+++++++..+.++. . .+.... .+ ...+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-----~v~vi----d~~~~~~~~l~~~~~-~------~~i~gd~~~~~~l~~a~i 63 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-----GVVII----NKDRELCEEFAKKLK-A------TIIHGDGSHKEILRDAEV 63 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-----CEEEE----ESCHHHHHHHHHHSS-S------EEEESCTTSHHHHHHHTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECCHHHHHHHHHHcC-C------eEEEcCCCCHHHHHhcCc
Confidence 58999996 9999999999998774 35553 555566554332211 1 111111 11 2348
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
++||+||++.+
T Consensus 64 ~~ad~vi~~~~ 74 (218)
T 3l4b_C 64 SKNDVVVILTP 74 (218)
T ss_dssp CTTCEEEECCS
T ss_pred ccCCEEEEecC
Confidence 89999998754
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.22 Score=46.21 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+.+ ..+.+.++..+.++.... .++. +..| +.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 71 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGY-----NVAVNY---AGSKEKAEAVVEEIKAKG----VDSFAIQANVADADEVKA 71 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 35788999999999999999999885 244432 123355555555554321 1222 1111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+. ...+..|.. +++...+.+.+. ..+.|++++-
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~iv~isS 141 (246)
T 3osu_A 72 MIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ--RSGAIINLSS 141 (246)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEEcc
Confidence 122378999999886532 2 1122 224555543 444555555553 4677888775
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.99 E-value=0.033 Score=52.59 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=57.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--c---Ccccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~--~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~---~~~ea 169 (442)
+||.|+||+|.+|++++..|+.. +. .|... +++.+.+... .+.. . .+... + ...++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~~----~r~~~~~~~l----~~~~--~--~~~~~D~~d~~~l~~~ 63 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPAS-----QIIAI----VRNVEKASTL----ADQG--V--EVRHGDYNQPESLQKA 63 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGG-----GEEEE----ESCTTTTHHH----HHTT--C--EEEECCTTCHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCC-----eEEEE----EcCHHHHhHH----hhcC--C--eEEEeccCCHHHHHHH
Confidence 47999999999999999999986 53 24442 3333333321 1110 0 11110 1 12356
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++|+||.+++.. ++ . ..|..-...+.+.+.+. +. ..++.+|
T Consensus 64 ~~~~d~vi~~a~~~--~~--~----~~n~~~~~~l~~a~~~~-~~-~~~v~~S 106 (287)
T 2jl1_A 64 FAGVSKLLFISGPH--YD--N----TLLIVQHANVVKAARDA-GV-KHIAYTG 106 (287)
T ss_dssp TTTCSEEEECCCCC--SC--H----HHHHHHHHHHHHHHHHT-TC-SEEEEEE
T ss_pred HhcCCEEEEcCCCC--cC--c----hHHHHHHHHHHHHHHHc-CC-CEEEEEC
Confidence 88999999988742 11 1 34666677777777764 22 2555555
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.05 Score=52.03 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY------ 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~------ 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... ..+..| +.
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~------~~~~~Dv~d~~~v~~~ 93 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-----HVLCA----DIDGDAADAAATKIGCGA------AACRVDVSDEQQIIAM 93 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHHHCSSC------EEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHcCCcc------eEEEecCCCHHHHHHH
Confidence 35789999999999999999999885 25442 555566665555552111 011111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 94 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~Iv~isS~ 163 (277)
T 3gvc_A 94 VDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER--GGGAIVNLSSL 163 (277)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcch
Confidence 223478999999886432 2 1222 234455544 355555555552 56788888754
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.17 Score=49.53 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-ccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-SERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d-~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~ 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+...+ .+++.+.++.....+.... . ++.. ..| + .
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~-----~V~~~~r~~~~r~~~~~~~l~~~~~~~~-~---~~~~~~~Dvtd~~~v~ 75 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGH-----RVYASMRDIVGRNASNVEAIAGFARDND-V---DLRTLELDVQSQVSVD 75 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEEESCTTTTTHHHHHHHHHHHHHHT-C---CEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEecCcccccCHHHHHHHHHHHHhcC-C---cEEEEEeecCCHHHHH
Confidence 35788999999999999999999885 24433222 2455555555444333211 1 1221 111 1 1
Q ss_pred ccc-------CCCcEEEEeCCcCC-CCC--Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ELF-------EDAEWALLIGAKPR-GPG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 eal-------~dADiVIi~ag~~~-kpg--~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+++ ...|++|..||... .|- .+ -...+..|.. +++...+.+.+. ..+.||+++.-
T Consensus 76 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~--~~g~iV~isS~ 147 (324)
T 3u9l_A 76 RAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ--KHGLLIWISSS 147 (324)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEecc
Confidence 222 38999999988542 221 12 1234555644 444445555653 46777777753
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.016 Score=55.48 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||.|+||+|.+|++++..|+..|.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~ 29 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH 29 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 57899999999999999999999873
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.017 Score=56.55 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC------ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~------~~e 168 (442)
++||.|+||+|.+|++++..|+..|. +|.+...+.+.+.+++. ...++... .+.+. .| ..+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~-----~V~~l~R~~~~~~~~~~-~~~~l~~~------~v~~~~~Dl~d~~~l~~ 77 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHR-----PTYILARPGPRSPSKAK-IFKALEDK------GAIIVYGLINEQEAMEK 77 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTC-----CEEEEECSSCCCHHHHH-HHHHHHHT------TCEEEECCTTCHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCC-----CEEEEECCCCCChhHHH-HHHHHHhC------CcEEEEeecCCHHHHHH
Confidence 46899999999999999999999873 24442222111223332 11222211 12221 11 234
Q ss_pred ccC--CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+++ ++|+||.+++.. |......+++.+.+.
T Consensus 78 ~~~~~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~ 109 (346)
T 3i6i_A 78 ILKEHEIDIVVSTVGGE-------------SILDQIALVKAMKAV 109 (346)
T ss_dssp HHHHTTCCEEEECCCGG-------------GGGGHHHHHHHHHHH
T ss_pred HHhhCCCCEEEECCchh-------------hHHHHHHHHHHHHHc
Confidence 677 999999998752 444445666666664
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.052 Score=54.17 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=51.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+..+|+|||+ |.+|...+..|....-+ +.|.++ |++.++++..+.++... . ...+....+..+++++|
T Consensus 127 ~~~~~v~iIGa-G~~a~~~a~al~~~~~~---~~V~V~----~r~~~~a~~la~~~~~~--~-g~~~~~~~~~~eav~~a 195 (350)
T 1x7d_A 127 PNARKMALIGN-GAQSEFQALAFHKHLGI---EEIVAY----DTDPLATAKLIANLKEY--S-GLTIRRASSVAEAVKGV 195 (350)
T ss_dssp TTCCEEEEECC-STTHHHHHHHHHHHSCC---CEEEEE----CSSHHHHHHHHHHHTTC--T-TCEEEECSSHHHHHTTC
T ss_pred ccCCeEEEECC-cHHHHHHHHHHHHhCCC---cEEEEE----cCCHHHHHHHHHHHHhc--c-CceEEEeCCHHHHHhcC
Confidence 34679999995 99999998877643212 235553 66778888777766431 0 11344555667889999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++-.
T Consensus 196 DiVi~aTp 203 (350)
T 1x7d_A 196 DIITTVTA 203 (350)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 99998743
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.045 Score=53.87 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--C
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--D 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--d 172 (442)
+++||+|||+ |.+|..++..|...+- +.+.-+ .|++.++++..+..+. +..+.+..+.++ +
T Consensus 3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~------~~l~av-~d~~~~~~~~~a~~~g---------~~~~~~~~~~l~~~~ 65 (344)
T 3euw_A 3 LTLRIALFGA-GRIGHVHAANIAANPD------LELVVI-ADPFIEGAQRLAEANG---------AEAVASPDEVFARDD 65 (344)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCTT------EEEEEE-ECSSHHHHHHHHHTTT---------CEEESSHHHHTTCSC
T ss_pred CceEEEEECC-cHHHHHHHHHHHhCCC------cEEEEE-ECCCHHHHHHHHHHcC---------CceeCCHHHHhcCCC
Confidence 4689999995 9999999999887532 222211 3556666665443221 344555666777 8
Q ss_pred CcEEEEeC
Q 013466 173 AEWALLIG 180 (442)
Q Consensus 173 ADiVIi~a 180 (442)
+|+|+++.
T Consensus 66 ~D~V~i~t 73 (344)
T 3euw_A 66 IDGIVIGS 73 (344)
T ss_dssp CCEEEECS
T ss_pred CCEEEEeC
Confidence 99999974
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.38 Score=45.63 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++... . ++... .| +.
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~----~~r~~~~~~~~~~~l~~~--~---~~~~~~~Dv~d~~~v~~ 94 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGA-----RVFI----CARDAEACADTATRLSAY--G---DCQAIPADLSSEAGARR 94 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHTTS--S---CEEECCCCTTSHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHHhc--C---ceEEEEeeCCCHHHHHH
Confidence 35899999999999999999999874 2544 255556666565555421 1 22221 11 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCc---HHhHHHHHHH----HHHHHHHHHHhhhCC---CeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRG-P--GME---RAGLLDINGQ----IFAEQGKALNAVASR---NVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-p--g~~---r~dll~~N~~----Ii~~i~~~I~~~a~p---~a~vivvtNP 224 (442)
+.+...|++|..+|.... + ..+ -...+..|.. +.+.+.+.+.+. +. .+.||+++--
T Consensus 95 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~~~~g~iV~isS~ 169 (276)
T 2b4q_A 95 LAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRS-ASAENPARVINIGSV 169 (276)
T ss_dssp HHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CCSSSCEEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-cCCCCCCEEEEECCH
Confidence 123478999999886432 1 111 1234555543 345555666553 22 1778888753
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.14 Score=48.43 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~---- 167 (442)
+.+++.|+||+|+||.+++..|+..|. .+.+.. .++.+.++..+.++.... .++.. ..| +.
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-----~Vv~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~ 93 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-----TVVINY---AGKAAAAEEVAGKIEAAG----GKALTAQADVSDPAAVR 93 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-----EEEEEE---SSCSHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEEc---CCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHH
Confidence 345789999999999999999999885 244421 233455555555554321 12221 111 11
Q ss_pred -------cccCCCcEEEEeCCcCC-CCC--Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -------ELFEDAEWALLIGAKPR-GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~~-kpg--~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..||... .+- .+ -...+..|..-...+.+.+..+-...+.||+++--
T Consensus 94 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 163 (267)
T 3u5t_A 94 RLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS 163 (267)
T ss_dssp HHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence 12347899999988643 221 11 12345566554444444443332235678888753
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.19 Score=46.93 Aligned_cols=113 Identities=9% Similarity=0.122 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc--------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~-------- 166 (442)
|++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++.... +.... . ++... .+.
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~-----~V~~----~~r~~~~~~~~~~-l~~~~-~---~~~~~d~~~v~~~~~~~ 66 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGH-----TVAC----HDESFKQKDELEA-FAETY-P---QLKPMSEQEPAELIEAV 66 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE----CCGGGGSHHHHHH-HHHHC-T---TSEECCCCSHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHH-HHhcC-C---cEEEECHHHHHHHHHHH
Confidence 34789999999999999999999874 2444 3555555553332 43211 0 11111 111
Q ss_pred ccccCCCcEEEEeCCcC-C-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 YELFEDAEWALLIGAKP-R-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~-~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|.. . .+- .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 67 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 133 (254)
T 1zmt_A 67 TSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITSA 133 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCS
T ss_pred HHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCc
Confidence 12234789999999865 2 221 121 234455543 444555555553 35677777753
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.19 Score=48.15 Aligned_cols=116 Identities=11% Similarity=-0.002 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh-hHHHHHHHHhcccCCCcccEEE-ecC--cc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~-~l~g~a~DL~~~~~~~~~~v~i-~~~--~~---- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.. ++.+ ..+.....+.... .++.. ..| +.
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-----~V~~~~----r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~ 113 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-----NIAIAY----LDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCK 113 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEE----SSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe----CCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHH
Confidence 35899999999999999999999884 255533 2222 2222222222211 12222 122 11
Q ss_pred -------cccCCCcEEEEeCCcCCCCC----Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -------ELFEDAEWALLIGAKPRGPG----ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~~kpg----~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.....+ .+ -...+..|..-...+.+.+..+-...+.||+++--
T Consensus 114 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~ 184 (291)
T 3ijr_A 114 DIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI 184 (291)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence 12337899999888543211 12 23456667665555666555442245677777753
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.15 Score=48.06 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+... .+++.+.++..+.++.... .++.. ..| +.
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~~r-~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 80 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESV-----NLVLHYH-QAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAK 80 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSC-----EEEEEES-CGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEEec-CccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35789999999999999999999885 2444322 2455566776766665331 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.|++++-..
T Consensus 81 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~ 150 (262)
T 3ksu_A 81 LFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSL 150 (262)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechh
Confidence 12346899999988643221 121 23455666555555555444322356788777643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.093 Score=53.52 Aligned_cols=136 Identities=11% Similarity=-0.008 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-Cc-----ccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~-----~ea 169 (442)
.++|.|+|+ |.+|..++..|...+. ++.+. |.+.++++... + ... .+..+. .+ ...
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~-----~vvvI----d~d~~~v~~~~-~---~g~----~vi~GDat~~~~L~~ag 65 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV-----KMVVL----DHDPDHIETLR-K---FGM----KVFYGDATRMDLLESAG 65 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----ECCHHHHHHHH-H---TTC----CCEESCTTCHHHHHHTT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC-----CEEEE----ECCHHHHHHHH-h---CCC----eEEEcCCCCHHHHHhcC
Confidence 458999995 9999999999999875 35552 55555555332 1 111 122211 11 223
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC-CchhHHHHHHHHHCCCCCcceeeccc
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALT 248 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt-NPvd~lt~~~~k~s~~~p~kvig~gT 248 (442)
+.+||+||++.+. -..| ..++..+++. +|+..||+-+ |+.+. ..+ +..| .+ .+| .-+
T Consensus 66 i~~A~~viv~~~~-----------~~~n----~~i~~~ar~~-~p~~~Iiara~~~~~~--~~L-~~~G-ad-~Vi-~~~ 123 (413)
T 3l9w_A 66 AAKAEVLINAIDD-----------PQTN----LQLTEMVKEH-FPHLQIIARARDVDHY--IRL-RQAG-VE-KPE-RET 123 (413)
T ss_dssp TTTCSEEEECCSS-----------HHHH----HHHHHHHHHH-CTTCEEEEEESSHHHH--HHH-HHTT-CS-SCE-ETT
T ss_pred CCccCEEEECCCC-----------hHHH----HHHHHHHHHh-CCCCeEEEEECCHHHH--HHH-HHCC-CC-EEE-Ccc
Confidence 7899999988541 1233 3344445665 4886655544 45322 223 3343 32 333 333
Q ss_pred hhhHHHHHHHHHHHhCCCcCccc
Q 013466 249 RLDENRAKCQLALKAGVFYDKVS 271 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~ 271 (442)
..-+.++-..+-..+|+++..+.
T Consensus 124 ~~~a~~la~~~L~~lg~~~~~~~ 146 (413)
T 3l9w_A 124 FEGALKTGRLALESLGLGPYEAR 146 (413)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH
Confidence 33456666667778888887765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.46 Score=45.08 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC---------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--------- 165 (442)
-+.+.|.||+++||..++..|+..|. .+.+ .+++++.++..+.++.... .++. +..|
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga-----~Vv~----~~~~~~~~~~~~~~i~~~g----~~~~~~~~Dvt~~~~v~~ 73 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDS-----IVVA----VELLEDRLNQIVQELRGMG----KEVLGVKADVSKKKDVEE 73 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHH
Confidence 34677889999999999999999885 2555 3566778888888776432 1222 1121
Q ss_pred ----cccccCCCcEEEEeCCcC--CCCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 ----PYELFEDAEWALLIGAKP--RGPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ----~~eal~dADiVIi~ag~~--~kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..+.+..-|++|..||.. .+|- ++. ...+..| .-..+...+.+.+. ..+.||+++--
T Consensus 74 ~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IVnisS~ 145 (254)
T 4fn4_A 74 FVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ--GKGVIVNTASI 145 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEech
Confidence 134567899999998853 3432 222 1234444 33566777777774 46888888743
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.059 Score=50.31 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC---CCcccEEE-ecC--ccc-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF---PLLREVKI-GIN--PYE- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~---~~~~~v~i-~~~--~~e- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++..... ....++.. ..| +.+
T Consensus 7 ~k~vlITGasggiG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 7 SALALVTGAGSGIGRAVSVRLAGEGA-----TVAAC----DLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARA 77 (264)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSHHHHHHHHHTC------------CCEEEECCTTSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHH
Confidence 35899999999999999999999874 25442 4455555544443322100 00011222 111 111
Q ss_pred ---ccC-------CC-cEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 ---LFE-------DA-EWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 ---al~-------dA-DiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.++ .. |+||..+|...... .+ -...+..|.. +++...+.+.+. +..+.||+++-.
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 153 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSN-GCRGSIINISSI 153 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCceEEEECCh
Confidence 222 23 99999988653211 11 2234455544 334444444442 225778888764
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.1 Score=48.42 Aligned_cols=112 Identities=12% Similarity=0.016 Sum_probs=64.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc--chhhhHHHHHHHHhcccCCCcccEEEecC-------cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE--RSLQALEGVAMELEDSLFPLLREVKIGIN-------PY 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d--~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~ 167 (442)
++|.|+||+|+||.+++..|+..|. .+.+ .+ + ++.+.++....++ . . .++.-..+ ..
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~--~~-~~~r~~~~~~~~~~~~-~---~--~~~~~~~~v~~~~~~~~ 67 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY-----TVVC--HD-ASFADAAERQRFESEN-P---G--TIALAEQKPERLVDATL 67 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-----EEEE--CC-GGGGSHHHHHHHHHHS-T---T--EEECCCCCGGGHHHHHG
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEE--ec-CCcCCHHHHHHHHHHh-C---C--CcccCHHHHHHHHHHHH
Confidence 4789999999999999999999874 2444 21 3 5556666554444 1 0 01110000 11
Q ss_pred cccCCCcEEEEeCCcCCC----CC--Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ELFEDAEWALLIGAKPRG----PG--ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 eal~dADiVIi~ag~~~k----pg--~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.... +- .+ -...+..|.. +.+...+.+.+. ..+.|++++--
T Consensus 68 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 135 (244)
T 1zmo_A 68 QHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA--GGASVIFITSS 135 (244)
T ss_dssp GGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCG
T ss_pred HHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECCh
Confidence 233468999999886532 21 12 1234555543 444555555552 46788888754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.23 Score=42.11 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=41.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-Ccc-----ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPY-----ELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~~~-----eal 170 (442)
.+|.|+|+ |.+|..++..|...|. ++.+. |+++++++... + . .. .+.... .+. ..+
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~-----~v~vi----d~~~~~~~~~~-~---~--g~--~~i~gd~~~~~~l~~a~i 69 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDI-----PLVVI----ETSRTRVDELR-E---R--GV--RAVLGNAANEEIMQLAHL 69 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC-----CEEEE----ESCHHHHHHHH-H---T--TC--EEEESCTTSHHHHHHTTG
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC-----CEEEE----ECCHHHHHHHH-H---c--CC--CEEECCCCCHHHHHhcCc
Confidence 58999995 9999999999998774 35553 55556555322 1 1 11 122211 111 236
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.+||+||++.+
T Consensus 70 ~~ad~vi~~~~ 80 (140)
T 3fwz_A 70 ECAKWLILTIP 80 (140)
T ss_dssp GGCSEEEECCS
T ss_pred ccCCEEEEECC
Confidence 78999998754
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.028 Score=54.50 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=61.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc----cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----EL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~----ea 169 (442)
|||.|+||+|.||++++..|+..|. .+.+.........+.+... ..+... ++. +..| +. ++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~Dl~~~~~~~~~ 68 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVIILDNLCNSKRSVLPVI-ERLGGK------HPTFVEGDIRNEALMTEI 68 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCTTHHHHH-HHHHTS------CCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEecCCCcchhHHHHH-HhhcCC------cceEEEccCCCHHHHHHH
Confidence 5899999999999999999998774 2443221111111222211 111110 111 1111 12 23
Q ss_pred cC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ +.|+||.+||..... ..+..+.+..|..-...+.+.+.+. + -..|++++
T Consensus 69 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~iv~~S 123 (338)
T 1udb_A 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-N-VKNFIFSS 123 (338)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred hhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-C-CCeEEEEc
Confidence 33 589999998853210 0123456778888888888877764 2 23555554
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.044 Score=53.78 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH-HHHHHHhcccCCCcccEEEecC---c----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN---P----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~-g~a~DL~~~~~~~~~~v~i~~~---~----~ 167 (442)
|++|.|+||+|.||++++..|+..|. .|.+. +++..... ....++.........++.+... + .
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGY-----EVHGI----KRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----CC---------------------CCEEECCCCSSCHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----ECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHH
Confidence 46899999999999999999998773 24432 22222110 0011111000000012332211 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCC--CeEEEEeCC
Q 013466 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGN 223 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p--~a~vivvtN 223 (442)
+++++ .|+||.++|..... ..+....+..|..-...+.+.+.+. +. ...|++++-
T Consensus 72 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS 132 (372)
T 1db3_A 72 RILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQAST 132 (372)
T ss_dssp HHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEE
T ss_pred HHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCC
Confidence 23443 69999998864321 1233455677877788888877774 23 156666664
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.49 Score=44.96 Aligned_cols=115 Identities=16% Similarity=0.046 Sum_probs=72.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~---------- 165 (442)
+.+.|.||+++||.+++..|+..|. .|.+ .+++.+.++..+.++.... . ++... .|
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga-----~Vvi----~~~~~~~~~~~~~~l~~~g-~---~~~~~~~Dv~~~~~v~~~ 76 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGA-----RVIL----NDIRATLLAESVDTLTRKG-Y---DAHGVAFDVTDELAIEAA 76 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----CCSCHHHHHHHHHHHHHTT-C---CEEECCCCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeeCCCHHHHHHH
Confidence 4677889999999999999999885 2555 3666777777777775432 1 12211 11
Q ss_pred ---cccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 166 ---PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 166 ---~~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
-.+.+..-|++|..||... +|- ++. ...++.|. -..+..++.+.+. +..+.||+++--.
T Consensus 77 ~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~~G~IVnisS~~ 148 (255)
T 4g81_D 77 FSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIAR-NSGGKIINIGSLT 148 (255)
T ss_dssp HHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCGG
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-cCCCEEEEEeehh
Confidence 1344667899999888643 331 122 22344453 3456677777554 3578888888543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.33 Score=45.83 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------cchhhhHHHHHHHHhcccCCCcccEEE-ecC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------ERSLQALEGVAMELEDSLFPLLREVKI-GIN 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~ 165 (442)
.+++.|+||+|+||.+++..|+..|. .+.+.+... ..+.+.++..+.++.... .++.. ..|
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D 81 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGA-----DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN----RRIVAAVVD 81 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECC
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-----EEEEEeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEECC
Confidence 35789999999999999999999885 254532210 014455555555554321 12222 111
Q ss_pred --cc-----------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 166 --PY-----------ELFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 166 --~~-----------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ +.+...|++|..+|...... .+. ...+..|. .+++...+.+.+. +..+.||+++
T Consensus 82 ~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~iv~is 160 (277)
T 3tsc_A 82 TRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEG-GRGGSIILIS 160 (277)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCCCEEEEEc
Confidence 11 22346899999988653221 122 22345553 3455666666664 3468888887
Q ss_pred Cch
Q 013466 223 NPC 225 (442)
Q Consensus 223 NPv 225 (442)
--.
T Consensus 161 S~~ 163 (277)
T 3tsc_A 161 SAA 163 (277)
T ss_dssp CGG
T ss_pred cHh
Confidence 643
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.17 Score=47.79 Aligned_cols=116 Identities=9% Similarity=0.074 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----e 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.++++..+.++.... ....++.. ..| +. +
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~ 75 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGA-----KVTIT----GRHAERLEETRQQILAAG-VSEQNVNSVVADVTTDAGQDE 75 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcc-cCCCceeEEecccCCHHHHHH
Confidence 35789999999999999999999874 25442 455566665555552111 01112322 122 11 2
Q ss_pred cc-------CCCcEEEEeCCcCCCCC---C----cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LF-------EDAEWALLIGAKPRGPG---M----ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al-------~dADiVIi~ag~~~kpg---~----~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+ .+.|++|..+|...... . +. ...+..|.. +.+...+.+.+. . +.|++++.-
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~-g~iv~isS~ 149 (278)
T 1spx_A 76 ILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--K-GEIVNISSI 149 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--C-CeEEEEecc
Confidence 23 37999999988643111 1 21 223445533 344444555442 2 677777653
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.0052 Score=56.52 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|||+ |.+|..++..|...+. .+.++ +++.+ .+. +... .+... +..++++++|
T Consensus 18 ~~~~I~iIG~-G~mG~~la~~L~~~G~-----~V~~~----~r~~~-~~~----~~~~------g~~~~-~~~~~~~~aD 75 (201)
T 2yjz_A 18 KQGVVCIFGT-GDFGKSLGLKMLQCGY-----SVVFG----SRNPQ-VSS----LLPR------GAEVL-CYSEAASRSD 75 (201)
Confidence 3468999995 9999999999987663 24442 44333 221 1110 12222 4567889999
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||++.
T Consensus 76 vVilav 81 (201)
T 2yjz_A 76 VIVLAV 81 (201)
Confidence 999874
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.35 Score=45.75 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--------hhhhHHHHHHHHhcccCCCcccEEE-ecC-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--------SLQALEGVAMELEDSLFPLLREVKI-GIN- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~--------~~~~l~g~a~DL~~~~~~~~~~v~i-~~~- 165 (442)
.+++.|+||+|+||.+++..|+..|. .+.+...+.+. ..+.++....++.... .++.. ..|
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv 80 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGA-----DIAICDRCENSDVVGYPLATADDLAETVALVEKTG----RRCISAKVDV 80 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT----CCEEEEECCT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----eEEEEeCCccccccccccccHHHHHHHHHHHHhcC----CeEEEEeCCC
Confidence 35889999999999999999999885 25553221000 1334444444443221 12221 111
Q ss_pred -cc-----------cccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 -PY-----------ELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 -~~-----------eal~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+. +.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS 158 (281)
T 3s55_A 81 KDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR--NYGRIVTVSS 158 (281)
T ss_dssp TCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECC
Confidence 11 22347899999988643 22 1222 234455543 445555555553 4678888875
Q ss_pred c
Q 013466 224 P 224 (442)
Q Consensus 224 P 224 (442)
-
T Consensus 159 ~ 159 (281)
T 3s55_A 159 M 159 (281)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.17 Score=47.73 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~-~~~~l~g~a~DL~ 150 (442)
++|.|+||+|+||.+++..|+..|. .|.+. ++ +.+.++..+.++.
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~ 57 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGF-----RVVVH----YRHSEGAAQRLVAELN 57 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCChHHHHHHHHHHH
Confidence 5799999999999999999999874 25442 44 5555665555554
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.012 Score=56.28 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCce-EEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I-~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
|+||+|||+ |.+|..++..|... + ++ .++ |++.++++..+..+ + . ...+..+.++++|
T Consensus 2 ~m~I~iIG~-G~mG~~la~~l~~~--~----~v~~v~----~~~~~~~~~~~~~~-----g----~-~~~~~~~~~~~~D 60 (276)
T 2i76_A 2 SLVLNFVGT-GTLTRFFLECLKDR--Y----EIGYIL----SRSIDRARNLAEVY-----G----G-KAATLEKHPELNG 60 (276)
T ss_dssp --CCEEESC-CHHHHHHHHTTC----------CCCEE----CSSHHHHHHHHHHT-----C----C-CCCSSCCCCC---
T ss_pred CceEEEEeC-CHHHHHHHHHHHHc--C----cEEEEE----eCCHHHHHHHHHHc-----C----C-ccCCHHHHHhcCC
Confidence 468999995 99999999988765 2 14 242 55556555443222 1 1 2234456788999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||++..
T Consensus 61 vVilav~ 67 (276)
T 2i76_A 61 VVFVIVP 67 (276)
T ss_dssp CEEECSC
T ss_pred EEEEeCC
Confidence 9998743
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.043 Score=55.33 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHH-HHHHcCCCCCCCceEEEeccccchhhhHHHHH-HHHhcccCCCcccEEEe-cCcccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIG-INPYELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~-~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a-~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (442)
+||+|+||+|.+|..+.. .|...+... +.+.++... + .|.. .++.. ....+. ..+.+.++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~----~~l~~~ss~-~----aG~~~~~~~~------~~~~~~~~~~~~~~~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDL----IEPVFFSTS-Q----IGVPAPNFGK------DAGMLHDAFDIESLKQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGG----SEEEEEESS-S----TTSBCCCSSS------CCCBCEETTCHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCc----eEEEEEecc-c----cCcCHHHhCC------CceEEEecCChhHhccC
Confidence 589999999999999999 777776421 344444222 1 1110 01110 011121 2234668999
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||++.|
T Consensus 66 Dvvf~a~~ 73 (370)
T 3pzr_A 66 DAVITCQG 73 (370)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999866
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.065 Score=52.15 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=44.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFE 171 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~ 171 (442)
+.+++||+|+||+|.+|+.++..+...+- +.|.-. .|++.... ...|+.... .. ...+.++.+..+.+.
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~------~eLvg~-vd~~~~~~--~G~d~gel~-G~~~~gv~v~~dl~~ll~ 87 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKD------VELCAV-LVRKGSSF--VDKDASILI-GSDFLGVRITDDPESAFS 87 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSS------EEEEEE-BCCTTCTT--TTSBGGGGT-TCSCCSCBCBSCHHHHTT
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCC------CEEEEE-EecCCccc--cccchHHhh-ccCcCCceeeCCHHHHhc
Confidence 44578999999889999999999887543 333222 23332111 112222111 11 124556666667788
Q ss_pred CCcEEEEe
Q 013466 172 DAEWALLI 179 (442)
Q Consensus 172 dADiVIi~ 179 (442)
++|+||-.
T Consensus 88 ~aDVvIDF 95 (288)
T 3ijp_A 88 NTEGILDF 95 (288)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEEc
Confidence 99999854
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.026 Score=52.95 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+.++..+.++.. ++.. ..| +
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~ 70 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGA-----TVLGL----DLKPPAGEEPAAELGA-------AVRFRNADVTNEADATA 70 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCC-------------------CEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHhCC-------ceEEEEccCCCHHHHHH
Confidence 35789999999999999999999884 25443 4444444444333311 1111 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCCCCC-------CcH---HhHHHHHHH----HHHHHHHHHHhhh----CCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPRGPG-------MER---AGLLDINGQ----IFAEQGKALNAVA----SRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~kpg-------~~r---~dll~~N~~----Ii~~i~~~I~~~a----~p~a~vivvtN 223 (442)
.+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+.. ...+.|++++-
T Consensus 71 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS 150 (257)
T 3tpc_A 71 ALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS 150 (257)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence 122337999999988643211 111 233455543 3344444444310 13577888875
Q ss_pred c
Q 013466 224 P 224 (442)
Q Consensus 224 P 224 (442)
.
T Consensus 151 ~ 151 (257)
T 3tpc_A 151 I 151 (257)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.0097 Score=59.48 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=41.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----ccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YEL 169 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~ea 169 (442)
.+.|||.|+|| |.||+.++..|.... .+.+. |++.++++.. .+. ...+.+-..+ .+.
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~~~------~v~~~----~~~~~~~~~~----~~~----~~~~~~d~~d~~~l~~~ 74 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKDEF------DVYIG----DVNNENLEKV----KEF----ATPLKVDASNFDKLVEV 74 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTTTS------EEEEE----ESCHHHHHHH----TTT----SEEEECCTTCHHHHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHhcCC------CeEEE----EcCHHHHHHH----hcc----CCcEEEecCCHHHHHHH
Confidence 35679999997 999999999886532 35553 4444555432 111 1122221222 456
Q ss_pred cCCCcEEEEeCC
Q 013466 170 FEDAEWALLIGA 181 (442)
Q Consensus 170 l~dADiVIi~ag 181 (442)
++++|+||.+.+
T Consensus 75 ~~~~DvVi~~~p 86 (365)
T 3abi_A 75 MKEFELVIGALP 86 (365)
T ss_dssp HTTCSEEEECCC
T ss_pred HhCCCEEEEecC
Confidence 799999999865
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.28 Score=45.58 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcc--------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY-------- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~-------- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++....++. .. -+..-..+.
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~-~~-----~~~~D~~~~~~~~~~~~ 69 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGA-----RLVAC----DIEEGPLREAAEAVG-AH-----PVVMDVADPASVERGFA 69 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTT-CE-----EEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHcC-CE-----EEEecCCCHHHHHHHHH
Confidence 35899999999999999999999874 24442 455555554433221 00 000001111
Q ss_pred ---cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHHH----HHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ---ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFA----EQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ---eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii~----~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+ -...+..|..-.. ...+.+.+. ..+.|++++.-
T Consensus 70 ~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 137 (245)
T 1uls_A 70 EALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTASR 137 (245)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECCG
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEEccc
Confidence 12335899999988653211 11 1234555654333 334444432 35778888754
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.12 Score=48.73 Aligned_cols=114 Identities=15% Similarity=0.028 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----e 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++.....+.... .++.. ..| +. +
T Consensus 34 ~k~vlITGasggIG~~la~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~ 100 (279)
T 3ctm_A 34 GKVASVTGSSGGIGWAVAEAYAQAGA-----DVAIW----YNSHPADEKAEHLQKTYG----VHSKAYKCNISDPKSVEE 100 (279)
T ss_dssp TCEEEETTTTSSHHHHHHHHHHHHTC-----EEEEE----ESSSCCHHHHHHHHHHHC----SCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC----CcceEEEeecCCHHHHHH
Confidence 45899999999999999999999874 25443 333333443333332211 11221 111 11 1
Q ss_pred c-------cCCCcEEEEeCCcCCC--C---CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 L-------FEDAEWALLIGAKPRG--P---GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 a-------l~dADiVIi~ag~~~k--p---g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
. +...|+||..+|.... + ..+. ...+..|..- .+.+.+.+.+. ..+.|++++--
T Consensus 101 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~~~iv~isS~ 173 (279)
T 3ctm_A 101 TISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN--GKGSLIITSSI 173 (279)
T ss_dssp HHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred HHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCeEEEECch
Confidence 2 2348999999886432 1 1111 2344555443 55666666663 35667777643
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.016 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|+||.|+||+|.+|++++..|+..|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~ 27 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN 27 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC
Confidence 56899999999999999999998873
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.48 Score=45.31 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.++|.|+||+|+||.+++..|+..|.-. -.+.+ .+++.+.++..+.++.... + ..++.. ..| +
T Consensus 33 ~k~~lVTGas~GIG~aia~~l~~~G~~~--~~V~~----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~d~~~v~~ 104 (287)
T 3rku_A 33 KKTVLITGASAGIGKATALEYLEASNGD--MKLIL----AARRLEKLEELKKTIDQEF-P-NAKVHVAQLDITQAEKIKP 104 (287)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHHHTTC--SEEEE----EESCHHHHHHHHHHHHHHC-T-TCEEEEEECCTTCGGGHHH
T ss_pred CCEEEEecCCChHHHHHHHHHHHcCCCC--ceEEE----EECCHHHHHHHHHHHHhhC-C-CCeEEEEECCCCCHHHHHH
Confidence 3589999999999999999999876411 02444 2556667776666665321 1 012221 111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC--CC--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFEDAEWALLIGAKPR--GP--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~--kp--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..||... .+ ..+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 105 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 176 (287)
T 3rku_A 105 FIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK--NSGDIVNLGSI 176 (287)
T ss_dssp HHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECCh
Confidence 223347899999988643 22 1121 234455533 445555555553 45777777753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.56 Score=44.02 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... +. .++.. ..| +.
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGA-----AVAFC----ARDGERLRAAESALRQRF-PG-ARLFASVCDVLDALQVRA 76 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHS-TT-CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhc-CC-ceEEEEeCCCCCHHHHHH
Confidence 35789999999999999999999885 25552 556667776666665421 11 11222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+..-|++|..+|.... + ..+. ...+..|..- .+...+.+.+ ...+.|++++-.
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~~~g~iv~isS~ 147 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLES--RADAAIVCVNSL 147 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--STTEEEEEEEEG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCeEEEEECCc
Confidence 223468999999886432 2 1222 2345556443 4444444444 246777777643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.2 Score=47.76 Aligned_cols=120 Identities=19% Similarity=0.115 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC-CcccEEEe-cC--cccc--
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKIG-IN--PYEL-- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~-~~~~v~i~-~~--~~ea-- 169 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.....+ ...++... .| +.+.
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGS-----NVVIA----SRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 35899999999999999999999874 25442 45556666666666431100 01123322 11 1121
Q ss_pred ---------cCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhh-h-CCCeEEEEeCCc
Q 013466 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAV-A-SRNVKVIVVGNP 224 (442)
Q Consensus 170 ---------l~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~-a-~p~a~vivvtNP 224 (442)
+...|+||..||...... .+. ...+..|..-...+.+.+... . ...+.|++++-.
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 160 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP 160 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence 235899999988543111 122 234556654444444432221 0 125677777654
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=94.63 E-value=0.35 Score=45.93 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~-~~l~g~a~DL~ 150 (442)
.+++.|+||+|+||.+++..|+..|. .|.+. +++. +.++..+.++.
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~l~ 69 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGY-----RVVIH----YHNSAEAAVSLADELN 69 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTC-----EEEEE----ESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----eEEEE----eCCchHHHHHHHHHHH
Confidence 35799999999999999999999884 25553 4444 55555555553
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.07 Score=49.21 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc----c-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY----E- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~----e- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++... ++ +..| +. +
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~------~~-~~~D~~~~~~~~~~ 70 (244)
T 3d3w_A 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVAV----SRTQADLDSLVRECPGI------EP-VCVDLGDWEATERA 70 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHSTTC------EE-EECCTTCHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHcCCC------CE-EEEeCCCHHHHHHH
Confidence 35899999999999999999999874 24442 44545554443332211 11 1111 11 1
Q ss_pred --ccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 169 --LFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 169 --al~dADiVIi~ag~~~kpg---~~---r~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+...|+||..+|...... .+ -...+..|..- .+...+.+.+. +..+.|++++...
T Consensus 71 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~~iv~~sS~~ 138 (244)
T 3d3w_A 71 LGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQC 138 (244)
T ss_dssp HTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCGG
T ss_pred HHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCcEEEEeCchh
Confidence 2235899999988643211 11 12345556444 33444444442 2257788887643
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.064 Score=55.62 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=62.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh---hHHHHHHHHhccc-----CCCcccEEEecC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSL-----FPLLREVKIGIN 165 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~---~l~g~a~DL~~~~-----~~~~~~v~i~~~ 165 (442)
..+++|.|+||+|.||++++..|...+. .|.. + .++.. .+..+...|.... .....++.+..+
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~-----~V~~--l--~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~ 218 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSH-----RIYC--F--IRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG 218 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEE-----EEEE--E--EESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEE
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCC-----EEEE--E--ECCCChHHHHHHHHHHHHHhcccccchhccCceEEEec
Confidence 3468999999999999999999955442 2332 2 22222 2222222221110 000112333211
Q ss_pred c------ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 166 P------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 166 ~------~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+ ...+.++|+||.+|+... ...+..++...|+.-...+++.+.+ . ...++.++
T Consensus 219 Dl~d~~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~--~~~~v~iS 277 (508)
T 4f6l_B 219 DFECMDDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H--HARLIYVS 277 (508)
T ss_dssp BTTBCSSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T--TCEEEEEE
T ss_pred CCcccccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C--CCcEEEeC
Confidence 1 115679999999988543 2234455677788888888888776 2 23455544
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.05 Score=51.86 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++... .++.. ..| +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~ 87 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW-----SLVLT----GRREERLQALAGELSAK-----TRVLPLTLDVRDRAAMSAA 87 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhhcC-----CcEEEEEcCCCCHHHHHHH
Confidence 5799999999999999999999874 25442 55556666665555421 11221 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCe-EEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNV-KVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a-~vivvtNP 224 (442)
.+.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+ .|++++--
T Consensus 88 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~~IV~isS~ 159 (272)
T 2nwq_A 88 VDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH--GAGASIVNLGSV 159 (272)
T ss_dssp HHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CTTCEEEEECCG
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeCCc
Confidence 122345699999988643 221 121 223455533 355555666553 234 77777753
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.16 Score=47.26 Aligned_cols=117 Identities=10% Similarity=-0.017 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-----
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----- 166 (442)
+..+|.|+||+|+||.+++..|+..|. .+.+.. .++.+..+....++.... . ++.. ..| +
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~-----~v~~~~---~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~ 79 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGF-----RVVAGC---GPNSPRRVKWLEDQKALG-F---DFYASEGNVGDWDSTK 79 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTE-----EEEEEE---CTTCSSHHHHHHHHHHTT-C---CCEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHhcC-C---eeEEEecCCCCHHHHH
Confidence 356899999999999999999999884 243322 133344444444443221 1 1221 111 1
Q ss_pred ------ccccCCCcEEEEeCCcCCCC---CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ------YELFEDAEWALLIGAKPRGP---GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ------~eal~dADiVIi~ag~~~kp---g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+...|++|..+|..... ..+. ...+..|.. +.+.+.+.+.+. ..+.|++++-..
T Consensus 80 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~~ 152 (256)
T 3ezl_A 80 QAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER--GWGRIINISSVN 152 (256)
T ss_dssp HHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCCC
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcchh
Confidence 12233679999998865321 1221 234555544 355555656653 457788887643
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.27 Score=45.69 Aligned_cols=111 Identities=12% Similarity=0.007 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hhHHHHHHHHhcccCCCcccEEE-ecC--cccc--
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKI-GIN--PYEL-- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~-~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea-- 169 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++. +.++. ++.... .++.. ..| +.+.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~---~~~~~~----~~~~~~~~Dv~~~~~v~ 70 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGA-----DIAIA----DLVPAPEAEA---AIRNLG----RRVLTVKCDVSQPGDVE 70 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCCHHHHH---HHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----cCCchhHHHH---HHHhcC----CcEEEEEeecCCHHHHH
Confidence 35799999999999999999999874 25443 3443 34432 222111 12221 111 1222
Q ss_pred ---------cCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 ---------FEDAEWALLIGAKPRGPG---MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 ---------l~dADiVIi~ag~~~kpg---~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|++|..+|...... .+. ...+..|..- .+.+.+.+.+. ..+.|++++-.
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 142 (249)
T 2ew8_A 71 AFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTST 142 (249)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCeEEEEEcch
Confidence 357899999988643211 121 2345555443 45555556653 35778887754
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.15 Score=47.32 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~ 39 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGA 39 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999999874
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.041 Score=55.86 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCC-CCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVL-GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~-~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal 170 (442)
|+||+|+|| |+||..++..|+..+-+ . .+.+ .+++.++++..+.++..........+..-..+ .+.+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~---~V~v----~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l 72 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFS---HITL----ASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALI 72 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCC---EEEE----EESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCce---EEEE----EECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHH
Confidence 569999997 99999999999987632 2 2555 36667777777776653210000011111112 2345
Q ss_pred CC--CcEEEEeCC
Q 013466 171 ED--AEWALLIGA 181 (442)
Q Consensus 171 ~d--ADiVIi~ag 181 (442)
++ +|+||.+++
T Consensus 73 ~~~~~DvVin~ag 85 (405)
T 4ina_A 73 NEVKPQIVLNIAL 85 (405)
T ss_dssp HHHCCSEEEECSC
T ss_pred HhhCCCEEEECCC
Confidence 55 899999876
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.27 Score=46.12 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~------ 167 (442)
++|.|+||+|+||.+++..|+..|. .+.+. ..++.+.++....++.... . ++.+. .| +.
T Consensus 27 k~vlVTGas~gIG~~la~~l~~~G~-----~v~i~---~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dl~~~~~~~~~ 94 (267)
T 4iiu_A 27 RSVLVTGASKGIGRAIARQLAADGF-----NIGVH---YHRDAAGAQETLNAIVANG-G---NGRLLSFDVANREQCREV 94 (267)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE---ESSCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-----EEEEE---eCCchHHHHHHHHHHHhcC-C---ceEEEEecCCCHHHHHHH
Confidence 5799999999999999999999885 24332 1344455555555554321 1 22221 11 11
Q ss_pred -----cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -----ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+ -...+..|.. +++.....+.+. ...+.||+++-.
T Consensus 95 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~g~iv~isS~ 165 (267)
T 4iiu_A 95 LEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGA-RQGGRIITLSSV 165 (267)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCH
T ss_pred HHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEEcch
Confidence 12237899999988654221 12 2234455543 333334444432 357888888753
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.075 Score=49.72 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
.++++|.|+||+|+||.+++..|+..|
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G 45 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLP 45 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcC
Confidence 445789999999999999999999887
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.24 Score=46.66 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+... .+.+.++....++.... .++.+ ..| +.
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~-----~V~~~~r---~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~ 96 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTLASMGL-----KVWINYR---SNAEVADALKNELEEKG----YKAAVIKFDAASESDFIE 96 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEEES---SCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeC---CCHHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHH
Confidence 45899999999999999999999875 2444321 13344444444443221 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.|++++-.
T Consensus 97 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 167 (271)
T 4iin_A 97 AIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS--RFGSVVNVASI 167 (271)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc--CCCEEEEEech
Confidence 11237899999988654221 12 1234445533 445555555553 45778887753
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.33 Score=46.57 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc--------cchhhhHHHHHHHHhcccCCCcccEEE-ecC-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--------ERSLQALEGVAMELEDSLFPLLREVKI-GIN- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~--------d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~- 165 (442)
.+++.|+||+|+||.+++..|+..|. .+.+.+.+. .++.+.++..+.++.... .++.. ..|
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv 98 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGA-----DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG----RRIIASQVDV 98 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEecccccccccccccCHHHHHHHHHHHHhcC----CceEEEECCC
Confidence 35788999999999999999999885 254432210 012455555555554321 12222 111
Q ss_pred -cc-----------cccCCCcEEEEeCCcCCCCC----CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 166 -PY-----------ELFEDAEWALLIGAKPRGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 166 -~~-----------eal~dADiVIi~ag~~~kpg----~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+. +.+...|++|..+|...... .+. ...+..|. .+.+...+.+.+. ...+.|++++
T Consensus 99 ~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~~g~Iv~is 177 (299)
T 3t7c_A 99 RDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG-KRGGSIVFTS 177 (299)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEEC
Confidence 11 12347899999888643211 222 23445553 3445555555553 3468888887
Q ss_pred Cc
Q 013466 223 NP 224 (442)
Q Consensus 223 NP 224 (442)
--
T Consensus 178 S~ 179 (299)
T 3t7c_A 178 SI 179 (299)
T ss_dssp CG
T ss_pred Ch
Confidence 54
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.02 Score=54.47 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC--Cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--AD 174 (442)
|||.|+||+|.||++++..|+ .|. .|.. + +++... +..|+.+. ....+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~-----~V~~--~--~r~~~~---~~~D~~d~-----------~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVG-----NLIA--L--DVHSKE---FCGDFSNP-----------KGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTS-----EEEE--E--CTTCSS---SCCCTTCH-----------HHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCC-----eEEE--e--cccccc---ccccCCCH-----------HHHHHHHHhcCCC
Confidence 489999999999999999998 653 2433 2 332210 11111111 011234554 99
Q ss_pred EEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||.+++..... ..+..+.+..|..-...+.+.+.+. + ..++.+|-
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~--~~~v~~SS 104 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G--AWVVHYST 104 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T--CEEEEEEE
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEec
Confidence 999998854311 1244566788888888888887764 2 36666653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.072 Score=57.56 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCc----ccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP----YEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~----~ea 169 (442)
+++||.|+||+|.||++++..|+..|. .|.+.....+...+.+... ..+.... . .+... ..+ .++
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~-----~V~~~~r~~~~~~~~~~~l-~~~~~~~--v--~~v~~Dl~d~~~l~~~ 79 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGY-----DCVVADNLSNSTYDSVARL-EVLTKHH--I--PFYEVDLCDRKGLEKV 79 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCTHHHHHH-HHHHTSC--C--CEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEEEECCCcchHHHHHHH-hhccCCc--e--EEEEcCCCCHHHHHHH
Confidence 357999999999999999999998773 2444221111111111111 1111110 0 11111 111 234
Q ss_pred cC--CCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~--dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ ++|+||.+|+...... ....+.+..|+.-...+++.+.+. + -..||.+|
T Consensus 80 ~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~-~~~iV~~S 134 (699)
T 1z45_A 80 FKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-N-VSKFVFSS 134 (699)
T ss_dssp HHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred HHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEEC
Confidence 55 7999999988542110 122456778888888888887774 2 23555555
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.12 Score=50.04 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc---CCCCCCCceEEEecccc-chhhhHHHHHHHHhcccCCCcccEEEe-cC--c---
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG---EVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIG-IN--P--- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~---~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~--- 166 (442)
|||.|+||+|.||++++..|+.. +.... .|........ .+.+.+. ++.. ..++.+. .| +
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~----~~~~-----~~~~~~~~~Dl~d~~~ 69 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLA----PVDA-----DPRLRFVHGDIRDAGL 69 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGG----GGTT-----CTTEEEEECCTTCHHH
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhh----hccc-----CCCeEEEEcCCCCHHH
Confidence 58999999999999999999985 41001 2433211100 0111111 1110 0122221 11 1
Q ss_pred -ccccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 -YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 -~eal~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+++.++|+||.+++..... ..+..+.+..|..-...+.+.+.+. + -..|+.++
T Consensus 70 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~-~~~~v~~S 126 (337)
T 1r6d_A 70 LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-G-VGRVVHVS 126 (337)
T ss_dssp HHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-T-CCEEEEEE
T ss_pred HHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 24567899999998853210 0122356778888888888888774 2 23565555
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.12 Score=53.38 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=66.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC------------CcccEE
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP------------LLREVK 161 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~------------~~~~v~ 161 (442)
.++++|.|+||+|.||++++..|+..+-.+. .|.+. +++.+...+. ..+.+.... ...++.
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l----~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 143 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICL----VRAESDEDAR-RRLEKTFDSGDPELLRHFKELAADRLE 143 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEE----ECSSSHHHHH-HHHHGGGCSSCHHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEE----ECCCCcHHHH-HHHHHHHHhcchhhhhhhhhhccCceE
Confidence 3578999999999999999999998732111 24332 2222222111 111111100 001333
Q ss_pred EecCc-------------ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 162 IGINP-------------YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 162 i~~~~-------------~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+...+ .+.++++|+||.+++.... ....+.+..|+.-...+++.+.+. +.. .++.++
T Consensus 144 ~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~~V~iS 213 (478)
T 4dqv_A 144 VVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTT-KLK-PFTYVS 213 (478)
T ss_dssp EEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSS-SCC-CEEEEE
T ss_pred EEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhC-CCC-eEEEEe
Confidence 32222 2345689999999886432 233356778888888888877764 232 344444
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.048 Score=53.05 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|.|+|| |++|..++..|+..|. ..|.+ .+++.++++.++.++.... . .+....+..+.++++|+
T Consensus 141 ~~~vlVlGa-Gg~g~aia~~L~~~G~----~~V~v----~nR~~~ka~~la~~~~~~~-~---~~~~~~~~~~~~~~aDi 207 (297)
T 2egg_A 141 GKRILVIGA-GGGARGIYFSLLSTAA----ERIDM----ANRTVEKAERLVREGDERR-S---AYFSLAEAETRLAEYDI 207 (297)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTC----SEEEE----ECSSHHHHHHHHHHSCSSS-C---CEECHHHHHHTGGGCSE
T ss_pred CCEEEEECc-HHHHHHHHHHHHHCCC----CEEEE----EeCCHHHHHHHHHHhhhcc-C---ceeeHHHHHhhhccCCE
Confidence 469999996 9999999999998774 13555 3667777777766553210 0 11111123567899999
Q ss_pred EEEeCCcCCC
Q 013466 176 ALLIGAKPRG 185 (442)
Q Consensus 176 VIi~ag~~~k 185 (442)
||.+.+.+..
T Consensus 208 vIn~t~~~~~ 217 (297)
T 2egg_A 208 IINTTSVGMH 217 (297)
T ss_dssp EEECSCTTCS
T ss_pred EEECCCCCCC
Confidence 9998765543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.13 Score=47.45 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhhHHHHHHHHhcccCCCcccEEEe-cC--cc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIG-IN--PY---- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~-~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~---- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++ .+.++....++.... .++... .| +.
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 73 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGA-----KVGLH----GRKAPANIDETIASMRADG----GDAAFFAADLATSEACQ 73 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESSCCTTHHHHHHHHHHTT----CEEEEEECCTTSHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----CCCchhhHHHHHHHHHhcC----CceEEEECCCCCHHHHH
Confidence 35899999999999999999999874 24442 334 455555555453211 122221 11 11
Q ss_pred cccC-------CCcEEEEeCCc
Q 013466 168 ELFE-------DAEWALLIGAK 182 (442)
Q Consensus 168 eal~-------dADiVIi~ag~ 182 (442)
+.++ +.|+||..+|.
T Consensus 74 ~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 74 QLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 2222 79999999885
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.077 Score=51.37 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--CcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--~~~eal~dA 173 (442)
..++.|+|| |++|.+++..|+..|. ..|.+ .+++.++++..+.++.... +. .++.... +..+.++++
T Consensus 127 ~k~vlVlGa-GG~g~aia~~L~~~G~----~~v~i----~~R~~~~a~~la~~~~~~~-~~-~~i~~~~~~~l~~~l~~~ 195 (283)
T 3jyo_A 127 LDSVVQVGA-GGVGNAVAYALVTHGV----QKLQV----ADLDTSRAQALADVINNAV-GR-EAVVGVDARGIEDVIAAA 195 (283)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----ECSSHHHHHHHHHHHHHHH-TS-CCEEEECSTTHHHHHHHS
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC----CEEEE----EECCHHHHHHHHHHHHhhc-CC-ceEEEcCHHHHHHHHhcC
Confidence 468999996 9999999999999875 23555 3677788887777775332 11 1233332 345677899
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+||.+-
T Consensus 196 DiVInaT 202 (283)
T 3jyo_A 196 DGVVNAT 202 (283)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9999864
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.29 Score=46.14 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .+.+.+ .++.+.++..+.++.... .++.. ..| +.
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~-----~V~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 85 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGA-----KVVVNY---ANSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVK 85 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEEc---CCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35789999999999999999999885 244422 223344555555554321 12222 112 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.|++++.-
T Consensus 86 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 154 (270)
T 3is3_A 86 LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN 154 (270)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 12336899999988653211 122 2345666554445555444432235677777653
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.069 Score=50.65 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~-----~Vi~----~~r~~~~~~~~~~~~ 74 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL-----GVVI----ADLAAEKGKALADEL 74 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE----EeCChHHHHHHHHHh
Confidence 35788999999999999999999885 2544 355666666665555
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.23 Score=46.70 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.+++.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.... .++.. ..| +.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGA-----DLVL----AARTVERLEDVAKQVTDTG----RRALSVGTDITDDAQVAH 77 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHH
Confidence 35789999999999999999999885 2555 2556677776766665321 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcC--CCCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~--~kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.. .++- .+. ...+..|.. +.+...+.+.+. .+.||+++--
T Consensus 78 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~---~g~iv~isS~ 148 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES---KGAVVNVNSM 148 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH---TCEEEEECCG
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 2234789999988753 2221 122 223444533 344444555542 3677777653
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=94.37 E-value=0.19 Score=47.78 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
.++|.|+||+|+||.+++..|+..|. .|.+ .+++.+.++..+.++.
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 73 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCL 73 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 45899999999999999999999874 2544 2555566665554443
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.28 Score=47.73 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
..+|.|+||+|+||.+++..|+..|. .|.+ .+++.++++....++.... ...++.+ ..| +.+
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~-----~Vv~----~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGC-----KVAI----ADIRQDSIDKALATLEAEG--SGPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHT--CGGGEEEEECCTTCHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC--CCCeEEEEECCCCCHHHHHH
Confidence 35899999999999999999999885 2545 3556666666665554321 1112222 111 111
Q ss_pred c-------cCCCcEEEEeCCcCCC-CC--Cc---HHhHHHHHHH----HHHHHHHHHHhh----hCCCeEEEEeCCc
Q 013466 169 L-------FEDAEWALLIGAKPRG-PG--ME---RAGLLDINGQ----IFAEQGKALNAV----ASRNVKVIVVGNP 224 (442)
Q Consensus 169 a-------l~dADiVIi~ag~~~k-pg--~~---r~dll~~N~~----Ii~~i~~~I~~~----a~p~a~vivvtNP 224 (442)
+ +...|+||..+|.... |- .+ -.+.+..|.. +++.+.+.+.+. ....+.|++++--
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~ 153 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM 153 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence 1 2366999999986432 21 11 2234555533 344444544432 0135677777754
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.23 Score=46.63 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.. +++.+.++....++.... . ++. +..| +.+
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~-----~V~~~~---~~~~~~~~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 75 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGA-----NVVLTY---NGAAEGAATAVAEIEKLG-R---SALAIKADLTNAAEVEA 75 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEE---CSSCHHHHHHHHHHHTTT-S---CCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEEc---CCCHHHHHHHHHHHHhcC-C---ceEEEEcCCCCHHHHHH
Confidence 45899999999999999999999885 244421 334445555555554321 1 122 2121 111
Q ss_pred -------ccCCCcEEEEeCCcC--CCCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~--~kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|.. .++- .+. ...+..|..-...+.+.+..+-...+.|++++-.
T Consensus 76 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 145 (259)
T 3edm_A 76 AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQ 145 (259)
T ss_dssp HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCH
Confidence 223689999988753 2221 222 3345667555555555555432235677777753
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.31 Score=46.04 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.+. .+.+.++....++.... .++.. ..| +.
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~-----~V~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~D~~d~~~v~~ 95 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGA-----KVAVNYA---SSAGAADEVVAAIAAAG----GEAFAVKADVSQESEVEA 95 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEEES---SCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEeC---CChHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHH
Confidence 35788999999999999999999885 2444221 13445555555554321 12221 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..||...... .+. ...+..|.. +.+...+.+.+. ..+.||+++-
T Consensus 96 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS 165 (269)
T 4dmm_A 96 LFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ--RSGRIINIAS 165 (269)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECc
Confidence 12337899999988653221 121 223445533 345555555553 4577777774
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.57 Score=43.38 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 5 ~k~vlVtGas~gIG~~~a~~l~~~G~ 30 (254)
T 1sby_A 5 NKNVIFVAALGGIGLDTSRELVKRNL 30 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCC
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999999874
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.024 Score=53.19 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=63.0
Q ss_pred cCCCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc--
Q 013466 94 KKMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY-- 167 (442)
Q Consensus 94 ~~~~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~-- 167 (442)
.+.++|.|+||+ |+||.+++..|+..|. .+.+...+ +...+.++....+.... . .+..| +.
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-----~V~~~~r~-~~~~~~~~~~~~~~~~~------~-~~~~Dv~~~~~ 78 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-----ELAFTYVG-DRFKDRITEFAAEFGSE------L-VFPCDVADDAQ 78 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-----EEEEEESS-GGGHHHHHHHHHHTTCC------C-EEECCTTCHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-----CEEEEecc-hhhHHHHHHHHHHcCCc------E-EEECCCCCHHH
Confidence 345799999998 9999999999999885 25554332 22223333332222111 0 11111 11
Q ss_pred ---------cccCCCcEEEEeCCcCCC-----CC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ---------ELFEDAEWALLIGAKPRG-----PG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ---------eal~dADiVIi~ag~~~k-----pg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+..-|++|..+|.... +- .+. ...+..|..-...+.+.+..+-.+.+.|++++-
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 79 IDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp HHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 122367999999886431 11 221 234555655455555554443223567777764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.022 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
|+||.|+||+|.+|++++..|+..|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g 28 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS 28 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC
Confidence 5689999999999999999999977
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.013 Score=54.48 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.++|.|+||+|+||.+++..|+..|.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~ 32 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNW 32 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC
Confidence 346899999999999999999999874
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.056 Score=54.59 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCchHHHHHH-HHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLF-KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~-~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dA 173 (442)
.+||+|+||+|.+|..+.. .|...+... +.+..+... +..+ ...|+... ...+. ..+.+.++++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~----~~l~~~ss~-~aG~---~~~~~~~~------~~~v~~~~~~~~~~~v 69 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDL----IEPVFFSTS-NAGG---KAPSFAKN------ETTLKDATSIDDLKKC 69 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGG----SEEEEEESS-CTTS---BCCTTCCS------CCBCEETTCHHHHHTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCc----eEEEEEech-hcCC---CHHHcCCC------ceEEEeCCChhHhcCC
Confidence 5799999999999999999 777776421 344444222 1110 00111110 11121 2234668899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||++.|
T Consensus 70 Dvvf~a~~ 77 (377)
T 3uw3_A 70 DVIITCQG 77 (377)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999866
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.16 Score=48.95 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... ....++.. ..| +.+
T Consensus 26 ~k~vlVTGas~gIG~aia~~L~~~G~-----~V~~~----~r~~~~~~~~~~~l~~~~-~~~~~~~~~~~Dv~d~~~v~~ 95 (297)
T 1xhl_A 26 GKSVIITGSSNGIGRSAAVIFAKEGA-----QVTIT----GRNEDRLEETKQQILKAG-VPAEKINAVVADVTEASGQDD 95 (297)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhcC-CCCceEEEEecCCCCHHHHHH
Confidence 35799999999999999999999874 25442 555566665555554321 00002222 111 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC----CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -------LFEDAEWALLIGAKPR-GP----GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~-kp----g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+ ..+. ...+..|.. +.+...+.+.+. . +.||+++-
T Consensus 96 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~-g~IV~isS 166 (297)
T 1xhl_A 96 IINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT--K-GEIVNVSS 166 (297)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--T-CEEEEECC
T ss_pred HHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 1237899999988643 22 1121 234455543 344444555442 3 77777774
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.34 Score=45.96 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++ +.++..+.++.... .++.. ..| +.+
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~-~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~ 96 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGA-----HVLAW----GRT-DGVKEVADEIADGG----GSAEAVVADLADLEGAAN 96 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESS-THHHHHHHHHHTTT----CEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----cCH-HHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHH
Confidence 35899999999999999999999885 24443 222 33444555554321 12222 111 111
Q ss_pred ------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 ------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..||...... .+. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 97 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~g~IV~isS~ 166 (273)
T 3uf0_A 97 VAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH--GSGRIVTIASM 166 (273)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence 1247899999988653211 121 234455533 445555555553 46778887754
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.054 Score=50.97 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=51.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--c---Cccccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--I---NPYELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~--~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~---~~~eal 170 (442)
||.|+||+|.||++++..|+.. +. .|... +++.+.+... .+.. . .+... + ...+++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~-----~V~~~----~r~~~~~~~~----~~~~--~--~~~~~D~~d~~~~~~~~ 63 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPAS-----QIVAI----VRNPAKAQAL----AAQG--I--TVRQADYGDEAALTSAL 63 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGG-----GEEEE----ESCTTTCHHH----HHTT--C--EEEECCTTCHHHHHHHT
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCc-----eEEEE----EcChHhhhhh----hcCC--C--eEEEcCCCCHHHHHHHH
Confidence 5899999999999999999986 53 24442 3333333221 1100 0 11110 1 123578
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++|+||.+++... ..|....+.+.+.+.+. +. ..++.+|
T Consensus 64 ~~~d~vi~~a~~~~----------~~~~~~~~~l~~a~~~~-~~-~~~v~~S 103 (286)
T 2zcu_A 64 QGVEKLLLISSSEV----------GQRAPQHRNVINAAKAA-GV-KFIAYTS 103 (286)
T ss_dssp TTCSEEEECC------------------CHHHHHHHHHHHH-TC-CEEEEEE
T ss_pred hCCCEEEEeCCCCc----------hHHHHHHHHHHHHHHHc-CC-CEEEEEC
Confidence 89999999887431 13555566677766664 22 3455554
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.56 Score=43.60 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc-------cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~-------~e 168 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++ ++. .+....|. .+
T Consensus 19 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~----~~~--------~~~~~~D~~~~~~~~~~ 77 (249)
T 1o5i_A 19 DKGVLVLAASRGIGRAVADVLSQEGA-----EVTIC----ARNEELLK----RSG--------HRYVVCDLRKDLDLLFE 77 (249)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHH----HTC--------SEEEECCTTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----cCCHHHHH----hhC--------CeEEEeeHHHHHHHHHH
Confidence 46899999999999999999999874 24442 44433222 121 11111221 12
Q ss_pred ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFEDAEWALLIGAKPRGPG---MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg---~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|+||..+|...... .+. ...+..|. .+.+.+.+.+.+. ..+.|++++--
T Consensus 78 ~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 141 (249)
T 1o5i_A 78 KVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSF 141 (249)
T ss_dssp HSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEEcch
Confidence 3347999999988653211 111 23344453 2345556666653 35778887753
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.075 Score=51.86 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=56.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c----cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~e 168 (442)
|||.|+||+|.||++++..|+.. +. .|.+... ......++.. .++.. ..++... .| + .+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~-----~V~~~~r--~~~~~~~~~~-~~~~~-----~~~~~~~~~Dl~d~~~~~~ 67 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQD-----TVVNIDK--LTYAGNLESL-SDISE-----SNRYNFEHADICDSAEITR 67 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-----EEEEEEC--CCTTCCGGGG-TTTTT-----CTTEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCC-----eEEEEec--CCCCCchhhh-hhhhc-----CCCeEEEECCCCCHHHHHH
Confidence 58999999999999999999986 42 2433221 1100111111 11111 0123221 12 1 23
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+++ ++|+||.+++..... ..+-.+.+..|+.-...+.+.+.+.
T Consensus 68 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~ 114 (361)
T 1kew_A 68 IFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114 (361)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 455 899999998854310 0122346677877777777776664
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.093 Score=51.61 Aligned_cols=74 Identities=14% Similarity=-0.047 Sum_probs=50.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
....+|+|||+ |.+|...+..|....-+ +.+.++ +++.++++..+.++.... ..+. ..+..+++ ++
T Consensus 123 ~~~~~v~iIGa-G~~a~~~~~al~~~~~~---~~V~v~----~r~~~~a~~la~~~~~~~----~~~~-~~~~~e~v-~a 188 (322)
T 1omo_A 123 KNSSVFGFIGC-GTQAYFQLEALRRVFDI---GEVKAY----DVREKAAKKFVSYCEDRG----ISAS-VQPAEEAS-RC 188 (322)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHHSCC---CEEEEE----CSSHHHHHHHHHHHHHTT----CCEE-ECCHHHHT-SS
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHhCCc---cEEEEE----CCCHHHHHHHHHHHHhcC----ceEE-ECCHHHHh-CC
Confidence 34679999995 99999999988873322 235553 667788887777665311 1244 45556788 99
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++-.
T Consensus 189 DvVi~aTp 196 (322)
T 1omo_A 189 DVLVTTTP 196 (322)
T ss_dssp SEEEECCC
T ss_pred CEEEEeeC
Confidence 99998643
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.25 Score=46.88 Aligned_cols=115 Identities=11% Similarity=0.052 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh-hHHHHHHHHhcccCCCcccEEE-ecC--cc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ-ALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~-~l~g~a~DL~~~~~~~~~~v~i-~~~--~~---- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+ .++..+.++.... .++.. ..| +.
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~ 95 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGC-----KVIVN----YANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIV 95 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCchHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHH
Confidence 45899999999999999999999874 24443 22222 2333333343211 11221 111 11
Q ss_pred -------cccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -------ELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|...... .+ -...+..|..-...+.+.+..+-...+.||+++.
T Consensus 96 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 96 RMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 22347899999988653211 12 2334666766555555555543223567777775
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.047 Score=52.29 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.++++....++. .++... .| +.
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~-----~V~~~----~r~~~~~~~~~~~~~-------~~~~~~~~Dl~d~~~v~~ 79 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGA-----TVIMA----VRDTRKGEAAARTMA-------GQVEVRELDLQDLSSVRR 79 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHTTSS-------SEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhc-------CCeeEEEcCCCCHHHHHH
Confidence 46899999999999999999999884 25552 555566554433331 122221 11 11
Q ss_pred --cccCCCcEEEEeCCcCCCC-CC---cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 --ELFEDAEWALLIGAKPRGP-GM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 --eal~dADiVIi~ag~~~kp-g~---~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..||....+ .. +-...+..|..-...+.+.+..+- ...|++++--
T Consensus 80 ~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~--~~riv~isS~ 140 (291)
T 3rd5_A 80 FADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL--TDRVVTVSSM 140 (291)
T ss_dssp HHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE--EEEEEEECCG
T ss_pred HHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HhheeEeech
Confidence 1223669999998864321 11 123456777666666666666542 3367777654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.33 Score=45.89 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--ccc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYE----- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~e----- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++.... .+..| +.+
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-------~~~~Dv~d~~~v~~~ 72 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGA-----RVVIC----DKDESGGRALEQELPGAV-------FILCDVTQEDDVKTL 72 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHCTTEE-------EEECCTTSHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhcCCe-------EEEcCCCCHHHHHHH
Confidence 35799999999999999999999884 25442 455555554444332110 11111 111
Q ss_pred ------ccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 ------LFEDAEWALLIGAKPR--GPG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 ------al~dADiVIi~ag~~~--kpg--~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+...|++|..+|... .+- .+. ...+..|..- .+...+.+.+. .+.||+++-
T Consensus 73 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS 141 (270)
T 1yde_A 73 VSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISS 141 (270)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC---CCEEEEEcC
Confidence 2337899999988643 221 121 2344555443 33334444332 367777775
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.44 Score=44.50 Aligned_cols=117 Identities=16% Similarity=0.037 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc---
Q 013466 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY--- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~--VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~--- 167 (442)
.++|.|+||+|. ||.+++..|+..|. .+.+. +++....+ ...++.... +. .++.. ..| +.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~-~~~~~~~~~-~~-~~~~~~~~D~~~~~~v 74 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGA-----RLIFT----YAGERLEK-SVHELAGTL-DR-NDSIILPCDVTNDAEI 74 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEEE----ESSGGGHH-HHHHHHHTS-SS-CCCEEEECCCSSSHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-----EEEEe----cCchHHHH-HHHHHHHhc-CC-CCceEEeCCCCCHHHH
Confidence 458999999976 99999999999885 25443 22322222 222222111 10 01221 111 11
Q ss_pred --------cccCCCcEEEEeCCcCC-----CCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 --------ELFEDAEWALLIGAKPR-----GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 --------eal~dADiVIi~ag~~~-----kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.||+++-.
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 75 ETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 12236799999988653 111 122 2345566555555555555543346778887753
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.023 Score=53.21 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC--Cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d--AD 174 (442)
|||.|+||+|.||++++..|+. + . .|.+. +++.....++..|+.+. ....+++++ .|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g-~----~V~~~----~r~~~~~~~~~~Dl~~~-----------~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R-H----EVIKV----YNSSEIQGGYKLDLTDF-----------PRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T-S----CEEEE----ESSSCCTTCEECCTTSH-----------HHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-C-C----eEEEe----cCCCcCCCCceeccCCH-----------HHHHHHHHhcCCC
Confidence 4799999999999999999985 4 2 24442 22221100000111100 001233444 99
Q ss_pred EEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||.++|..... ..+..+.+..|..-...+.+.+.+. ++.+++++-
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~iv~~SS 107 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI---DSYIVHIST 107 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEec
Confidence 999998854311 0134456777888888888887763 246666663
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.14 Score=48.45 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=45.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||+|||+ |++|..++..|...+. . +.+. +++.++++..+.++.. . ..+..+. +++|+||
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~--~---v~v~----~r~~~~~~~l~~~~~~---------~-~~~~~~~-~~~Divi 176 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGL--E---VWVW----NRTPQRALALAEEFGL---------R-AVPLEKA-REARLLV 176 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTC--C---EEEE----CSSHHHHHHHHHHHTC---------E-ECCGGGG-GGCSEEE
T ss_pred eEEEECC-cHHHHHHHHHHHHCCC--E---EEEE----ECCHHHHHHHHHHhcc---------c-hhhHhhc-cCCCEEE
Confidence 8999995 9999999999998774 2 5553 5565666655443321 1 2344556 8999999
Q ss_pred EeCCcC
Q 013466 178 LIGAKP 183 (442)
Q Consensus 178 i~ag~~ 183 (442)
++...+
T Consensus 177 ~~tp~~ 182 (263)
T 2d5c_A 177 NATRVG 182 (263)
T ss_dssp ECSSTT
T ss_pred EccCCC
Confidence 986543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.14 Score=47.96 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY------ 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~------ 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+. +....++.. . .+..| +.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~-~~~~~~~~~-~-------~~~~D~~~~~~~~~~ 67 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGA-----LVALC----DLRPEG-KEVAEAIGG-A-------FFQVDLEDERERVRF 67 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSTTH-HHHHHHHTC-E-------EEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCChhH-HHHHHHhhC-C-------EEEeeCCCHHHHHHH
Confidence 35799999999999999999999874 25553 333333 333333321 0 11111 11
Q ss_pred -----cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -----ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|.... + ..+. ...+..|.. +.+...+.+.+. ..+.|++++--
T Consensus 68 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 137 (256)
T 2d1y_A 68 VEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASV 137 (256)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCG
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 223478999999886432 1 1121 234555644 334444444442 35788887753
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.17 Score=49.67 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhh-HHHHHHHHhcccCCCcccEEEecCccccc--
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQA-LEGVAMELEDSLFPLLREVKIGINPYELF-- 170 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~l~~~~~~I~L~l~d~d~~~~~-l~g~a~DL~~~~~~~~~~v~i~~~~~eal-- 170 (442)
+++||+||| +|.+|..++..|.. ... +.+..+ .|++.++ ....+.++. +....++.+++
T Consensus 3 ~~irVaIIG-~G~iG~~~~~~l~~~~~~------~elvav-~d~~~~~~~~~~a~~~g---------~~~~~~~~e~ll~ 65 (312)
T 1nvm_B 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKY------LEMGAM-VGIDAASDGLARAQRMG---------VTTTYAGVEGLIK 65 (312)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSS------EEEEEE-ECSCTTCHHHHHHHHTT---------CCEESSHHHHHHH
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHhhCcC------eEEEEE-EeCChhhhHHHHHHHcC---------CCcccCCHHHHHh
Confidence 468999999 59999999998865 332 222211 2444444 333333221 11122344444
Q ss_pred ----CCCcEEEEeCC
Q 013466 171 ----EDAEWALLIGA 181 (442)
Q Consensus 171 ----~dADiVIi~ag 181 (442)
.+.|+|+++.+
T Consensus 66 ~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 66 LPEFADIDFVFDATS 80 (312)
T ss_dssp SGGGGGEEEEEECSC
T ss_pred ccCCCCCcEEEECCC
Confidence 56899999866
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.13 Score=47.76 Aligned_cols=118 Identities=13% Similarity=0.077 Sum_probs=65.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYEL--- 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~ea--- 169 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.. .++.+.++....++.... . ++.. ..| +.+.
T Consensus 7 ~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~~~---~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~ 74 (255)
T 3icc_A 7 GKVALVTGASRGIGRAIAKRLANDGA-----LVAIHY---GNRKEEAEETVYEIQSNG-G---SAFSIGANLESLHGVEA 74 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEEE---SSCSHHHHHHHHHHHHTT-C---EEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----eEEEEe---CCchHHHHHHHHHHHhcC-C---ceEEEecCcCCHHHHHH
Confidence 45789999999999999999999884 243321 334455555555554321 1 2221 111 1111
Q ss_pred -c-------------CCCcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 -F-------------EDAEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 -l-------------~dADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+ ...|++|..+|...... .+. ...+..|..-...+.+.+..+-...+.|++++-..
T Consensus 75 ~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~ 150 (255)
T 3icc_A 75 LYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 150 (255)
T ss_dssp HHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred HHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence 1 12899999988643211 111 23455665444445544443322356788887643
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.017 Score=53.49 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=59.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH----HHHHHhcccCCCcccEE-EecCccccc-
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG----VAMELEDSLFPLLREVK-IGINPYELF- 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g----~a~DL~~~~~~~~~~v~-i~~~~~eal- 170 (442)
++|.|+||+|+||.+++..|+..|. .+.+. +++.+.+.+ +..|+.+.. .+. ......+.+
T Consensus 4 k~vlITGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~D~~~~~-----~~~~~~~~~~~~~~ 69 (236)
T 1ooe_A 4 GKVIVYGGKGALGSAILEFFKKNGY-----TVLNI----DLSANDQADSNILVDGNKNWTE-----QEQSILEQTASSLQ 69 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE-----EEEEE----ESSCCTTSSEEEECCTTSCHHH-----HHHHHHHHHHHHHT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEE----ecCccccccccEEEeCCCCCHH-----HHHHHHHHHHHHhC
Confidence 5799999999999999999999874 24442 333222210 000110000 000 000001112
Q ss_pred -CCCcEEEEeCCcCC-CCC---Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 171 -EDAEWALLIGAKPR-GPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 171 -~dADiVIi~ag~~~-kpg---~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
...|+||..+|... .+- .+ -...+..|..-...+.+.+..+....+.|++++-.
T Consensus 70 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 131 (236)
T 1ooe_A 70 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA 131 (236)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred CCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence 47899999988543 111 11 13345667665555555554432124678887754
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.44 Score=46.22 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc--------cchhhhHHHHHHHHhcccCCCcccEEE-ecC-
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--------ERSLQALEGVAMELEDSLFPLLREVKI-GIN- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~--------d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~- 165 (442)
.++|.|+||+|+||.+++..|+..|. .+.+.+.+. ..+.+.++..+.++.... .++.. ..|
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~-----~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv 116 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGA-----DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG----RRIIARQADV 116 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----eEEEEecccccccccccccCHHHHHHHHHHHHhcC----CeEEEEECCC
Confidence 35788999999999999999999885 244432210 011344554444443221 12222 111
Q ss_pred -cc-----------cccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 -PY-----------ELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 -~~-----------eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+. +.+...|++|..||.... + ..+. ...+..|.. +.+.+.+.+.+. +..+.||+++-
T Consensus 117 ~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~~g~Iv~isS 195 (317)
T 3oec_A 117 RDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER-GQGGSVIFVSS 195 (317)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-CSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCCEEEEECc
Confidence 11 223478999999886532 1 1222 234455533 445555666553 34688888875
Q ss_pred ch
Q 013466 224 PC 225 (442)
Q Consensus 224 Pv 225 (442)
..
T Consensus 196 ~~ 197 (317)
T 3oec_A 196 TV 197 (317)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.35 Score=45.75 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e---- 168 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.... ....++.. ..| +.+
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~ 75 (280)
T 1xkq_A 6 NKTVIITGSSNGIGRTTAILFAQEGA-----NVTIT----GRSSERLEETRQIILKSG-VSEKQVNSVVADVTTEDGQDQ 75 (280)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHTTT-CCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHcC-CCCcceEEEEecCCCHHHHHH
Confidence 35799999999999999999999874 25442 555566665555554321 00002222 112 111
Q ss_pred -------ccCCCcEEEEeCCcCC-CC------CCc---HHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAKPR-GP------GME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~~~-kp------g~~---r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|... .+ ..+ -...+..|.. +.+...+.+.+. . +.|++++.-
T Consensus 76 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~-g~iv~isS~ 149 (280)
T 1xkq_A 76 IINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--K-GEIVNVSSI 149 (280)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--T-CEEEEECCG
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcC--C-CcEEEecCc
Confidence 1236899999988643 22 111 1233455543 334444444442 2 677777653
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.045 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++|.|+||+|+||.+++..|+..|.
T Consensus 3 k~vlVtGasggiG~~la~~l~~~G~ 27 (242)
T 1uay_A 3 RSALVTGGASGLGRAAALALKARGY 27 (242)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999999874
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.35 Score=45.44 Aligned_cols=115 Identities=12% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .+.+... ++.+.++....++.... .++.+ ..| +.
T Consensus 25 ~k~vlITGas~gIG~~~a~~l~~~G~-----~v~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~ 92 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRLHDAGM-----AVAVSHS---ERNDHVSTWLMHERDAG----RDFKAYAVDVADFESCER 92 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-----EEEEEEC---SCHHHHHHHHHHHHTTT----CCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEEEcC---CchHHHHHHHHHHHhcC----CceEEEEecCCCHHHHHH
Confidence 35688999999999999999999875 2444221 23344444444343221 12222 111 11
Q ss_pred ------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.|++++..
T Consensus 93 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~g~iv~isS~ 163 (269)
T 3gk3_A 93 CAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER--RFGRIVNIGSV 163 (269)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCCEEEEeCCh
Confidence 12337899999988653211 122 223445533 344444555543 46788888763
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.49 Score=40.55 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=51.2
Q ss_pred cCCCEEEEEcCC---CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc
Q 013466 94 KKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (442)
Q Consensus 94 ~~~~KI~IIGA~---G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (442)
.++.+|+||||+ |.+|..++..|...|. .++.+ +...+.. . .+..+.+..+..
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-------~V~~v--np~~~~i-------~--------G~~~~~s~~el~ 67 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGF-------EVLPV--NPNYDEI-------E--------GLKCYRSVRELP 67 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTC-------EEEEE--CTTCSEE-------T--------TEECBSSGGGSC
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCC-------EEEEe--CCCCCeE-------C--------CeeecCCHHHhC
Confidence 457899999954 9999999999998774 24333 3221111 0 133333444555
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.++|+++++.. .+.+.+++..+.+. +..++++..+
T Consensus 68 ~~vDlvii~vp----------------~~~v~~v~~~~~~~-g~~~i~~~~~ 102 (138)
T 1y81_A 68 KDVDVIVFVVP----------------PKVGLQVAKEAVEA-GFKKLWFQPG 102 (138)
T ss_dssp TTCCEEEECSC----------------HHHHHHHHHHHHHT-TCCEEEECTT
T ss_pred CCCCEEEEEeC----------------HHHHHHHHHHHHHc-CCCEEEEcCc
Confidence 67999998733 24455555545553 4666554443
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.021 Score=51.22 Aligned_cols=108 Identities=9% Similarity=0.009 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
+|||.|+||+|+||.+++..|+ .|. .+.+. +++.+. +..|+.+.. . + ....+.+...|+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~-----~V~~~----~r~~~~---~~~D~~~~~-~----~---~~~~~~~~~~d~ 61 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKA-----EVITA----GRHSGD---VTVDITNID-S----I---KKMYEQVGKVDA 61 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTS-----EEEEE----ESSSSS---EECCTTCHH-H----H---HHHHHHHCCEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCC-----eEEEE----ecCccc---eeeecCCHH-H----H---HHHHHHhCCCCE
Confidence 4689999999999999999998 763 24442 222210 111221110 0 0 000111235799
Q ss_pred EEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
||..+|...... .+. .+.+..|..-...+.+.+.+.....+.+++++..
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~ 116 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGI 116 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCG
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcch
Confidence 999988543221 121 2344566655555655554432113677777653
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.079 Score=55.25 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=41.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc------CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG------EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~------~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (442)
+||+||| .|.+|.+++..|... |+ .+.+.+ +.+ .+....+.+.. ..... . . ..+..+++
T Consensus 55 KkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~-----~ViVg~---r~~-sks~e~A~e~G--~~v~d-~-t-a~s~aEAa 119 (525)
T 3fr7_A 55 KQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKIGL---RKG-SKSFDEARAAG--FTEES-G-T-LGDIWETV 119 (525)
T ss_dssp SEEEEEC-CTTHHHHHHHHHHHHHHHTTCCC-----EEEEEE---CTT-CSCHHHHHHTT--CCTTT-T-C-EEEHHHHH
T ss_pred CEEEEEe-EhHHHHHHHHHHHhcccccCCCC-----EEEEEe---CCc-hhhHHHHHHCC--CEEec-C-C-CCCHHHHH
Confidence 7999999 599999999999987 64 243322 111 22222332221 10000 0 0 12357899
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
++||+||++..
T Consensus 120 ~~ADVVILaVP 130 (525)
T 3fr7_A 120 SGSDLVLLLIS 130 (525)
T ss_dssp HHCSEEEECSC
T ss_pred hcCCEEEECCC
Confidence 99999999743
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.1 Score=51.57 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-- 171 (442)
+++||+|||+ |.+|...+..|... +-+ +.+.+ .|++.++++..+..+. +..+++..+.++
T Consensus 12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~---~lvav----~d~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~ 74 (354)
T 3q2i_A 12 RKIRFALVGC-GRIANNHFGALEKHADRA---ELIDV----CDIDPAALKAAVERTG---------ARGHASLTDMLAQT 74 (354)
T ss_dssp SCEEEEEECC-STTHHHHHHHHHHTTTTE---EEEEE----ECSSHHHHHHHHHHHC---------CEEESCHHHHHHHC
T ss_pred CcceEEEEcC-cHHHHHHHHHHHhCCCCe---EEEEE----EcCCHHHHHHHHHHcC---------CceeCCHHHHhcCC
Confidence 5689999995 99999999988876 221 11223 3556666665544321 344555555665
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+|+++.
T Consensus 75 ~~D~V~i~t 83 (354)
T 3q2i_A 75 DADIVILTT 83 (354)
T ss_dssp CCSEEEECS
T ss_pred CCCEEEECC
Confidence 899999873
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.12 Score=48.01 Aligned_cols=109 Identities=10% Similarity=0.052 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.++++... ++. ++.. ..| +.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~-~~~--------~~~~~~~D~~~~~~~~~ 67 (246)
T 2ag5_A 6 GKVIILTAAAQGIGQAAALAFAREGA-----KVIAT----DINESKLQELE-KYP--------GIQTRVLDVTKKKQIDQ 67 (246)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHGGGG-GST--------TEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHH-hcc--------CceEEEeeCCCHHHHHH
Confidence 35799999999999999999999874 25442 44444443222 221 1111 111 11
Q ss_pred --cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 --ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 --eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.|++++..
T Consensus 68 ~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS~ 134 (246)
T 2ag5_A 68 FANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSV 134 (246)
T ss_dssp HHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred HHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCceEEEEech
Confidence 22567899999988643211 121 223445543 344445555543 45778877753
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.06 Score=51.73 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEec--CcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI--NPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~--~~~eal~d 172 (442)
..+|.|+||+|++|.+++..|+..|. .|.+ .+++.++++..+.++.... ... ....++. +..+.+++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~-----~V~i----~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEE----EECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHh
Confidence 46899999889999999999999874 2544 2556667776666664311 110 0111111 11356788
Q ss_pred CcEEEEeCCcC
Q 013466 173 AEWALLIGAKP 183 (442)
Q Consensus 173 ADiVIi~ag~~ 183 (442)
+|+||.++|..
T Consensus 189 ~DvlVn~ag~g 199 (287)
T 1lu9_A 189 AHFVFTAGAIG 199 (287)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEECCCcc
Confidence 99999998743
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.015 Score=57.45 Aligned_cols=118 Identities=12% Similarity=0.005 Sum_probs=61.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhhHHHHHHHHhcccCCCcccEEEe-cC--cc----c
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIG-IN--PY----E 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~-~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~----e 168 (442)
++|.|+||+|.||++++..|+..|. .|.+.....+.. .+.++....++.... ..++.+. .| +. +
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~Dl~d~~~~~~ 96 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGY-----EVHGIVRRSSSFNTGRIEHLYKNPQAHI---EGNMKLHYGDLTDSTCLVK 96 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCCSSCCCTTTGGGC------------CEEEEECCTTCHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-----EEEEEECCccccchhhHHHHhhhhcccc---CCCceEEEccCCCHHHHHH
Confidence 6899999999999999999998773 244322211100 011111100000000 0122221 11 12 2
Q ss_pred ccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCC--CeEEEEeCC
Q 013466 169 LFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASR--NVKVIVVGN 223 (442)
Q Consensus 169 al~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p--~a~vivvtN 223 (442)
++++ .|+||.++|..... ..+..+.+..|..-...+.+.+.+. +. ...||+++-
T Consensus 97 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS 156 (375)
T 1t2a_A 97 IINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQAST 156 (375)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEE
T ss_pred HHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecc
Confidence 3443 59999998854211 0123445677877778888877764 22 156666654
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.021 Score=55.90 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=59.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c----ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P----YEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~----~ea 169 (442)
+||.|+||+|.||++++..|+..+-....-.|... +++..... +.+ .++.+ ..| + .++
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~----~r~~~~~~-----~~~------~~~~~~~~Dl~d~~~~~~~ 66 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGV----ARRTRPAW-----HED------NPINYVQCDISDPDDSQAK 66 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEE----ESSCCCSC-----CCS------SCCEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEE----eCCCCccc-----ccc------CceEEEEeecCCHHHHHHH
Confidence 58999999999999999999876610000023332 22222111 110 01111 111 1 245
Q ss_pred cCC---CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 170 FED---AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 170 l~d---ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+++ +|+||.+++... .+..+....|..-...+.+.+.+.
T Consensus 67 ~~~~~~~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~ 108 (364)
T 2v6g_A 67 LSPLTDVTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPN 108 (364)
T ss_dssp HTTCTTCCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHh
Confidence 666 999999988542 345667788988888998888775
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.11 Score=49.88 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|+|| |++|.+++..|...| . .|.+ .+++.++++.++ ++. . ... .++++.++|+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~----~v~V----~nRt~~ka~~la-~~~-~--------~~~--~~~~l~~~Di 175 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-L----QVSV----LNRSSRGLDFFQ-RLG-C--------DCF--MEPPKSAFDL 175 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-C----EEEE----ECSSCTTHHHHH-HHT-C--------EEE--SSCCSSCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-C----EEEE----EeCCHHHHHHHH-HCC-C--------eEe--cHHHhccCCE
Confidence 469999996 999999999999987 3 2655 367778888777 553 1 111 2445569999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
||.+-.
T Consensus 176 VInaTp 181 (269)
T 3phh_A 176 IINATS 181 (269)
T ss_dssp EEECCT
T ss_pred EEEccc
Confidence 998643
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.18 Score=48.82 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~--~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~--- 166 (442)
++++|.|+||+|.||++++..|+..|.... .-.|.+. +++...... . . ..++.. ..| +
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~----~r~~~~~~~----~---~---~~~~~~~~~Dl~d~~~ 78 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLI----DVFQPEAPA----G---F---SGAVDARAADLSAPGE 78 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEE----ESSCCCCCT----T---C---CSEEEEEECCTTSTTH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEE----EccCCcccc----c---c---CCceeEEEcCCCCHHH
Confidence 356999999999999999999998772000 0013332 222211110 0 0 012221 111 1
Q ss_pred -cccc-CCCcEEEEeCCcCCCC-CCcHHhHHHHHHHHHHHHHHHHHhhhC---CCeEEEEeC
Q 013466 167 -YELF-EDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVAS---RNVKVIVVG 222 (442)
Q Consensus 167 -~eal-~dADiVIi~ag~~~kp-g~~r~dll~~N~~Ii~~i~~~I~~~a~---p~a~vivvt 222 (442)
.+++ .+.|+||.+|+..... ..+-.+.+..|+.-...+.+.+.+... +...|++++
T Consensus 79 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 79 AEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS 140 (342)
T ss_dssp HHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred HHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence 2235 4899999998854210 012334566777777777777666420 134566555
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.025 Score=54.56 Aligned_cols=76 Identities=18% Similarity=0.140 Sum_probs=43.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFED 172 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~d 172 (442)
.+++||+|+||+|.+|..++..+...+-+ +.+.+. |++.+... ..|+.... .. ...+.++.+..+.+++
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~---elva~~----d~~~~~~~--g~d~~~~~-g~~~~~v~~~~dl~~~l~~ 72 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGV---QLGAAL----EREGSSLL--GSDAGELA-GAGKTGVTVQSSLDAVKDD 72 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTE---ECCCEE----CCTTCTTC--SCCTTCSS-SSSCCSCCEESCSTTTTTS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCC---EEEEEE----ecCchhhh--hhhHHHHc-CCCcCCceecCCHHHHhcC
Confidence 35689999998899999999988764421 112232 33222211 11221111 11 0134455666677889
Q ss_pred CcEEE-Ee
Q 013466 173 AEWAL-LI 179 (442)
Q Consensus 173 ADiVI-i~ 179 (442)
+|+|| ++
T Consensus 73 ~DvVIDft 80 (273)
T 1dih_A 73 FDVFIDFT 80 (273)
T ss_dssp CSEEEECS
T ss_pred CCEEEEcC
Confidence 99999 55
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.026 Score=53.78 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=43.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||.|||| |++|.+++..|+..|. +.|.+. +++.++++.++.++ ......+..+.++++|+||
T Consensus 110 ~vliiGa-Gg~a~ai~~~L~~~G~----~~I~v~----nR~~~ka~~la~~~---------~~~~~~~~~~~~~~aDiVI 171 (253)
T 3u62_A 110 PVVVVGA-GGAARAVIYALLQMGV----KDIWVV----NRTIERAKALDFPV---------KIFSLDQLDEVVKKAKSLF 171 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTC----CCEEEE----ESCHHHHHTCCSSC---------EEEEGGGHHHHHHTCSEEE
T ss_pred eEEEECc-HHHHHHHHHHHHHcCC----CEEEEE----eCCHHHHHHHHHHc---------ccCCHHHHHhhhcCCCEEE
Confidence 8999995 9999999999999885 236663 66655554332111 1111223456788999999
Q ss_pred EeCC
Q 013466 178 LIGA 181 (442)
Q Consensus 178 i~ag 181 (442)
.+..
T Consensus 172 natp 175 (253)
T 3u62_A 172 NTTS 175 (253)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 8643
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.25 Score=47.01 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=64.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc-----
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----- 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----- 168 (442)
+++.|+||+|+||.+++..|+..|. .+.+... ++.+.++..+.++.... .++.. ..| +.+
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~-----~V~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~ 97 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGF-----DIAITGI---GDAEGVAPVIAELSGLG----ARVIFLRADLADLSSHQAT 97 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEES---CCHHHHHHHHHHHHHTT----CCEEEEECCTTSGGGHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----eEEEEeC---CCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHH
Confidence 4688999999999999999999885 2444321 24455665655554321 12222 111 111
Q ss_pred ------ccCCCcEEEEeCCcC---CCCC--CcH---HhHHHHHH----HHHHHHHHHHHhhh-CCCeEEEEeCCch
Q 013466 169 ------LFEDAEWALLIGAKP---RGPG--MER---AGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGNPC 225 (442)
Q Consensus 169 ------al~dADiVIi~ag~~---~kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a-~p~a~vivvtNPv 225 (442)
.+...|++|..||.. .++- .+. ...+..|. .+.+...+.+.+.. ...+.||+++--.
T Consensus 98 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~ 173 (280)
T 4da9_A 98 VDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVS 173 (280)
T ss_dssp HHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_pred HHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchh
Confidence 123789999999862 2221 121 12233443 34555566665531 1157788877543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.068 Score=51.69 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~-la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
+++||+|||+ |.+|.. ++..|...+-+ +.+.+ .|++.++++..+..+. . + .+++..+.++++
T Consensus 5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~---~l~av----~d~~~~~~~~~a~~~~-~--~------~~~~~~~ll~~~ 67 (308)
T 3uuw_A 5 KNIKMGMIGL-GSIAQKAYLPILTKSERF---EFVGA----FTPNKVKREKICSDYR-I--M------PFDSIESLAKKC 67 (308)
T ss_dssp CCCEEEEECC-SHHHHHHTHHHHTSCSSS---EEEEE----ECSCHHHHHHHHHHHT-C--C------BCSCHHHHHTTC
T ss_pred ccCcEEEEec-CHHHHHHHHHHHHhCCCe---EEEEE----ECCCHHHHHHHHHHcC-C--C------CcCCHHHHHhcC
Confidence 4689999995 999995 78877654322 11223 3556677766554432 1 1 134555667799
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+++.
T Consensus 68 D~V~i~t 74 (308)
T 3uuw_A 68 DCIFLHS 74 (308)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999973
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.069 Score=50.69 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=60.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH----HHHHhcccCCCcccEE-EecCccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV----AMELEDSLFPLLREVK-IGINPYE 168 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~----a~DL~~~~~~~~~~v~-i~~~~~e 168 (442)
.+.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.+.+. ..|+.+.. .+. ......+
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~Dv~~~~-----~v~~~~~~~~~ 77 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGA-----KVVSV----SLDEKSDVNVSDHFKIDVTNEE-----EVKEAVEKTTK 77 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCC--CTTSSEEEECCTTCHH-----HHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCchhccCceeEEEecCCCHH-----HHHHHHHHHHH
Confidence 3356899999999999999999999874 24443 2222222110 00111000 000 0000122
Q ss_pred ccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..||.... +- .+. ...+..|.. +.+...+.+.+. ..+.||+++-.
T Consensus 78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 141 (269)
T 3vtz_A 78 KYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI--GHGSIINIASV 141 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCCEEEEECch
Confidence 33478999999886432 21 121 223445533 445555555553 46778877754
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.093 Score=49.41 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..|||+|||+ |.+|.+++..|...|.
T Consensus 5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~ 30 (232)
T 3dfu_A 5 PRLRVGIFDD-GSSTVNMAEKLDSVGH 30 (232)
T ss_dssp CCCEEEEECC-SCCCSCHHHHHHHTTC
T ss_pred CCcEEEEEee-CHHHHHHHHHHHHCCC
Confidence 3579999995 9999999999999874
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.11 Score=49.93 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+||.|+||+|.+|++++..|+..|.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~ 36 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGH 36 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCC
Confidence 4899999999999999999999873
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.39 Score=44.77 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~e---- 168 (442)
+++|.|+||+|+||.+++..|+..|. .+.+.. ..+.+.++.....+... ..++.+. .| +.+
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~v~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~ 74 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGY-----SVTVTY---HSDTTAMETMKETYKDV----EERLQFVQADVTKKEDLHK 74 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHTGGG----GGGEEEEECCTTSHHHHHH
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCC-----EEEEEc---CCChHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHH
Confidence 46799999999999999999999875 244422 11223333332222211 1123322 11 111
Q ss_pred -------ccCCCcEEEEeCCc--CC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 -------LFEDAEWALLIGAK--PR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 -------al~dADiVIi~ag~--~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|. .. ++- .+. ...+..|.. +.+...+.+.+. ..+.|++++-.
T Consensus 75 ~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~iss~ 147 (264)
T 3i4f_A 75 IVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ--NFGRIINYGFQ 147 (264)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc--CCCeEEEEeec
Confidence 22378999999883 21 221 122 234455543 444444555653 45777777643
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.39 Score=44.75 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH--HHHHHhcccCCCcccEE-EecCcccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG--VAMELEDSLFPLLREVK-IGINPYELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g--~a~DL~~~~~~~~~~v~-i~~~~~eal~dA 173 (442)
++|.|+||+|+||.+++..|+..|. .|.+. +++.+.+.. +..|+.+.. .+. ......+.+...
T Consensus 23 k~vlITGas~gIG~~la~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~d~~d~~-----~v~~~~~~~~~~~g~i 88 (251)
T 3orf_A 23 KNILVLGGSGALGAEVVKFFKSKSW-----NTISI----DFRENPNADHSFTIKDSGEE-----EIKSVIEKINSKSIKV 88 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCCTTSSEEEECSCSSHH-----HHHHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCCcccccccceEEEeCCHH-----HHHHHHHHHHHHcCCC
Confidence 4799999999999999999999884 24443 232222110 000000000 000 000012233457
Q ss_pred cEEEEeCCcCCCC----CCc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 174 EWALLIGAKPRGP----GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 174 DiVIi~ag~~~kp----g~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|+||..+|..... ..+ -...+..|..-...+.+.+..+-..++.||+++-..
T Consensus 89 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 147 (251)
T 3orf_A 89 DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA 147 (251)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence 9999998854321 111 123455666655555555544322356788887543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.17 Score=47.55 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=62.0
Q ss_pred CEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc-----
Q 013466 97 VNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY----- 167 (442)
Q Consensus 97 ~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~----- 167 (442)
++|.|+||+ |+||.+++..|+..|. .|.+. +++. .++....++.... +. ...+..| +.
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~~----~r~~-~~~~~~~~l~~~~-~~--~~~~~~D~~~~~~v~~ 76 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGA-----ELAFT----YQND-KLKGRVEEFAAQL-GS--DIVLQCDVAEDASIDT 76 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTC-----EEEEE----ESST-TTHHHHHHHHHHT-TC--CCEEECCTTCHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC-----EEEEE----cCcH-HHHHHHHHHHHhc-CC--cEEEEccCCCHHHHHH
Confidence 579999998 9999999999999874 25553 3332 2222223332211 10 0111111 11
Q ss_pred ------cccCCCcEEEEeCCcCCC-----C--C-Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ------ELFEDAEWALLIGAKPRG-----P--G-ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ------eal~dADiVIi~ag~~~k-----p--g-~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + . .+ -...+..|..-...+.+.+..+-...+.||+++.
T Consensus 77 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 149 (265)
T 1qsg_A 77 MFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY 149 (265)
T ss_dssp HHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence 122367999999886531 1 0 22 1335566766556666655543212467777775
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.16 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
+++|.|+||+|+||.+++..|+..|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g 27 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDK 27 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCT
T ss_pred CCEEEEecCCchHHHHHHHHHHhcC
Confidence 4589999999999999999999877
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.1 Score=51.08 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=44.3
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-- 171 (442)
++++||+|||+ |.+|..++..|...+- +.+.-+ .|++.++++..+..+. . + ..+.+..+.+.
T Consensus 3 m~~~~igiiG~-G~~g~~~~~~l~~~~~------~~l~av-~d~~~~~~~~~~~~~~-~--~-----~~~~~~~~ll~~~ 66 (330)
T 3e9m_A 3 LDKIRYGIMST-AQIVPRFVAGLRESAQ------AEVRGI-ASRRLENAQKMAKELA-I--P-----VAYGSYEELCKDE 66 (330)
T ss_dssp CCCEEEEECSC-CTTHHHHHHHHHHSSS------EEEEEE-BCSSSHHHHHHHHHTT-C--C-----CCBSSHHHHHHCT
T ss_pred CCeEEEEEECc-hHHHHHHHHHHHhCCC------cEEEEE-EeCCHHHHHHHHHHcC-C--C-----ceeCCHHHHhcCC
Confidence 35689999995 9999999999887542 222211 3556666665544331 1 1 12344445555
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+|+++.
T Consensus 67 ~~D~V~i~t 75 (330)
T 3e9m_A 67 TIDIIYIPT 75 (330)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEcC
Confidence 799999873
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.54 Score=44.21 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c-------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~------- 166 (442)
.++|.|+||+|+||.+++..|+..|. .|.+. +++.+.+.....+.. . ..+..| +
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~-~-------~~~~~Dv~~~~~v~~~ 89 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGH-----RVIIS----YRTEHASVTELRQAG-A-------VALYGDFSCETGIMAF 89 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTC-----CEEEE----ESSCCHHHHHHHHHT-C-------EEEECCTTSHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHhcC-C-------eEEECCCCCHHHHHHH
Confidence 35789999999999999999999884 25553 333333322222211 0 011111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPRGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+. ..+.|++++-.
T Consensus 90 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~--~~g~iv~isS~ 158 (260)
T 3gem_A 90 IDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS--EVADIVHISDD 158 (260)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS--SSCEEEEECCG
T ss_pred HHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcEEEEECCh
Confidence 122347899999988643222 221 124455533 344444555542 45778887754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.57 Score=44.58 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEE-ecC--c--
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKI-GIN--P-- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i-~~~--~-- 166 (442)
+.+++.|+||+|+||.+++..|+..|. .+.+...+.+..+ +.++..+.++.... .++.. ..| +
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~ 78 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGA-----NVALVAKSAEPHPKLPGTIYTAAKEIEEAG----GQALPIVGDIRDGD 78 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTC-----EEEEEESCCSCCSSSCCCHHHHHHHHHHHT----SEEEEEECCTTSHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEECChhhhhhhhHHHHHHHHHHHhcC----CcEEEEECCCCCHH
Confidence 346899999999999999999999875 2555333221100 13444454454321 12222 111 1
Q ss_pred ---------ccccCCCcEEEEeCCcCC-CC--CCcH---HhHHHHHHHHHHHHHHHHHhhh--CCCeEEEEeCC
Q 013466 167 ---------YELFEDAEWALLIGAKPR-GP--GMER---AGLLDINGQIFAEQGKALNAVA--SRNVKVIVVGN 223 (442)
Q Consensus 167 ---------~eal~dADiVIi~ag~~~-kp--g~~r---~dll~~N~~Ii~~i~~~I~~~a--~p~a~vivvtN 223 (442)
.+.+...|++|..||... ++ ..+. ...+..|..-...+.+.+..+- ...+.|++++-
T Consensus 79 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS 152 (285)
T 3sc4_A 79 AVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSP 152 (285)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 122347899999988643 22 1222 2344566554444444433321 13568888875
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.23 Score=48.33 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|||| |++|+.++..|+..|+ + .|.|.|.
T Consensus 36 ~~~VlVvGa-GGlGs~va~~La~aGV-G---~i~lvD~ 68 (292)
T 3h8v_A 36 TFAVAIVGV-GGVGSVTAEMLTRCGI-G---KLLLFDY 68 (292)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHHTC-S---EEEEECC
T ss_pred CCeEEEECc-CHHHHHHHHHHHHcCC-C---EEEEECC
Confidence 459999995 9999999999999996 2 3556443
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.16 Score=46.96 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE------EecCcccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK------IGINPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~------i~~~~~ea 169 (442)
.++|.|+||+|+||.+++..|+. +. .+.+. +++.+.++..+. +..... ...++. ......+.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~-g~-----~v~~~----~r~~~~~~~~~~-~~~~~~-~~~D~~~~~~~~~~~~~~~~ 72 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR-DH-----IVYAL----GRNPEHLAALAE-IEGVEP-IESDIVKEVLEEGGVDKLKN 72 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT-TS-----EEEEE----ESCHHHHHHHHT-STTEEE-EECCHHHHHHTSSSCGGGTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC-CC-----eEEEE----eCCHHHHHHHHh-hcCCcc-eecccchHHHHHHHHHHHHh
Confidence 35789999999999999999987 42 24442 445555443321 111100 000000 00011233
Q ss_pred cCCCcEEEEeCCcCCCCCC---cH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 FEDAEWALLIGAKPRGPGM---ER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~---~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+...|++|..+|....... +. ...+..|.. +.+.+.+.+.+. ++.||+++--
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~---~g~iv~isS~ 134 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA---SGCVIYINSG 134 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEC--
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCeEEEEcCc
Confidence 4578999999886432211 11 223445543 355555555552 2667766643
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.18 Score=47.79 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .|.|.+.|. |....+++..+..|.... +. .++
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg----~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~-~~v 100 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVG----TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-PD-IQL 100 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCS----EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC-TT-SEE
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCC----eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC-CC-CEE
Confidence 359999996 99999999999999962 366654331 111245666666665433 21 123
Q ss_pred EEecC------cccccCCCcEEEEeC
Q 013466 161 KIGIN------PYELFEDAEWALLIG 180 (442)
Q Consensus 161 ~i~~~------~~eal~dADiVIi~a 180 (442)
..... ..+.++++|+||.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~DvVi~~~ 126 (251)
T 1zud_1 101 TALQQRLTGEALKDAVARADVVLDCT 126 (251)
T ss_dssp EEECSCCCHHHHHHHHHHCSEEEECC
T ss_pred EEEeccCCHHHHHHHHhcCCEEEECC
Confidence 33221 124577899999763
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.048 Score=52.22 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hhHHHHHHHHhcccCCCcccEE-EecC--c----cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVK-IGIN--P----YE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~-~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----~e 168 (442)
|||.|+||+|.||++++..|+..|. .|.+. ++.. ...+ .+.. .+. +..| + .+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-----~V~~~----~r~~~~~~~----~~~~-------~~~~~~~Dl~~~~~~~~ 60 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGL-----EVAVL----DNLATGKRE----NVPK-------GVPFFRVDLRDKEGVER 60 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEEE----CCCSSCCGG----GSCT-------TCCEECCCTTCHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEEE----ECCCcCchh----hccc-------CeEEEECCCCCHHHHHH
Confidence 5899999999999999999998773 24332 2211 1111 0100 011 1111 1 23
Q ss_pred ccC--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+++ +.|+||..++..... ..+....+..|..-...+.+.+.+. + -..+++++-
T Consensus 61 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~-~~~iv~~SS 117 (311)
T 2p5y_A 61 AFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-G-VEKLVFAST 117 (311)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-T-CSEEEEEEE
T ss_pred HHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-C-CCEEEEeCC
Confidence 455 799999988753210 0123446677877777888877764 2 235665553
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.19 Score=49.30 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=43.6
Q ss_pred ccCCCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-
Q 013466 93 WKKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF- 170 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~-~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal- 170 (442)
..+|+||+|||+ |.+|. +++..+...+-+ +.+.+ .|++.++++..+..+. . + ..+++..+.+
T Consensus 20 ~~~mirigiIG~-G~ig~~~~~~~~~~~~~~---~lvav----~d~~~~~a~~~a~~~g-~--~-----~~y~d~~ell~ 83 (350)
T 4had_A 20 FQSMLRFGIIST-AKIGRDNVVPAIQDAENC---VVTAI----ASRDLTRAREMADRFS-V--P-----HAFGSYEEMLA 83 (350)
T ss_dssp --CCEEEEEESC-CHHHHHTHHHHHHHCSSE---EEEEE----ECSSHHHHHHHHHHHT-C--S-----EEESSHHHHHH
T ss_pred ccCccEEEEEcC-hHHHHHHHHHHHHhCCCe---EEEEE----ECCCHHHHHHHHHHcC-C--C-----eeeCCHHHHhc
Confidence 456899999995 99996 467777765432 11233 3666777776665442 1 1 2344444445
Q ss_pred -CCCcEEEEe
Q 013466 171 -EDAEWALLI 179 (442)
Q Consensus 171 -~dADiVIi~ 179 (442)
.+.|+|+++
T Consensus 84 ~~~iDaV~I~ 93 (350)
T 4had_A 84 SDVIDAVYIP 93 (350)
T ss_dssp CSSCSEEEEC
T ss_pred CCCCCEEEEe
Confidence 468999987
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.15 Score=49.55 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=40.4
Q ss_pred cCCCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-C
Q 013466 94 KKMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-E 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~-la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~ 171 (442)
++++||+|||+ |.+|.. ++..|...+-+ +.+.+ .|++.++++..+..+. . .. .++++++ .
T Consensus 3 m~~~~vgiiG~-G~~g~~~~~~~l~~~~~~---~lvav----~d~~~~~~~~~~~~~g-~--------~~-~~~~~~l~~ 64 (319)
T 1tlt_A 3 LKKLRIGVVGL-GGIAQKAWLPVLAAASDW---TLQGA----WSPTRAKALPICESWR-I--------PY-ADSLSSLAA 64 (319)
T ss_dssp --CEEEEEECC-STHHHHTHHHHHHSCSSE---EEEEE----ECSSCTTHHHHHHHHT-C--------CB-CSSHHHHHT
T ss_pred CCcceEEEECC-CHHHHHHHHHHHHhCCCe---EEEEE----ECCCHHHHHHHHHHcC-C--------Cc-cCcHHHhhc
Confidence 35689999995 999986 88877653321 11223 2555566654443321 1 11 2345555 6
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+|+++.
T Consensus 65 ~~D~V~i~t 73 (319)
T 1tlt_A 65 SCDAVFVHS 73 (319)
T ss_dssp TCSEEEECS
T ss_pred CCCEEEEeC
Confidence 899999873
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.14 Score=50.76 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=44.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~- 171 (442)
+.+++||+|||+ |.+|..++..|...+-+ +.+.+ .|++.++++..+..+. .......+.+..+.++
T Consensus 3 ~~~~~~vgiiG~-G~ig~~~~~~l~~~~~~---~lv~v----~d~~~~~~~~~a~~~~-----~~~~~~~~~~~~~ll~~ 69 (362)
T 1ydw_A 3 TETQIRIGVMGC-ADIARKVSRAIHLAPNA---TISGV----ASRSLEKAKAFATANN-----YPESTKIHGSYESLLED 69 (362)
T ss_dssp ---CEEEEEESC-CTTHHHHHHHHHHCTTE---EEEEE----ECSSHHHHHHHHHHTT-----CCTTCEEESSHHHHHHC
T ss_pred CCCceEEEEECc-hHHHHHHHHHHhhCCCc---EEEEE----EcCCHHHHHHHHHHhC-----CCCCCeeeCCHHHHhcC
Confidence 345789999995 99999998888764421 11223 3556666655544322 1012344454445554
Q ss_pred -CCcEEEEeC
Q 013466 172 -DAEWALLIG 180 (442)
Q Consensus 172 -dADiVIi~a 180 (442)
++|+|+++.
T Consensus 70 ~~~D~V~i~t 79 (362)
T 1ydw_A 70 PEIDALYVPL 79 (362)
T ss_dssp TTCCEEEECC
T ss_pred CCCCEEEEcC
Confidence 599999973
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.27 Score=48.48 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=44.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc--C
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--E 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal--~ 171 (442)
++++||+|||+ |.+|...+..|...+- +.|.-+ .|++.++++..+..+. . ..+++..+.+ .
T Consensus 3 ~~~~~vgiiG~-G~~g~~~~~~l~~~~~------~~lvav-~d~~~~~~~~~~~~~g-~--------~~~~~~~~~l~~~ 65 (354)
T 3db2_A 3 YNPVGVAAIGL-GRWAYVMADAYTKSEK------LKLVTC-YSRTEDKREKFGKRYN-C--------AGDATMEALLARE 65 (354)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHTTCSS------EEEEEE-ECSSHHHHHHHHHHHT-C--------CCCSSHHHHHHCS
T ss_pred CCcceEEEEcc-CHHHHHHHHHHHhCCC------cEEEEE-ECCCHHHHHHHHHHcC-C--------CCcCCHHHHhcCC
Confidence 34689999995 9999999988876532 222211 3556666665544331 1 1234445566 5
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+|+++.
T Consensus 66 ~~D~V~i~t 74 (354)
T 3db2_A 66 DVEMVIITV 74 (354)
T ss_dssp SCCEEEECS
T ss_pred CCCEEEEeC
Confidence 799999873
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=1.3 Score=43.04 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc-----ccchhhhHHHHHHHHhcccCCCcccEEEecCcc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG-----SERSLQALEGVAMELEDSLFPLLREVKIGINPY--- 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d-----~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~--- 167 (442)
.++|.|+||+|+||.+++..|+..|. .|.+.+.+ ..++.++++..+.++.... . .+..-..+.
T Consensus 9 gk~~lVTGas~GIG~~~a~~La~~Ga-----~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~---~~~~D~~~~~~~ 79 (319)
T 1gz6_A 9 GRVVLVTGAGGGLGRAYALAFAERGA-----LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-G---KAVANYDSVEAG 79 (319)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-C---EEEEECCCGGGH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEcCCcccccccCCHHHHHHHHHHHHhhC-C---eEEEeCCCHHHH
Confidence 35799999999999999999999874 25553321 1234455665655554321 1 111111111
Q ss_pred --------cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 --------ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 --------eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..+|....+. ++. ...+..|.. +.+...+.+.+. ..+.||+++--
T Consensus 80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--~~grIV~vsS~ 152 (319)
T 1gz6_A 80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTASA 152 (319)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEECCh
Confidence 22457899999998654321 221 223455543 344445555553 45788888753
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.092 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|+||+|.||..++..|...+.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~ 41 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPH 41 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSS
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999987653
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.27 Score=48.54 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
+||+|+||+|.+|..++..|..++
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~ 24 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARN 24 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 589999999999999999988654
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.25 Score=49.13 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|+|+ |++|+.++..|+..|+- .|.|+|.|. |....+++..+..|.... |. .++
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg----~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln-p~-v~v 108 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVK----GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN-PM-VDV 108 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCS----EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC-TT-SEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC----EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC-CC-eEE
Confidence 359999995 99999999999999962 366654321 111235666666565443 32 134
Q ss_pred EEecC-----cccccCCCcEEEEeC
Q 013466 161 KIGIN-----PYELFEDAEWALLIG 180 (442)
Q Consensus 161 ~i~~~-----~~eal~dADiVIi~a 180 (442)
..... ..+.+++.|+||.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~dvVv~~~ 133 (346)
T 1y8q_A 109 KVDTEDIEKKPESFFTQFDAVCLTC 133 (346)
T ss_dssp EEECSCGGGCCHHHHTTCSEEEEES
T ss_pred EEEecccCcchHHHhcCCCEEEEcC
Confidence 33322 345678999999873
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.11 Score=51.72 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
++|+||| .|.||..++..|...|. .|.. + |++.... . . .....+..+.+++||+|
T Consensus 172 ktiGIIG-lG~IG~~vA~~l~~~G~-----~V~~--~--dr~~~~~----------~-~----~~~~~sl~ell~~aDvV 226 (340)
T 4dgs_A 172 KRIGVLG-LGQIGRALASRAEAFGM-----SVRY--W--NRSTLSG----------V-D----WIAHQSPVDLARDSDVL 226 (340)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE--E--CSSCCTT----------S-C----CEECSSHHHHHHTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEEE--E--cCCcccc----------c-C----ceecCCHHHHHhcCCEE
Confidence 6999999 59999999999987664 2444 2 3332220 0 1 12234567889999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
++..
T Consensus 227 il~v 230 (340)
T 4dgs_A 227 AVCV 230 (340)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9973
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.31 Score=46.08 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--cc------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY------ 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~~------ 167 (442)
++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++.. .. . .+. +..| +.
T Consensus 17 k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~----~~---~---~~~~~~~Dv~d~~~v~~~ 77 (266)
T 3p19_A 17 KLVVITGASSGIGEAIARRFSEEGH-----PLLLL----ARRVERLKAL----NL---P---NTLCAQVDVTDKYTFDTA 77 (266)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----CEEEE----ESCHHHHHTT----CC---T---TEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHh----hc---C---CceEEEecCCCHHHHHHH
Confidence 4788999999999999999999885 25553 4444443321 10 0 111 1111 11
Q ss_pred -----cccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 -----ELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 -----eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+.+...|++|..||...... .+. ...+..|.. +.+.+.+.+.+. ..+.||+++--
T Consensus 78 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~~g~IV~isS~ 147 (266)
T 3p19_A 78 ITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR--NCGTIINISSI 147 (266)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcEEEEEcCh
Confidence 22337899999988643211 121 234555543 444555666553 45777777754
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.29 Score=47.57 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=64.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc------cchhhhHHHHHHHHhcccCCCcccEEEe-cC--cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS------ERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~------d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~ 167 (442)
.+|.|+||+|+||.+++..|+..|. .+.+.+.+. ..+.+.++..+.++.... .++... .| +.
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~-----~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~ 98 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGA-----RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG----GEAVADGSNVADW 98 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT----CEEEEECCCTTSH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEeCcccccccccccHHHHHHHHHHHHhcC----CcEEEEECCCCCH
Confidence 5788999999999999999999884 255532210 011345565655554321 122221 11 11
Q ss_pred c-----------ccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhh----CCCeEEEEeC
Q 013466 168 E-----------LFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVA----SRNVKVIVVG 222 (442)
Q Consensus 168 e-----------al~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a----~p~a~vivvt 222 (442)
+ .+...|++|..||...... .+. ...+..|.. +++...+.+.+.. ...+.||+++
T Consensus 99 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~is 178 (322)
T 3qlj_A 99 DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTS 178 (322)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEc
Confidence 1 1237899999988653211 121 234555644 3333334433321 0137888887
Q ss_pred Cc
Q 013466 223 NP 224 (442)
Q Consensus 223 NP 224 (442)
--
T Consensus 179 S~ 180 (322)
T 3qlj_A 179 SG 180 (322)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.31 Score=48.52 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc---------------cchhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS---------------ERSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~---------------d~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|||+ |++|+.++..|+..|+ + .|.|.+.|. |....+++..+..|.... |.. ++
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGv-g---~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v-~v 190 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGI-G---EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN-SEI-SV 190 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTC-S---EEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TTS-EE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC-C---eEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC-CCC-eE
Confidence 459999996 9999999999999996 2 366655432 111235555555555433 321 23
Q ss_pred EEec-----Cc-ccccCCCcEEEEeCC
Q 013466 161 KIGI-----NP-YELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~-----~~-~eal~dADiVIi~ag 181 (442)
.... .. .+.++++|+||.+..
T Consensus 191 ~~~~~~i~~~~~~~~~~~~DlVvd~~D 217 (353)
T 3h5n_A 191 SEIALNINDYTDLHKVPEADIWVVSAD 217 (353)
T ss_dssp EEEECCCCSGGGGGGSCCCSEEEECCC
T ss_pred EEeecccCchhhhhHhccCCEEEEecC
Confidence 2211 11 223899999998643
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.11 Score=51.69 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEec
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLL 133 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~ 133 (442)
..||.|+|| |++|+.++..|+..|+ + .|.|.+.
T Consensus 34 ~~~VlIvGa-GGlGs~va~~La~aGV-g---~ItlvD~ 66 (340)
T 3rui_A 34 NTKVLLLGA-GTLGCYVSRALIAWGV-R---KITFVDN 66 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-C---EEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC-C---EEEEecC
Confidence 469999996 9999999999999997 2 3666543
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.32 Score=49.90 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|. |.||..++..|...|. .|.. + |++..... .+.+. . +.. .+..+++++||+
T Consensus 211 GktVgIiG~-G~IG~~vA~~Lka~Ga-----~Viv--~--D~~p~~a~-~A~~~-----G----~~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 211 GKTACVCGY-GDVGKGCAAALRGFGA-----RVVV--T--EVDPINAL-QAAME-----G----YQV-LLVEDVVEEAHI 269 (436)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHH-HHHHT-----T----CEE-CCHHHHTTTCSE
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCC-----EEEE--E--CCChhhhH-HHHHh-----C----Cee-cCHHHHHhhCCE
Confidence 469999995 9999999999998764 2444 3 33333322 11111 1 111 356789999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|+.+.+.. ++-.. +.+... .++++|++++++.
T Consensus 270 Vilt~gt~---~iI~~--------------e~l~~M-K~gAIVINvgRg~ 301 (436)
T 3h9u_A 270 FVTTTGND---DIITS--------------EHFPRM-RDDAIVCNIGHFD 301 (436)
T ss_dssp EEECSSCS---CSBCT--------------TTGGGC-CTTEEEEECSSSG
T ss_pred EEECCCCc---CccCH--------------HHHhhc-CCCcEEEEeCCCC
Confidence 99875422 21000 112333 5899999999774
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.023 Score=54.33 Aligned_cols=106 Identities=17% Similarity=0.053 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc----cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~--~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~----~eal 170 (442)
+||.|+||+|.||++++..|+.. +. .|.+. +++....+ . ..... -+..-..+ .+++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~~----~r~~~~~~-~---~~~~~-----~~~~D~~d~~~~~~~~ 64 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTE-----NVIAS----DIRKLNTD-V---VNSGP-----FEVVNALDFNQIEHLV 64 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGG-----GEEEE----ESCCCSCH-H---HHSSC-----EEECCTTCHHHHHHHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCC-----EEEEE----cCCCcccc-c---cCCCc-----eEEecCCCHHHHHHHH
Confidence 58999999999999999999986 53 24442 22222211 1 01110 01110111 2345
Q ss_pred C--CCcEEEEeCCcCCCCC-CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 E--DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~--dADiVIi~ag~~~kpg-~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+ ++|+||.+++...... .+..+.+..|..-...+.+.+.+. + -..++.+|
T Consensus 65 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~v~~S 117 (312)
T 2yy7_A 65 EVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-K-IKKIFWPS 117 (312)
T ss_dssp HHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-S-CSEEECCE
T ss_pred hhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-C-CCEEEEec
Confidence 5 8999999987532111 234456778888888888887763 2 22555554
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.029 Score=53.83 Aligned_cols=101 Identities=15% Similarity=0.069 Sum_probs=58.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHc--CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCc----cccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAG--EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINP----YELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~--~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~----~eal 170 (442)
||.|+||+|.||++++..|+.. +. .|.... ++..... .. .+.. -..+ .+++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~-----~V~~~~----r~~~~~~-------~~------~~~~~D~~d~~~~~~~~ 58 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKK-----NVIASD----IVQRDTG-------GI------KFITLDVSNRDEIDRAV 58 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGG-----GEEEEE----SSCCCCT-------TC------CEEECCTTCHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCC-----EEEEec----CCCcccc-------Cc------eEEEecCCCHHHHHHHH
Confidence 5899999999999999999986 42 244322 2111111 00 0110 0011 2345
Q ss_pred C--CCcEEEEeCCcCCCCC-CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 E--DAEWALLIGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~--dADiVIi~ag~~~kpg-~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+ +.|+||.+++...... .+..+.+..|..-...+.+.+.+. +. ..++.+|
T Consensus 59 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~~v~~S 111 (317)
T 3ajr_A 59 EKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RV-EKVVIPS 111 (317)
T ss_dssp HHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred hhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CC-CEEEEec
Confidence 4 8999999987532111 133456778888888888887774 22 3555554
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.087 Score=48.22 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
.+++.|+||+|+||.+++..|+..|. .+.+. +++.+ .|+.+... + ..-.+.+...|+
T Consensus 6 ~k~vlVTGas~gIG~~~a~~l~~~G~-----~V~~~----~r~~~------~D~~~~~~-----v---~~~~~~~g~id~ 62 (223)
T 3uce_A 6 KTVYVVLGGTSGIGAELAKQLESEHT-----IVHVA----SRQTG------LDISDEKS-----V---YHYFETIGAFDH 62 (223)
T ss_dssp CEEEEEETTTSHHHHHHHHHHCSTTE-----EEEEE----SGGGT------CCTTCHHH-----H---HHHHHHHCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEe----cCCcc------cCCCCHHH-----H---HHHHHHhCCCCE
Confidence 35788999999999999999998774 24442 33222 23332210 0 001123356899
Q ss_pred EEEeCCcCC--CCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPR--GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~--kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+|..+|... .+- .+. ...+..|..-...+.+.+..+-.+.+.|++++--
T Consensus 63 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 63 LIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp EEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred EEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 999888542 221 222 2345667655555555555443235678887753
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.00 E-value=1 Score=42.12 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=64.2
Q ss_pred CEEEEEcCCC--chHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c-----
Q 013466 97 VNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P----- 166 (442)
Q Consensus 97 ~KI~IIGA~G--~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~----- 166 (442)
+.+.|.||+| +||..++..|++.|. .|.+. +++++.++..+..++....+ ++. +..| +
T Consensus 7 K~alVTGaa~~~GIG~aiA~~la~~Ga-----~Vvi~----~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~ 74 (256)
T 4fs3_A 7 KTYVIMGIANKRSIAFGVAKVLDQLGA-----KLVFT----YRKERSRKELEKLLEQLNQP---EAHLYQIDVQSDEEVI 74 (256)
T ss_dssp CEEEEECCCSTTCHHHHHHHHHHHTTC-----EEEEE----ESSGGGHHHHHHHHGGGTCS---SCEEEECCTTCHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcCCC---cEEEEEccCCCHHHHH
Confidence 4677889877 899999999999885 36663 45555666555555533211 111 1111 1
Q ss_pred ------ccccCCCcEEEEeCCcCCC-----C--CCcHHhH---HHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ------YELFEDAEWALLIGAKPRG-----P--GMERAGL---LDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ------~eal~dADiVIi~ag~~~k-----p--g~~r~dl---l~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|++|..+|.... + ..+..++ +..|..-....+.....+....+.||+++-
T Consensus 75 ~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 75 NGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 3446689999998875321 1 1223322 233433333333333333334678888774
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.24 Score=47.27 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc--CCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal--~dA 173 (442)
..+|.|+|| |++|..++..|+..| . .|.+ .+++.++++..+.++... . .+.. . +.+.+ .++
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~G-~----~V~v----~~R~~~~~~~la~~~~~~--~---~~~~-~-~~~~~~~~~~ 181 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSLD-C----AVTI----TNRTVSRAEELAKLFAHT--G---SIQA-L-SMDELEGHEF 181 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT-C----EEEE----ECSSHHHHHHHHHHTGGG--S---SEEE-C-CSGGGTTCCC
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcC-C----EEEE----EECCHHHHHHHHHHhhcc--C---CeeE-e-cHHHhccCCC
Confidence 468999996 999999999999988 2 2555 366667777676655421 1 2222 1 22344 489
Q ss_pred cEEEEeCCcCC
Q 013466 174 EWALLIGAKPR 184 (442)
Q Consensus 174 DiVIi~ag~~~ 184 (442)
|+||.+.+.+.
T Consensus 182 DivVn~t~~~~ 192 (271)
T 1nyt_A 182 DLIINATSSGI 192 (271)
T ss_dssp SEEEECCSCGG
T ss_pred CEEEECCCCCC
Confidence 99999877543
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.28 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
++||+|+||+|.+|..++..|...+
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p 32 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHP 32 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCS
T ss_pred cceEEEECcCCHHHHHHHHHHhcCC
Confidence 3699999999999999999887654
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.038 Score=59.44 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC---c---
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P--- 166 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~---~--- 166 (442)
++++|.|+||+|.||++++..|+.. +. .|.+. +++...+.. +... .++.+. .| .
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~-----~V~~~----~r~~~~~~~----~~~~-----~~v~~v~~Dl~d~~~~ 375 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHY-----EVYGL----DIGSDAISR----FLNH-----PHFHFVEGDISIHSEW 375 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSE-----EEEEE----ESCCTTTGG----GTTC-----TTEEEEECCTTTCHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCC-----EEEEE----EcCchhhhh----hccC-----CceEEEECCCCCcHHH
Confidence 4579999999999999999999986 43 23332 333222211 1100 122221 11 1
Q ss_pred -ccccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -~eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.++++++|+||.+|+....+. .+..+.+..|..-...+.+.+.+. + ..++++|-
T Consensus 376 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~--~r~V~~SS 432 (660)
T 1z7e_A 376 IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R--KRIIFPST 432 (660)
T ss_dssp HHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T--CEEEEECC
T ss_pred HHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C--CEEEEEec
Confidence 125668999999988543211 133456677877778888887774 3 56777765
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.17 Score=48.65 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC-CCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-PLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~-~~~~~v~i~~~~~eal~dAD 174 (442)
..+|.|+|| |++|..++..|+..| . |.+. +++.++++..+.++..... .....+.+. +..+.+.++|
T Consensus 128 ~k~vlV~Ga-GgiG~aia~~L~~~G---~---V~v~----~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D 195 (287)
T 1nvt_A 128 DKNIVIYGA-GGAARAVAFELAKDN---N---IIIA----NRTVEKAEALAKEIAEKLNKKFGEEVKFS-GLDVDLDGVD 195 (287)
T ss_dssp SCEEEEECC-SHHHHHHHHHHTSSS---E---EEEE----CSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CTTCCCTTCC
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCC---C---EEEE----ECCHHHHHHHHHHHhhhcccccceeEEEe-eHHHhhCCCC
Confidence 468999996 899999999999876 2 6553 5666777777666643100 000122332 2367889999
Q ss_pred EEEEeCCcCCCC
Q 013466 175 WALLIGAKPRGP 186 (442)
Q Consensus 175 iVIi~ag~~~kp 186 (442)
+||.++|.+..|
T Consensus 196 ilVn~ag~~~~~ 207 (287)
T 1nvt_A 196 IIINATPIGMYP 207 (287)
T ss_dssp EEEECSCTTCTT
T ss_pred EEEECCCCCCCC
Confidence 999998866543
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.13 Score=50.85 Aligned_cols=102 Identities=25% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC---c----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---P----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~---~----~ 167 (442)
++||.|+||+|.+|++++..|+..+. .|... +++.+... +.++... + .+.+ ..| + .
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~----~R~~~~~~--~~~l~~~--~---~v~~v~~D~l~d~~~l~ 68 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH-----HVRAQ----VHSLKGLI--AEELQAI--P---NVTLFQGPLLNNVPLMD 68 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC-----CEEEE----ESCSCSHH--HHHHHTS--T---TEEEEESCCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-----EEEEE----ECCCChhh--HHHHhhc--C---CcEEEECCccCCHHHHH
Confidence 46899999999999999999998763 24442 23333321 1223211 0 1221 222 1 3
Q ss_pred cccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
++++++|+||..++... . ..|... +.+++.+.+. +.-..++.+|-.
T Consensus 69 ~~~~~~d~Vi~~a~~~~---~------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~ 114 (352)
T 1xgk_A 69 TLFEGAHLAFINTTSQA---G------DEIAIG-KDLADAAKRA-GTIQHYIYSSMP 114 (352)
T ss_dssp HHHTTCSEEEECCCSTT---S------CHHHHH-HHHHHHHHHH-SCCSEEEEEECC
T ss_pred HHHhcCCEEEEcCCCCC---c------HHHHHH-HHHHHHHHHc-CCccEEEEeCCc
Confidence 46889999997655321 1 124333 6666666663 212356666644
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.096 Score=51.42 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
...+|+|||+ |.+|...+..|....-+. .|.++ |++ +++..+.++.+.. . ..+... +..+++++||
T Consensus 120 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~---~V~v~----~r~--~a~~la~~l~~~~-g--~~~~~~-~~~eav~~aD 185 (313)
T 3hdj_A 120 RSSVLGLFGA-GTQGAEHAAQLSARFALE---AILVH----DPY--ASPEILERIGRRC-G--VPARMA-APADIAAQAD 185 (313)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHSCCC---EEEEE----CTT--CCHHHHHHHHHHH-T--SCEEEC-CHHHHHHHCS
T ss_pred CCcEEEEECc-cHHHHHHHHHHHHhCCCc---EEEEE----CCc--HHHHHHHHHHHhc-C--CeEEEe-CHHHHHhhCC
Confidence 3579999995 999999999888632232 36553 444 5555666554321 1 134555 6788999999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||.+-.
T Consensus 186 IVi~aT~ 192 (313)
T 3hdj_A 186 IVVTATR 192 (313)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998643
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=92.85 E-value=1.2 Score=41.82 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEE-ecC--c---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i-~~~--~--- 166 (442)
.+++.|+||+|+||.+++..|+..|. .+.+...+.+..+ +.++..+.++.... .++.. ..| +
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~-----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~ 76 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGA-----NVAIAAKSAVANPKLPGTIHSAAAAVNAAG----GQGLALKCDIREEDQ 76 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEESCCSCCTTSCCCHHHHHHHHHHHT----SEEEEEECCTTCHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-----EEEEEeccchhhhhhHHHHHHHHHHHHhcC----CeEEEEeCCCCCHHH
Confidence 45899999999999999999999884 2555433221110 12444444443221 12221 111 1
Q ss_pred --------ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 --------YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 --------~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+...|++|..+|...... .+. ...+..|.. +.+...+.+.+ ...+.|++++-..
T Consensus 77 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~~~g~iv~isS~~ 151 (274)
T 3e03_A 77 VRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQ--APNPHILTLAPPP 151 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--SSSCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHh--cCCceEEEECChH
Confidence 122347899999988643221 121 234455544 44444455554 2467888887643
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.18 Score=49.55 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch---hhhHHHHHHHHhcccCCCcccEEE-ecCc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKI-GINP----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~---~~~l~g~a~DL~~~~~~~~~~v~i-~~~~----~ 167 (442)
..++.|+|| |++|.+++..|+..|. ..|.+ .+++ .++++.++.++.... + ..+.. ...+ .
T Consensus 148 gk~~lVlGA-GGaaraia~~L~~~G~----~~v~v----~nRt~~~~~~a~~la~~~~~~~-~--~~v~~~~~~~l~~~~ 215 (312)
T 3t4e_A 148 GKTMVLLGA-GGAATAIGAQAAIEGI----KEIKL----FNRKDDFFEKAVAFAKRVNENT-D--CVVTVTDLADQHAFT 215 (312)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----EECSSTHHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCC----CEEEE----EECCCchHHHHHHHHHHhhhcc-C--cceEEechHhhhhhH
Confidence 468999996 9999999999999775 23555 3666 677787777775321 1 12322 2222 4
Q ss_pred cccCCCcEEEEeCC
Q 013466 168 ELFEDAEWALLIGA 181 (442)
Q Consensus 168 eal~dADiVIi~ag 181 (442)
+.+.++|+||.+-.
T Consensus 216 ~~l~~~DiIINaTp 229 (312)
T 3t4e_A 216 EALASADILTNGTK 229 (312)
T ss_dssp HHHHHCSEEEECSS
T ss_pred hhccCceEEEECCc
Confidence 56789999998643
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.048 Score=53.92 Aligned_cols=118 Identities=12% Similarity=0.035 Sum_probs=59.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-hhhhHHHHHHHHhcccCCCcc-cEEEe-cC--c----c
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-SLQALEGVAMELEDSLFPLLR-EVKIG-IN--P----Y 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~-~~~~l~g~a~DL~~~~~~~~~-~v~i~-~~--~----~ 167 (442)
++|.|+||+|.||++++..|+..|. .|.+.....+. ..+.++....++.. ... .+.+. .| + .
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~ 99 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGY-----EVHGLIRRSSNFNTQRINHIYIDPHN----VNKALMKLHYADLTDASSLR 99 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCCSSCCCTTTTTTC------------CCEEEEECCTTCHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCC-----EEEEEecCCccccchhhhhhhhcccc----ccccceEEEECCCCCHHHHH
Confidence 5899999999999999999998773 24332211110 00011111000000 000 22221 11 1 2
Q ss_pred cccCC--CcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhh---CCCeEEEEeCC
Q 013466 168 ELFED--AEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVA---SRNVKVIVVGN 223 (442)
Q Consensus 168 eal~d--ADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a---~p~a~vivvtN 223 (442)
+++++ .|+||.+++..... ..+....+..|..-...+.+.+.+.. +..+.||.++-
T Consensus 100 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS 162 (381)
T 1n7h_A 100 RWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS 162 (381)
T ss_dssp HHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred HHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCc
Confidence 34444 59999998854311 01233456667666666776665532 12346776653
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.76 E-value=1.8 Score=40.37 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHH---HHHHHhcccCCCcccEE-EecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVK-IGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g---~a~DL~~~~~~~~~~v~-i~~~~~eal~ 171 (442)
.++|.|+||+|+||.+++..|+..|. .+.+. +++.+.++. +..|+.+.. .+. ......+.+.
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~Dl~d~~-----~v~~~~~~~~~~~g 86 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGLAIARAFADAGD-----KVAIT----YRSGEPPEGFLAVKCDITDTE-----QVEQAYKEIEETHG 86 (253)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSSCCCTTSEEEECCTTSHH-----HHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCChHhhccceEEEecCCCHH-----HHHHHHHHHHHHcC
Confidence 45899999999999999999999874 24443 222222211 000111100 000 0000112234
Q ss_pred CCcEEEEeCCcCCC-C-----CCcHHhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 172 DAEWALLIGAKPRG-P-----GMERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 172 dADiVIi~ag~~~k-p-----g~~r~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..|++|..+|.... + ..+-...+..|.. +++...+.+.+. ..+.|++++--
T Consensus 87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~--~~g~iv~isS~ 147 (253)
T 2nm0_A 87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA--KKGRVVLISSV 147 (253)
T ss_dssp SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECch
Confidence 57999998886432 1 1122344555644 344444555553 45777777753
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.23 Score=48.79 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch---hhhHHHHHHHHhcccCCCcccEEEe-cCc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS---LQALEGVAMELEDSLFPLLREVKIG-INP----Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~---~~~l~g~a~DL~~~~~~~~~~v~i~-~~~----~ 167 (442)
..++.|+|| |++|.+++..|+..|. ..|.+. +++ .++++..+.++.... + ..+... .++ .
T Consensus 154 gk~~lVlGa-GG~g~aia~~L~~~Ga----~~V~i~----nR~~~~~~~a~~la~~~~~~~-~--~~~~~~~~~~~~~l~ 221 (315)
T 3tnl_A 154 GKKMTICGA-GGAATAICIQAALDGV----KEISIF----NRKDDFYANAEKTVEKINSKT-D--CKAQLFDIEDHEQLR 221 (315)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTTC----SEEEEE----ECSSTTHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHHCCC----CEEEEE----ECCCchHHHHHHHHHHhhhhc-C--CceEEeccchHHHHH
Confidence 468999996 9999999999999775 236553 566 677777777775432 2 123322 222 3
Q ss_pred cccCCCcEEEEeCC
Q 013466 168 ELFEDAEWALLIGA 181 (442)
Q Consensus 168 eal~dADiVIi~ag 181 (442)
+.+.++|+||.+-.
T Consensus 222 ~~l~~aDiIINaTp 235 (315)
T 3tnl_A 222 KEIAESVIFTNATG 235 (315)
T ss_dssp HHHHTCSEEEECSS
T ss_pred hhhcCCCEEEECcc
Confidence 45779999998743
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.21 Score=47.89 Aligned_cols=115 Identities=8% Similarity=-0.025 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c----
Q 013466 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P---- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~--VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~---- 166 (442)
.++|.|+||+|+ ||.+++..|+..|. .|.+. +++....+ ...++.... + ++. +..| +
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~-~~~~~~~~~-~---~~~~~~~Dv~d~~~v 96 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGA-----ELAFT----YQGDALKK-RVEPLAEEL-G---AFVAGHCDVADAASI 96 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTC-----EEEEE----ECSHHHHH-HHHHHHHHH-T---CEEEEECCTTCHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-----EEEEE----cCCHHHHH-HHHHHHHhc-C---CceEEECCCCCHHHH
Confidence 357899999877 99999999999884 25453 33322221 222222111 1 111 1111 1
Q ss_pred -------ccccCCCcEEEEeCCcCC-----CCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -------YELFEDAEWALLIGAKPR-----GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -------~eal~dADiVIi~ag~~~-----kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+- .+. ...+..|..-...+.+.+..+-...+.|++++-.
T Consensus 97 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~ 171 (293)
T 3grk_A 97 DAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY 171 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred HHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence 122347899999998653 221 121 2345666555555555544432246778877753
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.2 Score=47.87 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-C-CC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-E-DA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~-dA 173 (442)
.++|.|+|| |++|..++..|+..| . .|.+ .+++.++++..+.++... . .+... +.+++ + ++
T Consensus 119 ~~~vlvlGa-Gg~g~a~a~~L~~~G-~----~v~v----~~R~~~~a~~l~~~~~~~--~---~~~~~--~~~~~~~~~~ 181 (272)
T 1p77_A 119 NQHVLILGA-GGATKGVLLPLLQAQ-Q----NIVL----ANRTFSKTKELAERFQPY--G---NIQAV--SMDSIPLQTY 181 (272)
T ss_dssp TCEEEEECC-SHHHHTTHHHHHHTT-C----EEEE----EESSHHHHHHHHHHHGGG--S---CEEEE--EGGGCCCSCC
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-C----EEEE----EECCHHHHHHHHHHcccc--C---CeEEe--eHHHhccCCC
Confidence 468999996 999999999999987 2 2555 366777777777665421 1 12221 23445 3 89
Q ss_pred cEEEEeCCcCC
Q 013466 174 EWALLIGAKPR 184 (442)
Q Consensus 174 DiVIi~ag~~~ 184 (442)
|+||.+.+.+.
T Consensus 182 DivIn~t~~~~ 192 (272)
T 1p77_A 182 DLVINATSAGL 192 (272)
T ss_dssp SEEEECCCC--
T ss_pred CEEEECCCCCC
Confidence 99999877543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.2 Score=49.67 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=44.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~- 171 (442)
++++||+|||+ |.+|...+..|. ..+-+ +.+.+ .|++.++++..+..+.- ....+++..+.++
T Consensus 21 m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~---~lvav----~d~~~~~~~~~a~~~g~-------~~~~~~~~~~ll~~ 85 (357)
T 3ec7_A 21 GMTLKAGIVGI-GMIGSDHLRRLANTVSGV---EVVAV----CDIVAGRAQAALDKYAI-------EAKDYNDYHDLIND 85 (357)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHTCTTE---EEEEE----ECSSTTHHHHHHHHHTC-------CCEEESSHHHHHHC
T ss_pred CCeeeEEEECC-cHHHHHHHHHHHhhCCCc---EEEEE----EeCCHHHHHHHHHHhCC-------CCeeeCCHHHHhcC
Confidence 34579999995 999999999888 43321 11223 25566676655544320 1344455555565
Q ss_pred -CCcEEEEeC
Q 013466 172 -DAEWALLIG 180 (442)
Q Consensus 172 -dADiVIi~a 180 (442)
+.|+|+++.
T Consensus 86 ~~~D~V~i~t 95 (357)
T 3ec7_A 86 KDVEVVIITA 95 (357)
T ss_dssp TTCCEEEECS
T ss_pred CCCCEEEEcC
Confidence 589999874
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.11 Score=49.67 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
.+++.|+||+|+||.+++..|+..|. .|.+. +++.+.++....++. .++.. ..| +
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~ 68 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGA-----RVAVL----DKSAERLRELEVAHG-------GNAVGVVGDVRSLQDQKR 68 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHTB-------TTEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEE----eCCHHHHHHHHHHcC-------CcEEEEEcCCCCHHHHHH
Confidence 45789999999999999999999884 25552 555566655444331 11221 111 1
Q ss_pred -----ccccCCCcEEEEeCCcC
Q 013466 167 -----YELFEDAEWALLIGAKP 183 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~ 183 (442)
.+.+..-|++|..+|..
T Consensus 69 ~~~~~~~~~g~iD~lvnnAg~~ 90 (281)
T 3zv4_A 69 AAERCLAAFGKIDTLIPNAGIW 90 (281)
T ss_dssp HHHHHHHHHSCCCEEECCCCCC
T ss_pred HHHHHHHhcCCCCEEEECCCcC
Confidence 12234679999998863
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.17 Score=51.18 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..+|+|||| |.+|..++..|...|. ..|.+ .+++.++++..+.++...... ..+..+.+.++|
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~----~~V~v----~~r~~~ra~~la~~~g~~~~~-------~~~l~~~l~~aD 229 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGV----RAVLV----ANRTYERAVELARDLGGEAVR-------FDELVDHLARSD 229 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCC----SEEEE----ECSSHHHHHHHHHHHTCEECC-------GGGHHHHHHTCS
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCC----CEEEE----EeCCHHHHHHHHHHcCCceec-------HHhHHHHhcCCC
Confidence 3569999996 9999999999998774 12544 356666665565555311000 123356678999
Q ss_pred EEEEeCCcC
Q 013466 175 WALLIGAKP 183 (442)
Q Consensus 175 iVIi~ag~~ 183 (442)
+||.+.+.+
T Consensus 230 vVi~at~~~ 238 (404)
T 1gpj_A 230 VVVSATAAP 238 (404)
T ss_dssp EEEECCSSS
T ss_pred EEEEccCCC
Confidence 999986644
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.25 Score=46.31 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=61.5
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--ccc---
Q 013466 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~e--- 168 (442)
.++|.|+||+ |+||.+++..|+..|. .|.+. +++.+ ++....++.... +.. ..+..| +.+
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~~----~r~~~-~~~~~~~l~~~~-~~~--~~~~~D~~~~~~v~ 74 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA-----EVALS----YQAER-LRPEAEKLAEAL-GGA--LLFRADVTQDEELD 74 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTC-----EEEEE----ESCGG-GHHHHHHHHHHT-TCC--EEEECCTTCHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEEE----cCCHH-HHHHHHHHHHhc-CCc--EEEECCCCCHHHHH
Confidence 3579999998 8999999999999874 25553 33322 222222332211 100 111111 111
Q ss_pred -c-------cCCCcEEEEeCCcCC-----CCC--Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 169 -L-------FEDAEWALLIGAKPR-----GPG--ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 169 -a-------l~dADiVIi~ag~~~-----kpg--~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
. +...|++|..+|... .+- .+ -...+..|..-...+.+.+..+-...+.||+++-
T Consensus 75 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 147 (261)
T 2wyu_A 75 ALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (261)
T ss_dssp HHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 1 236799999988643 121 12 1334566765555555554443112467777764
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.022 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAA-GE 120 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~-~~ 120 (442)
++++|.|+||+|+||.+++..|+. .+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g 29 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN 29 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC
Confidence 356799999999999999999998 55
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.31 Score=46.00 Aligned_cols=115 Identities=11% Similarity=0.024 Sum_probs=62.3
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--cc----
Q 013466 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PY---- 167 (442)
Q Consensus 96 ~~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~---- 167 (442)
.++|.|+||+ |+||.+++..|+..|. .|.+. +++.+ ++....++.... +.. . .+..| +.
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~-----~V~~~----~r~~~-~~~~~~~l~~~~-~~~-~-~~~~D~~~~~~v~ 72 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAFT----YLNES-LEKRVRPIAQEL-NSP-Y-VYELDVSKEEHFK 72 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEEE----ESSTT-THHHHHHHHHHT-TCC-C-EEECCTTCHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHH-HHHHHHHHHHhc-CCc-E-EEEcCCCCHHHHH
Confidence 3579999998 9999999999999874 25553 33332 222222332211 100 0 11111 11
Q ss_pred -------cccCCCcEEEEeCCcCCC-----C--CCc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 -------ELFEDAEWALLIGAKPRG-----P--GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 -------eal~dADiVIi~ag~~~k-----p--g~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+.+...|++|..+|.... + ..+ -...+..|..-...+.+.+..+-...+.||+++-
T Consensus 73 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 73 SLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp HHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 123367999999886432 2 122 2345566766555566555543212467777774
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.93 Score=44.73 Aligned_cols=119 Identities=12% Similarity=0.066 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEE-ecC--c---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKI-GIN--P--- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i-~~~--~--- 166 (442)
.++|.|+||+|+||.+++..|+..|. .|.+...+.+..+ +.++..+.++.... .++.. ..| +
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga-----~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g----~~~~~~~~Dv~d~~~ 115 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGA-----NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG----GKALPCIVDVRDEQQ 115 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTC-----EEEEEESCCSCCSSSCCCHHHHHHHHHHTT----CEEEEEECCTTCHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCC-----EEEEEECChhhhhhhHHHHHHHHHHHHhcC----CeEEEEEccCCCHHH
Confidence 35799999999999999999999884 2555433222110 12344444454321 12222 111 1
Q ss_pred --------ccccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHHHHH----HHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 --------YELFEDAEWALLIGAKPRG-PG--MER---AGLLDINGQI----FAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 --------~eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N~~I----i~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+...|++|..+|.... +- .+. ...+..|..- .+...+.+.+ ...+.||+++-+.
T Consensus 116 v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~~~g~IV~iSS~~ 190 (346)
T 3kvo_A 116 ISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKK--SKVAHILNISPPL 190 (346)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CSSCEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--CCCCEEEEECCHH
Confidence 1223479999999886432 21 121 2345566443 3444444444 2467888888654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.94 Score=43.42 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=65.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~----------- 165 (442)
+.+.|.||+++||..++..|+..|. .|.+ .+++.+.++..+.++.... ..+..|
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~g~~~------~~~~~Dv~~~~~v~~~~ 94 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA-----RVFI----TGRRKDVLDAAIAEIGGGA------VGIQADSANLAELDRLY 94 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCTTC------EEEECCTTCHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCe------EEEEecCCCHHHHHHHH
Confidence 3566789999999999999999885 2555 3666778887777764221 111111
Q ss_pred --cccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 --PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 --~~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
..+.+..-|++|..||... +|- ++. .+.+..|..-.--+++....+-...+.||+++-
T Consensus 95 ~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 95 EKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 1344567899999887543 332 221 234555644333333332222223566777764
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=92.38 E-value=0.2 Score=48.79 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCC
Q 013466 96 MVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~-~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dA 173 (442)
++||+|||+ |++|. .++..|...+- +.+.. .|++.++++..+..+. . + ....+..+.+ .++
T Consensus 2 ~~~igiIG~-G~ig~~~~~~~l~~~~~------~~l~v--~d~~~~~~~~~a~~~g-~--~-----~~~~~~~~~l~~~~ 64 (323)
T 1xea_A 2 SLKIAMIGL-GDIAQKAYLPVLAQWPD------IELVL--CTRNPKVLGTLATRYR-V--S-----ATCTDYRDVLQYGV 64 (323)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTT------EEEEE--ECSCHHHHHHHHHHTT-C--C-----CCCSSTTGGGGGCC
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCC------ceEEE--EeCCHHHHHHHHHHcC-C--C-----ccccCHHHHhhcCC
Confidence 479999995 99998 58887765431 23332 3566666665544332 1 1 0123445666 789
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++..
T Consensus 65 D~V~i~tp 72 (323)
T 1xea_A 65 DAVMIHAA 72 (323)
T ss_dssp SEEEECSC
T ss_pred CEEEEECC
Confidence 99999843
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.16 Score=49.93 Aligned_cols=69 Identities=23% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dA 173 (442)
|+||+|||+ |.+|...+..|...+- +.+.-+ .|++.++++..+..+.. ...+.+..+.++ ++
T Consensus 2 ~~rvgiIG~-G~~g~~~~~~l~~~~~------~~l~av-~d~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~~~ 65 (344)
T 3ezy_A 2 SLRIGVIGL-GRIGTIHAENLKMIDD------AILYAI-SDVREDRLREMKEKLGV--------EKAYKDPHELIEDPNV 65 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHGGGSTT------EEEEEE-ECSCHHHHHHHHHHHTC--------SEEESSHHHHHHCTTC
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhCCC------cEEEEE-ECCCHHHHHHHHHHhCC--------CceeCCHHHHhcCCCC
Confidence 479999995 9999999888876432 222211 25566666655443321 134455556666 79
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+++.
T Consensus 66 D~V~i~t 72 (344)
T 3ezy_A 66 DAVLVCS 72 (344)
T ss_dssp CEEEECS
T ss_pred CEEEEcC
Confidence 9999974
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.79 Score=43.85 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=63.1
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c-----
Q 013466 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P----- 166 (442)
Q Consensus 96 ~~KI~IIGA~G--~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~----- 166 (442)
.++|.|+||+| +||.+++..|+..|. .|.+.. ++.+..+.. .++.... +. ...+..| +
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~-----~V~~~~----r~~~~~~~~-~~~~~~~-~~--~~~~~~Dv~d~~~v~ 96 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGA-----EVALTY----LSETFKKRV-DPLAESL-GV--KLTVPCDVSDAESVD 96 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-----EEEEEE----SSGGGHHHH-HHHHHHH-TC--CEEEECCTTCHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCC-----EEEEEe----CChHHHHHH-HHHHHhc-CC--eEEEEcCCCCHHHHH
Confidence 35789999977 999999999999885 255533 333222211 1111111 10 0111111 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-----CC--CCcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ------YELFEDAEWALLIGAKPR-----GP--GMER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ------~eal~dADiVIi~ag~~~-----kp--g~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|... .+ ..+. ...+..|..-...+.+.+..+-...+.|++++--
T Consensus 97 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~ 170 (296)
T 3k31_A 97 NMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY 170 (296)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence 122347899999998653 22 1222 2345666655555665555443236778877753
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=92.34 E-value=0.15 Score=54.54 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG 134 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d 134 (442)
..||.|||| |++|+.++..|+..|+ + .|.|.|.|
T Consensus 326 ~arVLIVGa-GGLGs~vA~~La~aGV-G---~ItLvD~D 359 (615)
T 4gsl_A 326 NTKVLLLGA-GTLGCYVSRALIAWGV-R---KITFVDNG 359 (615)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-C---EEEEECCC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-C---EEEEEcCC
Confidence 369999996 9999999999999997 2 36665543
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.33 Score=47.88 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=42.2
Q ss_pred cCCCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-
Q 013466 94 KKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~-~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~- 171 (442)
++++||+|||+ |.+|. .++..|...+-+ +.+.+ .|++.++++..+..+. +....+..+.++
T Consensus 25 m~~~rigiIG~-G~~g~~~~~~~l~~~~~~---~l~av----~d~~~~~~~~~a~~~g---------~~~~~~~~~ll~~ 87 (350)
T 3rc1_A 25 ANPIRVGVIGC-ADIAWRRALPALEAEPLT---EVTAI----ASRRWDRAKRFTERFG---------GEPVEGYPALLER 87 (350)
T ss_dssp -CCEEEEEESC-CHHHHHTHHHHHHHCTTE---EEEEE----EESSHHHHHHHHHHHC---------SEEEESHHHHHTC
T ss_pred CCceEEEEEcC-cHHHHHHHHHHHHhCCCe---EEEEE----EcCCHHHHHHHHHHcC---------CCCcCCHHHHhcC
Confidence 34689999995 99998 788888875321 11223 2555666665544321 122344445555
Q ss_pred -CCcEEEEe
Q 013466 172 -DAEWALLI 179 (442)
Q Consensus 172 -dADiVIi~ 179 (442)
+.|+|+++
T Consensus 88 ~~~D~V~i~ 96 (350)
T 3rc1_A 88 DDVDAVYVP 96 (350)
T ss_dssp TTCSEEEEC
T ss_pred CCCCEEEEC
Confidence 58999987
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.2 Score=48.81 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dA 173 (442)
|+||+|||+ |.+|...+..|...+- +.+.-+ .|++.++++..+..+ . +. +.+..+.++ ++
T Consensus 3 ~~~vgiiG~-G~~g~~~~~~l~~~~~------~~l~av-~d~~~~~~~~~~~~~-----~----~~-~~~~~~~l~~~~~ 64 (331)
T 4hkt_A 3 TVRFGLLGA-GRIGKVHAKAVSGNAD------ARLVAV-ADAFPAAAEAIAGAY-----G----CE-VRTIDAIEAAADI 64 (331)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTT------EEEEEE-ECSSHHHHHHHHHHT-----T----CE-ECCHHHHHHCTTC
T ss_pred ceEEEEECC-CHHHHHHHHHHhhCCC------cEEEEE-ECCCHHHHHHHHHHh-----C----CC-cCCHHHHhcCCCC
Confidence 479999995 9999999998887532 222211 355566665544332 1 22 455556666 79
Q ss_pred cEEEEeC
Q 013466 174 EWALLIG 180 (442)
Q Consensus 174 DiVIi~a 180 (442)
|+|+++.
T Consensus 65 D~V~i~t 71 (331)
T 4hkt_A 65 DAVVICT 71 (331)
T ss_dssp CEEEECS
T ss_pred CEEEEeC
Confidence 9999873
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=1.2 Score=41.90 Aligned_cols=108 Identities=8% Similarity=0.048 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~----------- 165 (442)
++|.|.||+++||..++..|+..|. .|.+. |++++.+...+.+..+. ..+..|
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga-----~V~~~----~~~~~~~~~~~~~~~~~-------~~~~~Dv~~~~~v~~~v 66 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGD-----KVCFI----DIDEKRSADFAKERPNL-------FYFHGDVADPLTLKKFV 66 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHTTCTTE-------EEEECCTTSHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHhcCCE-------EEEEecCCCHHHHHHHH
Confidence 3688999999999999999999885 35553 44555554443322211 111111
Q ss_pred --cccccCCCcEEEEeCCcCCC-C--CCcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 --PYELFEDAEWALLIGAKPRG-P--GMER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 --~~eal~dADiVIi~ag~~~k-p--g~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
..+.+..-|++|..||.... | .++. ...+..|.. ..+...+.+.+. ++.||+++-
T Consensus 67 ~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~---~G~IInisS 133 (247)
T 3ged_A 67 EYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN---KGRIINIAS 133 (247)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TCEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc---CCcEEEEee
Confidence 14456789999998886532 2 1222 223445533 345555666652 467777764
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.37 Score=46.51 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc-CCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF-EDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal-~dA 173 (442)
+..+|.|+|| |++|..++..|+..|.. .|.+ .+++.++++..+.++.... .+... .++++ .++
T Consensus 125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~----~v~v----~~R~~~~a~~la~~~~~~~-----~~~~~--~~~~l~~~a 188 (281)
T 3o8q_A 125 KGATILLIGA-GGAARGVLKPLLDQQPA----SITV----TNRTFAKAEQLAELVAAYG-----EVKAQ--AFEQLKQSY 188 (281)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTCCS----EEEE----EESSHHHHHHHHHHHGGGS-----CEEEE--EGGGCCSCE
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhcCCC----eEEE----EECCHHHHHHHHHHhhccC-----CeeEe--eHHHhcCCC
Confidence 3468999996 99999999999987742 3555 3667778887777765321 22322 22222 789
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||.+-.
T Consensus 189 DiIInaTp 196 (281)
T 3o8q_A 189 DVIINSTS 196 (281)
T ss_dssp EEEEECSC
T ss_pred CEEEEcCc
Confidence 99998744
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.16 Score=49.72 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=43.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~- 171 (442)
.+++||+|||+ |.+|...+..|. ..+-+ +.+.+ .|++.++++..+..+ +. ...+.+..+.++
T Consensus 6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~---~~vav----~d~~~~~~~~~a~~~-----g~---~~~~~~~~~~l~~ 69 (346)
T 3cea_A 6 RKPLRAAIIGL-GRLGERHARHLVNKIQGV---KLVAA----CALDSNQLEWAKNEL-----GV---ETTYTNYKDMIDT 69 (346)
T ss_dssp CCCEEEEEECC-STTHHHHHHHHHHTCSSE---EEEEE----ECSCHHHHHHHHHTT-----CC---SEEESCHHHHHTT
T ss_pred CCcceEEEEcC-CHHHHHHHHHHHhcCCCc---EEEEE----ecCCHHHHHHHHHHh-----CC---CcccCCHHHHhcC
Confidence 35689999995 999999988887 43221 11233 255556665443322 11 133444455565
Q ss_pred -CCcEEEEeCC
Q 013466 172 -DAEWALLIGA 181 (442)
Q Consensus 172 -dADiVIi~ag 181 (442)
++|+|+++..
T Consensus 70 ~~~D~V~i~tp 80 (346)
T 3cea_A 70 ENIDAIFIVAP 80 (346)
T ss_dssp SCCSEEEECSC
T ss_pred CCCCEEEEeCC
Confidence 6999999843
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=92.08 E-value=0.38 Score=44.31 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C-------ccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N-------PYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~-------~~e 168 (442)
++|.|+||+|+||.+++..|+..|. .+.+. +++.+.+ ..++. .. .. ...++. + ..+
T Consensus 3 k~vlVTGas~giG~~~a~~l~~~G~-----~V~~~----~r~~~~~---~~~~~-~~-~~--~~D~~~~~~~~~~~~~~~ 66 (239)
T 2ekp_A 3 RKALVTGGSRGIGRAIAEALVARGY-----RVAIA----SRNPEEA---AQSLG-AV-PL--PTDLEKDDPKGLVKRALE 66 (239)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSCHHH---HHHHT-CE-EE--ECCTTTSCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----eCCHHHH---HHhhC-cE-EE--ecCCchHHHHHHHHHHHH
Confidence 4799999999999999999999874 25443 3333332 12221 10 00 000000 0 012
Q ss_pred ccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~dADiVIi~ag~~~-kpg--~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+...|++|..+|... .+- .+. ...+..|.. +.+...+.+.+. ..+.|++++..
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~--~~g~iv~isS~ 130 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA--GWGRVLFIGSV 130 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcEEEEECch
Confidence 3457899999988643 221 121 233444533 445555555553 35778887753
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.09 Score=51.41 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=40.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-- 171 (442)
++++||+|||+ |.+|..++..|...+-+ +.+.+ .|++.++++..+..+ +. ...+.+..+.+.
T Consensus 3 m~~~rigiiG~-G~ig~~~~~~l~~~~~~---~~~av----~d~~~~~~~~~a~~~-----~~---~~~~~~~~~ll~~~ 66 (329)
T 3evn_A 3 LSKVRYGVVST-AKVAPRFIEGVRLAGNG---EVVAV----SSRTLESAQAFANKY-----HL---PKAYDKLEDMLADE 66 (329)
T ss_dssp --CEEEEEEBC-CTTHHHHHHHHHHHCSE---EEEEE----ECSCSSTTCC---CC-----CC---SCEESCHHHHHTCT
T ss_pred CCceEEEEEec-hHHHHHHHHHHHhCCCc---EEEEE----EcCCHHHHHHHHHHc-----CC---CcccCCHHHHhcCC
Confidence 35689999995 99999999888765432 11233 244555544332211 10 123455556666
Q ss_pred CCcEEEEeC
Q 013466 172 DAEWALLIG 180 (442)
Q Consensus 172 dADiVIi~a 180 (442)
++|+|+++.
T Consensus 67 ~~D~V~i~t 75 (329)
T 3evn_A 67 SIDVIYVAT 75 (329)
T ss_dssp TCCEEEECS
T ss_pred CCCEEEECC
Confidence 799999873
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.00 E-value=0.69 Score=43.82 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=61.2
Q ss_pred CCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--ccc---
Q 013466 96 MVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--PYE--- 168 (442)
Q Consensus 96 ~~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~~e--- 168 (442)
.++|.|+||+ |+||.+++..|+..|. .|.+. +++.+ ++....++.... +.. . .+..| +.+
T Consensus 21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-----~V~~~----~r~~~-~~~~~~~l~~~~-~~~-~-~~~~Dl~~~~~v~ 87 (285)
T 2p91_A 21 GKRALITGVANERSIAYGIAKSFHREGA-----QLAFT----YATPK-LEKRVREIAKGF-GSD-L-VVKCDVSLDEDIK 87 (285)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTC-----EEEEE----ESSGG-GHHHHHHHHHHT-TCC-C-EEECCTTCHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-----EEEEE----eCCHH-HHHHHHHHHHhc-CCe-E-EEEcCCCCHHHHH
Confidence 3579999998 8999999999999874 25553 23322 222222332211 100 0 11111 111
Q ss_pred --------ccCCCcEEEEeCCcCCC-----C--CCcH---HhHHHHHHHHHHHHHHHHHhhhC-CCeEEEEeCC
Q 013466 169 --------LFEDAEWALLIGAKPRG-----P--GMER---AGLLDINGQIFAEQGKALNAVAS-RNVKVIVVGN 223 (442)
Q Consensus 169 --------al~dADiVIi~ag~~~k-----p--g~~r---~dll~~N~~Ii~~i~~~I~~~a~-p~a~vivvtN 223 (442)
.+...|++|..+|.... + ..+. ...+..|..-...+.+.+..+-. ..+.||+++-
T Consensus 88 ~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS 161 (285)
T 2p91_A 88 NLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY 161 (285)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 23478999999886532 2 1121 23456665555555555444321 2467777764
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.32 Score=45.42 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=62.0
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec-C--c---
Q 013466 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P--- 166 (442)
Q Consensus 95 ~~~KI~IIGA~--G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~-~--~--- 166 (442)
+.++|.|+||+ |+||.+++..|+..|. .+.+... +. ...++....++.... + .++.+.. | +
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~~G~-----~v~~~~~--~~-~~~~~~~~~~l~~~~-~--~~~~~~~~Dl~~~~~ 87 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAEMGA-----AVAITYA--SR-AQGAEENVKELEKTY-G--IKAKAYKCQVDSYES 87 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHHTSC-----EEEECBS--SS-SSHHHHHHHHHHHHH-C--CCEECCBCCTTCHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHCCC-----eEEEEeC--Cc-chhHHHHHHHHHHhc-C--CceeEEecCCCCHHH
Confidence 34689999998 8999999999999874 2444222 11 122233344443211 1 1121111 1 1
Q ss_pred --------ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHHHH----HHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 --------YELFEDAEWALLIGAKPRGPG---MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 --------~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N~~----Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+...|++|..+|...... .+. ...+..|.. +.+.+.+.+.+. ..+.|++++-.
T Consensus 88 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~g~iv~isS~ 161 (267)
T 3gdg_A 88 CEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKER--GTGSLVITASM 161 (267)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCG
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHc--CCceEEEEccc
Confidence 222346799999988653221 121 234455533 445555555653 35667776643
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.82 Score=47.36 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.2
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh---hhHHHHHHHHhcccCCCcccEEEec-C--
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFPLLREVKIGI-N-- 165 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~---~~l~g~a~DL~~~~~~~~~~v~i~~-~-- 165 (442)
.|++..+|.|+||+|+||..++..|+..|. ..+.+. +++. +.++....+|.... .++.+.. |
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~----~~vvl~----~R~~~~~~~~~~l~~~l~~~g----~~v~~~~~Dv~ 289 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGA----PHLLLV----SRSGPDADGAGELVAELEALG----ARTTVAACDVT 289 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC----SEEEEE----ESSGGGSTTHHHHHHHHHHTT----CEEEEEECCTT
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCC----CEEEEE----cCCCCCcHHHHHHHHHHHhcC----CEEEEEEeCCC
Confidence 356668999999999999999999998874 124443 2322 23444444554321 1233221 1
Q ss_pred c----ccccCC------CcEEEEeCCcCCCCC---CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 P----YELFED------AEWALLIGAKPRGPG---MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 ~----~eal~d------ADiVIi~ag~~~kpg---~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+ .+.++. .|.||.++|...... ++. ...+..|..-...+.+.+.+. +...|++++-
T Consensus 290 d~~~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~--~~~~~V~~SS 361 (486)
T 2fr1_A 290 DRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFSS 361 (486)
T ss_dssp CHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC--CCCEEEEEcC
Confidence 1 122333 499999998654221 122 233455666666666666553 3456666653
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.54 Score=44.18 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~ 33 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGS 33 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 35899999999999999999999874
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.55 Score=47.92 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=45.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec----Ccccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI----NPYEL 169 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~----~~~ea 169 (442)
++++||+|||+ |.+|...+..|...+-+ +.+.+ .|++.++++..+..+.....+ ....++ +..+.
T Consensus 18 ~~~~rvgiIG~-G~~g~~h~~~l~~~~~~---~lvav----~d~~~~~~~~~a~~~~~~g~~---~~~~~~~~~~~~~~l 86 (444)
T 2ixa_A 18 PKKVRIAFIAV-GLRGQTHVENMARRDDV---EIVAF----ADPDPYMVGRAQEILKKNGKK---PAKVFGNGNDDYKNM 86 (444)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHTCTTE---EEEEE----ECSCHHHHHHHHHHHHHTTCC---CCEEECSSTTTHHHH
T ss_pred CCCceEEEEec-CHHHHHHHHHHHhCCCc---EEEEE----EeCCHHHHHHHHHHHHhcCCC---CCceeccCCCCHHHH
Confidence 45689999995 99999988887754321 11233 356667766555444211111 234455 44455
Q ss_pred cC--CCcEEEEeC
Q 013466 170 FE--DAEWALLIG 180 (442)
Q Consensus 170 l~--dADiVIi~a 180 (442)
++ +.|+|+++.
T Consensus 87 l~~~~vD~V~i~t 99 (444)
T 2ixa_A 87 LKDKNIDAVFVSS 99 (444)
T ss_dssp TTCTTCCEEEECC
T ss_pred hcCCCCCEEEEcC
Confidence 65 589999973
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.59 Score=44.81 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc--CCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal--~dA 173 (442)
..++.|+|| |++|..++..|+..|.. .|.+ .+++.++++..+.++.. . .+... .++++ .++
T Consensus 120 ~k~~lvlGa-Gg~~~aia~~L~~~G~~----~v~i----~~R~~~~a~~la~~~~~--~----~~~~~--~~~~l~~~~~ 182 (272)
T 3pwz_A 120 NRRVLLLGA-GGAVRGALLPFLQAGPS----ELVI----ANRDMAKALALRNELDH--S----RLRIS--RYEALEGQSF 182 (272)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTCCS----EEEE----ECSCHHHHHHHHHHHCC--T----TEEEE--CSGGGTTCCC
T ss_pred CCEEEEECc-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhcc--C----CeeEe--eHHHhcccCC
Confidence 468999996 99999999999997752 3555 36777888877777653 1 23322 12233 789
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+||.+-.
T Consensus 183 DivInaTp 190 (272)
T 3pwz_A 183 DIVVNATS 190 (272)
T ss_dssp SEEEECSS
T ss_pred CEEEECCC
Confidence 99998643
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.84 E-value=1.3 Score=41.14 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=33.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+++.|+||+|+||.+++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~ 50 (260)
T 2qq5_A 6 QVCVVTGASRGIGRGIALQLCKAGA-----TVYIT----GRHLDTLRVVAQEAQ 50 (260)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 5789999999999999999999874 25442 455566665555554
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.19 Score=46.88 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||.+++..|+..|.
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~ 32 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGA 32 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999999874
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.68 Score=47.42 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+|+|+ |.||..++..|...|. .|.. + |++..++. .+... . ... .+..+++++||+
T Consensus 220 GktV~ViG~-G~IGk~vA~~Lra~Ga-----~Viv--~--D~dp~ra~-~A~~~-----G----~~v-~~Leeal~~ADI 278 (435)
T 3gvp_A 220 GKQVVVCGY-GEVGKGCCAALKAMGS-----IVYV--T--EIDPICAL-QACMD-----G----FRL-VKLNEVIRQVDI 278 (435)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHH-HHHHT-----T----CEE-CCHHHHTTTCSE
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCC-----EEEE--E--eCChhhhH-HHHHc-----C----CEe-ccHHHHHhcCCE
Confidence 469999995 9999999999998664 2444 2 33333322 11111 1 111 245789999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|+.+.|. +++-.. + .+... .++++|++++.+-
T Consensus 279 Vi~atgt---~~lI~~-----------e---~l~~M-K~gailINvgrg~ 310 (435)
T 3gvp_A 279 VITCTGN---KNVVTR-----------E---HLDRM-KNSCIVCNMGHSN 310 (435)
T ss_dssp EEECSSC---SCSBCH-----------H---HHHHS-CTTEEEEECSSTT
T ss_pred EEECCCC---cccCCH-----------H---HHHhc-CCCcEEEEecCCC
Confidence 9997442 222111 1 12232 4789999999763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 442 | ||||
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 4e-68 | |
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 3e-64 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 2e-43 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 4e-43 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 1e-41 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 2e-39 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 4e-31 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 1e-22 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 1e-22 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 2e-22 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 4e-22 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 7e-22 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 1e-21 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 1e-21 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 6e-21 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 2e-19 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 4e-19 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 5e-19 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 7e-19 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 1e-18 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 3e-18 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 5e-18 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 1e-17 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 1e-17 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 2e-17 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 8e-17 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 2e-16 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 4e-16 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 1e-15 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 2e-15 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 4e-11 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 4e-11 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 1e-10 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 1e-10 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 2e-10 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 1e-09 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 5e-08 | |
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 5e-08 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 7e-08 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 4e-06 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 2e-04 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 8e-04 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 0.004 |
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 212 bits (541), Expect = 4e-68
Identities = 154/175 (88%), Positives = 167/175 (95%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 60
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 61 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 120
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHAL
Sbjct: 121 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 202 bits (516), Expect = 3e-64
Identities = 159/191 (83%), Positives = 172/191 (90%), Gaps = 3/191 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
TRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWL
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
EE FT T+QK RGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GN
Sbjct: 61 EEEFTITVQK---RGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGN 117
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGI 427
PYGIAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K+E ELLAEKKCVAHLTGEG
Sbjct: 118 PYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGEGN 177
Query: 428 AFCDLPEDTML 438
A+CD+PEDTML
Sbjct: 178 AYCDVPEDTML 188
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 147 bits (372), Expect = 2e-43
Identities = 87/153 (56%), Positives = 113/153 (73%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA 246
++VKV+VVGNP NTNALI KNAP + +NF A
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 147 bits (372), Expect = 4e-43
Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 2/176 (1%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-HKW 306
TRLD NRAK Q+ALK GV D V N+ IWGNHS+TQ PD +A++ + + + K
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60
Query: 307 LEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 366
E I V+ RG +IK SSA S A +I D ++ + TPEG++ S G+ ++G
Sbjct: 61 DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120
Query: 367 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
N YG+ +D+++S P D +++V+ + +D+ R+++ T +EL EK+
Sbjct: 121 NSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAFEF 175
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 142 bits (360), Expect = 1e-41
Identities = 73/151 (48%), Positives = 94/151 (62%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHAL 247
KVIVVGNP NTN L K+APSIP +NF L
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCL 154
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 137 bits (346), Expect = 2e-39
Identities = 73/176 (41%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Query: 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW 306
+TRLD NRAK QLA K G D++ MT+WGNHS+T PD +A ++G P E++ +
Sbjct: 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWY 60
Query: 307 LEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 366
I V RG +I+ G SSAAS A + ++ ++ TPEGDW S V + G
Sbjct: 61 ----EKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG 116
Query: 367 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
YGI E IV+S P +K DG Y +V+ + +++ RKR+ T QELL E + V L
Sbjct: 117 -EYGIPEGIVYSFPVTAK-DGAYRVVEGLEINEFARKRMEITAQELLDEMEQVKAL 170
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 115 bits (288), Expect = 4e-31
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE 308
RLD NRA Q+A K G + + +WGNHS T D+ A+I+G VK++I D W
Sbjct: 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAW-- 59
Query: 309 EGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 368
+ V RG +I G SSAAS A + +D + V T
Sbjct: 60 -NRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD--GS 116
Query: 369 YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG 424
YGI E ++F P + +G+Y++V+ + D + ++RI T ELL E+ V HL G
Sbjct: 117 YGIPEGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINVTLNELLEEQNGVQHLLG 171
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 92.1 bits (228), Expect = 1e-22
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD RA +A G+ +VS I G+ T +P ++ +
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLS----- 56
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+++ G ++K + +A+ +++ A +
Sbjct: 57 -----TLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVK 111
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412
+ FS P G + + + K IA+ EL
Sbjct: 112 SQET-DCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPEL 155
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 91.8 bits (227), Expect = 1e-22
Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 7/170 (4%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + + + GV + G H + + + + + + +K
Sbjct: 3 CNLDSARFRYLMGERLGVHSCSCHGW-VIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDK 61
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ + + V +
Sbjct: 62 ---QDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE-TIMKNLCRVHPVSTMVKD- 116
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
YGI +++ S+PC G + + +++ K+ L +K
Sbjct: 117 FYGIKDNVFLSLPCVLNDHG-ISNIVKMKLKPNEEQQLQKSATTLWDIQK 165
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 91.3 bits (226), Expect = 2e-22
Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R+ +A G +V I G+ T +P +E+
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVA------ 55
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ ++++ G +++ +A+ ++ A L
Sbjct: 56 -----DLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVE 110
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412
G FS P +G E + + + L
Sbjct: 111 GDGQ-YARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 154
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 90.7 bits (224), Expect = 4e-22
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 5/173 (2%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A V V + G H VP +NG P+++ IKD E+
Sbjct: 4 LDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62
Query: 310 GFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 369
E + ++ GG +++ G+ SA + AM + + S Y
Sbjct: 63 QLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCN--GEY 120
Query: 370 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
G+ +D+ +P G G E V ++ ++ +K+ K+ +++A K VA L
Sbjct: 121 GL-KDMFIGLPAVIGGAG-IERVIELELNEEEKKQFQKSVDDVMALNKAVAAL 171
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 89.3 bits (221), Expect = 7e-22
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 16/156 (10%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GAAG I L L G + L L GVA++L +
Sbjct: 3 VAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIA---PVTPGVAVDLSHIPTAVKI 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
+ G + E A+ L+ R PGM+R+ L ++N I + + A +
Sbjct: 56 KGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQV-AKTCPKACI 114
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
++ NP NT I A+ D+N+
Sbjct: 115 GIITNPVNTTVAIA--------AEVLKKAGVYDKNK 142
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.5 bits (221), Expect = 1e-21
Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 4/170 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + + K GV + G H + VP + + G+ +K +
Sbjct: 3 CNLDSARFRYLIGEKLGVNPTSCHGW-VLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTD 61
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ + + S A+ + + G
Sbjct: 62 KNKQ-HWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKG- 119
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
+GI E++ S+PC G V + K+ L +K
Sbjct: 120 FHGIKEEVFLSIPCVLGESG-ITDFVKVNMTAEEEGLLKKSADTLWNMQK 168
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 89.5 bits (221), Expect = 1e-21
Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 11/177 (6%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII--KDHK 305
T LD R + +A + GV V I G H ++VP + +A I G+P+ + H
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNVHAY-IAGEHGDSEVPLWESATIGGVPMSDWTPLPGHD 59
Query: 306 WLEEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTN 365
L+ E I + I ++ + +S VD +++++ V +
Sbjct: 60 PLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLH----DTNRILPVSSM 115
Query: 366 GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ DI S+P G + D + ++ + L K+ A
Sbjct: 116 LKDFHGISDICMSVPTLLNRQG-VNNTINTPVSDKELAALKRSAETL---KETAAQF 168
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 6e-21
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 4/170 (2%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
LD R + +A K G+ I G H + V + + G+ ++E+ +
Sbjct: 3 CNLDSARFRYLMAEKLGIHPSSCHGW-ILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTD 61
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ + + + A+ + A G
Sbjct: 62 NDSENWKEVHKMVVES-AYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKG- 119
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
YGI ++ S+PC G V + D ++ K+ L +K
Sbjct: 120 MYGIENEVFLSLPCILNARG-LTSVINQKLKDDEVAQLKKSADTLWDIQK 168
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 83.0 bits (204), Expect = 2e-19
Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 9/178 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A G V + G H ++VP + A I G+P++ + + +
Sbjct: 2 TVLDTARLRTLIAQHCGFSPRSVHVY-VIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKC 60
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ E + R I + ++ + A+++ D ++S+ E + VY
Sbjct: 61 DSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIF--FDEKRVLTLSVYLED- 117
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE 425
Y +D+ S+P G E + ++ ++ + K+ L K + +T E
Sbjct: 118 -YLGVKDLCISVPVTLGKHG-VERILELNLNEEELEAFRKSASIL---KNAINEITAE 170
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 82.0 bits (202), Expect = 4e-19
Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 10/163 (6%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++ GV ++ + G H VP + G+P+ +++
Sbjct: 4 LDAARFRSFIAMELGVSMQDINAC-VLGGHGDAMVPVVKYTTVAGIPISDLLPAETI--- 59
Query: 310 GFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 369
+ +++ R G +++ + S A A + V G Y
Sbjct: 60 --DKLVERTRNGGAEIVEHLKQGS-AFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQ-Y 115
Query: 370 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412
GI + +P + +G ++ ++ D + K+ + +
Sbjct: 116 GI-DKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQKSAKIV 156
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 81.8 bits (201), Expect = 5e-19
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 6/165 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + L V V I G H T++P + A I +P++++++
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNVHAY-IIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE 59
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ E I I + ++ A+ + ++++ + V +
Sbjct: 60 AQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHN----ENAILTVSAYLD 115
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412
D+ +P +G V ++ +D + R + L
Sbjct: 116 GLYGERDVYIGVPAVINRNG-IREVIEIELNDDEKNRFHHSAATL 159
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 81.4 bits (200), Expect = 7e-19
Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 9/175 (5%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R K +A GV D+V I G H + VP I G+P+++ + +
Sbjct: 3 THLDSLRFKVAIAKFFGVHIDEVRTR-IIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+ E ++ G I + S A +I++ ++ E + Y +G
Sbjct: 62 IDEIIEDVK----TKGEQIIRLKGGSEFGPAAAILNVVRC--IVNNEKRLLTLSAYVDGE 115
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
GI D+ +P + DG E V + D K+ + + + V +L
Sbjct: 116 FDGI-RDVCIGVPVKIGRDG-IEEVVSIELDKDEIIAFRKSAEIIKKYCEEVKNL 168
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 80.7 bits (198), Expect = 1e-18
Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 7/167 (4%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD +R K ++ K V V+ I G H V + G+P++E I + +
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAH-IVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61
Query: 310 GFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPY 369
+ ++ A A I A L G
Sbjct: 62 ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYL---KDLKKVLICSTLLEG--Q 116
Query: 370 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 416
DI P +G +++ ++ + + + + E K
Sbjct: 117 YGHSDIFGGTPVVLGANGVEQVI-ELQLNSEEKAKFDEAIAETKRMK 162
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 78.9 bits (194), Expect = 3e-18
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 19/157 (12%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA+G I L L ++ L L + GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLKNSPLVS-----RLTLYD----IAHTPGVAADLSHIETRATV 53
Query: 159 EVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ +G + + + ++ PR PGM R L + N I A A A +
Sbjct: 54 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCPDAM 112
Query: 218 VIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254
+ ++ NP N+ I A+ F + N+
Sbjct: 113 ICIISNPVNSTIPIT--------AEVFKKHGVYNPNK 141
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 79.1 bits (194), Expect = 5e-18
Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 8/176 (4%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD +R + L + V V I G H ++ + A I PV+++ K+
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSVDAY-IMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVS 59
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
++ + VR + +I G + +++ K+ E G Y +G
Sbjct: 60 DDDLAKLEDGVRNKAYDIINLKGATFYG-IGTALMRISKA--ILRDENAVLPVGAYMDG- 115
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAE-KKCVAHL 422
YG+ DI P G G + + + K++ + L +A L
Sbjct: 116 QYGL-NDIYIGTPAIIGGTG-LKQIIESPLSADELKKMQDSAATLKKVLNDGLAEL 169
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 78.3 bits (192), Expect = 1e-17
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + +A V V I G H T+ P + +A I G+ + E +K H +
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSVHAY-IMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI 59
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
+E + + I K ++ A ++ K+++ E VY +G
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAIL--NDENAVLPLSVYMDG- 116
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412
YGI D+ P +G + ++ D+ + + K+ +L
Sbjct: 117 QYGI-NDLYIGTPAVINRNGIQN-ILEIPLTDHEEESMQKSASQL 159
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 78.0 bits (191), Expect = 1e-17
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 7/166 (4%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + L+ K GV V I G H +Q+P + I G + E I D K
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNVHGY-IIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCN 59
Query: 308 EEGFTET-IQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNG 366
+ I + G I K ++ AVSI +++ + + G NG
Sbjct: 60 FTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVET--LLKNQNTIRTVGTVING 117
Query: 367 NPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 412
YGI ED+ S+P +G + V + + + +++
Sbjct: 118 M-YGI-EDVAISLPSIVNSEG-VQEVLQFNLTPEEEEALRFSAEQV 160
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.7 bits (188), Expect = 2e-17
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ + GA+G + + LA + L L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKD-----LVLIGREHSINKLEGLREDIYDALAGTRS 57
Query: 159 EVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
+ I + ++++ ++ PR GM R L N +I + K + + +
Sbjct: 58 DANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--D 115
Query: 216 VKVIVVGNPCNTNALICLK 234
K+ V+ NP + L
Sbjct: 116 TKIFVITNPVDVMTYKALV 134
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 75.5 bits (185), Expect = 8e-17
Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 12/169 (7%)
Query: 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
LD R + +A++AGV V M + G H VP + I+G+PV E I +
Sbjct: 4 LDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFIAPDRL--- 59
Query: 310 GFTETIQKVRLRGGLLIK-KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 368
+ +++ R GG ++ S+ + A + +++++ + Y G
Sbjct: 60 --AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVL--KDKKRVMPVAAYLTGQ- 114
Query: 369 YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKK 417
YG+ DI F +P G + + ++ ++ + + + + A
Sbjct: 115 YGL-NDIYFGVPVILGAGGVEK-ILELPLNEEEMALLNASAKAVRATLD 161
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 74.5 bits (182), Expect = 2e-16
Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 14/175 (8%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
T LD R + + + VS G H +Q + R+ G P+ +
Sbjct: 2 TLLDTARMQRAVGEAFDLDPRSVSGY-NLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID 60
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
E +K GG + ++ A S + K+ + +
Sbjct: 61 LAAIEEEARK----GGFTVLNGKGYTSYGVATSAIRIAKA--------VMADAHAELVVS 108
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 422
+ S P DG + ++++ ++ + +
Sbjct: 109 NRRDDMGMYLSYPAIIGRDG-VLAETTLDLTTDEQEKLLQSRDYIQQRFDEIVDT 162
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 72.8 bits (178), Expect = 4e-16
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I V GA G + F+LA + +A +L+ + +G A+++ +S L
Sbjct: 3 ITVIGA-GNVGATTAFRLAE-------KQLARELVLLDVVEGIPQGKALDMYESGPVGLF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+ K+ G N Y +++ ++ PR PGM R LL N I E + S+N
Sbjct: 55 DTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNI-MKHSKNPI 113
Query: 218 VIVVGNPCNTNALICLKNA 236
+IVV NP + + +
Sbjct: 114 IIVVSNPLDIMTHVAWVRS 132
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 72.2 bits (176), Expect = 1e-15
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 14/173 (8%)
Query: 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL 307
RLD R + L+ + V I G H QVP F ++G + + + L
Sbjct: 3 GRLDSARFRYVLSEEFDAPVQNVEGT-ILGEHGDAQVPVFSKVSVDGTDPEFSGDEKEQL 61
Query: 308 EEGFTETIQKVRLRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGN 367
E+ + + ++ A + +++++ T E
Sbjct: 62 LGDLQESAMD--------VIERKGATEWGPARGVAHMVEAILHDTGEVLP----ASVKLE 109
Query: 368 PYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVA 420
ED F +P +G E + + DDY + +A ++L + ++
Sbjct: 110 GEFGHEDTAFGVPVSLGSNG-VEEIVEWDLDDYEQDLMADAAEKLSDQYDKIS 161
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 71.2 bits (174), Expect = 2e-15
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
++V GAAG + + +A ++ + + G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIAD-----EVVFVDIPDKEDDTVGQAADTNHGI-AYDS 56
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ YE ++ ++ PR PG R L N I + +L+ +
Sbjct: 57 NTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYIS 115
Query: 219 IVVGNPCNTNALICLK 234
+ NP + +
Sbjct: 116 LTTSNPVDLLNRHLYE 131
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.5 bits (141), Expect = 4e-11
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ GA G + + F ++ + + G AM+L + + +
Sbjct: 3 LGFVGA-GRVGSTSAFTCLL-------NLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDK 54
Query: 159 EVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
K +G Y L + +E ++ R PGM R L N I + K + + K
Sbjct: 55 YPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKI-VENAPESK 113
Query: 218 VIVVGNPCNTNALICLK 234
++VV NP + I K
Sbjct: 114 ILVVTNPMDVMTYIMWK 130
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 58.6 bits (141), Expect = 4e-11
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 13/140 (9%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + L A Q +A + + + ++ ++ +D++ L
Sbjct: 4 IGIIGL-GNVGAAVAHGLIA-------QGVADDYVFIDANEAKVKADQIDFQDAMANLEA 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRG----PGMERAGLLDINGQIFAEQGKALNAVASR 214
I IN + DA+ + + P +R L + G +
Sbjct: 56 HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTN-LKESGF 114
Query: 215 NVKVIVVGNPCNTNALICLK 234
+ ++V+ NP + +
Sbjct: 115 HGVLVVISNPVDVITALFQH 134
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 57.0 bits (137), Expect = 1e-10
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I + G G + + F L + A +++ + + EG A++L P R
Sbjct: 3 IGIVGL-GRVGSSTAFALLM-------KGFAREMVLIDVDKKRAEGDALDLIHGT-PFTR 53
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
I Y + ++ ++ P+ PG R LL N ++ E + ++ A + V
Sbjct: 54 RANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIV 112
Query: 219 IVVGNPCNTNALICLKNA 236
IVV NP + LK +
Sbjct: 113 IVVTNPVDVLTYFFLKES 130
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 56.9 bits (137), Expect = 1e-10
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV GA G + + L F A + IA +++ + + + +E ++++
Sbjct: 4 LAVIGA-GAVGSTLAFAAAQ-------RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPT 55
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
G + E+ DA+ ++ + PG R L+ I L VA N
Sbjct: 56 VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP-NAIY 114
Query: 219 IVVGNPCNTNALICLK 234
+++ NP + + K
Sbjct: 115 MLITNPVDIATHVAQK 130
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 56.6 bits (136), Expect = 2e-10
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+ V GA G + +F L Q IA +++ + + G AM+ +
Sbjct: 9 VVVIGA-GFVGASYVFALMN-------QGIADEIVLIDANESKAIGDAMDFNHGKVFAPK 60
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I Y+ DA+ ++ + PG R L+D N IF +++ +
Sbjct: 61 PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESV-MASGFQGLF 119
Query: 219 IVVGNPCNTNALICLK 234
+V NP + K
Sbjct: 120 LVATNPVDILTYATWK 135
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 54.7 bits (131), Expect = 1e-09
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 12/148 (8%)
Query: 87 EEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA 146
EE T K I V G G + + + +A +L + L+G
Sbjct: 14 EEATVPNNK---ITVVGV-GQVGMACAISILG-------KSLADELALVDVLEDKLKGEM 62
Query: 147 MELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGK 206
M+L+ L + Y + +++ ++ + G R L+ N +F
Sbjct: 63 MDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIP 122
Query: 207 ALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + +IVV NP + + K
Sbjct: 123 QI-VKYSPDCIIIVVSNPVDILTYVTWK 149
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 49.6 bits (118), Expect = 5e-08
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151
S + + G G + + F +A Q IA + + + +G A++LED
Sbjct: 1 SMPNHQKVVLVGD-GAVGSSYAFAMAQ-------QGIAEEFVIVDVVKDRTKGDALDLED 52
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ KI Y +DA+ ++ P+ PG R L++ N I + K +
Sbjct: 53 AQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS 111
Query: 212 ASRNVKVIVVGNPCNTNALICLK 234
+ +V NP + K
Sbjct: 112 GF-DGIFLVAANPVDILTYATWK 133
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.0 bits (119), Expect = 5e-08
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 12/149 (8%)
Query: 86 AEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145
E+ S K I V G G + + G +AL + L G
Sbjct: 12 VPEDKLSRCK---ITVVGV-GDVGMACAISILLK---GLADELALV----DADTDKLRGE 60
Query: 146 AMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
A++L+ L + Y + +++ ++ G R LL N I
Sbjct: 61 ALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIV 120
Query: 206 KALNAVASRNVKVIVVGNPCNTNALICLK 234
+ S + K+IVV NP + + K
Sbjct: 121 PGV-IQNSPDCKIIVVTNPVDILTYVVWK 148
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 49.3 bits (117), Expect = 7e-08
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
I++ GA G + + LAA + + ++ + +G A++L ++
Sbjct: 4 ISIIGA-GFVGSTTAHWLAA-------KELG-DIVLLDIVEGVPQGKALDLYEASPIEGF 54
Query: 159 EVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVK 217
+V++ G N Y +++ ++ PR PGM R L+ +N I A S N
Sbjct: 55 DVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQA-APLSPNAV 113
Query: 218 VIVVGNPCNTNALICLK 234
+I+V NP + + +
Sbjct: 114 IIMVNNPLDAMTYLAAE 130
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 43.8 bits (103), Expect = 4e-06
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+A+ GA G + F +A + A +L+ + + G AM++ L P +
Sbjct: 4 VAIIGA-GFVGASAAFTMAL-------RQTANELVLIDVFKEKAIGEAMDINHGL-PFMG 54
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
++ + Y +D + ++ R PG R L N I E + + +
Sbjct: 55 QMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQN-IMKYYNHGVI 113
Query: 219 IVVGNPCNTNALICLK 234
+VV NP + + K
Sbjct: 114 LVVSNPVDIITYMIQK 129
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
++ +A+ G+ GMI + + A E+ + L + + + + + S+
Sbjct: 5 QRRKKVAMIGS-GMIGGTMGYLCALREL------ADVVLYDVVKGMPEGKALDLSHVTSV 57
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKAL 208
V+ + A+ ++ + PG R LL N +I E G+ +
Sbjct: 58 VDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 117
Query: 209 NAVASRNVKVIVVGNPCNTNALICLK 234
+IVV NP + + +
Sbjct: 118 KKY-CPKTFIIVVTNPLDCMVKVMCE 142
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 37.7 bits (87), Expect = 8e-04
Identities = 20/167 (11%), Positives = 47/167 (28%), Gaps = 25/167 (14%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
KK +I ++G ++ L P + + L ER + +A + +
Sbjct: 1 KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER----QDRIAGACDVFI 56
Query: 154 --FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
E +P E F D ++ + + + + + ++ +
Sbjct: 57 REKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116
Query: 212 ASR-------------------NVKVIVVGNPCNTNALICLKNAPSI 239
A + ++ NP A + P+
Sbjct: 117 AYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 23/159 (14%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
IAV G L+ L + + E+ + + ++ L
Sbjct: 3 IAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-----QKIVVDFVKRLVKDRF 57
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDIN----GQIFAEQGKALNAVASR 214
+V I DA++ + G E + + GQ G A+ +
Sbjct: 58 KVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAF 117
Query: 215 NV--------------KVIVVGNPCNTNALICLKNAPSI 239
+ ++ NP
Sbjct: 118 PIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYLEYE 156
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 100.0 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 100.0 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 100.0 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 100.0 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 100.0 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 100.0 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 100.0 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 100.0 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 100.0 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 100.0 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 100.0 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.98 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.98 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.98 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.97 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.97 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 99.97 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.97 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.97 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 99.97 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.97 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.97 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.96 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.96 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.95 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.94 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.89 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.88 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.86 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.86 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.25 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.88 | |
| d1s6ya2 | 270 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.74 | |
| d1u8xx2 | 276 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.66 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.48 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.41 | |
| d1obba2 | 308 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.38 | |
| d1vjta2 | 278 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.28 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.22 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.16 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.02 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.97 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.79 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.76 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.68 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.66 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.51 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.51 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.27 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.24 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.22 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.17 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.87 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.78 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.72 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.69 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 96.6 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.57 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.51 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 96.51 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.51 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 96.47 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.42 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.4 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 96.35 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 96.33 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.32 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.25 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.21 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.19 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.13 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 96.08 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.06 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.91 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 95.89 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.85 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.83 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.8 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.8 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 95.78 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.75 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 95.69 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.62 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.57 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 95.53 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.51 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.5 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 95.5 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.49 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.48 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.47 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.46 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.32 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.28 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.28 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.26 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 95.26 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.23 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.23 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 95.2 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.18 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.15 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 95.07 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.07 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 95.07 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.03 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.01 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 94.96 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.89 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.86 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 94.8 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.79 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.65 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 94.6 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 94.56 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.52 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.41 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.23 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.18 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.17 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.15 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.12 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.92 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.91 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.91 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.83 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.81 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.79 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 93.78 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.76 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.69 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.67 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.61 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.49 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.49 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 93.42 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 93.38 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 93.3 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 93.14 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.07 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.97 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 92.92 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 92.75 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 92.68 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 92.67 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 92.66 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.56 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.53 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 92.5 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.49 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.11 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.09 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 91.86 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 91.68 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 91.64 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 91.56 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.55 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 91.49 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 91.48 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.47 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 91.47 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 91.44 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 91.42 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 91.38 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.36 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 91.33 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.2 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.98 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 90.95 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 90.94 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 90.94 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 90.85 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 90.81 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.8 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 90.74 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 90.5 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.27 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 90.22 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 89.79 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.54 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 89.5 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 89.37 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 88.89 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 88.83 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 88.83 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 88.67 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 88.57 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.43 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 88.35 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.62 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 87.55 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.55 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.51 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 87.41 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.1 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 86.99 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.98 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 86.77 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.36 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 86.16 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 86.07 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 86.05 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 85.88 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 85.32 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 85.1 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 84.98 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 84.77 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 84.52 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 84.46 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 84.02 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 84.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 83.88 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 83.49 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 83.47 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 83.22 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 83.15 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.91 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 82.08 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 81.25 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 81.09 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 80.98 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 80.58 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 80.58 |
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=2.4e-44 Score=331.82 Aligned_cols=188 Identities=82% Similarity=1.295 Sum_probs=174.6
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~ 327 (442)
|+||++||+++||+++|++|++|++++||||||++|||+||+++|+|+|+.+++.+..|..++ +.+.++++++++++
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~~~~~~~~---~~~~v~~~~~~ii~ 77 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEE---FTITVQKRGGALIQ 77 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHHHHHHH---HHHHHHTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccchhhhHHH---HHHHHhhhHHHHHH
Confidence 789999999999999999999999878999999999999999999999999988765554444 44556669999999
Q ss_pred hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHH
Q 013466 328 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 407 (442)
Q Consensus 328 ~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~ 407 (442)
.+|+++++++|.++++++.+|+.+.++..+++++|+++|+.||+++|+|||+||++|++|+++++.+++|+++|+++|++
T Consensus 78 ~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~~ 157 (188)
T d7mdha2 78 KWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKK 157 (188)
T ss_dssp HTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHHH
T ss_pred hhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999998888889999999999956999999999999999999999998789999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCccccCCCCCCC
Q 013466 408 TEQELLAEKKCVAHLTGEGIAFCDLPEDTML 438 (442)
Q Consensus 408 sa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (442)
|+++|+++++++.+|+|+.+.+|++|+||||
T Consensus 158 S~~eL~~e~~~v~~Llg~~~~~~~~~~~~~~ 188 (188)
T d7mdha2 158 SEAELLAEKKCVAHLTGEGNAYCDVPEDTML 188 (188)
T ss_dssp HHHHHHHHHHHTHHHHTSSSCCCCCCSTTCC
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCccccC
Confidence 9999999999999999999999999999997
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=100.00 E-value=2e-40 Score=302.27 Aligned_cols=173 Identities=88% Similarity=1.395 Sum_probs=153.2
Q ss_pred CcceeeEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc
Q 013466 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (442)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~ 152 (442)
|||||||.+|++..+.+.++++++.||+|+||+|+||+++++.|+++++|+.++++.|+|+|++.+.+.++|++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~ 80 (175)
T d7mdha1 1 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 80 (175)
T ss_dssp CCCGGGCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT
T ss_pred CceEeeecccccccchhhhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc
Confidence 79999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred cCCCcccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHH
Q 013466 153 LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (442)
Q Consensus 153 ~~~~~~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~ 232 (442)
.+++...+.++++++++++|||+||+++|.||+|||+|.|++.+|++|+++++++|+++|.++++|+++|||+|++|+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia 160 (175)
T d7mdha1 81 LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC 160 (175)
T ss_dssp TCTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH
T ss_pred ccccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH
Confidence 88777888889999999999999999999999999999999999999999999999999855999999999999999999
Q ss_pred HHHCCCCCcceee
Q 013466 233 LKNAPSIPAKNFH 245 (442)
Q Consensus 233 ~k~s~~~p~kvig 245 (442)
+++++++|+++|.
T Consensus 161 ~k~a~~ip~~~i~ 173 (175)
T d7mdha1 161 LKNAPDIPAKNFH 173 (175)
T ss_dssp HHTCTTSCGGGEE
T ss_pred HHHCCCCCHHHEe
Confidence 9998899986654
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=7.7e-36 Score=272.77 Aligned_cols=176 Identities=36% Similarity=0.493 Sum_probs=156.2
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc-CChHHHHHHHHHHhhhhHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~-~~~~e~~~~~~~v~~~g~eii 326 (442)
|+||++||+++||+++|++|++|++.+|||+||+++||+||+++|+|+|+.+++.+.. .+.....++.++++.++++++
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 80 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVI 80 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhhh
Confidence 7899999999999999999999998777899999999999999999999887665432 222334456666777999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+.+|+++++++|.++++++.+|+...++..+++++|+++|.+||+|+++|||+||++|++|++++. +++|+++|+++|+
T Consensus 81 ~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~-~l~L~~~E~~~l~ 159 (179)
T d5mdha2 81 KARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE-GLPINDFSREKMD 159 (179)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECC-CCCCCHHHHHHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEe-CCCCCHHHHHHHH
Confidence 988888888899999999999998778889999999999867999999999999999999999988 6899999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 013466 407 KTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 407 ~sa~~l~~~~~~~~~~~~ 424 (442)
+|+++|+++++++..|+.
T Consensus 160 ~Sa~~L~~~~~~~~~~l~ 177 (179)
T d5mdha2 160 LTAKELAEEKETAFEFLS 177 (179)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998875
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-33 Score=256.55 Aligned_cols=170 Identities=41% Similarity=0.661 Sum_probs=145.2
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii 326 (442)
.|.||++||+++||+++|++|++|++++||||||++++|+||+++++|.|+.+++.+..+..+ .+++...++++++
T Consensus 1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 76 (173)
T d1y7ta2 1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKV----FIPTVAQRGAAII 76 (173)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCHHHHHHT----HHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhcccccccch----hhhhhhhhHHHHH
Confidence 489999999999999999999999986788999999999999999999999988765433222 2333344667777
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..++.+++.++|.++++++.+++.++|+++++|++++++| +||+|+++|||+||+++++|+ +++++++|+++|+++|+
T Consensus 77 ~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g-~YGi~~~~~~s~Pvi~~~gg~-~~v~~l~L~~~E~~~l~ 154 (173)
T d1y7ta2 77 QARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAKDGAY-RVVEGLEINEFARKRME 154 (173)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSS-GGGCCTTSEEEEEEEEETTEE-EECCCCCCCHHHHHHHH
T ss_pred HHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEecc-ccCCccceeEeeeEEEeCCeE-EEecCCCCCHHHHHHHH
Confidence 6666677778899999999999987789999999999999 799999999999998776555 55557999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013466 407 KTEQELLAEKKCVAHL 422 (442)
Q Consensus 407 ~sa~~l~~~~~~~~~~ 422 (442)
+|+++|+++++.+.+|
T Consensus 155 ~s~~~L~~~~e~vk~l 170 (173)
T d1y7ta2 155 ITAQELLDEMEQVKAL 170 (173)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998876
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=100.00 E-value=1.4e-33 Score=255.35 Aligned_cols=167 Identities=20% Similarity=0.276 Sum_probs=146.0
Q ss_pred ccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCC--hHHHHHHHHHHhhhhH
Q 013466 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL--EEGFTETIQKVRLRGG 323 (442)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~--~~e~~~~~~~v~~~g~ 323 (442)
+||.||++||+++||+++|+++++|+ ++||||||++|||+||+++|+|.|+.+++.+..+. .+.+.++.++++.++.
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~-~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCH-GWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCB-CCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHce-EEEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceE
Confidence 58999999999999999999999997 59999999999999999999999999987665432 3445666777777999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 324 LLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 324 eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
++++.++.+.+ ++|.++++.+..++ .+++.++|++++++| +||+++++|||+||++|++|+++++ +++|+++|++
T Consensus 80 ~~~~~~~~s~~-a~a~~~~~~~~~~~--~~~~~v~~~~~~~~g-~YGi~~~i~~s~Pv~lg~~Gv~~v~-~l~L~~~E~~ 154 (172)
T d1i0za2 80 EVIKLKGYTNW-AIGLSVADLIESML--KNLSRIHPVSTMVKG-MYGIENEVFLSLPCILNARGLTSVI-NQKLKDDEVA 154 (172)
T ss_dssp HHHHHHSSCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEEEEEC-CCCCCHHHHH
T ss_pred Eeeecccccch-HHHHHHHHHHHHHh--cCCCcccccceeccC-cCCCcCCEEEEEEEEecCCcEEEEe-CCCCCHHHHH
Confidence 99999987775 46677777777766 578899999999999 7999999999999999999999998 6899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013466 404 RIAKTEQELLAEKKC 418 (442)
Q Consensus 404 ~L~~sa~~l~~~~~~ 418 (442)
+|++|++.|++.++.
T Consensus 155 ~l~~Sa~~l~~~~~~ 169 (172)
T d1i0za2 155 QLKKSADTLWDIQKD 169 (172)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999886653
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=100.00 E-value=1e-33 Score=256.22 Aligned_cols=170 Identities=36% Similarity=0.613 Sum_probs=147.1
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
.||++||+++||+++|++|++|++++||||||++++|+||+++++|.++.++..+..+..+++.+. .+.++..++..
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 78 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPT---VGKRGAAIIDA 78 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHH---HHTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhhhcchhhhHHHH---HHHHHHHHHHH
Confidence 599999999999999999999998888999999999999999999999999886654444444333 33467777777
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
++.+++.+.+.+++..+..|+.+ +++.+++++++++| +||+|+++|||+||++|++|++.+. +++|+++|+++|++|
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~i~~-~~~~~~~~s~~~~g-~yg~~~gi~fS~Pv~ig~~gve~v~-~l~L~~~e~~~l~~s 155 (171)
T d1b8pa2 79 RGVSSAASAANAAIDHIHDWVLG-TAGKWTTMGIPSDG-SYGIPEGVIFGFPVTTENGEYKIVQ-GLSIDAFSQERINVT 155 (171)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECCS-GGGCCTTCEEEEEEEEETTEEEECC-CCCCCHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHhC-CCccceeEEEEecc-ccccccceEEEEEEEEeCCeEEEEe-CCCCCHHHHHHHHHH
Confidence 88888766677777777666654 77889999999999 7999999999999999999998877 689999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 013466 409 EQELLAEKKCVAHLTG 424 (442)
Q Consensus 409 a~~l~~~~~~~~~~~~ 424 (442)
+++|+++++.+.+|+|
T Consensus 156 ~~~L~~e~~~v~~ll~ 171 (171)
T d1b8pa2 156 LNELLEEQNGVQHLLG 171 (171)
T ss_dssp HHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999986
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=100.00 E-value=2.9e-33 Score=254.09 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=147.6
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii 326 (442)
|++||++||+++||+++|++|++|+ ++||||||++|||+||+++|+|.|+.+++.+..+...++.+.+...+.++..++
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQ-ATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIV 79 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEE-CCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcE-EEEEccCCCccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEe
Confidence 5789999999999999999999998 599999999999999999999999999988777777777777777777777776
Q ss_pred H--hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHH
Q 013466 327 K--KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404 (442)
Q Consensus 327 ~--~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~ 404 (442)
. .+|.+. +++|.++++.+..++ .|++.+++++++.+| +||++ ++|||+||++|++|+++++ +++|+++|+++
T Consensus 80 ~~~~~gst~-~~~a~a~~~~~~~i~--~~~~~~~~~s~~~~~-~yGi~-~v~~s~Pv~ig~~Gi~~v~-~l~l~~~E~~~ 153 (174)
T d1pzga2 80 RFLGQGSAY-YAPAASAVAMATSFL--NDEKRVIPCSVYCNG-EYGLK-DMFIGLPAVIGGAGIERVI-ELELNEEEKKQ 153 (174)
T ss_dssp HHHSSSCCC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGCE-EEEEEEEEEEETTEEEEEC-CCCCCHHHHHH
T ss_pred eeecccchh-hhhHHHHHHHHHhhc--ccCCceEEeeecccc-ccCCC-CceeeeeeEEcCCcEEEEe-CCCCCHHHHHH
Confidence 5 455444 446666666666666 578999999999999 89995 7999999999999999988 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013466 405 IAKTEQELLAEKKCVAHLT 423 (442)
Q Consensus 405 L~~sa~~l~~~~~~~~~~~ 423 (442)
|++|+++|+++++.+.++.
T Consensus 154 l~~s~~~l~~~~~~v~~l~ 172 (174)
T d1pzga2 154 FQKSVDDVMALNKAVAALQ 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999888753
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=100.00 E-value=5.1e-33 Score=251.61 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=151.6
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIK 327 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~ 327 (442)
|+||++||+++||+++|++|++|+. +||||||++|||+||+++++|.|+.+++.+..+..+++.++.++++.+++++++
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDA-YIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN 79 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEESSSSSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEccCCCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence 7899999999999999999999985 999999999999999999999999999887778888888888899989999999
Q ss_pred hcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHH
Q 013466 328 KWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 407 (442)
Q Consensus 328 ~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~ 407 (442)
.+|.++++ +|.++++.+..++ ++++.+++++++++| +||+ +++|||+||++|++|+++++ +++|+++|+++|++
T Consensus 80 ~k~s~~~a-~a~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~~~~S~Pv~lg~~Gv~~v~-~l~Ls~~E~~~l~~ 153 (171)
T d1ez4a2 80 LKGATFYG-IGTALMRISKAIL--RDENAVLPVGAYMDG-QYGL-NDIYIGTPAIIGGTGLKQII-ESPLSADELKKMQD 153 (171)
T ss_dssp HHSCCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHH
T ss_pred hhhhHhHH-HHHHHHHHHHHHh--ccCCceEEEEEeecc-ccCc-cceeeeEEEEEcCCcEEEEe-CCCCCHHHHHHHHH
Confidence 99887653 5666666666666 578899999999999 7998 79999999999999999999 58999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 013466 408 TEQELLAEKKCVAHLT 423 (442)
Q Consensus 408 sa~~l~~~~~~~~~~~ 423 (442)
|+++|+++++.+...+
T Consensus 154 s~~~l~~~i~~~l~~l 169 (171)
T d1ez4a2 154 SAATLKKVLNDGLAEL 169 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999987765444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.4e-33 Score=248.38 Aligned_cols=152 Identities=57% Similarity=0.903 Sum_probs=141.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
|++++||+||||+|+||+++++.|++++++++++.+.+++++.+.+.+++++.++|++|+.++....+.++.++|++++|
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 46789999999889999999999999999999889999999999999999999999999987666788899999999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCccee
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvi 244 (442)
||+||+++|.||+||++|.|++..|+++++++++.|.++|.|+++++++|||+|+||++++|+++++|+++|
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rv 152 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNF 152 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhc
Confidence 999999999999999999999999999999999999999756999999999999999999998778988544
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=1.1e-33 Score=255.72 Aligned_cols=165 Identities=26% Similarity=0.352 Sum_probs=139.0
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc--cCChHHHHHHHHHHhhhhHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~--~~~~~e~~~~~~~v~~~g~ei 325 (442)
|+||++||+++||+++|++|++|++ +||||||++|+|+||+++|+|.|+.+++.+. .++.+++.++.++++..++++
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~-~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHG-YIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI 79 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEEC-CEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceE-EEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 7899999999999999999999985 9999999999999999999999999988764 345566777777888899999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 326 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 326 i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+..+|.++|+ +|..+++.+..++ .|++.++|++++++| +||++ ++|||+||++|++|+++++ +++|+++|+++|
T Consensus 80 ~~~~~s~~~a-~a~~~~~~~~~i~--~~~~~~~~~~~~~~g-~yg~~-~i~~s~Pv~lg~~Gv~~i~-~l~Ls~~E~~~l 153 (169)
T d1y6ja2 80 IKNKGATYYG-IAVSINTIVETLL--KNQNTIRTVGTVING-MYGIE-DVAISLPSIVNSEGVQEVL-QFNLTPEEEEAL 153 (169)
T ss_dssp HHHTSCCCHH-HHHHHHHHHHHHH--HTCCCEECCEEEECS-BTTBC-SEEEECCEEEETTEEEECC-CCCCCHHHHHHH
T ss_pred hhhhhhhhhH-HHHHHHHHHHHhc--cCCCCceeeeeeecc-ccCCc-ccceeeeeEEcCCcEEEEe-cCCCCHHHHHHH
Confidence 9998888763 4555555555555 478999999999999 79995 9999999999999999998 589999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013466 406 AKTEQELLAEKKCV 419 (442)
Q Consensus 406 ~~sa~~l~~~~~~~ 419 (442)
++|+++|+++++.+
T Consensus 154 ~~s~~~lk~~~~~v 167 (169)
T d1y6ja2 154 RFSAEQVKKVLNEV 167 (169)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=5.5e-33 Score=244.38 Aligned_cols=141 Identities=15% Similarity=0.233 Sum_probs=126.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+||||+|+||+++++.|+.++++++ +.| +|++.+++.++|+++||+|+. ++..+.++++++|++++|||+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~e---l~L--~Di~~~~~~~~g~a~Dl~~~~-~~~~~~~i~~~~~~~~~~aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADE---VVF--VDIPDKEDDTVGQAADTNHGI-AYDSNTRVRQGGYEDTAGSDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSE---EEE--ECCGGGHHHHHHHHHHHHHHH-TTTCCCEEEECCGGGGTTCSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCE---EEE--EecCCcccccceeecchhhcc-cccCCceEeeCCHHHhhhcCEE
Confidence 3999999879999999999999999864 554 556667788999999999976 4555667788899999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceee
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig 245 (442)
|+++|.||+|||+|.|++..|++|+++++++|.+++ |+++++++|||+|+|+++++|.++ +|+ |+||
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvDvmt~~~~k~sg-~~~~rViG 142 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDLLNRHLYEAGD-RSREQVIG 142 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHHHHHHHHHHSS-SCGGGEEE
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHHHHHHHHHHHHC-cCcccccC
Confidence 999999999999999999999999999999999995 999999999999999999999995 666 7886
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-32 Score=248.18 Aligned_cols=168 Identities=18% Similarity=0.276 Sum_probs=148.0
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc-CChHHHHHHHHHHhhhhHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK-WLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~-~~~~e~~~~~~~v~~~g~ei 325 (442)
||+||++||+++||+++|++|++|+ ++||||||++|||+||+++++|.|+.+++.... +..+.+.++.++++.+++++
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVH-VYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEI 79 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEE-CCEEBCSSTTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeE-EEEEecCCCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeE
Confidence 7999999999999999999999998 499999999999999999999999999886543 55666777788888899999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 326 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 326 i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+..+|.+.+ ++|.++++.+..++ .+.+.+++++++.+| .||. +++|||+||++|++|+++++ +++|+++|+++|
T Consensus 80 ~~~~~~~~~-~~a~a~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~-~~v~~s~P~~lg~~Gv~~v~-~l~Ls~~E~~~l 153 (172)
T d1a5za2 80 IERKGATHY-AIALAVADIVESIF--FDEKRVLTLSVYLED-YLGV-KDLCISVPVTLGKHGVERIL-ELNLNEEELEAF 153 (172)
T ss_dssp HHHHSCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEESS-BTTB-CSEEEEEEEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred eeccccchh-hHHHHHHHHHHHHH--hhcccceeeeccccc-cccc-CCeeEeeeEEEcCCceEEEe-CCCCCHHHHHHH
Confidence 998887765 35667777777777 468899999999999 6887 69999999999999999999 589999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013466 406 AKTEQELLAEKKCVAH 421 (442)
Q Consensus 406 ~~sa~~l~~~~~~~~~ 421 (442)
++|+++|++.++.+..
T Consensus 154 ~~sa~~lk~~i~~l~~ 169 (172)
T d1a5za2 154 RKSASILKNAINEITA 169 (172)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999997777653
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=7.7e-33 Score=250.39 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=143.8
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhc---cCChHHHHHHHHHHhhhhHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH---KWLEEGFTETIQKVRLRGGL 324 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~---~~~~~e~~~~~~~v~~~g~e 324 (442)
|+||++||+++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... .+..+...++.++++.++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~ 79 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHA-YIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK 79 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence 7899999999999999999999985 8999999999999999999999999887543 24456677888888889999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHH
Q 013466 325 LIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKR 404 (442)
Q Consensus 325 ii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~ 404 (442)
|++.+|.++++ +|.++++.+.+++ .+.+.+++++++++| .||+ +++|||+||++|++|+++++ +++|+++|+++
T Consensus 80 i~~~kg~t~~~-~a~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~i~~s~P~~lg~~Gv~~i~-~l~L~~~E~~~ 153 (170)
T d1llda2 80 IINGKGATNYA-IGMSGVDIIEAVL--HDTNRILPVSSMLKD-FHGI-SDICMSVPTLLNRQGVNNTI-NTPVSDKELAA 153 (170)
T ss_dssp HHTSCCSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECSS-BTTB-CSSEEEEEEEEETTEEECCS-CCCCCHHHHHH
T ss_pred HHhhhccchhh-hHHHHHHHHHHHH--cCCCceeeeeccccC-ccCC-CCeeEeeccEEcCCeeEEEe-cCCCCHHHHHH
Confidence 99999988753 5666666676666 578899999999999 7997 79999999999999999999 68999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013466 405 IAKTEQELLAEKKC 418 (442)
Q Consensus 405 L~~sa~~l~~~~~~ 418 (442)
|++|++.|++.++.
T Consensus 154 l~~sa~~lk~~~~~ 167 (170)
T d1llda2 154 LKRSAETLKETAAQ 167 (170)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886654
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.9e-33 Score=250.45 Aligned_cols=168 Identities=24% Similarity=0.344 Sum_probs=136.4
Q ss_pred ccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
+||+||++||+++||+++|+++++|++ +||||||+++||+||+++++|+|+.++.....+..++ ..++++++++.+
T Consensus 1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 76 (168)
T d1hyea2 1 LGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDE---IIEDVKTKGEQI 76 (168)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTEEGGGCGGGGGCCHHH---HHHHHHHHTTSC
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCccccchhheeECCEecccccccchhhhhh---HHHHHhhhHHHH
Confidence 489999999999999999999999985 9999999999999999999999999887655444443 344455578888
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 326 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 326 i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+..+|.++++ +|.+.+..+..++ .+++.++++++++.| .|+.++|+|||+||++|++|+++++ +++|+++|+++|
T Consensus 77 ~~~k~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~v~~s~Pv~lg~~Gv~~i~-~l~Ls~~E~~~l 151 (168)
T d1hyea2 77 IRLKGGSEFG-PAAAILNVVRCIV--NNEKRLLTLSAYVDG-EFDGIRDVCIGVPVKIGRDGIEEVV-SIELDKDEIIAF 151 (168)
T ss_dssp CC------CC-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-SSSSCEEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred HHhccCcccc-chhhhhHHHHhhh--ccCCCeEEEEEEEec-ccCCcCCEEEeeceEEcCCcEEEEe-cCCCCHHHHHHH
Confidence 8877776653 3445555555555 477899999999998 5776799999999999999999999 589999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013466 406 AKTEQELLAEKKCVAHL 422 (442)
Q Consensus 406 ~~sa~~l~~~~~~~~~~ 422 (442)
++|++.|++.++.+.+|
T Consensus 152 ~~Sa~~lk~~~~~~k~l 168 (168)
T d1hyea2 152 RKSAEIIKKYCEEVKNL 168 (168)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999887654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=9.7e-33 Score=246.18 Aligned_cols=150 Identities=48% Similarity=0.727 Sum_probs=138.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+||||+|+||+++++.|+++++++.++++.|+|+|++.++++++++.+|+.|+.++....+.++.+++++++|||
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 57899999988999999999999999998878899999999999999999999999988666677888899999999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCccee
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNF 244 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvi 244 (442)
+||+++|.||+||++|.|++.+|++|+++++++|.++|.+++++|++|||+|+||++++|+++++|+++|
T Consensus 82 vVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v 151 (154)
T d5mdha1 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENF 151 (154)
T ss_dssp EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred EEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHE
Confidence 9999999999999999999999999999999999999755778999999999999999999978888544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=1.6e-32 Score=241.83 Aligned_cols=141 Identities=21% Similarity=0.294 Sum_probs=124.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~~~~eal~dAD 174 (442)
|.||+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+.. +. ......+++|++++|||
T Consensus 1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~E---lvL~----D~~~~~~~g~a~Dl~~a~~-~~~~~~i~~~~~~~~~~daD 71 (143)
T d1llda1 1 PTKLAVIGA-GAVGSTLAFAAAQRGIARE---IVLE----DIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDPEICRDAD 71 (143)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSE---EEEE----CSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCGGGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcE---EEEE----EeccccchhHHHHHHhccc-cCCCceeecCCCHHHhhCCc
Confidence 469999996 9999999999999999875 6663 5567889999999999863 33 23334577899999999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeecc
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~g 247 (442)
+||+++|.||+||++|.|++..|++|+++++++|++++ |++++|++|||||+||+++++.++ +|+ |+||+|
T Consensus 72 vVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvDvmt~~~~~~sg-~p~~rViG~G 143 (143)
T d1llda1 72 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDIATHVAQKLTG-LPENQIFGSG 143 (143)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHHT-CCTTSEEECT
T ss_pred EEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchHHHHHHHHHHHC-CChhhccCCC
Confidence 99999999999999999999999999999999999995 999999999999999999999995 665 899986
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=3.2e-32 Score=245.31 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=146.4
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
+||++||+++||+++|++|++|+. +||||||++++|+||+++++|.|+.+++.+..+..+++.++.+.++.+++++++.
T Consensus 2 ~LD~~R~~~~la~~lgv~~~~V~~-~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 80 (165)
T d1t2da2 2 VLDTSRLKYYISQKLNVCPRDVNA-HIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL 80 (165)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEC-CEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence 699999999999999999999985 8999999999999999999999999988777788888888888888899999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHHH
Q 013466 329 WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKT 408 (442)
Q Consensus 329 kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~s 408 (442)
+|.++|+ +|.+++..+..++ .+.+.+++++++++| +||+ +|+|||+||++|++|+++++ +++|+++|+++|++|
T Consensus 81 ~~~~~~a-~a~a~~~~~~~i~--~~~~~~~~~~v~~~g-~yg~-~~v~~s~Pv~lg~~Gv~~i~-~l~L~~~E~~~L~~s 154 (165)
T d1t2da2 81 HASPYVA-PAAAIIEMAESYL--KDLKKVLICSTLLEG-QYGH-SDIFGGTPVVLGANGVEQVI-ELQLNSEEKAKFDEA 154 (165)
T ss_dssp TSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHHHH
T ss_pred ccceeec-hhHHHHHHHHHHh--hccccceeeeecccc-cccc-CCeeEeeeEEEcCCceEEEe-CCCCCHHHHHHHHHH
Confidence 9987763 5666666666666 578999999999999 7998 79999999999999999999 589999999999999
Q ss_pred HHHHHHHHHH
Q 013466 409 EQELLAEKKC 418 (442)
Q Consensus 409 a~~l~~~~~~ 418 (442)
+++|+++++.
T Consensus 155 ~~~lk~~~~~ 164 (165)
T d1t2da2 155 IAETKRMKAL 164 (165)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987653
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.98 E-value=4.1e-32 Score=244.88 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=138.0
Q ss_pred ccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
+||.||++||+++||+++|++|++|++ +||||||++++|+||++.++|.|+.++.....+ .+...+...+.+..+.++
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHG-WVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKD-KQDWKKLHKDVVDSAYEV 78 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBC-CBCBCSSTTCCBCGGGCEETTEESHHHHSSTTT-TTTTTHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCccchhhhhhcccCCcchHHhhcccch-hhhcceeEEEecCceEEE
Confidence 589999999999999999999999996 899999999999999999999999987654322 222334444555577777
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 326 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 326 i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+..+|.+.+ ++|.++++++..++ .+++.+++++++++| +||+++++|||+||++|++|+++++ +++|+++|+++|
T Consensus 79 ~~~~~s~~~-a~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~~~i~~s~Pv~lg~~Gv~~v~-~l~L~~~E~~~l 153 (169)
T d1ldma2 79 IKLKGYTSW-AIGLSVADLAETIM--KNLCRVHPVSTMVKD-FYGIKDNVFLSLPCVLNDHGISNIV-KMKLKPNEEQQL 153 (169)
T ss_dssp HHHHSSCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSCCEEEEEEEEETTEEEEEC-CCCCCHHHHHHH
T ss_pred eccccchhh-HHHHHHhhhhheec--CCCCceeeeeeeccc-ccCCcCCceEEeeEEEcCCcEEEEe-cCCCCHHHHHHH
Confidence 777777654 46666666666666 578899999999999 7999999999999999999999998 689999999999
Q ss_pred HHHHHHHHHHHH
Q 013466 406 AKTEQELLAEKK 417 (442)
Q Consensus 406 ~~sa~~l~~~~~ 417 (442)
++|+++|++..+
T Consensus 154 ~~s~~~l~~~~k 165 (169)
T d1ldma2 154 QKSATTLWDIQK 165 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999976444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.98 E-value=2.5e-32 Score=242.01 Aligned_cols=142 Identities=21% Similarity=0.259 Sum_probs=127.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||| |+||+++++.|++.+++++ +.|+ |+++++++|+++||+|+.......+.+++++|++++|||+
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~e---l~L~----Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDv 77 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGIADE---IVLI----DANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADL 77 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEEE----CSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSE
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCCce---EEEE----eeccccccchhccHhhCccccCCCeEEEECCHHHhcccee
Confidence 469999996 9999999999999999865 6663 5567889999999999974334567778899999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeecc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~g 247 (442)
||+++|.|++||++|.|++.+|++|+++++++|++++ |++++|++|||+|+||+++++.++ +|+ |+||+|
T Consensus 78 vvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~~t~~~~k~sg-~p~~rViG~G 148 (148)
T d1ldna1 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKFSG-LPHERVIGSG 148 (148)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHHT-CCGGGEEECT
T ss_pred EEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHHHHHHHHHHHC-cChhheecCC
Confidence 9999999999999999999999999999999999996 999999999999999999999995 665 899986
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.98 E-value=6.2e-32 Score=243.06 Aligned_cols=158 Identities=20% Similarity=0.367 Sum_probs=136.7
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
+||++||+++||+++|++|++|++ +||||||+++||+||+++|+|+|+.+++. .+.+.++.++++.+|+++++.
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~s~vp~~s~~~i~g~~~~~~~~-----~~~~~~~~~~v~~~g~~ii~~ 76 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINA-CVLGGHGDAMVPVVKYTTVAGIPISDLLP-----AETIDKLVERTRNGGAEIVEH 76 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEC-CEEECSGGGEEECGGGCEETTEEHHHHSC-----HHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCCcccCHhhcccCCccccccCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999985 99999999999999999999999998753 344567777888899999875
Q ss_pred c--CCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 329 W--GRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 329 k--G~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+ |.+. ++++.++++.+..++ .+++.+++++++++| +||+ +++|||+||++|++|+++++ +++|+++|+++|+
T Consensus 77 ~~kgsa~-~a~~~~~~~~~~~i~--~~~~~~~~~~~~~~~-~~g~-~~~~~s~P~~lg~~Gv~~i~-~l~Ls~~E~~~l~ 150 (163)
T d1guza2 77 LKQGSAF-YAPASSVVEMVESIV--LDRKRVLPCAVGLEG-QYGI-DKTFVGVPVKLGRNGVEQIY-EINLDQADLDLLQ 150 (163)
T ss_dssp HSSSCCC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred hcCCCcc-hhHHHHHHHHHHhee--ccCCCEEEEeeeecc-ccCC-CCcEEEEeeEEcCCeeEEEe-cCCCCHHHHHHHH
Confidence 4 4443 446666666666555 478999999999999 7999 69999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 013466 407 KTEQELLAEKKC 418 (442)
Q Consensus 407 ~sa~~l~~~~~~ 418 (442)
+|++.|++.++.
T Consensus 151 ~sa~~l~~~i~~ 162 (163)
T d1guza2 151 KSAKIVDENCKM 162 (163)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987763
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.1e-32 Score=244.61 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=139.7
Q ss_pred ccchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhcc--CChHHHHHHHHHHhhhhH
Q 013466 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK--WLEEGFTETIQKVRLRGG 323 (442)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~--~~~~e~~~~~~~v~~~g~ 323 (442)
+||+||++||+++||+++|++|++|+ ++||||||++++|+||+++|+|.|+.+++.+.. +..++...+.+..+..+.
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~-~~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCH-GWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGY 79 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSC-CCEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcE-EEEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhcccee
Confidence 58999999999999999999999998 589999999999999999999999998775432 222233444555566788
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 324 LLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 324 eii~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
+++..+|.+.+ ++|.++++.+..++ .+++.+++++++++| +||+++++|||+||++|++|+++++ +++|+++|++
T Consensus 80 ~~~~~k~~s~~-~~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi~~~i~~s~Pv~ig~~Gv~~v~-~l~L~~~E~~ 154 (172)
T d2ldxa2 80 EVLDMKGYTSW-AIGLSVTDLARSIL--KNLKRVHPVTTLVKG-FHGIKEEVFLSIPCVLGESGITDFV-KVNMTAEEEG 154 (172)
T ss_dssp HHHHHHSSCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEECTT-STTCCSSCEEEEEEEEETTEEEEEE-CCCCCHHHHH
T ss_pred ehhhcccchhH-HHHHHHhHHHHhhc--CCCccceeeeeeccc-ccCCcCCeEEEEEEEEcCCCEEEEe-cCCCCHHHHH
Confidence 88888887765 36666667777666 478899999999999 7999999999999999999999999 6899999999
Q ss_pred HHHHHHHHHHHHH
Q 013466 404 RIAKTEQELLAEK 416 (442)
Q Consensus 404 ~L~~sa~~l~~~~ 416 (442)
+|++|+++|++..
T Consensus 155 ~l~~s~~~lk~~~ 167 (172)
T d2ldxa2 155 LLKKSADTLWNMQ 167 (172)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997643
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=5.3e-32 Score=237.75 Aligned_cols=139 Identities=24% Similarity=0.375 Sum_probs=125.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||| |+||+++++.|+..+++++ |.|+ |+++++++|+++|++|+. ++..+..+.+++|++++|||+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L~----Di~~~~~~g~~~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 71 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFARE---MVLI----DVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSDVV 71 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEEE----CSSHHHHHHHHHHHHHHG-GGSCCCEEEECCGGGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCE---EEEE----ecccccccchhccccccc-cccccccccCCcHHHhcCCCEE
Confidence 69999996 9999999999999999864 6663 455689999999999986 5555667778899999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeec
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~ 246 (442)
|+++|.||+||++|.|++.+|++|+++++++|.++| |+++++++|||+|+||+++++.++ +|+ |+||+
T Consensus 72 vitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd~~t~~~~k~sg-~p~~rViGt 140 (140)
T d1a5za1 72 IVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKESG-MDPRKVFGS 140 (140)
T ss_dssp EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHT-CCTTTEEEC
T ss_pred EEecccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHHHC-cCccceeCc
Confidence 999999999999999999999999999999999996 999999999999999999999995 665 88885
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.97 E-value=1.1e-31 Score=241.56 Aligned_cols=159 Identities=21% Similarity=0.376 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHHHh
Q 013466 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLIKK 328 (442)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii~~ 328 (442)
+||++||+++||+++|++|++|++ +||||||+++||+||+++++|.|+.+++. .+.+.++.++++.+++++++.
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~i~g~~~~~~~~-----~~~~~~~~~~v~~~g~~ii~~ 76 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQA-MLMGGHGDEMVPLPRFSTISGIPVSEFIA-----PDRLAQIVERTRKGGGEIVNL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-CCEECSGGGEECCGGGEEETTEEGGGTSC-----HHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEE-EEEcCCCCceeeeeeeeecCCCchhhccc-----hhhHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999985 99999999999999999999999988743 445677788888899999864
Q ss_pred --cCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 329 --WGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 329 --kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+|.+. +++|.++++.+..++ .+++.+++++++++| +||+ +++|||+||++|++|+++++ +++|+++|+++|+
T Consensus 77 ~~kgs~~-~a~a~a~~~i~~~i~--~~~~~~~~~~~~~~g-~ygi-~~~~~s~P~~ig~~Gv~~v~-~l~L~~~E~~~l~ 150 (164)
T d1uxja2 77 LKTGSAY-YAPAAATAQMVEAVL--KDKKRVMPVAAYLTG-QYGL-NDIYFGVPVILGAGGVEKIL-ELPLNEEEMALLN 150 (164)
T ss_dssp HSSSCCC-HHHHHHHHHHHHHHH--TTCCEEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HhcCccc-chHHHHHHHHHHHHh--CCCCceeeeeeeecc-ccCC-CCceEEECeEEeCCeeEEEe-CCCCCHHHHHHHH
Confidence 44443 456666666666666 478899999999999 7999 68999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHH
Q 013466 407 KTEQELLAEKKCV 419 (442)
Q Consensus 407 ~sa~~l~~~~~~~ 419 (442)
+|+++|+++++.+
T Consensus 151 ~s~~~lk~~i~~l 163 (164)
T d1uxja2 151 ASAKAVRATLDTL 163 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=6.8e-32 Score=239.58 Aligned_cols=148 Identities=22% Similarity=0.298 Sum_probs=125.4
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcc-cceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKV-SNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V-~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
||.|||+||+++|++..+ .++ + .|||||||++|||+||.++++|.+.. +++.++++.++++|
T Consensus 1 Gt~LDsaR~r~~l~~~~~---~~v~~-a~ViGeHGds~vp~~S~~~i~g~~~~-------------~~i~~~v~~~g~eI 63 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAGA---RNIRR-AWIIGEHGDSMFVAKSLADFDGEVDW-------------EAVENDVRFVAAEV 63 (152)
T ss_dssp SHHHHHHHHHHHHHHTTC---BSCCC-CCEEBCSSTTCEECGGGCCCBSCCCH-------------HHHHHHHHTTHHHH
T ss_pred CCccHHHHHHHHHHccCC---CCcce-eEEEecCCCccccccccccccCccch-------------hHhHHHHHHHHHHh
Confidence 789999999999987654 455 5 59999999999999999999997533 24455677799999
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHH
Q 013466 326 IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRI 405 (442)
Q Consensus 326 i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L 405 (442)
+++||.++|+ +|.++++.+.+++ .|++.++|+|++++| +||+ +|+|+|+||++|++|+ +++ +++|+++|+++|
T Consensus 64 i~~kG~t~~g-ia~a~~~iv~aIl--~d~~~v~pvs~~l~g-eyG~-~dv~lsvP~vig~~Gv-ei~-~l~L~~~E~~~l 136 (152)
T d1ojua2 64 IKRKGATIFG-PAVAIYRMVKAVV--EDTGEIIPTSMILQG-EYGI-ENVAVGVPAKLGKNGA-EVA-DIKLSDEEIEKL 136 (152)
T ss_dssp HHHHSSCCHH-HHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEE-EEC-CCCCCHHHHHHH
T ss_pred hhhccceecc-HHHHHHHHHHHHH--hcCCCceeeeEEecc-ccCC-CCEEEEeEEEECCCce-EEE-cCCCCHHHHHHH
Confidence 9999998863 5555555565555 589999999999999 7999 7999999999999998 588 689999999999
Q ss_pred HHHHHHHHHHHHH
Q 013466 406 AKTEQELLAEKKC 418 (442)
Q Consensus 406 ~~sa~~l~~~~~~ 418 (442)
++|++.|++.++.
T Consensus 137 ~~Sa~~ik~~i~~ 149 (152)
T d1ojua2 137 RNSAKILRERLEE 149 (152)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=2.1e-31 Score=239.15 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=133.8
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii 326 (442)
||.||++||+++||+++|++|++|+. +||||||+++||+||+++++|+|+.+++.++.|..+++ .+++++++++++
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i---~~~v~~~~~~i~ 76 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSG-YNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAI---EEEARKGGFTVL 76 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBC-CEEBCTTTTCEECTTTCEETTEEGGGC-----CCHHHH---HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEE-EEEcCCCCcCccceeccccCCchHHHHhccccchHHHH---HHHHhhhHHHHH
Confidence 79999999999999999999999985 89999999999999999999999999887766655544 445556999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+.+|.++|+ .|..+.+.+..+. .++..+++++.|..+ +++|||+||++|++|+++++ +++|+++|+++|+
T Consensus 77 ~~kg~~~~~-~a~~~~~~~~~~~--~~~~~~~~~s~~~~~------~~~~~s~Pv~ig~~Gv~~v~-~l~Ls~~E~~~l~ 146 (163)
T d1hyha2 77 NGKGYTSYG-VATSAIRIAKAVM--ADAHAELVVSNRRDD------MGMYLSYPAIIGRDGVLAET-TLDLTTDEQEKLL 146 (163)
T ss_dssp HHHSSCCHH-HHHHHHHHHHHHH--TTCCEEEEEEEECTT------TCSEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred HHHHhHHHh-HHHHhhHHHHHhc--CCccceeeeceecCC------cceEEEeEEEEcCCeEEEEe-cCCCCHHHHHHHH
Confidence 999988873 4455555555555 477888888877543 56899999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013466 407 KTEQELLAEKKCVAHL 422 (442)
Q Consensus 407 ~sa~~l~~~~~~~~~~ 422 (442)
+|+++|+++++.+...
T Consensus 147 ~s~~~l~~~~~~~~~~ 162 (163)
T d1hyha2 147 QSRDYIQQRFDEIVDT 162 (163)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887643
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.97 E-value=7.3e-32 Score=237.38 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=116.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+. ++..+.++.+++|++++|||+|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l~L~----D~~~~~~~g~a~Dl~~~~-~~~~~~~~~~~~~~~~~~adiv 72 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANE---LVLI----DVFKEKAIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVI 72 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSE---EEEE----CCC---CCHHHHHHTTSC-CCTTCEEEC--CGGGGTTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eccCCccceeeeeeccCc-ccCCCeeEeeCcHHHhCCCceE
Confidence 49999996 9999999999999999875 6663 445678899999999986 5556677888899999999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeecc
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~g 247 (442)
|+++|.+++||++|.+++.+|++|+++++++|.+++ |++++|++|||+|+||+++++.++ +|+ |+||+|
T Consensus 73 vitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvdv~t~~~~k~sg-~p~~rViG~G 142 (142)
T d1y6ja1 73 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKWSG-LPVGKVIGSG 142 (142)
T ss_dssp EECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHHHT-CCTTTEEECT
T ss_pred EEecccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHHHHHHHHHHHHC-CCccceecCC
Confidence 999999999999999999999999999999999995 999999999999999999999995 665 899986
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.97 E-value=1.1e-31 Score=240.28 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=128.1
Q ss_pred hhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc
Q 013466 91 KSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (442)
Q Consensus 91 ~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (442)
+.+.+..||+|||| |+||+++++.|+..++++| +.|+ |+++++++|+++||+|+.........+..++|+++
T Consensus 15 ~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~E---lvLi----D~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~ 86 (160)
T d1i0za1 15 EATVPNNKITVVGV-GQVGMACAISILGKSLADE---LALV----DVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT 86 (160)
T ss_dssp CCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSE---EEEE----CSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG
T ss_pred cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcE---EEEE----EeccchhHHHHHHHhccccccCCCeEEeccchhhc
Confidence 34455679999996 9999999999999999975 6663 55678999999999998643334556788999999
Q ss_pred CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceee
Q 013466 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 171 ~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig 245 (442)
+|||+||+++|.|++||++|.+++..|++|+++++++|++++ |++++|++|||+|+||+++++.+ ++|+ |+||
T Consensus 87 ~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~-p~aiiivvtNPvDv~t~~~~k~s-glp~~rViG 160 (160)
T d1i0za1 87 ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYS-PDCIIIVVSNPVDILTYVTWKLS-GLPKHRVIG 160 (160)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHH-CCCGGGEEE
T ss_pred ccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999999999985 99999999999999999999999 5675 7886
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.97 E-value=7.9e-32 Score=238.21 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=117.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
|.+.+||+|||| |+||+++++.|++.++.++ +.|+ |+++++++|+++||+|+.. +.....+.+++|++++|
T Consensus 2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~e---lvL~----D~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~~~~~ 72 (146)
T d1ez4a1 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEE---FVIV----DVVKDRTKGDALDLEDAQA-FTAPKKIYSGEYSDCKD 72 (146)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSE---EEEE----CSSHHHHHHHHHHHHGGGG-GSCCCEEEECCGGGGTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcE---EEEe----ecccchhHHHHHHHhcccc-ccCCceEeeccHHHhcc
Confidence 556789999995 9999999999999999864 6663 5566889999999999873 33445566778999999
Q ss_pred CcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeecc
Q 013466 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (442)
Q Consensus 173 ADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~g 247 (442)
||+||+++|.|++||++|.+++.+|+++++++++.|.+++ |++++|++|||+|+|++++++.++ +|+ |+||+|
T Consensus 73 adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~-p~aivivvtNPvdv~t~~~~k~sg-~p~~rViG~G 146 (146)
T d1ez4a1 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAANPVDILTYATWKFSG-FPKERVIGSG 146 (146)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHC-CCGGGEEECT
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCcEEEEeCCccHHHHHHHHHHHC-cCccceecCC
Confidence 9999999999999999999999999999999999999985 999999999999999999999995 665 899986
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=1.7e-31 Score=234.98 Aligned_cols=140 Identities=24% Similarity=0.323 Sum_probs=122.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccE-EEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v-~i~~~~~eal~dADi 175 (442)
|||+|||| |+||+++++.|+..+++++ +.|+ |+++++++|+++||+|+...+.... ...+++|++++|||+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~e---lvL~----Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adi 72 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDE---IALV----DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSE---EEEE----CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCce---EEEE----ecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccE
Confidence 79999996 9999999999999999875 6663 5567889999999999873332222 234567999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeec
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~ 246 (442)
||+++|.||+||++|.+++.+|++|+++++++|.+++ |+++++++|||+|+||+++++.++ +|+ |+||.
T Consensus 73 Vvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg-~p~~rViG~ 142 (142)
T d1ojua1 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESG-KPRNEVFGM 142 (142)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSC-CCTTSEEEC
T ss_pred EEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHC-CChhcEecC
Confidence 9999999999999999999999999999999999995 999999999999999999999995 665 88884
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=8.9e-32 Score=237.84 Aligned_cols=140 Identities=17% Similarity=0.246 Sum_probs=118.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
+||+|||| |+||+++++.|+..++.++ +.|+ |+++++++|+++||+|+...+..+..+.+++|++++|||+|
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~e---lvL~----Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADD---YVFI----DANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVV 73 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSE---EEEE----CSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEE
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCce---EEEE----ecccchhhhHHHhhhccccccCCccceeccCHHHhccccEE
Confidence 59999995 9999999999999998865 6663 55678999999999999743334556677899999999999
Q ss_pred EEeCCcCC----CCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeec
Q 013466 177 LLIGAKPR----GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (442)
Q Consensus 177 Ii~ag~~~----kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~ 246 (442)
|+++|.|| +||++|.+++..|++|++++++.|++++ |++++|++|||+|+||+++++.+ ++|+ |+||+
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~s-g~p~~rViGt 146 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVT-GFPAHKVIGT 146 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHH-CCCGGGEEEC
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHh-CCCccceeCc
Confidence 99999887 7899999999999999999999999996 99999999999999999999999 4776 88885
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=6.7e-31 Score=231.86 Aligned_cols=141 Identities=20% Similarity=0.378 Sum_probs=121.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcc--cEEEe-cCcccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR--EVKIG-INPYELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~--~v~i~-~~~~eal~dA 173 (442)
|||+||||+|+||+++++.|+..+++++ +.| +|.+.+.++++|+++||+|+...... ++.+. +++|++++||
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~e---l~L--~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKD---LVL--IGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCE---EEE--EECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccc---ccc--ccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccc
Confidence 6999999889999999999999999875 666 44555557899999999998643333 44443 5689999999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceee
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig 245 (442)
|+||+++|.||+||++|.|++..|++|++++++.|.+++ |++++ ++|||+|+|++++++.+ ++|+ |+||
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~-~~~ii-vVtNPvD~mt~~~~k~s-g~p~~rViG 145 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF-VITNPVDVMTYKALVDS-KFERNQVFG 145 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-ECSSSHHHHHHHHHHHH-CCCTTSEEE
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccC-CCeEE-EEcCchHHHHHHHHHHH-CcCcccccC
Confidence 999999999999999999999999999999999999995 88764 68999999999999999 4666 8886
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=1.6e-30 Score=233.97 Aligned_cols=164 Identities=20% Similarity=0.309 Sum_probs=137.7
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHH-HHHHHHHHhhhhHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG-FTETIQKVRLRGGLLI 326 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e-~~~~~~~v~~~g~eii 326 (442)
|+||++||+++||+++|+++++|+ .+||||||+++||+||+++++|.++.+++.+..+...+ .+++.+.++..+++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 79 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVH-AYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII 79 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEE-EEEEBCSSTTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeE-EEEEcCCCCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence 789999999999999999999998 49999999999999999999999999887665554433 3445555666778888
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
..+|.+.+ +++....+.+..++ .+.+.+++++++++| .||. +++|||+||++|++|+++++ +++|+++|+++|+
T Consensus 80 ~~~~~s~~-~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~yg~-~~v~~s~Pv~lg~~Gv~~v~-~l~Ls~~E~~~L~ 153 (168)
T d1ldna2 80 EKKGATYY-GIAMGLARVTRAIL--HNENAILTVSAYLDG-LYGE-RDVYIGVPAVINRNGIREVI-EIELNDDEKNRFH 153 (168)
T ss_dssp HHHSCCCH-HHHHHHHHHHHHHH--TTCCEEEEEEEEEES-TTSC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred Hhhccccc-hHHHHHhhHHHhhh--cccceeeeeeeeecc-ccCC-CCeeecceEEEcCCeEEEEe-CCCCCHHHHHHHH
Confidence 88887665 34455555555555 467899999999999 7995 79999999999999999988 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 013466 407 KTEQELLAEKKC 418 (442)
Q Consensus 407 ~sa~~l~~~~~~ 418 (442)
+|+++|+++++.
T Consensus 154 ~s~~~lk~~i~~ 165 (168)
T d1ldna2 154 HSAATLKSVLAR 165 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.1e-31 Score=230.99 Aligned_cols=140 Identities=24% Similarity=0.304 Sum_probs=118.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|||+||||+|+||+++++.|+.. ++.++ +.| +|++ +.++|.++||+|+.+........++++|++++|||+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~e---l~L--~D~~---~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDv 72 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE---LSL--YDIA---PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADV 72 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCE---EEE--ECSS---TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcE---EEE--eccc---ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCE
Confidence 69999998799999999999765 66543 555 4433 467899999999875443344445778999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHH---HCCCCCc-ceee
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK---NAPSIPA-KNFH 245 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k---~s~~~p~-kvig 245 (442)
||+++|.||+||++|.|++..|++|+++++++|.+++ |+++++++|||+|+|++++++ ..+++|+ |+||
T Consensus 73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 9999999999999999999999999999999999995 999999999999999998754 4556776 7776
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.97 E-value=4.3e-30 Score=229.25 Aligned_cols=159 Identities=21% Similarity=0.324 Sum_probs=138.2
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~eii 326 (442)
||+||++||+++||+++|++|++|++ +||||||++++|+||+++++|.+... ..+++.+.+++++.++++++
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~-~ViG~Hg~~~v~~~s~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~i~ 73 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEG-TILGEHGDAQVPVFSKVSVDGTDPEF-------SGDEKEQLLGDLQESAMDVI 73 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEEC-CEEECSSTTEEECGGGCEETTBCCCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEE-EEEeCCCCceeeehhhhccccccccc-------chHHHHHHHHHhhhhHHHHH
Confidence 59999999999999999999999996 89999999999999999999887542 34566777778888999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+.+|.+.+ ++|.++++.+..++ .+.+.+++++++++| +|+. +++|||+||++|++|+++++ +++|+++|+++|+
T Consensus 74 ~~~~~s~~-~~a~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~-~~i~~S~Pv~ig~~Gv~~v~-~l~l~~~E~~~L~ 147 (161)
T d1o6za2 74 ERKGATEW-GPARGVAHMVEAIL--HDTGEVLPASVKLEG-EFGH-EDTAFGVPVSLGSNGVEEIV-EWDLDDYEQDLMA 147 (161)
T ss_dssp TTTSSCCH-HHHHHHHHHHHHHH--TTCCCEEEEEEEEES-GGGC-EEEEEEEEEEEETTEEEEEC-CCCCCHHHHHHHH
T ss_pred Hhhhhhhh-HHHHhhHhhhHhhh--hccccceeecccccc-cccc-cCceeeeeeEEcCCCEEEEe-CCCCCHHHHHHHH
Confidence 88887765 45666666666666 467889999999998 6776 79999999999999999999 6899999999999
Q ss_pred HHHHHHHHHHHHH
Q 013466 407 KTEQELLAEKKCV 419 (442)
Q Consensus 407 ~sa~~l~~~~~~~ 419 (442)
+|+++|+++++.+
T Consensus 148 ~s~~~L~~~~~~i 160 (161)
T d1o6za2 148 DAAEKLSDQYDKI 160 (161)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=1.2e-30 Score=229.47 Aligned_cols=140 Identities=25% Similarity=0.360 Sum_probs=122.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dADi 175 (442)
|||+|||| |+||+++++.|+..+++++ +.|+ |++++++++.++|++|.......+.++ .++++++++|||+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~e---l~L~----Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadv 72 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARE---LVLL----DVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDI 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSE---EEEE----CSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCce---EEEe----ccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeE
Confidence 69999996 9999999999999999864 6664 455678999999999886322223333 3678999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeec
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHA 246 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~ 246 (442)
||+++|.|++||++|.+++.+|++|+++++++|.++| |++|++++|||+|++|+++++.+ ++|+ |+||.
T Consensus 73 vvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd~~~~~~~~~s-g~p~~rviG~ 142 (142)
T d1guza1 73 VIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGM 142 (142)
T ss_dssp EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHH-CSCGGGEEEE
T ss_pred EEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChHHHHHHHHHHh-CCChHhEeeC
Confidence 9999999999999999999999999999999999996 99999999999999999999998 5776 88874
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=7.9e-31 Score=234.62 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=125.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|||| |+||+++++.|+..+++++ |.|+ |+++++++|+++||+|+.........+..++|++++|||+
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~e---lvL~----D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adi 90 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGLADE---LALV----DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKL 90 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTSCSE---EEEE----CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCE---EEEE----eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccE
Confidence 469999996 9999999999999999875 6663 5567899999999999874444456677789999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceee
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig 245 (442)
||+++|.||+||++|.|++..|++|+++++++|++++ |+++++++|||+|+||+++++.++ +|+ |+||
T Consensus 91 vvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~-p~~ivivvtNPvDv~t~~~~k~sg-~p~~rV~G 159 (159)
T d2ldxa1 91 VIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNS-PDCKIIVVTNPVDILTYVVWKISG-FPVGRVIG 159 (159)
T ss_dssp EEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHS-TTCEEEECSSSHHHHHHHHHHHHC-SCTTTEEE
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccC-CCeEEEEeCCcHHHHHHHHHHHHC-cCcccccC
Confidence 9999999999999999999999999999999999985 999999999999999999999995 665 8887
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.96 E-value=3.3e-32 Score=246.56 Aligned_cols=163 Identities=24% Similarity=0.342 Sum_probs=137.5
Q ss_pred chhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcccccccccccCcchhhhhhhccC-ChHHHHHHHHHHhhhhHHHH
Q 013466 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW-LEEGFTETIQKVRLRGGLLI 326 (442)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~vp~~S~a~I~G~p~~~~i~~~~~-~~~e~~~~~~~v~~~g~eii 326 (442)
|+||++||+++||+++|+++++|+ ++||||||++|||+||+++++|+|+.+++.+..+ ..+.+.++.++++.++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~-~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 79 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVH-AYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII 79 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCE-EEEEBSSSSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred CchHHHHHHHHHHHHhCcCHHHeE-EEEEcCCCCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence 789999999999999999999998 4999999999999999999999999988765432 23334556667777899999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 327 KKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 327 ~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+.+|.++++ +|.+.++.+..++ .+++.+++++++++| +||+ +++|||+||++|++|+++++ +++|+++|+++|+
T Consensus 80 ~~kg~~~~a-~a~~~~~~~~~~~--~~~~~~~~~~~~~~g-~ygi-~~~~~s~P~~lg~~Gv~~i~-~l~L~~~E~~~l~ 153 (172)
T d1llca2 80 KLKGATFYG-IATALARISKAIL--NDENAVLPLSVYMDG-QYGI-NDLYIGTPAVINRNGIQNIL-EIPLTDHEEESMQ 153 (172)
T ss_dssp SSSSCTTHH-HHHHHHHHHHHHH--HTCCCCEECCCCCSS-SSSC-CSSCCBCEEEEETTEEEEEC-CCCCTTHHHHHHH
T ss_pred Hhhhhhhhh-hHHHHHHHHHHHh--cCCCCccceeeeecC-ccCc-ccceEEEEEEEcCCceEEEe-cCCCCHHHHHHHH
Confidence 998887763 4445555555555 467889999999999 7999 57999999999999999999 5899999999999
Q ss_pred HHHHHHHHHHH
Q 013466 407 KTEQELLAEKK 417 (442)
Q Consensus 407 ~sa~~l~~~~~ 417 (442)
+|+++|++.++
T Consensus 154 ~s~~~lk~~i~ 164 (172)
T d1llca2 154 KSASQLKKVLT 164 (172)
T ss_dssp TTTTTTTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999987543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=2.1e-29 Score=221.95 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=116.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCcEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWA 176 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dADiV 176 (442)
||+||||+|+||+++++.|+.++++++ +.|+ |++ ..+++++||+|+.........+ ..+.+++++|||+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~e---lvLi--Di~----~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSR---LTLY--DIA----HTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSE---EEEE--ESS----SHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccce---EEEE--ecc----ccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 899999879999999999999999875 6664 332 3578999999987433233334 34557899999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHH---HHCCCCCc-ceee
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL---KNAPSIPA-KNFH 245 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~---k~s~~~p~-kvig 245 (442)
|+++|.||+|||+|.+++..|++|+++++++|.+++ |+++++++|||+|+|+++++ +..+++|+ |+||
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 999999999999999999999999999999999995 99999999999999988764 45667776 7886
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.96 E-value=2.4e-29 Score=222.98 Aligned_cols=141 Identities=21% Similarity=0.324 Sum_probs=120.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccE-EEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV-KIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v-~i~~~~~eal~dAD 174 (442)
..||+|||| |+||+++++.|+++++ . ++.|+ |+++++++|+++||+|+......+. ...+++|++++|||
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~---el~L~----Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~ad 73 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNL-G---DVVLF----DIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD 73 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-C---EEEEE----CSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCC-C---eEEEE----eccCCcceeeecchhhhccccCCCcEEEecccccccCCCc
Confidence 469999995 9999999999999886 3 26663 4566889999999999853222233 33468899999999
Q ss_pred EEEEeCCcCCCCCCc-----HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceeecc
Q 013466 175 WALLIGAKPRGPGME-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHAL 247 (442)
Q Consensus 175 iVIi~ag~~~kpg~~-----r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig~g 247 (442)
+||+++|.+++||++ |.+++..|++++++++++|+++| |+++++++|||+|+||+++++.++ +|+ |+||+|
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~~~sg-~p~~rViG~G 150 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVMVQLLHQHSG-VPKNKIIGLG 150 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHHHHHHHHHHC-CCGGGEEECC
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHHHHHHHHHHHC-CCchheeccC
Confidence 999999999999975 99999999999999999999995 999999999999999999999984 665 899986
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.96 E-value=1.6e-29 Score=222.23 Aligned_cols=138 Identities=24% Similarity=0.348 Sum_probs=110.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~~~eal~dADi 175 (442)
+||+|||| |+||+++|+.|+..++. ++.| + |++++++++.++|++|+........++ .+++|++++|||+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~----dl~l--~--D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~adv 72 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELG----DIVL--L--DIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDV 72 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCS----EEEE--E--CSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcc----eEEE--E--eeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCE
Confidence 59999996 99999999999998873 2555 3 456688999999999986322233333 3678999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ceee
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kvig 245 (442)
||+++|.|++||++|.|++..|++|+++++++|.+++ |+++++++|||+|+||+++++.++ +|+ |+||
T Consensus 73 vvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPvDv~t~~~~~~sg-lp~~rViG 141 (142)
T d1uxja1 73 IVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEVSG-FPKERVIG 141 (142)
T ss_dssp EEECCSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSHHHHHHHHHHHHC-CCGGGEEE
T ss_pred EEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCchHHHHHHHHHHHC-cCcccccC
Confidence 9999999999999999999999999999999999995 999999999999999999999984 666 8887
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.96 E-value=3.1e-29 Score=226.27 Aligned_cols=164 Identities=19% Similarity=0.090 Sum_probs=130.1
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecC-CCcccccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG-~t~vp~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
.|.||++||+++||+++|++|++|++ +|+|+|| ++++|+||++.+++.+ ..+++.++.++++.+++++
T Consensus 1 ~T~LDs~R~~~~la~~l~v~~~~V~~-~ViGeHg~~t~vp~~s~~~~~~~~----------~~~~~~~l~~~v~~~~~ei 69 (169)
T d1mlda2 1 VTTLDIVRANAFVAELKGLDPARVSV-PVIGGHAGKTIIPLISQCTPKVDF----------PQDQLSTLTGRIQEAGTEV 69 (169)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGGCBC-CEEECSSGGGEEECGGGCBSCCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeeE-EEEEcCCCcceeehhhhhccCCCC----------cHHHHHHHHHHHHHhHHHH
Confidence 38899999999999999999999996 8999995 7888888887766542 3356677888888899999
Q ss_pred HHhcCCCch--HHHHHHHHHHHHHhhcC-CCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHH
Q 013466 326 IKKWGRSSA--ASTAVSIVDAMKSLVTP-TPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR 402 (442)
Q Consensus 326 i~~kG~ss~--~s~A~~i~~aI~~~l~~-~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~ 402 (442)
++.+|.+++ +++++++++++..++.. .+...+.+++ .+ .||..+++|||+||++|++|++++++.+.|+++|+
T Consensus 70 i~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~---~~-~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~ 145 (169)
T d1mlda2 70 VKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECS---FV-KSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEE 145 (169)
T ss_dssp HHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEE---EE-ECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHH
T ss_pred HHhhcCcChHhHHHHHHHHHHHHHhccccCCceEEEEEe---ec-cccccCCEeEeeeEEEcCCccEEEecCCCCCHHHH
Confidence 998876554 56667766666655421 1223333332 33 45666789999999999999999995458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 013466 403 KRIAKTEQELLAEKKCVAHLTGE 425 (442)
Q Consensus 403 ~~L~~sa~~l~~~~~~~~~~~~~ 425 (442)
++|++|+++|++.++.+..|+++
T Consensus 146 ~~l~~s~~~lk~~I~~g~~fi~~ 168 (169)
T d1mlda2 146 KMIAEAIPELKASIKKGEEFVKN 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.95 E-value=1.5e-28 Score=218.87 Aligned_cols=144 Identities=20% Similarity=0.268 Sum_probs=122.2
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC--cccEEEecCcccc
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--LREVKIGINPYEL 169 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~--~~~v~i~~~~~ea 169 (442)
+++|.+||+|||| |+||+++++.|++.++. ++.|+ |+++++++|+++||+|+.... ...+..+.+.+++
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~----el~L~----D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~ 73 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA----DVVLY----DVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAA 73 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC----EEEEE----CSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHH
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCc----eEEEE----EeccccchhHHHHHhhhccccCCeeEEeccCchhhh
Confidence 4566789999996 99999999999998863 25553 456689999999999985322 2344455556689
Q ss_pred cCCCcEEEEeCCcCCCCCC-----cHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCc-ce
Q 013466 170 FEDAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KN 243 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~-----~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~-kv 243 (442)
++|||+||+++|.+|+||+ +|.+++..|++|++++++.|.++| |+++++++|||+|+||+++++.++ +|+ |+
T Consensus 74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~lt~~~~~~sg-~p~~rV 151 (154)
T d1pzga1 74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEASG-VPTNMI 151 (154)
T ss_dssp HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHC-CCGGGE
T ss_pred hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHHHHHHHHHHhC-cChhcE
Confidence 9999999999999999985 899999999999999999999995 999999999999999999999994 666 88
Q ss_pred eec
Q 013466 244 FHA 246 (442)
Q Consensus 244 ig~ 246 (442)
||+
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 884
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=9.8e-27 Score=209.13 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=122.8
Q ss_pred cchhhHHHHHHHHHHHhCCCcCcccceEEEeecCCCcc-cccccccccCcchhhhhhhccCChHHHHHHHHHHhhhhHHH
Q 013466 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQV-PDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLRGGLL 325 (442)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG~t~v-p~~S~a~I~G~p~~~~i~~~~~~~~e~~~~~~~v~~~g~ei 325 (442)
.|.||++||+++||+++|++|++|++ +|+|+||++++ |++|++...+ ++..++.++.++++.+++++
T Consensus 1 ~T~LDs~R~~~~iA~~l~v~~~~V~~-~ViGghg~~~~~p~~s~~~~~~-----------~~~~~~~~l~~~v~~~g~~i 68 (167)
T d2cmda2 1 VTTLDIIRSNTFVAELKGKQPGEVEV-PVIGGHSGVTILPLLSQVPGVS-----------FTEQEVADLTKRIQNAGTEV 68 (167)
T ss_dssp CCHHHHHHHHHHHHHHHTCCGGGCCC-CEEECSSTTTEEECGGGCTTCC-----------CCHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHCcCHHHeEE-EEEEcCCCceEeeecccccCCC-----------CcHHHHHHHHHHHHhhhhhh
Confidence 38899999999999999999999996 89999985555 5555554222 23456677888888899999
Q ss_pred HHhcC-CCch-HHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 326 IKKWG-RSSA-ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 326 i~~kG-~ss~-~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
++.++ .+++ .+.|.++++.+..++. +.+...++++...+ .|+.++++|||+||++|++|++++++.+.|+++|++
T Consensus 69 i~~~~~~~~~~~~~a~a~~~~~~~i~~--~~~~~~~~~~~~~~-~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~ 145 (167)
T d2cmda2 69 VEAKAGGGSATLSMGQAAARFGLSLVR--ALQGEQGVVECAYV-EGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQN 145 (167)
T ss_dssp HHHHTTSCSCCHHHHHHHHHHHHHHHH--HHTTCSSCEEEEEE-ECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHH
T ss_pred hhhhccCcchHHHHHHHHHHHHHHHhc--cCCCceEEEEEccc-ccccCCCccccccEEEeCCceEEEeeCCCCCHHHHH
Confidence 97553 2222 3445444444444432 23334445555555 677778999999999999999999954479999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 013466 404 RIAKTEQELLAEKKCVAHLTG 424 (442)
Q Consensus 404 ~L~~sa~~l~~~~~~~~~~~~ 424 (442)
+|++|+++|+++++.+..|++
T Consensus 146 ~l~~s~~~lk~~I~~~~~fi~ 166 (167)
T d2cmda2 146 ALEGMLDTLKKDIALGQEFVN 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998874
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.89 E-value=1.7e-23 Score=188.61 Aligned_cols=143 Identities=9% Similarity=-0.023 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCchHHH--HHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCcccc
Q 013466 96 MVNIAVSGAAGMIANH--LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~--la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~ea 169 (442)
++||+|||| |++|.+ ++..+.....+.. .+|.| + |+++++.++.++|+.|... ....++..+++.+++
T Consensus 1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~-~eI~L--~--Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~a 74 (169)
T d1s6ya1 1 RLKIATIGG-GSSYTPELVEGLIKRYHELPV-GELWL--V--DIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA 74 (169)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCCE-EEEEE--E--CCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred CcEEEEECC-ChhhHHHHHHHHHHhccccCC-CEEEE--E--cCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhh
Confidence 379999996 988754 4445555444321 13444 4 4445667778888876431 223466778899999
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhH--------------------HHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGL--------------------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dl--------------------l~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
++|||+||+++|.+++||++|.++ +.+|++++++++++|+++| |++|+|++|||+|+||
T Consensus 75 l~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNPvdv~t 153 (169)
T d1s6ya1 75 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVT 153 (169)
T ss_dssp HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHH
T ss_pred cCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCChHHHHH
Confidence 999999999999998888877766 4699999999999999996 9999999999999999
Q ss_pred HHHHHHCCCCCcceeecc
Q 013466 230 LICLKNAPSIPAKNFHAL 247 (442)
Q Consensus 230 ~~~~k~s~~~p~kvig~g 247 (442)
++++|.+| +.|+||.|
T Consensus 154 ~~~~k~~p--~~kviGlC 169 (169)
T d1s6ya1 154 EAVLRYTK--QEKVVGLC 169 (169)
T ss_dssp HHHHHHCC--CCCEEECC
T ss_pred HHHHHHCC--CCCEEeeC
Confidence 99999863 34899986
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=6.8e-23 Score=184.19 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=109.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHH-HH-HcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFK-LA-AGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYEL 169 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~-L~-~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~ea 169 (442)
+|..||+|||| |.+|...+.. ++ ...-+. ..+|+| + |++++++++.+.|+.+... ....++..+++.+|+
T Consensus 1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~-~~eivL--~--Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea 74 (167)
T d1u8xx1 1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFP-IRKLKL--Y--DNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEA 74 (167)
T ss_dssp CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSC-EEEEEE--E--CSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHH
T ss_pred CCCceEEEECC-ChhhhHHHHHHHHhhhhhcC-CCEEEE--E--cCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhc
Confidence 35689999996 9998875543 22 222221 123555 4 4456788888888876642 223467788899999
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHH--------------------HHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHH
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLD--------------------INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~--------------------~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt 229 (442)
++|||+||+++|.+++||++|.+++. +|+++++++++.|+++| |+||+|++|||+|++|
T Consensus 75 l~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvdv~t 153 (167)
T d1u8xx1 75 FTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVA 153 (167)
T ss_dssp HSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHHHHH
T ss_pred cCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHHHHH
Confidence 99999999999999999999988864 66999999999999996 9999999999999999
Q ss_pred HHHHHHCCCCCccee
Q 013466 230 LICLKNAPSIPAKNF 244 (442)
Q Consensus 230 ~~~~k~s~~~p~kvi 244 (442)
++++|++ .+.|+|
T Consensus 154 ~~~~k~~--P~~rVI 166 (167)
T d1u8xx1 154 EATRRLR--PNSKIL 166 (167)
T ss_dssp HHHHHHS--TTCCEE
T ss_pred HHHHHHC--Cccccc
Confidence 9999985 223766
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=3.9e-23 Score=185.01 Aligned_cols=141 Identities=14% Similarity=0.015 Sum_probs=106.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC-CCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP-DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~-~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|||+|||| |++|.+.++.......... ..+|.| +| +++++++ .+.|+.|.......++.++++++++++|||+
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L--~D--id~~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDv 74 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIF--YD--IDEEKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKY 74 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEE--EC--SCHHHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEE--Ee--cCcHHHH-HHHHHHHhhhccCceEEEecCcccccCCCCE
Confidence 69999996 9999998876554333210 123555 43 3456666 5677777654445678888999999999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHH--------------------HHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHH
Q 013466 176 ALLIGAKPRGPGMERAGLLDI--------------------NGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~--------------------N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~ 235 (442)
||+++|.+++++++|.+++.. +++++.++.+ +.++| |++|+|++|||+|.+|+++++.
T Consensus 75 VVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~-p~a~~i~vtNPvdiit~~~~~~ 152 (162)
T d1up7a1 75 VIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKT-SNATIVNFTNPSGHITEFVRNY 152 (162)
T ss_dssp EEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHT-TCCEEEECSSSHHHHHHHHHHT
T ss_pred EEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccC-CCeEEEEeCCHHHHHHHHHHHh
Confidence 999999999998888766654 5566666655 67775 9999999999999999999998
Q ss_pred CCCCCcceeecc
Q 013466 236 APSIPAKNFHAL 247 (442)
Q Consensus 236 s~~~p~kvig~g 247 (442)
+| +.|+||.|
T Consensus 153 ~p--~~rviGlC 162 (162)
T d1up7a1 153 LE--YEKFIGLC 162 (162)
T ss_dssp TC--CSSEEECC
T ss_pred CC--CCCEEeeC
Confidence 63 24899976
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.3e-21 Score=176.56 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=109.5
Q ss_pred CCEEEEEcCCCchHHHHHH--HHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CCcccEEEecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLF--KLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~--~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~~~~v~i~~~~~eal~ 171 (442)
.+||+|||| |++|++++. .|+....+.. .+|+| + |++++++++.+.|+.|... ....++..+++.+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~-~eivL--~--Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSG-STVTL--M--DIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTT-CEEEE--E--CSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCC-CEEEE--E--eCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc
Confidence 579999996 999988543 3444333321 24666 3 4557899999999998652 22346777888999999
Q ss_pred CCcEEEEeCC------------------cCCCCCCcHHhH--------HHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 172 DAEWALLIGA------------------KPRGPGMERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 172 dADiVIi~ag------------------~~~kpg~~r~dl--------l~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
|||+|+++.+ .+++++++|.++ +.+|+++++++++.|+++| |++|+|++|||+
T Consensus 76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a~~i~~TNPv 154 (171)
T d1obba1 76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQAANPI 154 (171)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEECSSCH
T ss_pred CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCeEEEEECChH
Confidence 9999998754 456777777665 5689999999999999996 999999999999
Q ss_pred hHHHHHHHHHCCCCCcceee
Q 013466 226 NTNALICLKNAPSIPAKNFH 245 (442)
Q Consensus 226 d~lt~~~~k~s~~~p~kvig 245 (442)
|++|++++|+++ + |+||
T Consensus 155 dv~t~~~~k~~~-~--k~iG 171 (171)
T d1obba1 155 FEGTTLVTRTVP-I--KAVG 171 (171)
T ss_dssp HHHHHHHHHHSC-S--EEEE
T ss_pred HHHHHHHHHhcC-C--CccC
Confidence 999999999985 5 7776
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=2.2e-08 Score=94.20 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh-----------ccCChHH----------
Q 013466 253 NRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD-----------HKWLEEG---------- 310 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~-----------~~~~~~e---------- 310 (442)
.-+.++||+.+|+++++|+. -+.| || +.|+..++++|+++...+.+ ..|..+-
T Consensus 4 i~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~ 78 (253)
T d1up7a2 4 INFIREIAEMFSARLEDVFL-KYYGLNH----LSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNP 78 (253)
T ss_dssp HHHHHHHHHHTTCCGGGEEE-EEEEETT----EEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECG
T ss_pred HHHHHHHHHHhCCCHHHcEE-EEEEECC----hhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEcc
Confidence 45678999999999999994 7799 99 99999999999876643311 0111000
Q ss_pred -------HHHHHHHHh---hhhHHH--------------------HHhcCCCchHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 013466 311 -------FTETIQKVR---LRGGLL--------------------IKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSS 360 (442)
Q Consensus 311 -------~~~~~~~v~---~~g~ei--------------------i~~kG~ss~~s~A~~i~~aI~~~l~~~d~~~v~~~ 360 (442)
-.+.+++.. .++.++ +.+++...++..|..++++|. +|++.++.+
T Consensus 79 Yl~Yy~~~~~~~~~~~~~~tra~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~ai~-----~~~~~~~~v 153 (253)
T d1up7a2 79 YLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLE-----TDEGKIHIV 153 (253)
T ss_dssp GGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHHHHHHHHHHHHH-----SSSCEEEEE
T ss_pred cchhhcCcHHHHHHhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchHHHHHHHHHHHH-----cCCCcEEEE
Confidence 001111111 122222 134555556788888888887 688899999
Q ss_pred eeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 361 GVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 361 sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
+|.++|.+-|+|+|+++++||.|+++|+.++- ...|.+.....++
T Consensus 154 Nv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~-~g~lP~~~~~Li~ 198 (253)
T d1up7a2 154 NTRNNGSIENLPDDYVLEIPCYVRSGRVHTLS-QGKGDHFALSFIH 198 (253)
T ss_dssp EEECTTSSTTSCTTCEEEEEEEEETTEEEEBC-CCCCCHHHHHHHH
T ss_pred eCCCcCcCCCCChhhheEEEEEecCCcccccc-cCCCcHHHHHHHH
Confidence 99999988899999999999999999999876 5788887766554
|
| >d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.74 E-value=4.8e-08 Score=92.63 Aligned_cols=143 Identities=20% Similarity=0.270 Sum_probs=99.8
Q ss_pred HHHHHHHHHhCCCcCcccceEEEe-ecCCCcccccccccccCcchhhhhhh-----------------ccCCh-------
Q 013466 254 RAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD-----------------HKWLE------- 308 (442)
Q Consensus 254 R~~~~lA~~lgv~p~~V~~~~ViG-~HG~t~vp~~S~a~I~G~p~~~~i~~-----------------~~~~~------- 308 (442)
-+.+.+|+.||+++++|+ +-+.| || +-|+...+.+|+++...+.+ ..|..
T Consensus 5 ~~~~~la~~Lg~~~~~i~-~~~~GlNH----~~W~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (270)
T d1s6ya2 5 GMRMGVAKLLGVDADRVH-IDFAGLNH----MVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLK 79 (270)
T ss_dssp HHHHHHHHHHTSCGGGEE-EEEEEETT----EEEEEEEEETTEECHHHHHHHHSCC------------CCCCHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHcE-EEEEeeCC----HhHeeeeEECCccccHHHHHHHhcccccccccccccccCcCHHHHHhcc
Confidence 356789999999999999 47799 99 88999999999766643321 01211
Q ss_pred -------------H-HHHHHHHHHhh---hh-------HHH---------------HHhcCCCchHHHHHHHHHHHHHhh
Q 013466 309 -------------E-GFTETIQKVRL---RG-------GLL---------------IKKWGRSSAASTAVSIVDAMKSLV 349 (442)
Q Consensus 309 -------------~-e~~~~~~~v~~---~g-------~ei---------------i~~kG~ss~~s~A~~i~~aI~~~l 349 (442)
+ .+.+....-.. ++ .+. ....+...+...|..|+++|.
T Consensus 80 ~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~e~a~~ii~ai~--- 156 (270)
T d1s6ya2 80 VLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACSLISSIY--- 156 (270)
T ss_dssp SBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCCHHHHHHHHHHHHH---
T ss_pred cEeccccccccccHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHhHHhccCcchhhhccCcchHHHHHHHHHHHh---
Confidence 1 11111110000 00 011 122344445788899988888
Q ss_pred cCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHHH
Q 013466 350 TPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAK 407 (442)
Q Consensus 350 ~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~~ 407 (442)
+|.+.++.++|.++|.+-++|+|+++.+||+|+++|+.++- ..+|.+..+..++.
T Consensus 157 --~~~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~-~g~lP~~~~~Li~~ 211 (270)
T d1s6ya2 157 --NDKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIA-VGDLPVAVRGLVQQ 211 (270)
T ss_dssp --HTCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECC-CBCCCHHHHHHHHH
T ss_pred --cCCCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEeee-cCCCcHHHHHHHHH
Confidence 47889999999999988899999999999999999999876 67898887776653
|
| >d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=9.5e-08 Score=90.82 Aligned_cols=142 Identities=16% Similarity=0.266 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhCCCc-CcccceEEEe-ecCCCccccccccc-ccCcchhhhhhhc-----------------cCChHHHH
Q 013466 253 NRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNAR-INGLPVKEIIKDH-----------------KWLEEGFT 312 (442)
Q Consensus 253 ~R~~~~lA~~lgv~p-~~V~~~~ViG-~HG~t~vp~~S~a~-I~G~p~~~~i~~~-----------------~~~~~e~~ 312 (442)
.-++..+|+.||++| ++|+ +-+.| || +.||.+++ .+|+++...+.+. .|..+ +.
T Consensus 6 ~~~~~~ia~~Lgv~~~~ev~-~~~~GLNH----~~w~~~v~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (276)
T d1u8xx2 6 VGIEDRMAQILGLSSRKEMK-VRYYGLNH----FGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWNDT-FA 79 (276)
T ss_dssp HHHHHHHHHHHTCSCGGGEE-EEEEEETT----EEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC-------CTTSH-HH
T ss_pred HHHHHHHHHHcCCCchhceE-EEEEeecc----HHHHhheeccCCEECHHHHHHHHHhcCCCCcccccccccccHHH-HH
Confidence 446788999999987 5799 47799 99 88999987 6898766543210 11110 10
Q ss_pred -------------------------HHHHHH---hhhhHHHHH----------------------hcCCCchHHHHHHHH
Q 013466 313 -------------------------ETIQKV---RLRGGLLIK----------------------KWGRSSAASTAVSIV 342 (442)
Q Consensus 313 -------------------------~~~~~v---~~~g~eii~----------------------~kG~ss~~s~A~~i~ 342 (442)
+++++. ..++.++++ ..+...+++.|..++
T Consensus 80 ~~~~~~~~~~~~~p~~Yl~Yy~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~av~ii 159 (276)
T d1u8xx2 80 KARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLA 159 (276)
T ss_dssp HHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCCTTTHHHHHHH
T ss_pred HHhCCcccCCcccchhHHHhccchHHHHHHhccCCCcHHHHHHHHHHHHHHhHHhhcccccchhhcccCCchHHHHHHHH
Confidence 000100 012223321 112223466778888
Q ss_pred HHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHHHHH
Q 013466 343 DAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIA 406 (442)
Q Consensus 343 ~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~~L~ 406 (442)
++|. +|.+.++.++|.++|.+-++|+|+++++||+|+++|+.++- ..+|.+..+..++
T Consensus 160 ~ai~-----~~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~-~g~lP~~~~~Li~ 217 (276)
T d1u8xx2 160 RAIA-----YNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPIT-VGTIPQFQKGLME 217 (276)
T ss_dssp HHHH-----HTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECC-CBCCCHHHHHHHH
T ss_pred HHHh-----cCCCcEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeee-cCCCcHHHHHHHH
Confidence 8877 47889999999999988999999999999999999999876 6788887776654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.4e-07 Score=84.78 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=70.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh-------cccC------------CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE-------DSLF------------PLL 157 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~-------~~~~------------~~~ 157 (442)
.||+|||| |.+|+.+|..++..|+ ++.|++.+ ++.++.....++ .... ..+
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~-----~V~l~D~~----~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 74 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGH-----TVVLVDQT----EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTL 74 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEECSC----HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCC-----cEEEEECC----hHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHH
Confidence 59999996 9999999999999886 46665433 332221111111 0000 011
Q ss_pred ccEEEecCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 158 ~~v~i~~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.++..+++..++++|||+|+-+.- +|.++-+++...|.+++.+++++ .||..
T Consensus 75 ~~i~~~~d~~~a~~~ad~ViEav~--------------E~l~~K~~v~~~l~~~~~~~~il--asnTS 126 (192)
T d1f0ya2 75 STIATSTDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTS 126 (192)
T ss_dssp HTEEEESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCS
T ss_pred hhccccchhHhhhcccceehhhcc--------------cchhHHHHHHHHHhhhcccCcee--eccCc
Confidence 357777877889999999998732 35788889999999998778776 67653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.41 E-value=2.1e-07 Score=83.15 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=70.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC--CC--------cccEEEe
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PL--------LREVKIG 163 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~--~~--------~~~v~i~ 163 (442)
++..||+|||| |.+|..+|..++..|+ ++.+++.+.+.-+.........+.+... .. ..++..
T Consensus 2 ~~I~~vaViGa-G~mG~~iA~~~a~~G~-----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~- 74 (186)
T d1wdka3 2 KDVKQAAVLGA-GIMGGGIAYQSASKGT-----PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP- 74 (186)
T ss_dssp CCCSSEEEECC-HHHHHHHHHHHHHTTC-----CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCC-----eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-
Confidence 45678999996 9999999999999886 3777544322111111111111111110 01 123555
Q ss_pred cCcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 164 ~~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+.+++++.|||+||-+.. +|.++-+++-++|.+++.+++++ +||..
T Consensus 75 ~~~~~~~~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS 120 (186)
T d1wdka3 75 TLSYGDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTS 120 (186)
T ss_dssp ESSSTTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCS
T ss_pred ccccccccccceeeeeec--------------chHHHHHHHHHHHHhhcCCCeeE--Eeccc
Confidence 456789999999998733 35788889999999998778876 77754
|
| >d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=2e-06 Score=82.67 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCHHHHH
Q 013466 338 AVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRK 403 (442)
Q Consensus 338 A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~~E~~ 403 (442)
|+.|+++|. +|++.++.++|.++|.+-++|+|.++.+||+|+++|+.++--...|.+.-..
T Consensus 184 a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~ 244 (308)
T d1obba2 184 HIPFIDALL-----NDNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVK 244 (308)
T ss_dssp HHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHH
T ss_pred HHHHHHHHH-----cCCCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHH
Confidence 777877777 4889999999999998899999999999999999999987523567765443
|
| >d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=4.9e-06 Score=78.66 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=51.8
Q ss_pred CchHHHHHHHHHHHHHhhcCCCCCcEEEEeeeeCCCccCCCCceEEEEEEEEcCCCceeeccCCCCCH
Q 013466 332 SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDD 399 (442)
Q Consensus 332 ss~~s~A~~i~~aI~~~l~~~d~~~v~~~sv~~~G~~ygip~dv~~svPv~lg~~Gv~~i~~~~~L~~ 399 (442)
..++..|+.|+++|. +|++.++.++|.++|.+-++|+|.++.+||.|+++|+.++--...+..
T Consensus 149 ~~~~e~a~~ii~ai~-----~~~~~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~vg~~~p~ 211 (278)
T d1vjta2 149 KLSGEQHIPFINAIA-----NNKRVRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKVEPDLTH 211 (278)
T ss_dssp CCCCCSHHHHHHHHH-----HCCCEEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCCCSCCCH
T ss_pred cchHHHHHHHHHHHh-----CCCCeEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeecCCCChH
Confidence 334567889988888 488899999999999888999999999999999999998742334443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.22 E-value=6.8e-06 Score=70.98 Aligned_cols=93 Identities=23% Similarity=0.164 Sum_probs=60.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |.+|+.++..|...|. +|.. + |++.+.++ .+.++. . +....++.+++++||+|
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~-----~V~~--~--d~~~~~~~-~a~~~~--~------~~~~~~~~~~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGH-----YLIG--V--SRQQSTCE-KAVERQ--L------VDEAGQDLSLLQTAKII 61 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHH-HHHHTT--S------CSEEESCGGGGTTCSEE
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC-----EEEE--E--ECCchHHH-HHHHhh--c------cceeeeecccccccccc
Confidence 69999995 9999999999998874 3544 3 55555544 222221 0 11224567899999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
|++.- ...+.++.+.+..+..++.+|+.+++-
T Consensus 62 ilavp----------------~~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 62 FLCTP----------------IQLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp EECSC----------------HHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred cccCc----------------Hhhhhhhhhhhhhhcccccceeecccc
Confidence 98742 233555556666655677788777653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.16 E-value=3.4e-06 Score=73.46 Aligned_cols=102 Identities=15% Similarity=0.015 Sum_probs=65.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc-CCCc----ccEEEecCcccccC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLL----REVKIGINPYELFE 171 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~-~~~~----~~v~i~~~~~eal~ 171 (442)
+||+|||| |.+|..++..|++.|. ++.++ ++++++++.....-.... .+.. .....+++..++++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 71 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQ-----SVLAW----DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK 71 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc
Confidence 69999996 9999999999999885 36663 445555553322111111 0111 23345677789999
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+||+||++... .-..++.++|+.+..++.+|+...|.
T Consensus 72 ~aD~iii~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 72 DADVILIVVPA----------------IHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp TCSEEEECSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred CCCEEEEEEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 99999997431 12455666677776677776655443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.02 E-value=4.5e-06 Score=74.51 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=53.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccC----CCcccEEEecCcccc
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF----PLLREVKIGINPYEL 169 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~----~~~~~v~i~~~~~ea 169 (442)
.+|.||+|||| |..|.++|..|...+. +|.|+ +++++.++.+...-.+..+ .+..++.++++..++
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~-----~V~l~----~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a 74 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCR-----EVCVW----HMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKA 74 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEE-----EEEEE----CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHH
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCC-----eEEEE----EecHHHHHHHhhcccccccccccccccccccchhhhhc
Confidence 45679999995 9999999999998763 36664 3444555433332222111 123578888888999
Q ss_pred cCCCcEEEEeC
Q 013466 170 FEDAEWALLIG 180 (442)
Q Consensus 170 l~dADiVIi~a 180 (442)
+++||+||++.
T Consensus 75 ~~~ad~iiiav 85 (189)
T d1n1ea2 75 YNGAEIILFVI 85 (189)
T ss_dssp HTTCSCEEECS
T ss_pred cCCCCEEEEcC
Confidence 99999999974
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.97 E-value=7.1e-06 Score=72.37 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=61.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC--Cc-ccEEEecCcccccCCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LL-REVKIGINPYELFEDA 173 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~--~~-~~v~i~~~~~eal~dA 173 (442)
|||+|||| |..|.++|..|+..+. ++.|+-. +.+++..+.....-.+..++ +. ..+..+.+..+++++|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~-----~V~l~~r--~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 72 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN-----EVRIWGT--EFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA 72 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-----EEEEECC--GGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----EEEEEEe--cccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc
Confidence 79999995 9999999999998773 4666422 22333333332211111111 11 2344556667899999
Q ss_pred cEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 174 DiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|+||++.. .+.++++.+++..+. ++..+++.+
T Consensus 73 d~Ii~avp----------------s~~~~~~~~~l~~~l-~~~~ii~~t 104 (180)
T d1txga2 73 EVVLLGVS----------------TDGVLPVMSRILPYL-KDQYIVLIS 104 (180)
T ss_dssp SEEEECSC----------------GGGHHHHHHHHTTTC-CSCEEEECC
T ss_pred chhhcccc----------------hhhhHHHHHhhcccc-ccceecccc
Confidence 99999743 234666777777765 455555554
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=3.7e-06 Score=72.06 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC-cccEEEecCcccccCCCcE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEW 175 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~-~~~v~i~~~~~eal~dADi 175 (442)
|||+|||| |.+|+.++..|...|. ++.+.. ++.+.... +....... .....+..+..+++.++|+
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-----~V~~~~----r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 66 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-----EVQGWL----RVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDL 66 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEEEC----SSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----ceEEEE----cCHHHhhh----hccccCCccccccccccchhhhhcccce
Confidence 79999996 9999999999999875 366643 22222211 11111011 1123445677899999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
||++.... -..+..+.+..+.+++..|+.+.|=++
T Consensus 67 iii~vka~----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 67 LLVTLKAW----------------QVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp EEECSCGG----------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred EEEeeccc----------------chHHHHHhhccccCcccEEeeccCccc
Confidence 99985422 134555566665557888999888554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.76 E-value=0.00019 Score=61.65 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|.||+|||+ |.+|.+++..|...+.. ..++.+ |++.+.++ .+.++.-. ....+........++|+
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~-----~~I~~~--D~~~~~~~-~a~~~~~~------~~~~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFK-----GKIYGY--DINPESIS-KAVDLGII------DEGTTSIAKVEDFSPDF 65 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCC-----SEEEEE--CSCHHHHH-HHHHTTSC------SEEESCGGGGGGTCCSE
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCC-----eEEEEE--ECChHHHH-HHHHhhcc------hhhhhhhhhhhcccccc
Confidence 458999995 99999999999998853 233333 55555544 33333211 12222334456678999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
||++.- .+.+.++...+..+.+++.+++-++.-
T Consensus 66 Iila~p----------------~~~~~~vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 66 VMLSSP----------------VRTFREIAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred ccccCC----------------chhhhhhhhhhhccccccccccccccc
Confidence 999843 233455555566655678888777754
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.68 E-value=6e-05 Score=67.32 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=67.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC--------------CcccEEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--------------LLREVKI 162 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~--------------~~~~v~i 162 (442)
|||+||| +|.||..+|..|+..|. ++.. + |.|.++.+.+- ....+ .......
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~-----~V~g--~--D~n~~~i~~ln----~g~~p~~e~~~~~~l~~~~~~~~~~~ 66 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGH-----EVIG--V--DVSSTKIDLIN----QGKSPIVEPGLEALLQQGRQTGRLSG 66 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHH----TTCCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCC-----cEEE--E--eCCHHHHHHhc----ccCCcccchhhhhhhhhhhccccccc
Confidence 7999999 59999999999999874 2444 3 34444444332 11111 1124677
Q ss_pred ecCcccccCCCcEEEEeCCcCCCC-CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEe-CCchh
Q 013466 163 GINPYELFEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCN 226 (442)
Q Consensus 163 ~~~~~eal~dADiVIi~ag~~~kp-g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivv-tNPvd 226 (442)
+++..+++++||+++++.+.|... +......+. .++.++...++.. .++..+++- |=|..
T Consensus 67 ~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~---~~~~~i~~~~~~~-~~~~liii~STv~pG 128 (202)
T d1mv8a2 67 TTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREK-SERHTVVVRSTVLPG 128 (202)
T ss_dssp ESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTC-CSCCEEEECSCCCTT
T ss_pred CCCHHHHHhhCCEEEEecCccccccccccchhhh---hhhhhhhheeecc-cCCcceeeccccCCc
Confidence 788889999999999998887533 222222222 3344444444543 355555543 34433
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.66 E-value=4.4e-05 Score=65.66 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|+.+|..|+..|. ++.. + |++.++++.... . .........+.+++||+|
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~-----~V~~--~--d~~~~~~~~~~~----~------~~~~~~~~~e~~~~~d~i 60 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--S--DRNPEAIADVIA----A------GAETASTAKAIAEQCDVI 60 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHH----T------TCEECSSHHHHHHHCSEE
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCC-----eEEE--E--eCCcchhHHHHH----h------hhhhcccHHHHHhCCCeE
Confidence 6999999 59999999999999885 2444 3 555555553321 1 123445667899999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
|++..
T Consensus 61 i~~v~ 65 (161)
T d1vpda2 61 ITMLP 65 (161)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 99743
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.51 E-value=6.8e-05 Score=63.80 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=46.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||++||+ |++|.+++..|...+- ..+.+ .|++.++++..+.++ .+... ++.++++++|+|
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~----~~i~v----~~r~~~~~~~l~~~~---------~~~~~-~~~~~v~~~Div 61 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGG----YRIYI----ANRGAEKRERLEKEL---------GVETS-ATLPELHSDDVL 61 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS----CEEEE----ECSSHHHHHHHHHHT---------CCEEE-SSCCCCCTTSEE
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC----CcEEE----EeCChhHHHHhhhhc---------ccccc-cccccccccceE
Confidence 69999995 9999999999887763 13555 367777766554432 13333 456778999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
|++.
T Consensus 62 ~lav 65 (152)
T d1yqga2 62 ILAV 65 (152)
T ss_dssp EECS
T ss_pred EEec
Confidence 9873
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00013 Score=62.08 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+|+||+|.||+-+...|+...-+.. ..++.+...++..+- .... ..........+.++++++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~---~~l~~~~ss~s~g~~------~~~~---~~~~~~~~~~~~~~~~~~Di 68 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDA---IRPVFFSTSQLGQAA------PSFG---GTTGTLQDAFDLEALKALDI 68 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGG---SEEEEEESSSTTSBC------CGGG---TCCCBCEETTCHHHHHTCSE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCe---eEEEEeecccccccc------cccc---CCceeeecccchhhhhcCcE
Confidence 56999999999999999987777654432 445544433321110 0000 00111223445678999999
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEE
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV 220 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~viv 220 (442)
+|++.+ ..+-+++++.+.+. +.+++||-
T Consensus 69 vF~a~~----------------~~~s~~~~~~~~~~-g~~~~VID 96 (146)
T d1t4ba1 69 IVTCQG----------------GDYTNEIYPKLRES-GWQGYWID 96 (146)
T ss_dssp EEECSC----------------HHHHHHHHHHHHHT-TCCCEEEE
T ss_pred EEEecC----------------chHHHHhhHHHHhc-CCCeeccc
Confidence 999876 35566677766663 34445533
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.27 E-value=0.00045 Score=58.74 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=57.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||||+|.+|+.+...|....-+. .+.+..+.......+. . .+...........+.+.++++|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p---~~~i~~~ss~~~~gk~----~-----~~~~~~~~~~~~~~~~~~~~~Dvv 68 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD---LIEPVFFSTSQIGVPA----P-----NFGKDAGMLHDAFDIESLKQLDAV 68 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG---GSEEEEEESSCCSSBC----C-----CSSSCCCBCEETTCHHHHTTCSEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC---ceEEEEeccccccccc----c-----ccCCcceeeecccchhhhccccEE
Confidence 699999999999999998777644332 2445444333221111 0 100011122334566789999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++.+ ..+-+++++.+.+. +.+++||-.+
T Consensus 69 F~alp----------------~~~s~~~~~~l~~~-g~~~~VIDlS 97 (147)
T d1mb4a1 69 ITCQG----------------GSYTEKVYPALRQA-GWKGYWIDAA 97 (147)
T ss_dssp EECSC----------------HHHHHHHHHHHHHT-TCCSEEEESS
T ss_pred EEecC----------------chHHHHHhHHHHHc-CCceEEEeCC
Confidence 99865 25566777777764 3555665444
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.24 E-value=0.00016 Score=61.60 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=46.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+|||+ |++|++++..|...+. ++.+. +++.++++.++..+. +....+..+.+++||+|
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~-----~i~v~----~r~~~~~~~l~~~~g---------~~~~~~~~~~~~~~dvI 61 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPH-----ELIIS----GSSLERSKEIAEQLA---------LPYAMSHQDLIDQVDLV 61 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSC-----EEEEE----CSSHHHHHHHHHHHT---------CCBCSSHHHHHHTCSEE
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCC-----eEEEE----cChHHhHHhhccccc---------eeeechhhhhhhcccee
Confidence 69999995 9999999999987652 35552 556666665544332 22334567889999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
|++.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9874
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.001 Score=58.48 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-----cCcccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-----~~~~ea 169 (442)
.|.||+|+||+|.+|++++..|+..|. ++.+. .++.+++. ... ....++... .+..++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-----~V~~~----~R~~~~~~-------~~~-~~~~~~~~gD~~d~~~l~~a 64 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGY-----EVTVL----VRDSSRLP-------SEG-PRPAHVVVGDVLQAADVDKT 64 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCGGGSC-------SSS-CCCSEEEESCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEEE----EcChhhcc-------ccc-ccccccccccccchhhHHHH
Confidence 467999999999999999999998874 24442 34444432 111 111122221 112567
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++|+||.+.|.......... +.+..+.+.+.+++.. --.+|.++
T Consensus 65 l~~~d~vi~~~g~~~~~~~~~~-----~~~~~~~l~~aa~~~~--v~r~i~~s 110 (205)
T d1hdoa_ 65 VAGQDAVIVLLGTRNDLSPTTV-----MSEGARNIVAAMKAHG--VDKVVACT 110 (205)
T ss_dssp HTTCSEEEECCCCTTCCSCCCH-----HHHHHHHHHHHHHHHT--CCEEEEEC
T ss_pred hcCCCEEEEEeccCCchhhhhh-----hHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 9999999998774321111111 2344555666666642 22455554
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.17 E-value=0.00083 Score=57.43 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
|+||+||| .|.+|+.+|..|+..+. ++..+ |++.++.+.. ... ......+..+.++++|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~-----~v~~~----d~~~~~~~~~----~~~------~~~~~~~~~e~~~~~di 60 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGY-----LLNVF----DLVQSAVDGL----VAA------GASAARSARDAVQGADV 60 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTC-----EEEEE----CSSHHHHHHH----HHT------TCEECSSHHHHHTSCSE
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCC-----eEEEE----ECchhhhhhh----hhh------hccccchhhhhccccCe
Confidence 67999999 69999999999999875 25453 4554554422 211 12333567899999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|+++..
T Consensus 61 ii~~v~ 66 (162)
T d3cuma2 61 VISMLP 66 (162)
T ss_dssp EEECCS
T ss_pred eeeccc
Confidence 988743
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.87 E-value=0.00091 Score=57.38 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..||.|||| |.+|..++..|...+. ..+.+ .+++.++++.++..+.... ....+..+.+.++|
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~----~~i~v----~nRt~~ka~~l~~~~~~~~-------~~~~~~~~~l~~~D 86 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGV----RAVLV----ANRTYERAVELARDLGGEA-------VRFDELVDHLARSD 86 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCC----SEEEE----ECSSHHHHHHHHHHHTCEE-------CCGGGHHHHHHTCS
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCC----cEEEE----EcCcHHHHHHHHHhhhccc-------ccchhHHHHhccCC
Confidence 4579999996 9999999999999875 23555 3777788877776654221 11245678899999
Q ss_pred EEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhH
Q 013466 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (442)
Q Consensus 175 iVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~ 227 (442)
+||.+.+.|. |-.++ +.++...+. ++. ....+++-++.|-|+
T Consensus 87 ivi~atss~~-~ii~~--------~~i~~~~~~-r~~-~~~~~iiDlavPr~v 128 (159)
T d1gpja2 87 VVVSATAAPH-PVIHV--------DDVREALRK-RDR-RSPILIIDIANPRDV 128 (159)
T ss_dssp EEEECCSSSS-CCBCH--------HHHHHHHHH-CSS-CCCEEEEECCSSCSB
T ss_pred EEEEecCCCC-ccccH--------hhhHHHHHh-ccc-CCCeEEEeecCCCCc
Confidence 9999766442 22222 222222221 111 134588889999654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00075 Score=60.72 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=63.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCcccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~ea 169 (442)
+||.|+||+|.||++++..|++.+.+.. |.+. .++....... ....+... .+..++
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~---v~~~----~R~~~~~~~~----------~~~~i~~~~~D~~~~~~~~~~ 77 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSK---VTLI----GRRKLTFDEE----------AYKNVNQEVVDFEKLDDYASA 77 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSE---EEEE----ESSCCCCCSG----------GGGGCEEEECCGGGGGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCE---EEEE----ecChhhhccc----------ccceeeeeeeccccccccccc
Confidence 5899999999999999999999886532 4331 2221111000 00011111 123577
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++++|+|+.++|... ......++...|.+....+++...+. +.. .++.+|
T Consensus 78 ~~~~d~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~-~fi~~S 127 (232)
T d2bkaa1 78 FQGHDVGFCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAG-GCK-HFNLLS 127 (232)
T ss_dssp GSSCSEEEECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred ccccccccccccccc-cccchhhhhhhcccccceeeeccccc-Ccc-ccccCC
Confidence 899999999887431 12234455667777778888877663 233 344444
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.72 E-value=0.005 Score=53.31 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCce-EEEeccccchh-hhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I-~L~l~d~d~~~-~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
|+||+|+||+|.+|.-+...|...+-+. | .|.-...+.+. +.+...--.+.. .....+....+......++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~e----i~~l~~~s~~~~aGk~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 73 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMT----ITALTVSAQSNDAGKLISDLHPQLKG---IVDLPLQPMSDVRDFSADV 73 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEE----EEEEEEETTCTTTTCBHHHHCGGGTT---TCCCBEEEESCGGGTCTTC
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCc----eEeeEeeccccccccccccccccccc---ccccccccchhhhhhhccc
Confidence 7899999999999999999999876542 2 22211111111 112211111110 0111334444555677899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++.+
T Consensus 74 dvvf~alp 81 (179)
T d2g17a1 74 DVVFLATA 81 (179)
T ss_dssp CEEEECSC
T ss_pred ceeecccc
Confidence 99999855
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.69 E-value=0.0032 Score=52.90 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
|||+||| .|.+|+.++..|.+.+. ++.. ++.+. .......+.... +. ....+++++||+|
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~-----~v~~--~~~~~-~~~~~~~~~~~~---------~~--~~~~e~~~~~diI 60 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGV-----EVVT--SLEGR-SPSTIERARTVG---------VT--ETSEEDVYSCPVV 60 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTC-----EEEE--CCTTC-CHHHHHHHHHHT---------CE--ECCHHHHHTSSEE
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCC-----eEEE--EcCch-hHHHHHhhhccc---------cc--ccHHHHHhhcCeE
Confidence 6999999 59999999999999874 2433 32221 122221211111 11 2356889999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
|++.
T Consensus 61 i~~v 64 (152)
T d1i36a2 61 ISAV 64 (152)
T ss_dssp EECS
T ss_pred EEEe
Confidence 9873
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0087 Score=55.74 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~dAD 174 (442)
.||.|+||+|.||++++..|+..|. +|...+.......+.+ .+.. ...++.+. ......+.++|
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~-----~V~~~d~~~~~~~~~~-------~~~~--~~~~~d~~~~~~~~~~~~~~d 67 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGH-----EVTVVDNFFTGRKRNV-------EHWI--GHENFELINHDVVEPLYIEVD 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCGGGT-------GGGT--TCTTEEEEECCTTSCCCCCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEeCCCcCCHHHH-------HHhc--CCCceEEEehHHHHHHHcCCC
Confidence 5999999999999999999998774 2333211111111111 1111 11123332 22346678999
Q ss_pred EEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 175 iVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+||.+|+...-+ ..+..+.+..|+.-...+.+.+.+. + ..+|.+|
T Consensus 68 ~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~--~k~I~~S 114 (312)
T d2b69a1 68 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-G--ARLLLAS 114 (312)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-T--CEEEEEE
T ss_pred EEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-C--CcEEEEE
Confidence 999988754311 1244567788999999999888875 2 3555554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.57 E-value=0.0071 Score=50.44 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.+.||+|||+.|.+|..++..|...|.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~ 34 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY 34 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC
Confidence 467999999669999999999999886
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.51 E-value=0.0023 Score=55.17 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=60.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.+|+.++..|+..|. .+..+ |++.++++....+-.... .. .......+..+.+.++|.+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~-----~V~v~----dr~~~~~~~l~~~~~~~~-~~-~~a~~~~~~~~~~~~~~~i 70 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGF-----VVCAF----NRTVSKVDDFLANEAKGT-KV-LGAHSLEEMVSKLKKPRRI 70 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----CSSTHHHHHHHHTTTTTS-SC-EECSSHHHHHHHBCSSCEE
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCC-----eEEEE----cCCHHHHHHHHHhccccc-cc-cchhhhhhhhhhhcccceE
Confidence 4799999 69999999999999885 25553 556666664433211100 00 0001112345778899999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|+.... .+.+.++...+.....++.++|..|+
T Consensus 71 i~~~~~---------------~~~v~~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 71 ILLVKA---------------GQAVDNFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp EECSCT---------------THHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred EEecCc---------------hHHHHHHHHHHHhccccCcEEEecCc
Confidence 887331 24455555555555556677777664
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.51 E-value=0.0021 Score=56.23 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=45.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCC------------cccEEEec
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL------------LREVKIGI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~------------~~~v~i~~ 164 (442)
|||+||| .|.||..+|..++ .|. ++.- + |.++++.+.+ .....+. ..+.+..+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~a-~g~-----~V~g--~--Din~~~v~~l----~~g~~p~~e~~l~~~~~~~~~~~~~~~ 65 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLLS-LQN-----EVTI--V--DILPSKVDKI----NNGLSPIQDEYIEYYLKSKQLSIKATL 65 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTS-----EEEE--E--CSCHHHHHHH----HTTCCSSCCHHHHHHHHHSCCCEEEES
T ss_pred CEEEEEC-CChhHHHHHHHHH-CCC-----cEEE--E--ECCHHHHHHH----hhcccccchhhHHHHhhhhhhhhhccc
Confidence 7999999 5999999987664 343 2444 3 3344444322 2111111 12455666
Q ss_pred CcccccCCCcEEEEeCCcCC
Q 013466 165 NPYELFEDAEWALLIGAKPR 184 (442)
Q Consensus 165 ~~~eal~dADiVIi~ag~~~ 184 (442)
+...+..++|+++++...|.
T Consensus 66 ~~~~~~~~~~ii~v~vpt~~ 85 (196)
T d1dlja2 66 DSKAAYKEAELVIIATPTNY 85 (196)
T ss_dssp CHHHHHHHCSEEEECCCCCE
T ss_pred hhhhhhhccccccccCCccc
Confidence 77888999999999866553
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.51 E-value=0.0035 Score=52.66 Aligned_cols=72 Identities=25% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||+|+||+|-+|..+...|.+.+. .. +.|..+....+..+. ..+ ...+..+..-+.+.+.++|+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~h-P~---~~l~~~~s~~~~Gk~---------i~~-~~~~~~~~~~~~~~~~~~d~ 67 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDF-PL---HRLHLLASAESAGQR---------MGF-AESSLRVGDVDSFDFSSVGL 67 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTC-CC---SCEEEEECTTTTTCE---------EEE-TTEEEECEEGGGCCGGGCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-Cc---eEEEEEeecccCCcc---------eee-ccccchhccchhhhhccceE
Confidence 58999999999999999999976542 11 233334333322110 110 11233444445678999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
++++.+
T Consensus 68 vf~a~p 73 (144)
T d2hjsa1 68 AFFAAA 73 (144)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 999865
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0017 Score=61.27 Aligned_cols=103 Identities=14% Similarity=0.045 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----EL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----ea 169 (442)
|||.|+||+|.||++++..|+..+. +|.+.+........... . +++.... ++.+ ..| ++ +.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~-----~V~~~d~~~~~~~~~~~-~---~~~~~~~---~~~~~~~Dl~d~~~l~~~ 68 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVIILDNLCNSKRSVLP-V---IERLGGK---HPTFVEGDIRNEALMTEI 68 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCTTHHH-H---HHHHHTS---CCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEEEECCCCcchhhHH-H---HHhhcCC---CCEEEEeecCCHHHHHHH
Confidence 7899999999999999999999874 24432211111111111 1 1111101 1222 122 22 34
Q ss_pred cC--CCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 170 FE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 170 l~--dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
++ ++|+||..|+.+.-+- .+..+.+..|+.-...+.+.+.++
T Consensus 69 ~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~ 114 (338)
T d1udca_ 69 LHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA 114 (338)
T ss_dssp HHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh
Confidence 55 6899999887542111 134567888999999999988886
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.42 E-value=0.0017 Score=55.06 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=38.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~ 153 (442)
|||+|||++|++|.++|..|+..|. +|.+. ++++++++..+.++....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-----~V~l~----~R~~e~~~~l~~~i~~~~ 48 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-----EIVVG----SRREEKAEAKAAEYRRIA 48 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-----EEEEE----ESSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC
Confidence 7999996679999999999999885 36663 667788887877776543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.40 E-value=0.0024 Score=55.87 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEe--cCcccccC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIG--INPYELFE 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~--~~~~eal~ 171 (442)
+-++|.|+||+|+||..++..|++.|. .+.+ .+++.++++..+..+.... ... ....+. ....+.+.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-----EVVL----CGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-----chhh----cccchHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhc
Confidence 457999999999999999999999885 2555 3666677776666554322 111 111221 12346789
Q ss_pred CCcEEEEeCCcC
Q 013466 172 DAEWALLIGAKP 183 (442)
Q Consensus 172 dADiVIi~ag~~ 183 (442)
++|+||.++|.+
T Consensus 92 ~iDilin~Ag~g 103 (191)
T d1luaa1 92 GAHFVFTAGAIG 103 (191)
T ss_dssp TCSEEEECCCTT
T ss_pred CcCeeeecCccc
Confidence 999999988753
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.35 E-value=0.0093 Score=55.49 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=98.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC--CCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC------cc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVL--GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN------PY 167 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~--~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~------~~ 167 (442)
|||.|+||+|.||++++..|++.+.- ..++.+.+..+........ +.... ...++.+ ..+ ..
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~-------~~~~~--~~~~~~~~~~d~~~~~~~~ 71 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN-------LAPVD--ADPRLRFVHGDIRDAGLLA 71 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG-------GGGGT--TCTTEEEEECCTTCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhH-------hhhhh--cCCCeEEEEeccccchhhh
Confidence 69999999999999999999998752 1111112211111111111 11111 0112332 121 24
Q ss_pred cccCCCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH----HHHHHCCCCCc
Q 013466 168 ELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAPSIPA 241 (442)
Q Consensus 168 eal~dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~----~~~k~s~~~p~ 241 (442)
....+.|+|+..|+.+..+. ....+.+..|......+.+.+.++ +. ..+|..+... +... -..+.++..|.
T Consensus 72 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~-~~~I~~Ss~~-~yg~~~~~~~~E~~~~~p~ 148 (322)
T d1r6da_ 72 RELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GV-GRVVHVSTNQ-VYGSIDSGSWTESSPLEPN 148 (322)
T ss_dssp HHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TC-CEEEEEEEGG-GGCCCSSSCBCTTSCCCCC
T ss_pred ccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CC-ceEEEeecce-eecCCCCCCCCCCCCCCCC
Confidence 56889999999887553222 233456778989999999888875 33 3455554321 0000 00011111111
Q ss_pred ceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEee--cCCCcccccccccccCcchh
Q 013466 242 KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN--HSTTQVPDFLNARINGLPVK 298 (442)
Q Consensus 242 kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~--HG~t~vp~~S~a~I~G~p~~ 298 (442)
--.| .+-+-.-.+-...+++.|++...++...|.|. +++..+|.|-..-+.|+++.
T Consensus 149 ~~Y~-~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~ 206 (322)
T d1r6da_ 149 SPYA-ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLP 206 (322)
T ss_dssp SHHH-HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEE
T ss_pred CHHH-HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcE
Confidence 1111 12222223344456677888888876677884 33556666655445566543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.33 E-value=0.0013 Score=57.77 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
++||.|+||+|.||++++..|+..+... .+..+ .++... +........ . .+.........+.|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~-----~v~~~--~r~~~~------~~~~~~~~~-~--d~~~~~~~~~~~~d~ 65 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLA-----KVIAP--ARKALA------EHPRLDNPV-G--PLAELLPQLDGSIDT 65 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCC-----EEECC--BSSCCC------CCTTEECCB-S--CHHHHGGGCCSCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeE-----EEEEE--eCCchh------hcccccccc-c--chhhhhhccccchhe
Confidence 4699999999999999999999888532 22211 111100 000000000 0 000011233456799
Q ss_pred EEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|+.++|..........++...|......++...++. .--.++.++
T Consensus 66 vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~v~~~i~~S 110 (212)
T d2a35a1 66 AFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM--GARHYLVVS 110 (212)
T ss_dssp EEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eeeeeeeeccccccccccccchhhhhhhcccccccc--ccccccccc
Confidence 999877554333344556677777777777776663 223455555
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.32 E-value=0.023 Score=48.46 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=32.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHH
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME 148 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~D 148 (442)
|||+||| .|.+|+.++..|+..+. ++..+ |++.++++.+...
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~-----~V~~~----dr~~~~~~~l~~~ 43 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGF-----KVAVF----NRTYSKSEEFMKA 43 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTC-----CEEEE----CSSHHHHHHHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCC-----eEEEE----ECCHHHHHHHHHc
Confidence 7999999 69999999999999885 35553 5666776655443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.036 Score=50.06 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=73.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
..|.|.||+++||..++..|++.|. .|.+ .++++++++..+.++.... + ++.. ..| +
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~-----~V~l----~~r~~~~l~~~~~~~~~~~-~---~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKS-----KLVL----WDINKHGLEETAAKCKGLG-A---KVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeeCCCHHHHHHH
Confidence 3566779999999999999999885 3555 3677888888888876422 1 2222 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCCC--cH----HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ----YELFEDAEWALLIGAKPRGPGM--ER----AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg~--~r----~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+..-|++|..+|....... .. .+.+..| .-..+...+.+.+. ..+.|++++-..
T Consensus 75 ~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~--~~G~Iv~isS~~ 145 (244)
T d1yb1a_ 75 AKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAA 145 (244)
T ss_dssp HHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred HHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc--CCceEEEeecch
Confidence 3457789999998886542221 11 2233334 34566677777773 578888887654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.039 Score=50.08 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=73.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~---------- 165 (442)
+.+.|+||+++||.+++..|+..|. .|++ .+++.++++..+.++.....+ .++.. ..|
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~-----~Vv~----~~r~~~~l~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~ 79 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGL-----KVVG----CARTVGNIEELAAECKSAGYP--GTLIPYRCDLSNEEDILSM 79 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCS--SEEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC--ceEEEEEccCCCHHHHHHH
Confidence 4688999999999999999999885 2555 356778888888877754311 12222 111
Q ss_pred ---cccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 ---PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ---~~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
-.+.+..-|++|..+|... ++- .+. ...+..| .-+.+.+.+.+.+....++.||+++-.
T Consensus 80 v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~ 151 (257)
T d1xg5a_ 80 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM 151 (257)
T ss_dssp HHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred HHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEech
Confidence 1344677899999887543 221 121 2233344 345566677766643246788888644
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.19 E-value=0.03 Score=50.77 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=72.3
Q ss_pred CEE-EEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC---------
Q 013466 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (442)
Q Consensus 97 ~KI-~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--------- 165 (442)
+|| .|.||+++||..++..|+..|. .|.+ .++++++++..+.++.+.. . ++. +..|
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~i~~~g-~---~~~~~~~Dv~~~~~v~~ 67 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-----AVAI----ADYNDATAKAVASEINQAG-G---HAVAVKVDVSDRDQVFA 67 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEeeCCCHHHHHH
Confidence 377 5669999999999999999885 2555 3667788888887776432 1 222 2222
Q ss_pred ----cccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 ----PYELFEDAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ----~~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..+.+..-|++|..||... +|- ++. ...++.|. .+.+...+.+.+. +..+.|++++.-
T Consensus 68 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~~g~Iv~isS~ 139 (255)
T d1gega_ 68 AVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKE-GHGGKIINACSQ 139 (255)
T ss_dssp HHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCG
T ss_pred HHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhh-ccccccccccch
Confidence 1344678999999887543 221 222 22344553 3455566666665 467888887754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.13 E-value=0.0048 Score=50.44 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=56.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-------cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-------PYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~-------~~ea 169 (442)
|||.|+|+ |.+|..++..|...|. ++.+ +|.++++++....++. . .+ +..+ ....
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~-----~v~v----id~d~~~~~~~~~~~~-~------~v-i~Gd~~~~~~l~~~~ 62 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGH-----DIVL----IDIDKDICKKASAEID-A------LV-INGDCTKIKTLEDAG 62 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCS-S------EE-EESCTTSHHHHHHTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----Ccce----ecCChhhhhhhhhhhh-h------hh-ccCcccchhhhhhcC
Confidence 79999996 9999999999998774 3544 3556666664433221 1 12 2211 1345
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchh
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd 226 (442)
+++||.++.+... -..|+ ++..++ +.+ +++-++..+.||..
T Consensus 63 i~~a~~vv~~t~~-----------d~~N~-~~~~~~---k~~-~~~~iI~~~~~~~~ 103 (132)
T d1lssa_ 63 IEDADMYIAVTGK-----------EEVNL-MSSLLA---KSY-GINKTIARISEIEY 103 (132)
T ss_dssp TTTCSEEEECCSC-----------HHHHH-HHHHHH---HHT-TCCCEEEECSSTTH
T ss_pred hhhhhhhcccCCc-----------HHHHH-HHHHHH---HHc-CCceEEEEecCHHH
Confidence 7899998886331 13343 222233 344 46656666777643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=96.08 E-value=0.041 Score=51.42 Aligned_cols=105 Identities=17% Similarity=0.062 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC------cccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN------PYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~------~~ea 169 (442)
-.||.|+||+|.||++++..|++.|. +.+.+ + ++..+...+.. +.+..........+..| ..++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~----~V~~~--v---R~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGY----KVRGT--A---RSASKLANLQK-RWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEE--E---SSHHHHHHHHH-HHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcC----EEEEE--e---CCchhHHHHHH-hhhccccccccEEEeccccchhhhhhh
Confidence 36999999999999999999999874 11223 2 22233222211 11111011011112111 2468
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+.++|.|+..++... ...+.......|..-...+.+.+.+.
T Consensus 81 ~~~~~~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~ 121 (342)
T d1y1pa1 81 IKGAAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAAT 121 (342)
T ss_dssp TTTCSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchhhhhhccccc-ccccccccccchhhhHHHHHHhhhcc
Confidence 999999998776432 23344555666777777777777774
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.06 E-value=0.0029 Score=55.21 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=46.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
.+++||+|+||+|-+|.-+...|...+. +.|..+..+.+..+.-+.+.. +.. . ...........+.++++
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~------~ei~~l~S~~~aG~~~~~~~~--~~~-~-~~~~~~~~~~~~~~~~~ 72 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQ------FRIKVMTADRKAGEQFGSVFP--HLI-T-QDLPNLVAVKDADFSNV 72 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSS------EEEEEEECSTTTTSCHHHHCG--GGT-T-SCCCCCBCGGGCCGGGC
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCC------ceEEEEeccccCCCccccccc--ccc-c-cccccchhhhhhhhccc
Confidence 3468999999999999999999998765 334334344443332222111 110 1 01111222345677899
Q ss_pred cEEEEeCC
Q 013466 174 EWALLIGA 181 (442)
Q Consensus 174 DiVIi~ag 181 (442)
|+|+++..
T Consensus 73 Dvvf~alp 80 (183)
T d2cvoa1 73 DAVFCCLP 80 (183)
T ss_dssp SEEEECCS
T ss_pred ceeeeccc
Confidence 99998743
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.91 E-value=0.045 Score=50.08 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=71.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
+.+.|.||+++||.+++..|+..|. .|.+. +++.++++..+.++...... ..++.. ..| +
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~i~~~~~~-~~~~~~~~~Dv~~~~~v~~~ 74 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGA-----QVTIT----GRNEDRLEETKQQILKAGVP-AEKINAVVADVTEASGQDDI 74 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHcCCC-CcceEEEEeeCCCHHHHHHH
Confidence 4788999999999999999999885 36563 56677888888877654211 112332 222 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCC-----CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 ----YELFEDAEWALLIGAKPRGPG-----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg-----~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+.+..-|++|..+|.....+ ++. ...+..|. .+.+...+.+.+ +..+.+++++
T Consensus 75 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~g~ii~~s 144 (274)
T d1xhla_ 75 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK--TKGEIVNVSS 144 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEECC
T ss_pred HHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc--cccccccchh
Confidence 234557899999888543221 122 12333442 355666677766 3577777765
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.89 E-value=0.022 Score=47.66 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=38.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEE
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVI 177 (442)
||++|| .|.+|..++..|+..+. ...+ +++.++......+. . . .....+.+.++|++|
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~------~~~~----~~~~~~~~~~~~~~---~-~-------~~~~~~~~~~~~~~i 59 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFP------TLVW----NRTFEKALRHQEEF---G-S-------EAVPLERVAEARVIF 59 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSC------EEEE----CSSTHHHHHHHHHH---C-C-------EECCGGGGGGCSEEE
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCC------EEEE----eCCHHHHHHHHHHc---C-C-------cccccccccceeEEE
Confidence 899999 69999999999997663 2222 22333333222221 1 0 123568888999998
Q ss_pred Ee
Q 013466 178 LI 179 (442)
Q Consensus 178 i~ 179 (442)
+.
T Consensus 60 ~~ 61 (156)
T d2cvza2 60 TC 61 (156)
T ss_dssp EC
T ss_pred ec
Confidence 86
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.85 E-value=0.072 Score=48.29 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=72.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~---------- 165 (442)
+.+.|+||+++||..++..|+..|. .|.+ .+++++.++..+.++.+.. .++. +..|
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~ 72 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGT-----AIAL----LDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGT 72 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4677889999999999999999885 2555 3567778887777776432 1222 2222
Q ss_pred ---cccccCCCcEEEEeCCcCC--CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 ---PYELFEDAEWALLIGAKPR--GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ---~~eal~dADiVIi~ag~~~--kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..+.+..-|++|..+|... .|- ++. ...+..|. -+.+...+.+.+. ..+.||+++-.
T Consensus 73 ~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~II~isS~ 143 (260)
T d1zema1 73 VDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASM 143 (260)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh--cCCCCCeeech
Confidence 1344678999999888543 221 222 22344443 3456666666663 57888888753
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.83 E-value=0.0019 Score=54.16 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=38.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEEEE
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiVIi 178 (442)
|++||+ |++|++++..|...+.. ..+ .+++.++++..+..+... ..+..++++.+|+||+
T Consensus 2 IgfIG~-G~mg~~l~~~L~~~~~~-----~~v----~~R~~~~~~~l~~~~~~~----------~~~~~~~~~~~DiVil 61 (153)
T d2i76a2 2 LNFVGT-GTLTRFFLECLKDRYEI-----GYI----LSRSIDRARNLAEVYGGK----------AATLEKHPELNGVVFV 61 (153)
T ss_dssp CEEESC-CHHHHHHHHTTC----C-----CCE----ECSSHHHHHHHHHHTCCC----------CCSSCCCCC---CEEE
T ss_pred EEEEeC-cHHHHHHHHHHHhCCCE-----EEE----EeCChhhhcchhhccccc----------ccchhhhhccCcEEEE
Confidence 689995 99999999887654321 223 267777777665543211 1346788999999998
Q ss_pred eC
Q 013466 179 IG 180 (442)
Q Consensus 179 ~a 180 (442)
+.
T Consensus 62 ~v 63 (153)
T d2i76a2 62 IV 63 (153)
T ss_dssp CS
T ss_pred ec
Confidence 84
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.053 Score=49.03 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
-+.+.|.||+++||.+++..|+..|. .|.+. +++.++++..+.++.+.. . .++. +..| +
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~~~~~~~~l~~~~-g--~~~~~~~~Dv~~~~~v~~ 72 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGC-----SVVVA----SRNLEEASEAAQKLTEKY-G--VETMAFRCDVSNYEEVKK 72 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-C--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHHh-C--CcEEEEEccCCCHHHHHH
Confidence 35788999999999999999999885 36663 556667776666665332 1 1222 2222 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+.+..-|++|..+|... +|- ++. ...+..| ..+.+...+.+.+. ..+.+|+++
T Consensus 73 ~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~i~ 141 (251)
T d1vl8a_ 73 LLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES--DNPSIINIG 141 (251)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC--SSCEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--ccccccccc
Confidence 234567999999888643 332 122 2234444 34566667777663 456666665
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.80 E-value=0.074 Score=47.97 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=70.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c--------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P-------- 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~-------- 166 (442)
.+.|+||+++||.+++..|+..|. .|.+ .+++++.++..+.++.... .++.. ..| +
T Consensus 12 valITGas~GIG~a~a~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~ 78 (251)
T d2c07a1 12 VALVTGAGRGIGREIAKMLAKSVS-----HVIC----ISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVI 78 (251)
T ss_dssp EEEEESTTSHHHHHHHHHHTTTSS-----EEEE----EESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHH
Confidence 455679999999999999999885 2555 3667788888888776432 12222 221 1
Q ss_pred ---ccccCCCcEEEEeCCcCCCCC---CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ---YELFEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~kpg---~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|...... .+. ...+..| ..+.+...+.+.+. ..+.||+++-.
T Consensus 79 ~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~ 147 (251)
T d2c07a1 79 NKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN--RYGRIINISSI 147 (251)
T ss_dssp HHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCEEEEEECCT
T ss_pred HHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC--CCeEEEEECCH
Confidence 344578999999887543222 121 2233444 33456666777764 57888888754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.78 E-value=0.046 Score=49.95 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=71.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
+.+.|+||+++||.+++..|+..|. .|.+ .++++++++..+.++...... ..++.. ..| +
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga-----~V~l----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvs~~~~v~~~ 75 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGA-----NVTI----TGRSSERLEETRQIILKSGVS-EKQVNSVVADVTTEDGQDQI 75 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHTTTCC-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-CCceEEEEccCCCHHHHHHH
Confidence 4678889999999999999999885 2666 356778888888888654311 122322 222 1
Q ss_pred ----ccccCCCcEEEEeCCcCCC-CC------CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 ----YELFEDAEWALLIGAKPRG-PG------MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~k-pg------~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+.+..-|++|..+|.... +- ++. ...+..|. .+.+...+.+.+. ..++|++.+
T Consensus 76 ~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (272)
T d1xkqa_ 76 INSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGEIVNVSS 147 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCccccccc
Confidence 3345678999998886432 11 111 12234443 3556666677663 566766665
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.75 E-value=0.0046 Score=58.59 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-----cCcccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-----INPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-----~~~~ea 169 (442)
+.|||.|+||+|.||++++..|+..+. .|.. +|...+.... .++. ..+.... ....+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-----~V~~--~d~~~~~~~~----~~~~------~~~~~~~D~~~~~~~~~~ 76 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH-----YVIA--SDWKKNEHMT----EDMF------CDEFHLVDLRVMENCLKV 76 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE--EESSCCSSSC----GGGT------CSEEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--EeCCCccchh----hhcc------cCcEEEeechhHHHHHHH
Confidence 468999999999999999999999874 2332 2111111000 0000 0112211 112446
Q ss_pred cCCCcEEEEeCCcCCCC---CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 170 FEDAEWALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 170 l~dADiVIi~ag~~~kp---g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++.|.||.+++..... ...-......|......+.....+.. - -.+|..+
T Consensus 77 ~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-v-k~~i~~S 130 (363)
T d2c5aa1 77 TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-I-KRFFYAS 130 (363)
T ss_dssp HTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-C-SEEEEEE
T ss_pred hhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhhC-c-ccccccc
Confidence 78999999887643211 12234456677777777877777742 2 2455444
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=95.69 E-value=0.011 Score=54.67 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=62.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c----cccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P----YELF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~----~eal 170 (442)
||.|+||+|.||++++..|++.|. +.+.++.+......+.++ .+... + ++.+. .| + .+++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~----~V~~id~~~~~~~~~~~~----~~~~~--~---~~~~i~~Di~~~~~l~~~~ 68 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI----DLIVFDNLSRKGATDNLH----WLSSL--G---NFEFVHGDIRNKNDVTRLI 68 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCCSTTHHHHHH----HHHTT--C---CCEEEECCTTCHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC----EEEEEECCCcccchhHHH----Hhhcc--C---CcEEEEcccCCHHHHHHHH
Confidence 899999999999999999999874 122332111111111111 12211 1 22221 12 1 3344
Q ss_pred CC--CcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 ED--AEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ~d--ADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++ .|+||.+|+....+. .+-.+....|..-...+.+...+. +..-.++..|
T Consensus 69 ~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS 123 (338)
T d1orra_ 69 TKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSS 123 (338)
T ss_dssp HHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEE
T ss_pred HhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccc
Confidence 44 399999887543221 133566778888888888888875 3444444444
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.62 E-value=0.0046 Score=53.70 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-e----cCcccc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-G----INPYEL 169 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~----~~~~ea 169 (442)
.|.+|.|+||+|.||++++..|+..+. .+.+..+ .++.+.+. ++.... ++.. - ....++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~-----~v~v~~~--~R~~~~~~----~~~~~~-----~~~~~d~~~~~~~~~~ 65 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSD-----KFVAKGL--VRSAQGKE----KIGGEA-----DVFIGDITDADSINPA 65 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTT-----TCEEEEE--ESCHHHHH----HTTCCT-----TEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-----cEEEEEE--cCCHHHHH----hccCCc-----EEEEeeeccccccccc
Confidence 477999999999999999999998874 1333222 33333322 122111 1111 1 112567
Q ss_pred cCCCcEEEEeCCcCCC--C-------C------CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHH
Q 013466 170 FEDAEWALLIGAKPRG--P-------G------MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (442)
Q Consensus 170 l~dADiVIi~ag~~~k--p-------g------~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k 234 (442)
++++|.||..++.... + . .........|..-.+.+........ .. .....+... .
T Consensus 66 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~~~-~------- 135 (252)
T d2q46a1 66 FQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VK-HIVVVGSMG-G------- 135 (252)
T ss_dssp HTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CS-EEEEEEETT-T-------
T ss_pred cccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-cc-ccccccccc-c-------
Confidence 8999999987764211 0 0 0122233444444455555444432 22 222222111 0
Q ss_pred HCCCCCcceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeec
Q 013466 235 NAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH 279 (442)
Q Consensus 235 ~s~~~p~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~H 279 (442)
..+..+..............+...+....|++..-++.-.++|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~ 180 (252)
T d2q46a1 136 TNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE 180 (252)
T ss_dssp TCTTCGGGGGGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSC
T ss_pred CCCCcccccccccchhhhhhhhhhhhhcccccceeecceEEECCC
Confidence 011122222333334445556666677778776666544566754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.57 E-value=0.061 Score=48.55 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=71.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
+.+.|.||+++||..++..|+..|. .|.+. +++.+.++..+.++... .++.. ..| +
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~ 72 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGA-----KVMIT----GRHSDVGEKAAKSVGTP-----DQIQFFQHDSSDEDGWTKL 72 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhCCC-----CcEEEEEccCCCHHHHHHH
Confidence 4677889999999999999999885 36663 55667777776666421 12222 122 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-CCC--CcHH---hHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ----YELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~-kpg--~~r~---dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+..-|++|..+|... ++- ++.. +.++.|. ...+...+.+.+. +..+.||+++...
T Consensus 73 ~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~-~~gg~Ii~isS~~ 144 (251)
T d1zk4a1 73 FDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNK-GLGASIINMSSIE 144 (251)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEEECCGG
T ss_pred HHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhc-CCCCceEeeeccc
Confidence 344667899999887542 331 2222 2344443 3456666777664 3567888887543
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=95.53 E-value=0.014 Score=54.85 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=61.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc-------cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------YE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~-------~e 168 (442)
||||.|+||+|.||++++..|...+. .+.+..+| +.+...-. ..+... ...++....++ .+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~-----~v~v~~~d-~~~~~~~~---~~~~~~---~~~~i~~~~~Di~d~~~~~~ 69 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHP-----DVHVTVLD-KLTYAGNK---ANLEAI---LGDRVELVVGDIADAELVDK 69 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCT-----TCEEEEEE-CCCTTCCG---GGTGGG---CSSSEEEEECCTTCHHHHHH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCC-----CeEEEEEe-CCCccccH---HHHHHh---hcCCeEEEEccCCCHHHHHH
Confidence 78999999999999999999998774 12222222 10000000 001111 11233332222 45
Q ss_pred ccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
.+++.|.|+..|+.....+. +..+.+..|+.-...+.....+.
T Consensus 70 ~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~ 114 (346)
T d1oc2a_ 70 LAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY 114 (346)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc
Confidence 67889998888765432221 23456788888888888887775
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.51 E-value=0.079 Score=47.86 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=71.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c--------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P-------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~-------- 166 (442)
+++.|.||+++||.+++..|+..|. .|.+. +++.+.++..+.++.... ..+..| +
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~~------~~~~~Dvt~~~~v~~~~ 70 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGA-----RVAIA----DINLEAARATAAEIGPAA------CAIALDVTDQASIDRCV 70 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTE-----EEEEE----ESCHHHHHHHHHHHCTTE------EEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhCCce------EEEEeeCCCHHHHHHHH
Confidence 4678889999999999999999885 25553 567778887777774221 111111 1
Q ss_pred ---ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ---YELFEDAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+..-|++|..+|... +|- ++. ...+..|. -+.+..++.+.+. +..+.|++++--.
T Consensus 71 ~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~-~~~g~Iv~isS~~ 141 (256)
T d1k2wa_ 71 AELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAG-GRGGKIINMASQA 141 (256)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSCEEEEEECCGG
T ss_pred HHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHh-ccCCccccccchh
Confidence 234567899999888643 221 222 23455553 3455666666654 3568888887543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.50 E-value=0.0045 Score=53.89 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
|+||+|+||+|-+|.-++..|...+. +.+..+-.+.+..+.-+ ++.... .....+. .+..+..+|+|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~------~ei~~l~s~~~aG~~i~---~~~p~~---~~~~~~~~~~~~~~~~~~d 68 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE------AKITYLSSRTYAGKKLE---EIFPST---LENSILSEFDPEKVSKNCD 68 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT------EEEEEEECSTTTTSBHH---HHCGGG---CCCCBCBCCCHHHHHHHCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC------ceEEEeeccccCCCccc---ccCchh---hccccccccCHhHhccccc
Confidence 78999999999999999999987664 44443434433222111 111110 1111222 23344557899
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+++..
T Consensus 69 vvf~a~p 75 (176)
T d1vkna1 69 VLFTALP 75 (176)
T ss_dssp EEEECCS
T ss_pred eEEEccc
Confidence 9998754
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.03 Score=52.91 Aligned_cols=116 Identities=9% Similarity=0.020 Sum_probs=60.7
Q ss_pred EEE-EEcCCCchHHHHHHHHHHcCCCCCCCceEEEe-ccccchhhhHHHHHHHHhcccCCCcccEEEecCc-------cc
Q 013466 98 NIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------YE 168 (442)
Q Consensus 98 KI~-IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l-~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~-------~e 168 (442)
||+ |+||+|.||++++..|+..|. +|...+ .....+.++++....+.. ....++.+..++ .+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~ 72 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-----EVHGIKRRASSFNTERVDHIYQDPH----TCNPKFHLHYGDLSDTSNLTR 72 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEECC-------------------------CCEEECCCCSSCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-----EEEEEECCCcccchhhHHHHHhhhh----hcCCCeEEEEeecCCHHHHHH
Confidence 455 999999999999999999874 232211 000012222222211111 111244443222 23
Q ss_pred ccCC--CcEEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCC-CeEEEEeC
Q 013466 169 LFED--AEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVG 222 (442)
Q Consensus 169 al~d--ADiVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p-~a~vivvt 222 (442)
.+++ .|+|+.+++.... ...+....++.|+.-...+.+.+++++.. ...+|.+|
T Consensus 73 ~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S 131 (357)
T d1db3a_ 73 ILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131 (357)
T ss_dssp HHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 4444 4999998876432 23345556788888888888888775322 33566544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.071 Score=47.88 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE---ecCcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---GINPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i---~~~~~eal~d 172 (442)
-+++.|+||+++||.+++..|+..|. .|.+ .+++++.++..+.++.... .+..+++- .....+.+..
T Consensus 7 GK~~lITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~l~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 7 GRRVLVTGAGKGIGRGTVQALHATGA-----RVVA----VSRTQADLDSLVRECPGIE-PVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHSTTCE-EEECCTTCHHHHHHHHTTCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EECCHHHHHHHHHhcCCCe-EEEEeCCCHHHHHHHHHHhCC
Confidence 35888999999999999999999885 2555 3667777877776665322 10000000 0012345778
Q ss_pred CcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 173 AEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 173 ADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
-|++|..+|... +|- ++. ...+..|. .+.+...+.+.+. ...+.|++++--
T Consensus 77 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~Ii~isS~ 137 (244)
T d1pr9a_ 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIAR-GVPGAIVNVSSQ 137 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred ceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHh-CCcceEeecccc
Confidence 999999887643 221 222 22344443 3456666655543 356888887753
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.48 E-value=0.002 Score=54.40 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec------Ccccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------NPYEL 169 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~------~~~ea 169 (442)
.+||.|||| |.+|.+++..|...|. .|.+ .|++.++++..+..+... ..... ...+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~-----~V~v----~dr~~~~a~~l~~~~~~~-------~~~~~~~~~~~~~~~~ 64 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI-----KVTV----ACRTLESAKKLSAGVQHS-------TPISLDVNDDAALDAE 64 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC-----EEEE----EESCHHHHHHHHTTCTTE-------EEEECCTTCHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE----EECChHHHHHHHhccccc-------ccccccccchhhhHhh
Confidence 358999996 9999999999999875 2666 477777777554433211 11211 12455
Q ss_pred cCCCcEEEEeC
Q 013466 170 FEDAEWALLIG 180 (442)
Q Consensus 170 l~dADiVIi~a 180 (442)
+...|+++.+.
T Consensus 65 i~~~~~~i~~~ 75 (182)
T d1e5qa1 65 VAKHDLVISLI 75 (182)
T ss_dssp HTTSSEEEECS
T ss_pred hhccceeEeec
Confidence 78888888653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.47 E-value=0.12 Score=46.50 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=71.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCcccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~ea 169 (442)
+.+.|.||+++||.+++..|+..|. .|.+ .++++++++..+.++.+....+..+++-. ..-.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~V~~----~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGA-----KVVF----GDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 4667789999999999999999885 2555 36677788878777754321100000000 001344
Q ss_pred cCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 FEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 l~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+..-|++|..+|... ++- ++. .+.+..| ..+.+...+.+.+. ..+.||+++-..
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 141 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSIE 141 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc--CcceEEeccccc
Confidence 667899999888643 222 222 2234444 33455566677763 578888887654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.46 E-value=0.04 Score=52.29 Aligned_cols=117 Identities=16% Similarity=0.101 Sum_probs=63.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe-cc-cc---chhhhHHHHHHHHhcccCC----CcccEEEecCc-
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LG-SE---RSLQALEGVAMELEDSLFP----LLREVKIGINP- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l-~d-~d---~~~~~l~g~a~DL~~~~~~----~~~~v~i~~~~- 166 (442)
|||.|+||+|.||++++..|+..+-. .|...+ +. .. ...+..+.....+...... ....+.+..++
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~----~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNH----SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDV 78 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCC----EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCT
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCC----EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcc
Confidence 59999999999999999999863321 233321 00 00 0112223333333322211 11233332222
Q ss_pred ---------ccccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhhhCCCeEE
Q 013466 167 ---------YELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKV 218 (442)
Q Consensus 167 ---------~eal~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~a~p~a~v 218 (442)
.+..+++|+|+.+|+....+.. ........|......+.....+. +....+
T Consensus 79 ~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~ 140 (383)
T d1gy8a_ 79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKII 140 (383)
T ss_dssp TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred cCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCcccc
Confidence 1234678999999875432211 23345667888888888888875 344433
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.32 E-value=0.077 Score=47.87 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=51.5
Q ss_pred EE-EEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC----------
Q 013466 98 NI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---------- 165 (442)
Q Consensus 98 KI-~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~---------- 165 (442)
|| .|.||+++||.+++..|+..|. .|.+. +++++.++..+.++.+.. .++.. ..|
T Consensus 3 KValITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvs~~~~v~~~ 69 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL-----RVFVC----ARGEEGLRTTLKELREAG----VEADGRTCDVRSVPEIEAL 69 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC----CcEEEEEeecCCHHHHHHH
Confidence 56 5779999999999999999885 25553 567788888888776432 12222 222
Q ss_pred ---cccccCCCcEEEEeCCcCC
Q 013466 166 ---PYELFEDAEWALLIGAKPR 184 (442)
Q Consensus 166 ---~~eal~dADiVIi~ag~~~ 184 (442)
..+.+..-|++|..||...
T Consensus 70 ~~~~~~~~g~iDilVnnAG~~~ 91 (257)
T d2rhca1 70 VAAVVERYGPVDVLVNNAGRPG 91 (257)
T ss_dssp HHHHHHHTCSCSEEEECCCCCC
T ss_pred HHHHHHHhCCCCEEEecccccC
Confidence 1345678999999988654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.031 Score=47.52 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..+|.|+|| |+++.++++.|...+. .|.+ .+|+.++++.++..+.+.. .+.....+.....++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~-----~i~I----~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (170)
T d1nyta1 17 PGLRILLIGA-GGASRGVLLPLLSLDC-----AVTI----TNRTVSRAEELAKLFAHTG-----SIQALSMDELEGHEFD 81 (170)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----ECSSHHHHHHHHHHTGGGS-----SEEECCSGGGTTCCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHhcccce-----EEEe----ccchHHHHHHHHHHHhhcc-----cccccccccccccccc
Confidence 3469999995 9999999999999774 2554 3778788887766554322 3444333334557899
Q ss_pred EEEEeC
Q 013466 175 WALLIG 180 (442)
Q Consensus 175 iVIi~a 180 (442)
+||.+-
T Consensus 82 liIN~T 87 (170)
T d1nyta1 82 LIINAT 87 (170)
T ss_dssp EEEECC
T ss_pred eeeccc
Confidence 999863
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.28 E-value=0.13 Score=46.67 Aligned_cols=112 Identities=8% Similarity=0.051 Sum_probs=70.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------- 166 (442)
+.+.|+||+++||..++..|+..|. .|.+ .++++++++..+.++.... .+. +..| +
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~~~~~v~~~ 72 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGA-----KVVI----ADIADDHGQKVCNNIGSPD-----VISFVHCDVTKDEDVRNL 72 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHCCTT-----TEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhcCCC-----ceEEEEccCCCHHHHHHH
Confidence 4677889999999999999999885 2555 3567788887877775321 121 1112 1
Q ss_pred ----ccccCCCcEEEEeCCcC-CCCC----CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKP-RGPG----MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~-~kpg----~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|.. ..|. ++. ...++.|. -+.+...+.+.+. ..+.+++++.-
T Consensus 73 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~ii~iss~ 144 (268)
T d2bgka1 73 VDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASI 144 (268)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG--TCEEEEEECCG
T ss_pred HHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc--CCCCccccccc
Confidence 24456889999988753 2321 221 22344453 3455666666663 46777777654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.26 E-value=0.13 Score=46.54 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=70.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------- 166 (442)
+.+.|.||+++||..++..|+..|. .|.+. +++.++++....++...... .++. +..| +
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~l~~~~~~~~~~~~~--~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGA-----KLSLV----DVSSEGLEASKAAVLETAPD--AEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHCTT--CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhhCCC--CeEEEEeccCCCHHHHHHH
Confidence 4677889999999999999999885 36663 56667777666666543211 1222 2222 1
Q ss_pred ----ccccCCCcEEEEeCCcC--CCCC--CcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ----YELFEDAEWALLIGAKP--RGPG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~--~kpg--~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+..-|++|..||.. .+|- ++.. ..++.| ..+.+...+.+.+. ..+.||+++-..
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 145 (258)
T d1iy8a_ 74 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASVG 145 (258)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCGG
T ss_pred HHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh--cCCCCcccccHh
Confidence 33456899999998853 2331 2221 234444 33455556666663 467777777543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0027 Score=59.70 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=59.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-c---Cc---c-c
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-I---NP---Y-E 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~---~~---~-e 168 (442)
|||.|+||+|.||++++..|+..+.. +|.. + |+...... .+... .++++. . +. . .
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~----~V~~--l--d~~~~~~~----~~~~~-----~~~~~i~~Di~~~~~~~~~ 63 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHY----EVYG--L--DIGSDAIS----RFLNH-----PHFHFVEGDISIHSEWIEY 63 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC----EEEE--E--ESCCGGGG----GGTTC-----TTEEEEECCTTTCSHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC----EEEE--E--eCCCcchh----hhccC-----CCeEEEECccCChHHHHHH
Confidence 69999999999999999999887742 1322 2 22111111 01111 122221 1 11 2 3
Q ss_pred ccCCCcEEEEeCCcCCCCCC--cHHhHHHHHHHHHHHHHHHHHhh
Q 013466 169 LFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 169 al~dADiVIi~ag~~~kpg~--~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
.++++|+||..|+...-+.. .-...+..|......+.+.+.+.
T Consensus 64 ~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 108 (342)
T d2blla1 64 HVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 108 (342)
T ss_dssp HHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHhCCCccccccccccccccccCCccccccccccccccccccccc
Confidence 67789999998875432221 22356778888889998888775
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.092 Score=47.47 Aligned_cols=113 Identities=10% Similarity=0.070 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
-+++.|.||+++||.+++..|+..|. .|.+. ++++++++..+.++.... . ++. +..| +
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~~~~~~~~l~~~g-~---~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGA-----SVVVS----DINADAANHVVDEIQQLG-G---QAFACRCDITSEQELSA 77 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTC-----EEEEE----ESCHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHcC-C---cEEEEEccCCCHHHHHH
Confidence 45788999999999999999999885 25553 566778887777776432 1 222 2222 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC-CcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG-MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg-~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+..-|++|..+|... ++- ++.. ..+..| ..+.+...+.+.+. ..+.||+++-
T Consensus 78 ~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Ii~isS 146 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN--GGGVILTITS 146 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECC
T ss_pred HHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc--cccccccccc
Confidence 344578999999888643 222 2222 233444 33566677777774 4677777764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.23 E-value=0.033 Score=47.31 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..||.|+|| |+++.++++.|...+. ..|.+ .+|+.++++.++..+... .+ + .....++|
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~----~~I~I----~nR~~~ka~~L~~~~~~~--------~~--~-~~~~~~~D 75 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGF----EKLKI----YARNVKTGQYLAALYGYA--------YI--N-SLENQQAD 75 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTC----CCEEE----ECSCHHHHHHHHHHHTCE--------EE--S-CCTTCCCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC----CEEEE----ecccHHHHHHHHHhhhhh--------hh--h-cccccchh
Confidence 4568999995 9999999999999885 23666 377778777665544321 11 1 12235789
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||.+-.
T Consensus 76 liINaTp 82 (167)
T d1npya1 76 ILVNVTS 82 (167)
T ss_dssp EEEECSS
T ss_pred hheeccc
Confidence 9998643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.09 Score=47.13 Aligned_cols=118 Identities=13% Similarity=0.010 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe---cCcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~---~~~~eal~d 172 (442)
-+++.|+||+++||..++..|+..|. .|.+. +++++.++..+.++..... +..+++-. ....+.+..
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~~~-~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGA-----KVVAV----TRTNSDLVSLAKECPGIEP-VCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHSTTCEE-EECCTTCHHHHHHHHTTCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHhcCCCeE-EEEeCCCHHHHHHHHHHcCC
Confidence 35788999999999999999999885 25553 5666777766666543221 00000000 011344678
Q ss_pred CcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 173 AEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 173 ADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
-|++|..+|... +|- ++. ...++.|. .+.+...+.+.+. +..+.+|+++-.
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~-~~~g~ii~isS~ 135 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINR-GVPGSIVNVSSM 135 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECCG
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhh-cccCcccccchh
Confidence 999999888643 221 222 22344443 3445556655443 356777777754
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.18 E-value=0.15 Score=46.10 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c-------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~------- 166 (442)
-+++.|+||+++||.+++..|+..|. .|.+. +++.++++..+.++..... .+..| +
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~~~~~~~~~~~~~~------~~~~Dv~~~~~v~~~ 69 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGA-----RVVLA----DVLDEEGAATARELGDAAR------YQHLDVTIEEDWQRV 69 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTGGGEE------EEECCTTCHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhCCceE------EEEcccCCHHHHHHH
Confidence 35789999999999999999999885 25553 5666777766666542210 11111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-CCC--Cc---HHhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 ----YELFEDAEWALLIGAKPR-GPG--ME---RAGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~-kpg--~~---r~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+..-|++|..||... ++- ++ -...+..|. -+.+...+.+.+. ..+.||+++--.
T Consensus 70 ~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~--~~G~II~isS~~ 140 (254)
T d1hdca_ 70 VAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSAA 140 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc--CCCeecccccch
Confidence 234568999999888643 221 11 223445553 3556666666663 578888888543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.15 Score=45.58 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=70.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCcccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~ea 169 (442)
+.+.|.||+++||.+++..|+..|. .|.+ .+++++.++..+.++......+..+++-. ....+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~-----~Vv~----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGA-----KVIG----TATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEE----EeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 3566779999999999999999885 2555 36677788877766642210000000000 001344
Q ss_pred cCCCcEEEEeCCcCCCCC---CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 FEDAEWALLIGAKPRGPG---MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg---~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+..-|++|..||...... .+. ...+..| ..+.+...+.+.+. ..+.||+++-.
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~II~isS~ 138 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK--RHGRIITIGSV 138 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc--CCCEeeeecch
Confidence 568999999887643222 121 2234444 34566677777763 57888888853
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.07 E-value=0.17 Score=45.12 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=73.2
Q ss_pred EE-EEEcCCCchHHHHHHHHHHcCCC--CCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--------
Q 013466 98 NI-AVSGAAGMIANHLLFKLAAGEVL--GPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN-------- 165 (442)
Q Consensus 98 KI-~IIGA~G~VG~~la~~L~~~~l~--~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~-------- 165 (442)
+| .|.||+++||.+++..|+..|.- ..+..+.+ .+++.+.++..+.++.... . ++. +..|
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~----~~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dvt~~~~v~ 73 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVL----SSRTAADLEKISLECRAEG-A---LTDTITADISDMADVR 73 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEE----EESCHHHHHHHHHHHHTTT-C---EEEEEECCTTSHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEE----EeCCHHHHHHHHHHHHhcC-C---cEEEEEecCCCHHHHH
Confidence 54 57799999999999999998852 11112333 3667788888888876432 1 222 1111
Q ss_pred -----cccccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 166 -----PYELFEDAEWALLIGAKPRG-PG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 166 -----~~eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
..+.+..-|++|..+|.... |- ++- ...+..| .-+.+...+.+.+. ..+.+++++.-.
T Consensus 74 ~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Ii~isS~~ 146 (240)
T d2bd0a1 74 RLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ--HSGHIFFITSVA 146 (240)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc--CCCceEEEechh
Confidence 13456789999998886432 21 111 2234445 34567777777773 578888887543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.07 E-value=0.1 Score=47.20 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=67.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--c--------
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P-------- 166 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~-------- 166 (442)
.+.|+||+++||..++..|+..|. .|.+ .++++++++..+.++...... ..++... .| +
T Consensus 7 valVTGas~GIG~aia~~la~~Ga-----~V~~----~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~Dvt~~~~v~~~~ 76 (264)
T d1spxa_ 7 VAIITGSSNGIGRATAVLFAREGA-----KVTI----TGRHAERLEETRQQILAAGVS-EQNVNSVVADVTTDAGQDEIL 76 (264)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTCC-GGGEEEEECCTTSHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCCC-cCceEEEEccCCCHHHHHHHH
Confidence 556779999999999999999885 2555 366778888888888654311 1223322 22 1
Q ss_pred ---ccccCCCcEEEEeCCcCC-----CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 167 ---YELFEDAEWALLIGAKPR-----GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~-----kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+.+..-|++|..+|... ++. ++. ...+..| ..+.+...+.+++. ..++|++.+
T Consensus 77 ~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~~S 147 (264)
T d1spxa_ 77 STTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNISS 147 (264)
T ss_dssp HHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cCcceeeee
Confidence 334567999999887532 111 121 1233444 33556666777663 456666555
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.027 Score=50.36 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=66.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-+++.|+||+++||.+++..|+..|. .|.+. +++++.++.....+..+ .+...+ ....+.+..-|+
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~--Dv~~~~---~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGA-----EVTIC----ARNEELLKRSGHRYVVC--DLRKDL---DLLFEKVKEVDI 69 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHTCSEEEEC--CTTTCH---HHHHHHSCCCSE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHhcCCcEEEc--chHHHH---HHHHHHhCCCcE
Confidence 35899999999999999999999885 25553 55555554221110000 000000 012466788999
Q ss_pred EEEeCCcCCCCC---CcHH---hHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 176 ALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 176 VIi~ag~~~kpg---~~r~---dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+|..+|.+.... ++.. ..++.|. .+.+...+.+++. ..+.+|+++.-
T Consensus 70 lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--~~G~ii~i~S~ 126 (234)
T d1o5ia_ 70 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK--GWGRIVAITSF 126 (234)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred EEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc--ccccccccccc
Confidence 999988664221 2222 2234443 3566667777763 56777777653
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.03 E-value=0.079 Score=44.29 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=44.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.||+|+||+|-+|..+...|...+. . .+.+..+..+++.. . .+.+ ............+++.++|++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p---~~~l~~~~s~~s~G----~--~~~~----~~~~~~~~~~~~~~~~~~d~~ 67 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-P---IDKIRYLASARSAG----K--SLKF----KDQDITIEETTETAFEGVDIA 67 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-C---EEEEEEEECGGGTT----C--EEEE----TTEEEEEEECCTTTTTTCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-C---ceEEEEeccccccc----c--cccc----cCCcccccccchhhhhhhhhh
Confidence 4899999999999999998887752 1 13454443332211 1 0111 111233344556788999999
Q ss_pred EEeCC
Q 013466 177 LLIGA 181 (442)
Q Consensus 177 Ii~ag 181 (442)
+++.+
T Consensus 68 f~~~~ 72 (154)
T d2gz1a1 68 LFSAG 72 (154)
T ss_dssp EECSC
T ss_pred hhccC
Confidence 99865
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.01 E-value=0.028 Score=48.03 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+..+|.|+|| |+++.++++.|..++- .|.+ .+|+.++++.++..+.... ++.....+...+.++|
T Consensus 17 ~~k~vlIlGa-GGaarai~~aL~~~~~-----~i~I----~nR~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~d 81 (171)
T d1p77a1 17 PNQHVLILGA-GGATKGVLLPLLQAQQ-----NIVL----ANRTFSKTKELAERFQPYG-----NIQAVSMDSIPLQTYD 81 (171)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTTC-----EEEE----EESSHHHHHHHHHHHGGGS-----CEEEEEGGGCCCSCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccCc-----eeee----ccchHHHHHHHHHHHhhcc-----ccchhhhccccccccc
Confidence 4569999995 9999999999987541 3555 3788888888887775321 3333333445688999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+||.+..
T Consensus 82 iiIN~tp 88 (171)
T d1p77a1 82 LVINATS 88 (171)
T ss_dssp EEEECCC
T ss_pred eeeeccc
Confidence 9999743
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.14 Score=47.36 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCC-CcccEEE-ecC--c-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-LLREVKI-GIN--P----- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~-~~~~v~i-~~~--~----- 166 (442)
-+.+.|+||+++||.+++..|+..|. .|++ .+++.++++..+.+|...... ...++.. ..| +
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga-----~Vvi----~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGS-----NVVI----ASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence 35788999999999999999999885 2555 366778888888887643211 1123332 222 1
Q ss_pred ------ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ------YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ------~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+..-|++|..+|... .+- ++. ...+..| .-+.+...+.+.+. ..+.+++++.
T Consensus 83 ~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~g~Ii~~ss 153 (297)
T d1yxma1 83 NLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE--HGGSIVNIIV 153 (297)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH--HCEEEEEECC
T ss_pred HHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc--cccccccccc
Confidence 234568899999887543 221 121 2344555 33456666666664 3566666653
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.89 E-value=0.029 Score=48.00 Aligned_cols=77 Identities=25% Similarity=0.291 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc-ccEEEecCcccccCCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDA 173 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~-~~v~i~~~~~eal~dA 173 (442)
+..+|.|+|| |+++.++++.|...+ .|.+ .+|+.++++.++.++........ ..+.. .+....+.++
T Consensus 17 ~~k~vlIlGa-GG~arai~~aL~~~~------~i~I----~nR~~~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (177)
T d1nvta1 17 KDKNIVIYGA-GGAARAVAFELAKDN------NIII----ANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGV 84 (177)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHTSSS------EEEE----ECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTC
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccc------ceee----ehhhhhHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchh
Confidence 4469999995 999999999986433 2555 37788888888888865432211 12333 3456678899
Q ss_pred cEEEEeCCcC
Q 013466 174 EWALLIGAKP 183 (442)
Q Consensus 174 DiVIi~ag~~ 183 (442)
|+||.+-..+
T Consensus 85 dliIn~tp~g 94 (177)
T d1nvta1 85 DIIINATPIG 94 (177)
T ss_dssp CEEEECSCTT
T ss_pred hhhccCCccc
Confidence 9999874433
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.86 E-value=0.24 Score=44.65 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
-+.+.|.||+++||.+++..|+..|. .|.+. +++++.++..+.++.... . ++. +..| +
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga-----~V~~~----~r~~~~l~~~~~~~~~~g-~---~~~~~~~Dv~~~~~v~~ 74 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGA-----SVYTC----SRNQKELNDCLTQWRSKG-F---KVEASVCDLSSRSERQE 74 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHTT-C---EEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHhcC-C---CceEEEeeCCCHHHHHH
Confidence 35778999999999999999999885 25553 567778887777775432 1 222 1122 1
Q ss_pred -----ccccC-CCcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 -----YELFE-DAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 -----~eal~-dADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+. .-|++|..+|... .+- ++. ...+..|. .+.+...+.+.+ ...+.||+++--
T Consensus 75 ~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~--~~~G~Ii~isS~ 146 (259)
T d2ae2a_ 75 LMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA--SERGNVVFISSV 146 (259)
T ss_dssp HHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TSSEEEEEECCG
T ss_pred HHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh--hccccccccccc
Confidence 22344 4799999888643 221 222 23445553 344556666666 367888888753
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=94.80 E-value=0.0035 Score=56.91 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=57.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--CCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~--dAD 174 (442)
|||.|+||+|.||++++..|...+. .+.+ +..... ...|+.+.. ...+.++ ..|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-----~v~~-----~~~~~~---~~~Dl~~~~-----------~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-----LIAL-----DVHSKE---FCGDFSNPK-----------GVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-----EEEE-----CTTCSS---SCCCTTCHH-----------HHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE-----ECCCcc---ccCcCCCHH-----------HHHHHHHHcCCC
Confidence 7999999999999999999887663 1333 111110 001111110 0112333 359
Q ss_pred EEEEeCCcCCC--CCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 175 WALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 175 iVIi~ag~~~k--pg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+||.+|+.... -..........|......+.....+. +.+++.++.
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~~ss 104 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET---GAWVVHYST 104 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT---TCEEEEEEE
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcc---ccccccccc
Confidence 99998875421 12334455677777777777776653 355666554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.15 Score=45.86 Aligned_cols=115 Identities=14% Similarity=0.032 Sum_probs=70.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
+.+.|+||+++||.+++..|+..|. .|.+ .+++.++++..+.++.... + ..++.. ..| +
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA-----KVAL----VDWNLEAGVQCKAALHEQF-E-PQKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHTTTS-C-GGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHHhc-C-CCcEEEEEeecCCHHHHHHH
Confidence 3567779999999999999999885 3666 3566777777777775432 1 112322 222 1
Q ss_pred ----ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHH----HHHHHHHHHHHhhh-CCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAVA-SRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~kpg~~r~dll~~N~----~Ii~~i~~~I~~~a-~p~a~vivvtNP 224 (442)
.+.+..-|++|..||..... +-.+.++.|. ...+...+.+.+.. +..+.|++++-.
T Consensus 73 ~~~~~~~~G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~ 137 (254)
T d2gdza1 73 FRKVVDHFGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 137 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred HHHHHHHcCCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence 23456789999998865322 2223344443 34455556655432 135778888754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.13 Score=46.65 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=67.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--------- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~--------- 166 (442)
-+++.|+||+++||.+++..|+..|. .|.+ .++++++++..+.++.... .. .+.....+
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~-----~Vil----~~r~~~~l~~~~~~~~~~~-~~--~~~~~~~d~~~~~~~~~ 81 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGA-----HVVV----TARSKETLQKVVSHCLELG-AA--SAHYIAGTMEDMTFAEQ 81 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHHT-CS--EEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHhhhh-cc--cchhhhhhhhhHHHHHH
Confidence 35889999999999999999999885 2555 3677788887777665332 11 12221111
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+...|+++..+|... .+- .+. ...+..| ..+.+.+.+.+++. ++.+++++.
T Consensus 82 ~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~---~G~ii~isS 150 (269)
T d1xu9a_ 82 FVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS---NGSIVVVSS 150 (269)
T ss_dssp HHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred HHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc---CCcceEecc
Confidence 223557888888776432 221 121 2234444 23455566666552 456666653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.60 E-value=0.058 Score=51.18 Aligned_cols=118 Identities=10% Similarity=0.101 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh------------hHHHHHHHHhcccCCCcccEEEec
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ------------ALEGVAMELEDSLFPLLREVKIGI 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~------------~l~g~a~DL~~~~~~~~~~v~i~~ 164 (442)
|||.|+||+|.||++++..|++.|. .|...|-...+... ............. ..++.+..
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~-----~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~ 73 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY-----EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT---GKSIELYV 73 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH---CCCCEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEecCCcccccccccccccccccchHHHHHHHHhhc---CCCcEEEE
Confidence 6999999999999999999999884 24332100000000 0000000000000 01233221
Q ss_pred -C--c----ccccCC--CcEEEEeCCcCCCC--CCc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 165 -N--P----YELFED--AEWALLIGAKPRGP--GME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 165 -~--~----~eal~d--ADiVIi~ag~~~kp--g~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
| + .+++++ .|+|+..|+...-+ ..+ -.+....|+.-...+.+.+.++ +....++..+.
T Consensus 74 ~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~~i~~ss 145 (393)
T d1i24a_ 74 GDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGT 145 (393)
T ss_dssp SCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECC
T ss_pred ccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHh-ccccceeeccc
Confidence 2 1 233443 49999988754311 122 2345678888888888888887 46666766664
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.56 E-value=0.08 Score=49.12 Aligned_cols=175 Identities=12% Similarity=0.010 Sum_probs=88.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc-------
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP------- 166 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~------- 166 (442)
.+++||.|+||+|.||++++..|.+.|. +|...+.....+...+... ..+.... ...++.+..++
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~-----~V~~~d~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~d~~d~~~~ 85 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQ-----KVVGLDNFATGHQRNLDEV-RSLVSEK--QWSNFKFIQGDIRNLDDC 85 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCHHHHHHH-HHHSCHH--HHTTEEEEECCTTSHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-----EEEEEECCCCcchhhHHHH-HHhhhhc--ccCCeeEEeecccccccc
Confidence 4467899999999999999999999874 2332211111112222211 1111100 00123332211
Q ss_pred ccccCCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH----HHHHHCCCCC
Q 013466 167 YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL----ICLKNAPSIP 240 (442)
Q Consensus 167 ~eal~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~----~~~k~s~~~p 240 (442)
.....+.|.|+..+....-+ ..+.......|+.-...+.+.+.+. +...+|..-|.-+ ... -.-+.++.-|
T Consensus 86 ~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~v--yg~~~~~~~~E~~~~~p 162 (341)
T d1sb8a_ 86 NNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSST--YGDHPGLPKVEDTIGKP 162 (341)
T ss_dssp HHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGG--GTTCCCSSBCTTCCCCC
T ss_pred ccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEccccee--eCCCCCCCccCCCCCCC
Confidence 34567788888776533211 1234557788888888898888875 3444444333211 000 0001111111
Q ss_pred cceeeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecC
Q 013466 241 AKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280 (442)
Q Consensus 241 ~kvig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG 280 (442)
.-..+. +-+..-++-...++..+++..-++...|.|.++
T Consensus 163 ~~~Y~~-sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~ 201 (341)
T d1sb8a_ 163 LSPYAV-TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 201 (341)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred CCcchH-HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence 111222 223334555555677788877777434778643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.52 E-value=0.11 Score=46.77 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=70.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-------cCcccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-------INPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-------~~~~ea 169 (442)
+++.|.||+++||.+++..|+..|. .|.+ .+++++.++..+.++.........+++-. ....+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga-----~V~~----~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGA-----KVAF----SDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----ECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 4677779999999999999999885 2555 35677788877777743221100000000 001345
Q ss_pred cCCCcEEEEeCCcCCC-C--CCcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 FEDAEWALLIGAKPRG-P--GMER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 l~dADiVIi~ag~~~k-p--g~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+..-|++|..+|.... + ..+. ...+..| .-+.+...+.+++ ..+.||+++-..
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~---~~G~Iv~isS~~ 140 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE---TGGSIINMASVS 140 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---TCEEEEEECCGG
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCCceecccchh
Confidence 6788999999886432 2 1222 2234444 3346666666654 358888887644
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.41 E-value=0.013 Score=47.43 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=41.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC------ccccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN------PYELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~------~~eal 170 (442)
+|+.|+|+ |.+|..++..|...|. ++.+. |.++++++. +.+.. ..+.++.. ....+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~-----~vvvi----d~d~~~~~~----~~~~~----~~~~~gd~~~~~~l~~a~i 62 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH-----EVLAV----DINEEKVNA----YASYA----THAVIANATEENELLSLGI 62 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-----CCEEE----ESCHHHHHH----TTTTC----SEEEECCTTCTTHHHHHTG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-----eEEEe----cCcHHHHHH----HHHhC----CcceeeecccchhhhccCC
Confidence 36899995 9999999999999885 35553 555565552 22211 12333211 12347
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.+||.||++.+
T Consensus 63 ~~a~~vi~~~~ 73 (134)
T d2hmva1 63 RNFEYVIVAIG 73 (134)
T ss_dssp GGCSEEEECCC
T ss_pred ccccEEEEEcC
Confidence 89998887643
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.23 E-value=0.27 Score=43.70 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=68.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC-----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN----------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~----------- 165 (442)
+++.|+||+++||..++..|+..|. .|.+. +++.++++....++.... ..+..|
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~------~~~~~Dls~~~~i~~~~ 70 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGA-----SLVAV----DREERLLAEAVAALEAEA------IAVVADVSDPKAVEAVF 70 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTCCSSE------EEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHcCCce------EEEEecCCCHHHHHHHH
Confidence 4778889999999999999999885 35553 566677766655554211 111111
Q ss_pred --cccccCCCcEEEEeCCcC-CCCC--CcH---HhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 --PYELFEDAEWALLIGAKP-RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 --~~eal~dADiVIi~ag~~-~kpg--~~r---~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
-.+.+..-|++|..+|.. +++- .+. .+.+..|..-...+.+....+......+++++.-
T Consensus 71 ~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~ 137 (241)
T d2a4ka1 71 AEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 137 (241)
T ss_dssp HHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred HHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence 134457799999987754 3331 222 3445667666666666555554345556666654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.18 E-value=0.28 Score=44.17 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------ 166 (442)
-+++.|.||+++||..++..|+..|. .|.+ .+++++.++..+.++.... . ++.. ..| +
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga-----~V~~----~~r~~~~l~~~~~~~~~~~-~---~~~~~~~Dv~~~~~v~~ 74 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGA-----VIHT----CARNEYELNECLSKWQKKG-F---QVTGSVCDASLRPEREK 74 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTT-C---CEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---ceEEEeccCCCHHHHHH
Confidence 45888999999999999999999885 2555 3567777887777776432 1 2221 111 1
Q ss_pred -----ccccC-CCcEEEEeCCcCC-CC--CCcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFE-DAEWALLIGAKPR-GP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~-dADiVIi~ag~~~-kp--g~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+. .-|++|..+|... +| .++. ...+..|. .+.+...+.+++. ..+.|++++-
T Consensus 75 ~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS 145 (259)
T d1xq1a_ 75 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS--GCGNIIFMSS 145 (259)
T ss_dssp HHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSCEEEEEC-
T ss_pred HHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc--cccccccccc
Confidence 22333 4799999888543 22 1222 22344443 3456666666663 4677777764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.17 E-value=0.29 Score=43.89 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=68.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhhHHHHHHHHhcccCCCcccEEE-ecC---------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKI-GIN--------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~-~~~l~g~a~DL~~~~~~~~~~v~i-~~~--------- 165 (442)
+.+.|.||+++||.+++..|+..|. .|.+. +++ .+.++....++.... . .++.. ..|
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga-----~V~~~----~r~~~~~~~~~~~~~~~~~-g--~~~~~~~~Dv~~~~~v~~ 72 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGA-----DIVLN----GFGDAAEIEKVRAGLAAQH-G--VKVLYDGADLSKGEAVRG 72 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEE----CCSCHHHHHHHHHHHHHHH-T--SCEEEECCCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCCcHHHHHHHHHHHHHhc-C--CcEEEEECCCCCHHHHHH
Confidence 4667789999999999999999885 25564 332 345555555553221 1 11221 111
Q ss_pred ----cccccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 166 ----PYELFEDAEWALLIGAKPRG-PG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 166 ----~~eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
..+.+..-|++|..||.... +- ++. .+.+..| ....+...+.+.+. ..+.||+++-..
T Consensus 73 ~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~--~~G~Iv~isS~~ 144 (260)
T d1x1ta1 73 LVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASAH 144 (260)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCGG
T ss_pred HHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc--CCceEeeccccc
Confidence 13445679999999886532 21 121 2234444 44566777777774 568888887543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.26 Score=44.24 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=69.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-------ecCcccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-------~~~~~ea 169 (442)
+.+.|.||+++||.+++..|+..|. .|.+ .+++++.++..+.++.+..+ +..+++- .....+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~~~~~~~~~~~~~~-~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGA-----RVVI----CDKDESGGRALEQELPGAVF-ILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHCTTEEE-EECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHhcCCCeE-EEccCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999885 2555 35667777777666653321 0000000 0011344
Q ss_pred cCCCcEEEEeCCcCCCCC----CcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 170 FEDAEWALLIGAKPRGPG----MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg----~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
+..-|++|..+|....++ .+.. ..++.| ..+.+...+.+++. .+.||+++-.
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~---~G~Ii~isS~ 139 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS---QGNVINISSL 139 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH---TCEEEEECCH
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC---CCCCcccccc
Confidence 567899999888543222 2222 234444 34566667777663 3677777754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.12 E-value=0.08 Score=45.23 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cCcccccCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~~~eal~d 172 (442)
++-||.|||| |.+|..-+......|- .+.+. |.+.++++.+...+.... ..... ....+.+++
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA-----~V~~~----D~~~~~l~~l~~~~~~~~-----~~~~~~~~~l~~~~~~ 95 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGA-----QVQIF----DINVERLSYLETLFGSRV-----ELLYSNSAEIETAVAE 95 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHGGGS-----EEEECCHHHHHHHHHT
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCC-----EEEEE----eCcHHHHHHHHHhhcccc-----eeehhhhhhHHHhhcc
Confidence 4689999996 9999999998888774 25553 445566664433322111 11111 123678999
Q ss_pred CcEEEEeCCcCC
Q 013466 173 AEWALLIGAKPR 184 (442)
Q Consensus 173 ADiVIi~ag~~~ 184 (442)
||+||-++-.|-
T Consensus 96 aDivI~aalipG 107 (168)
T d1pjca1 96 ADLLIGAVLVPG 107 (168)
T ss_dssp CSEEEECCCCTT
T ss_pred CcEEEEeeecCC
Confidence 999999887654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.92 E-value=0.25 Score=44.43 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
-+++.|.||+++||.+++..|+..|. .|.+. +++.+.+...+.++.... . .++. +..| +
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga-----~V~i~----~r~~~~~~~~~~~~~~~~-g--~~~~~~~~Dv~~~~~v~~ 76 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGA-----NVAVI----YRSAADAVEVTEKVGKEF-G--VKTKAYQCDVSNTDIVTK 76 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE-----EEEEE----ESSCTTHHHHHHHHHHHH-T--CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHHHHHh-C--CceEEEEccCCCHHHHHH
Confidence 35677889999999999999999885 26664 444455555555553321 1 1222 1111 1
Q ss_pred -----ccccCCCcEEEEeCCcCC-CCC--CcHH---hHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 -----YELFEDAEWALLIGAKPR-GPG--MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 -----~eal~dADiVIi~ag~~~-kpg--~~r~---dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+..-|++|..+|... ++- ++.. ..+..|. .+.+...+.+.+. ...+.+++.+.
T Consensus 77 ~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~~g~i~~~~s 147 (260)
T d1h5qa_ 77 TIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQK-QQKGSIVVTSS 147 (260)
T ss_dssp HHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEECC
T ss_pred HHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhccccccc-ccceEEEEeec
Confidence 244668999999887542 321 2222 2344453 3556666776654 35667666544
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.91 E-value=0.28 Score=44.22 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=68.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------- 166 (442)
+.+.|+||+++||.+++..|+..|. .|++...+ +++.++..+.++.... .++. +..| +
T Consensus 8 K~alITGas~GIG~aia~~la~~G~-----~Vv~~~r~---~~~~~~~~~~~~~~~g----~~~~~~~~Dvt~~~~v~~~ 75 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKA-----KVVVNYRS---KEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVINL 75 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-----EEEEEESS---CHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEEEeCC---cHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHH
Confidence 4677889999999999999999885 35554321 2345666666665321 1222 1121 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|... .+- ++. ...++.| ..+.+...+.+.+. +..+.|++++-.
T Consensus 76 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~~Iv~isS~ 146 (261)
T d1geea_ 76 VQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEN-DIKGTVINMSSV 146 (261)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCCEEEEECCG
T ss_pred HHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccc-cccccccccccc
Confidence 234567899999888643 221 222 2234445 34566667777764 356667777654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.91 E-value=0.068 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||.|+||+|.+|++++..|+..|.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~ 28 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGH 28 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 46999999999999999999999874
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.039 Score=46.91 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+.+||+|+||+|.+|+.++..+.+.+-+ .|.-. +++..... ...|+..........+.+..+..+.++++|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~------~lv~~-~~~~~~~~--~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGV------QLGAA-LEREGSSL--LGSDAGELAGAGKTGVTVQSSLDAVKDDFD 73 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTE------ECCCE-ECCTTCTT--CSCCTTCSSSSSCCSCCEESCSTTTTTSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCC------EEEEE-Eecccchh--ccchhhhhhccccCCceeeccHHHHhcccc
Confidence 4689999999999999999999886532 22100 12111100 111222111001124566677778899999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+||=.
T Consensus 74 ViIDF 78 (162)
T d1diha1 74 VFIDF 78 (162)
T ss_dssp EEEEC
T ss_pred eEEEe
Confidence 88743
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.81 E-value=0.52 Score=42.23 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P------ 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~------ 166 (442)
-+++.|+||+++||..++..|+..|. .|.+ .+++++.++..+.++..... ++. +..| +
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-----~V~i----~~r~~~~l~~~~~~~~~~~~----~~~~~~~D~s~~~~~~~ 72 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGA-----RVYT----CSRNEKELDECLEIWREKGL----NVEGSVCDLLSRTERDK 72 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHHHTTC----CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHHhcCC----CceEEEeecCCHHHHHH
Confidence 45899999999999999999999885 2555 35667777776666654321 222 2222 1
Q ss_pred -----cccc-CCCcEEEEeCCcCC-CCCC--cH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 -----YELF-EDAEWALLIGAKPR-GPGM--ER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 -----~eal-~dADiVIi~ag~~~-kpg~--~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+ ..-|++|..+|... .+-. +. ...+..| ....+.+.+.+.+. ..+.+++++-..
T Consensus 73 ~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--~~g~ii~isS~~ 145 (258)
T d1ae1a_ 73 LMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS--QNGNVIFLSSIA 145 (258)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TSEEEEEECCGG
T ss_pred HHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc--cccccccccccc
Confidence 1223 24778888777543 2211 21 2233333 33455566666663 577888777554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.79 E-value=0.34 Score=43.94 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=50.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC--c--------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN--P-------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~--~-------- 166 (442)
+.+.|.||+|+||.+++..|+..|. .|.+. +++.++++..+.++.... +.. ...+..| +
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga-----~Vii~----~r~~~~l~~~~~~l~~~~-g~~-~~~~~~D~~~~~~v~~~~ 94 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA-----QCVIA----SRKMDVLKATAEQISSQT-GNK-VHAIQCDVRDPDMVQNTV 94 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHHHHHHH-SSC-EEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEE----ECCHHHHHHHHHHHHHhc-CCc-eEEEEecccChHHHHHHh
Confidence 5688999999999999999999884 36553 566677777777775332 110 1112121 1
Q ss_pred ---ccccCCCcEEEEeCCcCC
Q 013466 167 ---YELFEDAEWALLIGAKPR 184 (442)
Q Consensus 167 ---~eal~dADiVIi~ag~~~ 184 (442)
.+.+...|++|..+|...
T Consensus 95 ~~~~~~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 95 SELIKVAGHPNIVINNAAGNF 115 (294)
T ss_dssp HHHHHHTCSCSEEEECCCCCC
T ss_pred hhhhhhccccchhhhhhhhcc
Confidence 234567899999887543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.78 E-value=0.12 Score=47.17 Aligned_cols=112 Identities=12% Similarity=-0.026 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc---cccc---
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELF--- 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~---~eal--- 170 (442)
+||-|+||+|.||++++..|+..|. +.+.+.......+.++++. +. ...++.+...+ .+.+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~----~V~~~~r~~~~~~~~~l~~----~~-----~~~~~~~~~~Dl~d~~~~~~~ 67 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY----RVHGLVARRSSDTRWRLRE----LG-----IEGDIQYEDGDMADACSVQRA 67 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCCSSCCCHHHHH----TT-----CGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEEECCCCcccHHHHHH----hc-----ccCCcEEEEccccChHHhhhh
Confidence 4899999999999999999998874 1122321111111122221 11 11133332222 2222
Q ss_pred ---CCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 171 ---EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 171 ---~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+.++++.+++....+ ..+-...+..|+.-...+...+.++ +...+++..|
T Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~-~~~~~~i~~S 123 (321)
T d1rpna_ 68 VIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQAS 123 (321)
T ss_dssp HHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEE
T ss_pred hccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHh-CCCccccccc
Confidence 1355666665533211 1234566778888888888888886 4555555554
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.76 E-value=0.1 Score=44.37 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=42.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc--CCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal--~dAD 174 (442)
+||+|||+ |.+|...+..|...+- +.+.-+ .|++.++++..+.... .....+++.+..+.+ .+.|
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~------~~i~ai-~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll~~~~iD 68 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPN------ATISGV-ASRSLEKAKAFATANN-----YPESTKIHGSYESLLEDPEID 68 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTT------EEEEEE-ECSSHHHHHHHHHHTT-----CCTTCEEESSHHHHHHCTTCC
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCC------CEEEEE-EeCCccccccchhccc-----cccceeecCcHHHhhhccccc
Confidence 69999995 9999999988877543 222211 2556666655443221 112345555544444 5689
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+++
T Consensus 69 ~v~I~ 73 (184)
T d1ydwa1 69 ALYVP 73 (184)
T ss_dssp EEEEC
T ss_pred eeeec
Confidence 99987
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.69 E-value=0.27 Score=43.84 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCc--c--cEE-EecCccccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--R--EVK-IGINPYELF 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~--~--~v~-i~~~~~eal 170 (442)
-+++.|.||+++||..++..|+..|. .|.+. ++++++++..+.++........ . .+. ....-.+.+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~-----~V~~~----~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGA-----RLVAC----DIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 35788999999999999999999885 25553 5666777655544431110000 0 000 000013445
Q ss_pred CCCcEEEEeCCcCC-CCC--CcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 171 EDAEWALLIGAKPR-GPG--MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 171 ~dADiVIi~ag~~~-kpg--~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
..-|++|..||... +|- ++. ...+..|. .+.+...+.+.+. ..+.+++.+-
T Consensus 76 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~~~i~~~ss 136 (242)
T d1ulsa_ 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK--NPGSIVLTAS 136 (242)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCEEEEEECC
T ss_pred CCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc--ccceeeeecc
Confidence 67999999888654 221 222 22344443 3455666666653 4666666653
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=0.053 Score=50.62 Aligned_cols=102 Identities=11% Similarity=0.050 Sum_probs=56.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--ccc----cc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PYE----LF 170 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~e----al 170 (442)
.|.|+||+|.||++++..|+..+. .|...+.......+... ....+.+. ++.. ..| +.+ .+
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll~~g~-----~V~~~d~~~~~~~~~~~-~~~~~~~~------~v~~~~~Dl~d~~~l~~~~ 70 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELIENGY-----DCVVADNLSNSTYDSVA-RLEVLTKH------HIPFYEVDLCDRKGLEKVF 70 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-----EEEEEECCSSCCTHHHH-HHHHHHTS------CCCEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcC-----eEEEEECCCCcchhHHH-hHHhhccc------CCeEEEeecCCHHHHHHHH
Confidence 488999999999999999999874 24332110110111111 11111111 1111 111 222 22
Q ss_pred C--CCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 171 E--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 171 ~--dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
+ +.|+||.+|+.+..+ ..........|......+.+...+.
T Consensus 71 ~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~ 115 (347)
T d1z45a2 71 KEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY 115 (347)
T ss_dssp HHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc
Confidence 3 689999988854311 1233556677888888888888775
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.61 E-value=0.33 Score=43.24 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=67.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC--c---------
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--P--------- 166 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--~--------- 166 (442)
|.|.||+++||..++..|+..|. .+.+.+ .++++.++..+.+++... .++. +..| +
T Consensus 4 ~lITGas~GIG~a~a~~la~~Ga-----~V~i~~---~~~~~~~~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~ 71 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAGC-----KVLVNY---ARSAKAAEEVSKQIEAYG----GQAITFGGDVSKEADVEAMMK 71 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHHT----CEEEEEECCTTSHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCC-----EEEEEe---CCCHHHHHHHHHHHHHcC----CcEEEEeCCCCCHHHHHHHHH
Confidence 56779999999999999999885 255532 234455665655554321 1222 1122 1
Q ss_pred --ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 167 --YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 167 --~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.+.+..-|++|..||... +|- ++. ...++.| .-..+...+.+.+. ..+.||+++--.
T Consensus 72 ~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~IVnisS~~ 140 (244)
T d1edoa_ 72 TAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK--RKGRIINIASVV 140 (244)
T ss_dssp HHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCTH
T ss_pred HHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc--CCcEEEEEcChh
Confidence 334568899999887543 221 121 2234444 34566667777763 578888887543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.49 E-value=0.023 Score=51.37 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++.||.|+||+|.||++++..|+..|.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~ 28 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH 28 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence 456899999999999999999999873
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.49 E-value=0.42 Score=43.24 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-------ecCccc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYE 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-------~~~~~e 168 (442)
-+.+.|.||+++||.+++..|+..|. .|.+ .+++.++++....++.........+++- .....+
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga-----~V~i----~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGA-----KVAV----LDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHH
Confidence 35788999999999999999999885 2555 3566777776666654321110000000 001134
Q ss_pred ccCCCcEEEEeCCcCCCC-------CCc-H---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFEDAEWALLIGAKPRGP-------GME-R---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~dADiVIi~ag~~~kp-------g~~-r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
.+..-|++|..+|..... ... . ...+..| ..+.+...+.+.+. ...+|++.+
T Consensus 76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S 142 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTIS 142 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeee
Confidence 567889999988753211 111 1 1233444 34566667777663 345555554
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.089 Score=43.97 Aligned_cols=67 Identities=16% Similarity=0.038 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~-la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
++||+|||+ |.+|.. .+..|...+-+ +.+.+ .|++.++++..+.++. . ....+..+.+++.|
T Consensus 1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~---~i~~v----~d~~~~~~~~~~~~~~-~--------~~~~~~~~l~~~~D 63 (164)
T d1tlta1 1 KLRIGVVGL-GGIAQKAWLPVLAAASDW---TLQGA----WSPTRAKALPICESWR-I--------PYADSLSSLAASCD 63 (164)
T ss_dssp CEEEEEECC-STHHHHTHHHHHHSCSSE---EEEEE----ECSSCTTHHHHHHHHT-C--------CBCSSHHHHHTTCS
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHhCCCc---EEEEE----EechhHhhhhhhhccc-c--------cccccchhhhhhcc
Confidence 369999995 999985 56666654322 11233 2555666665544432 1 12233344568999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+++
T Consensus 64 ~V~I~ 68 (164)
T d1tlta1 64 AVFVH 68 (164)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 99887
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.38 E-value=0.19 Score=46.51 Aligned_cols=118 Identities=12% Similarity=0.106 Sum_probs=71.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-----chhhhHHHHHHHHhcccCCCcccEEEecC------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-----RSLQALEGVAMELEDSLFPLLREVKIGIN------ 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-----~~~~~l~g~a~DL~~~~~~~~~~v~i~~~------ 165 (442)
+.+.|.||+++||.+++..|+..|. .|.+.+++.+ ++.+.++..+.++...... ....+ .+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga-----~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~-~~~~~~~~ 79 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGA-----LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK--AVANY-DSVEAGEK 79 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE--EEEEC-CCGGGHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccc--ccccc-chHHHHHH
Confidence 4677889999999999999999995 3666554332 2345566666665432211 01111 11
Q ss_pred ----cccccCCCcEEEEeCCcCCC-CC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 ----PYELFEDAEWALLIGAKPRG-PG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ----~~eal~dADiVIi~ag~~~k-pg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
..+.+..-|++|..||..+. +- ++. ...+..| ..+.+...+.+.+. ..+.||+++-.
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~IV~isS~ 150 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ--NYGRIIMTASA 150 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCEEEEEECCH
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC--CCcEEEEeCCh
Confidence 12346679999999886542 21 121 2234444 34567777777774 47888888854
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=93.30 E-value=0.11 Score=48.19 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----E 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~----e 168 (442)
.+||.|+||+|.||++++..|+..|. .|...+. +............ .. + .+.. ..| ++ +
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~-----~V~~~~r----~~~~~~~~~~~~~-~~-~---~i~~~~~Dl~d~~~l~~ 73 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKGYSL----TAPTVPSLFETAR-VA-D---GMQSEIGDIRDQNKLLE 73 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEES----SCSSSSCHHHHTT-TT-T---TSEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEEEEC----CCCccHHHHhhhh-cc-c---CCeEEEeeccChHhhhh
Confidence 47999999999999999999999884 2443222 2221111111111 11 1 1221 122 22 2
Q ss_pred ccC--CCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 169 LFE--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 169 al~--dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+++ +.|+|+..++.+..+. ..-......|..-...+...+.+.. ....++..+
T Consensus 74 ~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~-~~~~~~~~s 130 (356)
T d1rkxa_ 74 SIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG-GVKAVVNIT 130 (356)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHC-CCCEEEEEC
T ss_pred hhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhccc-ccccccccc
Confidence 333 3478887776432110 1123455668777888888888763 444444443
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.6 Score=42.42 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=61.5
Q ss_pred CEEEEE-cCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhhHHHHHHHHhcccCCCcccEEE-ecC--cc----
Q 013466 97 VNIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKI-GIN--PY---- 167 (442)
Q Consensus 97 ~KI~II-GA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d-~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~~---- 167 (442)
+||++| ||+++||.+++..|+..|.- .+.+.....+ ...+.+...+.++... ..++.. ..| ++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~----v~~v~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~ 73 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQ----SFKVYATLRDLKTQGRLWEAARALACP----PGSLETLQLDVRDSKSVA 73 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTC----CEEEEEEESCGGGTHHHHHHHHHTTCC----TTSEEEEECCTTCHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCC----eEEEEEecCChhhhHHHHHHHHHHhcc----CCceEEEeccccchHhhh
Confidence 478765 99999999999999998742 1222211111 1122333333333211 112222 111 11
Q ss_pred ---c--ccCCCcEEEEeCCcCCCCCC---c---HHhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 168 ---E--LFEDAEWALLIGAKPRGPGM---E---RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 168 ---e--al~dADiVIi~ag~~~kpg~---~---r~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
+ .-...|+++..+|....... + -...++.| ..+.+.+.+.+.+. ..+.||+++-
T Consensus 74 ~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~--~~G~Iv~isS 142 (285)
T d1jtva_ 74 AARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR--GSGRVLVTGS 142 (285)
T ss_dssp HHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEE
T ss_pred hhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHc--CCCceEEEec
Confidence 1 11468999988875432221 1 12234445 34566777777774 4677777764
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.07 E-value=0.11 Score=45.31 Aligned_cols=90 Identities=8% Similarity=0.060 Sum_probs=51.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|+||..++..|..-|. .+.. +|... ..-... +. .+....+..+.++.||+|
T Consensus 50 ktvgIiG-~G~IG~~va~~l~~fg~-----~v~~--~d~~~--~~~~~~--~~---------~~~~~~~l~~ll~~sD~i 108 (193)
T d1mx3a1 50 ETLGIIG-LGRVGQAVALRAKAFGF-----NVLF--YDPYL--SDGVER--AL---------GLQRVSTLQDLLFHSDCV 108 (193)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE--ECTTS--CTTHHH--HH---------TCEECSSHHHHHHHCSEE
T ss_pred ceEEEec-cccccccceeeeecccc-----ceee--ccCcc--cccchh--hh---------ccccccchhhccccCCEE
Confidence 5999999 59999999999987553 2433 32221 111101 11 122224567889999999
Q ss_pred EEeCC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++... .+...++- |.+ .+... .+++++||++
T Consensus 109 ~~~~plt~~T~~li-------~~~-------~l~~m-k~~a~lIN~s 140 (193)
T d1mx3a1 109 TLHCGLNEHNHHLI-------NDF-------TVKQM-RQGAFLVNTA 140 (193)
T ss_dssp EECCCCCTTCTTSB-------SHH-------HHTTS-CTTEEEEECS
T ss_pred EEeecccccchhhh-------hHH-------HHhcc-CCCCeEEecC
Confidence 98643 22222221 111 12333 5789999988
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.97 E-value=0.65 Score=41.65 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC---------
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--------- 165 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~--------- 165 (442)
-+++.|.||+++||..++..|+..|. .|.+.+.. +.+.++..+.++.... . ++. +..|
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga-----~Vvi~~~~---~~~~~~~~~~~~~~~g-~---~~~~~~~D~~~~~~v~~ 85 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGC-----KVIVNYAN---STESAEEVVAAIKKNG-S---DAACVKANVGVVEDIVR 85 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEESS---CHHHHHHHHHHHHHTT-C---CEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEeCC---chHHHHHHHHHHHhhC-C---ceeeEeCCCCCHHHHHH
Confidence 46889999999999999999999885 35554322 2345565555554322 1 122 1122
Q ss_pred ----cccccCCCcEEEEeCCcCCCCC---Cc---HHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 166 ----PYELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 166 ----~~eal~dADiVIi~ag~~~kpg---~~---r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
..+.+..-|++|..+|...... .+ -.+.+..|..-...+.+.+..+-..++.+++++.
T Consensus 86 ~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s 153 (272)
T d1g0oa_ 86 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 153 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence 1345667899999887543221 11 2334455544444444444433334556666654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=92.92 E-value=0.2 Score=41.73 Aligned_cols=67 Identities=24% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-CC
Q 013466 96 MVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~-la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-dA 173 (442)
.+||+|||+ |++|.. .+..|...+- +.+..+ |.+.++++..+.++... ..+++..+.++ +.
T Consensus 1 tirvgiiG~-G~~~~~~~~~~l~~~~~------~~~~~~--d~~~~~~~~~~~~~~~~--------~~~~~~~~ll~~~i 63 (167)
T d1xeaa1 1 SLKIAMIGL-GDIAQKAYLPVLAQWPD------IELVLC--TRNPKVLGTLATRYRVS--------ATCTDYRDVLQYGV 63 (167)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTSTT------EEEEEE--CSCHHHHHHHHHHTTCC--------CCCSSTTGGGGGCC
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHhCCC------cEEEEE--ECCHHHHHHHHHhcccc--------cccccHHHhccccc
Confidence 379999995 999976 5666655442 333333 45566776665544311 11233333343 67
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+|+++
T Consensus 64 D~V~I~ 69 (167)
T d1xeaa1 64 DAVMIH 69 (167)
T ss_dssp SEEEEC
T ss_pred ceeccc
Confidence 999887
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.057 Score=48.48 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=56.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCce-EEEeccccchhhhHHHHHHHHhcccCCCcccEEEe------cCcccccC
Q 013466 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPI-ALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG------INPYELFE 171 (442)
Q Consensus 99 I~IIGA~G~VG~~la~~L~~~~l~~~~~~I-~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~------~~~~eal~ 171 (442)
|.|+||+|.||++++..|++.|.. .| .+..+. + . .+.. .-.++.-. ..... ......+.
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~----~V~~~d~~~-~-~-~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 67 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGIT----DILVVDNLK-D-G-TKFV-NLVDLNIA------DYMDKEDFLIQIMAGEEFG 67 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCC----CEEEEECCS-S-G-GGGH-HHHTSCCS------EEEEHHHHHHHHHTTCCCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCC----eEEEEECCC-C-c-chhh-cccccchh------hhccchHHHHHHhhhhccc
Confidence 789999999999999999998752 13 332121 1 1 1111 11111100 11100 01235678
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhh
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~ 211 (442)
++++|+..|+....+..........|......+.......
T Consensus 68 ~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (307)
T d1eq2a_ 68 DVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER 107 (307)
T ss_dssp SCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccccccccccccccccccccccccccc
Confidence 8898888887655555555556666666666666665554
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=92.68 E-value=0.57 Score=41.86 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC---c-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN---P----- 166 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~---~----- 166 (442)
-+.|.|+||+++||..+|..|+..|. .+.+... +.+.+++. .++.... +. .++.. ..| +
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~-----~vii~~r----~~~~~~~~-~~~~~~~-~~-~~~~~~~~d~~~~~~~~~ 72 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNL-----KNFVILD----RVENPTAL-AELKAIN-PK-VNITFHTYDVTVPVAESK 72 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCC-----SEEEEEE----SSCCHHHH-HHHHHHC-TT-SEEEEEECCTTSCHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-----EEEEEEC----CcccHHHH-HHHHhhC-CC-CCEEEEEeecCCCHHHHH
Confidence 45789999999999999999999885 2444221 12223322 2222111 11 11221 111 1
Q ss_pred ------ccccCCCcEEEEeCCcCCCCCCcHHhHHHHHH----HHHHHHHHHHHhh-hCCCeEEEEeCC
Q 013466 167 ------YELFEDAEWALLIGAKPRGPGMERAGLLDING----QIFAEQGKALNAV-ASRNVKVIVVGN 223 (442)
Q Consensus 167 ------~eal~dADiVIi~ag~~~kpg~~r~dll~~N~----~Ii~~i~~~I~~~-a~p~a~vivvtN 223 (442)
.+.+..-|++|..||.......+ ..++.|. -..+...+.+.+. .++.+.||+++-
T Consensus 73 ~~~~~~~~~~g~iDilvnnAG~~~~~~~~--~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS 138 (254)
T d1sbya1 73 KLLKKIFDQLKTVDILINGAGILDDHQIE--RTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCTTCHH--HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHHHcCCCCEEEeCCCCCCHHHHH--HHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence 23357899999999865432222 2344453 3556666666543 125678888764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=92.67 E-value=0.16 Score=42.85 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
+++||+|+|+ |++|...+..|...+- +.|.-+ .+++.+... ...+....+..+...+.|
T Consensus 2 ~kirvgiiG~-G~ig~~~~~~l~~~~~------~elvav-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~D 60 (170)
T d1f06a1 2 TNIRVAIVGY-GNLGRSVEKLIAKQPD------MDLVGI-FSRRATLDT-------------KTPVFDVADVDKHADDVD 60 (170)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSS------EEEEEE-EESSSCCSS-------------SSCEEEGGGGGGTTTTCS
T ss_pred CcceEEEECC-hHHHHHHHHHHHhCCC------cEEEEE-Eeccccccc-------------ccccccchhhhhhccccc
Confidence 3579999995 9999999988876543 333222 233322110 113344445556778999
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+|+++..
T Consensus 61 ~Vvi~tp 67 (170)
T d1f06a1 61 VLFLCMG 67 (170)
T ss_dssp EEEECSC
T ss_pred eEEEeCC
Confidence 9998744
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.66 E-value=0.77 Score=36.87 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=20.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
|||+|.||+|.+|+.++..+...+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~ 24 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG 24 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC
Confidence 699999999999999988776654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.56 E-value=0.21 Score=39.82 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred eeEEeecccchHHhhhccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 77 VFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
||.+...-..+...+..++..+|+|||| |.+|.-+|..|...+.
T Consensus 11 v~~lrtl~Da~~l~~~~~~~~~vvIIGg-G~iG~E~A~~l~~~g~ 54 (121)
T d1d7ya2 11 VHTLRTLEDARRIQAGLRPQSRLLIVGG-GVIGLELAATARTAGV 54 (121)
T ss_dssp EEECCSHHHHHHHHHHCCTTCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhhhcCCeEEEECc-chhHHHHHHHhhcccc
Confidence 7766443223333444556689999995 9999999999999874
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.53 E-value=0.12 Score=44.48 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=46.3
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA-~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~--~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
..||++||= ..+|..+++..+..-|. .|.+..-+.. .+.....+.++.... ...++++.+..+++++
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~-------~l~l~~P~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~eai~~ 74 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGM-------DVRIAAPKALWPHDEFVAQCKKFAEES---GAKLTLTEDPKEAVKG 74 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTC-------EEEEECCGGGSCCHHHHHHHHHHHHHH---TCEEEEESCHHHHTTT
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCC-------EEEEEccHHHHhhhHHHHHHHHHhhcc---CCeEEEEeChhhcccc
Confidence 479999994 24799999998888663 3443322111 011112222222211 1367888888999999
Q ss_pred CcEEEEeCC
Q 013466 173 AEWALLIGA 181 (442)
Q Consensus 173 ADiVIi~ag 181 (442)
+|+|....-
T Consensus 75 aDvVyt~~w 83 (185)
T d1dxha2 75 VDFVHTDVW 83 (185)
T ss_dssp CSEEEECCC
T ss_pred ccEEEeehh
Confidence 999887643
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.50 E-value=0.5 Score=42.08 Aligned_cols=50 Identities=26% Similarity=0.206 Sum_probs=35.6
Q ss_pred CEEEEE-cCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcc
Q 013466 97 VNIAVS-GAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (442)
Q Consensus 97 ~KI~II-GA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~ 152 (442)
.||+|| ||+++||..++..|+...--+. .|++ .+++.++++..+.+|...
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~----~~r~~~~l~~~~~~l~~~ 56 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLV----SARSESMLRQLKEELGAQ 56 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEE----EESCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEE----EECCHHHHHHHHHHHHhh
Confidence 477766 9999999999999986321111 2555 366778888888888643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.49 E-value=0.86 Score=35.25 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||.|||+ |.+|..-+..|...|- .+.++ +.+..++ +.. +.+.. . ....-..-..+++.++++
T Consensus 12 ~k~vlVvG~-G~va~~ka~~ll~~ga-----~v~v~--~~~~~~~-~~~----~~~~~-~--i~~~~~~~~~~dl~~~~l 75 (113)
T d1pjqa1 12 DRDCLIVGG-GDVAERKARLLLEAGA-----RLTVN--ALTFIPQ-FTV----WANEG-M--LTLVEGPFDETLLDSCWL 75 (113)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTB-----EEEEE--ESSCCHH-HHH----HHTTT-S--CEEEESSCCGGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----eEEEE--eccCChH-HHH----HHhcC-C--ceeeccCCCHHHhCCCcE
Confidence 369999995 9999999999999874 24443 2232221 221 11111 0 012222334678999999
Q ss_pred EEEeCC
Q 013466 176 ALLIGA 181 (442)
Q Consensus 176 VIi~ag 181 (442)
|+.+.+
T Consensus 76 v~~at~ 81 (113)
T d1pjqa1 76 AIAATD 81 (113)
T ss_dssp EEECCS
T ss_pred EeecCC
Confidence 998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.36 Score=40.19 Aligned_cols=95 Identities=17% Similarity=0.068 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcc-ccc---
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPY-ELF--- 170 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~-eal--- 170 (442)
.-+|.|+|| |.+|...+..+...|. ..|.. +|+++++++ .+.++. . . .+... ..+. +..
T Consensus 27 gd~VlI~G~-G~iG~~~~~~a~~~G~----~~Vi~----~d~~~~rl~-~a~~~G--a-~---~~~~~~~~~~~~~~~~~ 90 (171)
T d1pl8a2 27 GHKVLVCGA-GPIGMVTLLVAKAMGA----AQVVV----TDLSATRLS-KAKEIG--A-D---LVLQISKESPQEIARKV 90 (171)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----EESCHHHHH-HHHHTT--C-S---EEEECSSCCHHHHHHHH
T ss_pred CCEEEEECC-CccHHHHHHHHHHcCC----ceEEe----ccCCHHHHH-HHHHhC--C-c---ccccccccccccccccc
Confidence 458999996 9999999999888774 23544 366667766 555542 1 0 11111 1111 111
Q ss_pred -----CCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 171 -----EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 171 -----~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.++|+||-+.|.+ ..+.... . .+.+.+.+++++.|.
T Consensus 91 ~~~~g~g~Dvvid~~G~~---------------~~~~~a~---~-~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 91 EGQLGCKPEVTIECTGAE---------------ASIQAGI---Y-ATRSGGTLVLVGLGS 131 (171)
T ss_dssp HHHHTSCCSEEEECSCCH---------------HHHHHHH---H-HSCTTCEEEECSCCC
T ss_pred cccCCCCceEEEeccCCc---------------hhHHHHH---H-HhcCCCEEEEEecCC
Confidence 3789999987732 2222222 2 234788888888764
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.13 Score=38.90 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..||+|+|+ |..|.+++..|...+. .+.+.+- ..+.+... ++.+ ...+.......+.+.+.|+
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~-----~v~~~D~--~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~d~ 67 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGV-----TPRVMDT--RMTPPGLD----KLPE-----AVERHTGSLNDEWLMAADL 67 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTC-----CCEEEES--SSSCTTGG----GSCT-----TSCEEESBCCHHHHHHCSE
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCC-----EEEEeeC--CcCchhHH----HHhh-----ccceeecccchhhhccCCE
Confidence 358999995 9999999999999885 2555432 11111111 1111 1233444445677899999
Q ss_pred EEEeCCcCC
Q 013466 176 ALLIGAKPR 184 (442)
Q Consensus 176 VIi~ag~~~ 184 (442)
||+.-|.|.
T Consensus 68 vi~SPGi~~ 76 (93)
T d2jfga1 68 IVASPGIAL 76 (93)
T ss_dssp EEECTTSCT
T ss_pred EEECCCCCC
Confidence 999877664
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.31 Score=44.14 Aligned_cols=98 Identities=21% Similarity=0.222 Sum_probs=55.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc--cCCCc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL--FEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea--l~dAD 174 (442)
+||.|+||+|.||++++..|++.+.. .+.+ + ++.+ .|+.+.. . ..+. ..+.|
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~----vi~~---~-~~~~-------~~~~~~~-----~------~~~~~~~~~~d 56 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDV----ELVL---R-TRDE-------LNLLDSR-----A------VHDFFASERID 56 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTE----EEEC---C-CTTT-------CCTTCHH-----H------HHHHHHHHCCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCE----EEEe---c-Cchh-------ccccCHH-----H------HHHHHhhcCCC
Confidence 49999999999999999999987741 1222 1 1111 0111110 0 0001 12357
Q ss_pred EEEEeCCcCCCC---CCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 175 WALLIGAKPRGP---GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 175 iVIi~ag~~~kp---g~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
+|+..++..... .....+.+..|+.....+...+.++ +-. .+|.+|
T Consensus 57 ~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~-~~i~~S 105 (315)
T d1e6ua_ 57 QVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVN-KLLFLG 105 (315)
T ss_dssp EEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-EEEEEC
T ss_pred EEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEC
Confidence 788776532110 1134556778888888888888775 222 355554
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=91.68 E-value=0.24 Score=42.59 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+|. |.||..++..|..-+. .+.. +|....... ...+. .+....+..+.+++||+
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~fg~-----~v~~--~d~~~~~~~---~~~~~---------~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 44 AMHVGTVAA-GRIGLAVLRRLAPFDV-----HLHY--TDRHRLPES---VEKEL---------NLTWHATREDMYPVCDV 103 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTC-----EEEE--ECSSCCCHH---HHHHH---------TCEECSSHHHHGGGCSE
T ss_pred ccceeeccc-cccchhhhhhhhccCc-----eEEE--Eeecccccc---ccccc---------cccccCCHHHHHHhccc
Confidence 469999995 9999999999987553 2433 322111111 11111 12333556889999999
Q ss_pred EEEeCCc-CCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 176 ALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 176 VIi~ag~-~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
|++.... +...++= |. +.++.. ++++++||++=
T Consensus 104 v~~~~plt~~T~~li-------~~-------~~l~~m-k~ga~lIN~aR 137 (188)
T d2naca1 104 VTLNCPLHPETEHMI-------ND-------ETLKLF-KRGAYIVNTAR 137 (188)
T ss_dssp EEECSCCCTTTTTCB-------SH-------HHHTTS-CTTEEEEECSC
T ss_pred hhhcccccccchhhh-------HH-------HHHHhC-CCCCEEEecCc
Confidence 9886432 1111221 11 122333 57899999984
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.12 Score=44.17 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhh---hHHHHHHHHhcccCCCcccEEEe-cC----cc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQ---ALEGVAMELEDSLFPLLREVKIG-IN----PY 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~---~l~g~a~DL~~~~~~~~~~v~i~-~~----~~ 167 (442)
..+|.|+|| |++|.++++.|...+. ..|.+. +++.+ ++...+.++.... . ..+.+. .. ..
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~g~----~~i~i~----nR~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~ 85 (182)
T d1vi2a1 18 GKTMVLLGA-GGASTAIGAQGAIEGL----KEIKLF----NRRDEFFDKALAFAQRVNENT-D--CVVTVTDLADQQAFA 85 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC----SEEEEE----ECSSTTHHHHHHHHHHHHHHS-S--CEEEEEETTCHHHHH
T ss_pred CCEEEEECC-cHHHHHHHHHHhhcCC----ceEeee----ccchHHHHHHHHHHHHHHhhc-C--cceEeeecccccchh
Confidence 469999995 9999999999999885 246663 44433 3444444444222 2 122322 11 23
Q ss_pred cccCCCcEEEEeCC
Q 013466 168 ELFEDAEWALLIGA 181 (442)
Q Consensus 168 eal~dADiVIi~ag 181 (442)
+.+.++|+||.+..
T Consensus 86 ~~~~~~diiIN~Tp 99 (182)
T d1vi2a1 86 EALASADILTNGTK 99 (182)
T ss_dssp HHHHTCSEEEECSS
T ss_pred hhhcccceeccccC
Confidence 45789999998743
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.14 Score=47.24 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=58.4
Q ss_pred CEE-EEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc-------cc
Q 013466 97 VNI-AVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP-------YE 168 (442)
Q Consensus 97 ~KI-~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~-------~e 168 (442)
+|| .|+||+|.||++++..|+..|. +.+.+.......+..+++....+. ......++.+..++ ..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~----~V~~i~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~d~~~~~~ 73 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY----EVHGIVRRSSSFNTGRIEHLYKNP---QAHIEGNMKLHYGDLTDSTCLVK 73 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCCSSCCCTTTGGGC------------CEEEEECCTTCHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC----EEEEEECCCcccchhhHHHHhhch---hhhccCCcEEEEeecCCchhhHH
Confidence 489 5999999999999999999885 122332111111112222111111 10111234433222 12
Q ss_pred cc--CCCcEEEEeCCcCCCC--CCcHHhHHHHHHHHHHHHHHHHHhhhCCC-eEEEEeC
Q 013466 169 LF--EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRN-VKVIVVG 222 (442)
Q Consensus 169 al--~dADiVIi~ag~~~kp--g~~r~dll~~N~~Ii~~i~~~I~~~a~p~-a~vivvt 222 (442)
.+ .+.|+|+..++..... .....+..+.|+.-...+...+.++...+ ..++.+|
T Consensus 74 ~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S 132 (347)
T d1t2aa_ 74 IINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS 132 (347)
T ss_dssp HHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred HHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence 22 2445666665543211 12345556778777777777777753222 3566554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.55 E-value=0.64 Score=38.34 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC---ccc----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---PYE---- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~---~~e---- 168 (442)
.-+|.|+| +|.||...++.+...|. .+.. +|+++++++ .+.++..- .+..... +.+
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~Ga-----~vi~----v~~~~~r~~-~a~~~ga~------~~~~~~~~~~~~~~~~~ 89 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYGA-----FVVC----TARSPRRLE-VAKNCGAD------VTLVVDPAKEEESSIIE 89 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH-HHHHTTCS------EEEECCTTTSCHHHHHH
T ss_pred CCEEEEEc-ccccchhhHhhHhhhcc-----cccc----cchHHHHHH-HHHHcCCc------EEEeccccccccchhhh
Confidence 46899999 49999999998888774 1433 356666665 55554311 1111111 111
Q ss_pred c-----cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 169 L-----FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 169 a-----l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
. =.++|+||-+.|.+ ..+... ++- +.|++.+++++.|.
T Consensus 90 ~~~~~~g~g~D~vid~~g~~---------------~~~~~a---~~~-~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 90 RIRSAIGDLPNVTIDCSGNE---------------KCITIG---INI-TRTGGTLMLVGMGS 132 (170)
T ss_dssp HHHHHSSSCCSEEEECSCCH---------------HHHHHH---HHH-SCTTCEEEECSCCS
T ss_pred hhhcccccCCceeeecCCCh---------------HHHHHH---HHH-HhcCCceEEEecCC
Confidence 1 14689999887732 112222 222 35889999998764
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.49 E-value=0.015 Score=52.20 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|+||..++..|++.|.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~ 27 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNW 27 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46899999999999999999999884
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.48 E-value=0.038 Score=49.60 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHH---HHHHHHhcccCCCcccEE-EecCcccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVK-IGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~---g~a~DL~~~~~~~~~~v~-i~~~~~eal~ 171 (442)
.++|.|.||+++||..++..|+..|. .|.+... +.+.++ .+..|+.+.. .+. ....-.+.+.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga-----~V~~~~r----~~~~~~~~~~~~~Dv~~~~-----~v~~~~~~~~~~~g 72 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGH-----KVAVTHR----GSGAPKGLFGVEVDVTDSD-----AVDRAFTAVEEHQG 72 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEES----SSCCCTTSEEEECCTTCHH-----HHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEEEC----CcchhcCceEEEEecCCHH-----HHHHHHHHHHHhcC
Confidence 35888999999999999999999885 2555433 222221 1111221111 000 0011244566
Q ss_pred CCcEEEEeCCcCC-CC--CCcH---HhHHHHHH----HHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 172 DAEWALLIGAKPR-GP--GMER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 172 dADiVIi~ag~~~-kp--g~~r---~dll~~N~----~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.-|++|..+|... ++ ..+. ...++.|. .+.+...+.+.+. ..+.||+++--.
T Consensus 73 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~g~Iv~isS~~ 134 (237)
T d1uzma1 73 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN--KFGRMIFIGSVS 134 (237)
T ss_dssp SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEECCCC
T ss_pred CceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc--CCCceEEEcchh
Confidence 7899999888643 22 1222 22344443 3456667777773 577788877543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.075 Score=47.74 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=63.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec--------Cccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--------NPYE 168 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~--------~~~e 168 (442)
+++.|.||+++||.+++..|+..|. .|++. ++++++++.. .+.. . .+..... ...+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vi~~----~r~~~~l~~~----~~~~-~--~~~~~~d~~~~~~~~~~~~ 70 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGA-----KVIAT----DINESKLQEL----EKYP-G--IQTRVLDVTKKKQIDQFAN 70 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC-----EEEEE----ESCHHHHGGG----GGST-T--EEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEE----eCCHHHHHHH----Hhcc-C--Cceeeeecccccccccccc
Confidence 4577779999999999999999884 36663 4555554422 2111 1 1111110 0134
Q ss_pred ccCCCcEEEEeCCcCCC-CC--CcHH---hHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFEDAEWALLIGAKPRG-PG--MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~dADiVIi~ag~~~k-pg--~~r~---dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+..-|++|..+|.+.. +- ++.. ..+..| ..+.+...+.+.+. +.+.+++++..
T Consensus 71 ~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--~~g~Ii~isS~ 134 (245)
T d2ag5a1 71 EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ--KSGNIINMSSV 134 (245)
T ss_dssp HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCS
T ss_pred ccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC--CCceeeeeech
Confidence 56789999998886542 21 2222 122333 34556666767663 67777887754
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=91.47 E-value=0.16 Score=44.82 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=42.7
Q ss_pred cCCCEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC-
Q 013466 94 KKMVNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE- 171 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~-~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~- 171 (442)
.++.||+|||+ |.+|. +++..+...+- +.|.-+ .|++.++++..+.++. .. ...+..+++..+.++
T Consensus 31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~------~~ivav-~d~~~~~a~~~~~~~~-i~---~~~~~~~~d~~ell~~ 98 (221)
T d1h6da1 31 DRRFGYAIVGL-GKYALNQILPGFAGCQH------SRIEAL-VSGNAEKAKIVAAEYG-VD---PRKIYDYSNFDKIAKD 98 (221)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTCSS------EEEEEE-ECSCHHHHHHHHHHTT-CC---GGGEECSSSGGGGGGC
T ss_pred CCCEEEEEEcC-cHHHHHHHHHHHHhCCC------ceEEEE-ecCCHHHHHHHHHhhc-cc---cccccccCchhhhccc
Confidence 45789999995 99996 45555544322 322211 3666677775554432 11 123444454445554
Q ss_pred -CCcEEEEeC
Q 013466 172 -DAEWALLIG 180 (442)
Q Consensus 172 -dADiVIi~a 180 (442)
+.|+|+++.
T Consensus 99 ~~iD~V~I~t 108 (221)
T d1h6da1 99 PKIDAVYIIL 108 (221)
T ss_dssp TTCCEEEECS
T ss_pred ccceeeeecc
Confidence 578888863
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=91.44 E-value=0.23 Score=47.05 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
....++|||+ |..+..-+..+..---+ +.|.++ +++.++.+..+.++.+.. ..++....+..+++++||
T Consensus 127 da~~l~iiG~-G~QA~~~~~a~~~v~~i---~~V~v~----~r~~~~~~~~~~~l~~~~---g~~v~~~~s~~eav~~AD 195 (340)
T d1x7da_ 127 NARKMALIGN-GAQSEFQALAFHKHLGI---EEIVAY----DTDPLATAKLIANLKEYS---GLTIRRASSVAEAVKGVD 195 (340)
T ss_dssp TCCEEEEECC-STTHHHHHHHHHHHSCC---CEEEEE----CSSHHHHHHHHHHHTTCT---TCEEEECSSHHHHHTTCS
T ss_pred CCceEEEEcc-cHHHHHHHHHHhhhcce---eeeEEE----ecChHHHHHHHHhhhhcc---CCCceecCCHHHHHhcCC
Confidence 3579999995 99888766655432212 345553 566677777887775321 235677777889999999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 196 Ii~t~ 200 (340)
T d1x7da_ 196 IITTV 200 (340)
T ss_dssp EEEEC
T ss_pred ceeec
Confidence 99874
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=91.42 E-value=0.95 Score=40.20 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=66.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-------ecCcccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINPYEL 169 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-------~~~~~ea 169 (442)
+.+.|.||+++||.+++..|+..|. .|.+. +++++..+ .+..+....++. +++- .....+.
T Consensus 6 K~alITGas~GIG~aia~~la~~G~-----~V~~~----~~~~~~~~-~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGA-----LVALC----DLRPEGKE-VAEAIGGAFFQV--DLEDERERVRFVEEAAYA 73 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ESSTTHHH-HHHHHTCEEEEC--CTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHH-HHHHcCCeEEEE--eCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999885 26664 33444333 333332111111 0000 0012445
Q ss_pred cCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 170 FEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 170 l~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
+..-|++|..||... ++- ++- ...+..| ..+.+...+.+.+. ..+.||+++-..
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~~G~Ii~isS~~ 137 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASVQ 137 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc--cccccccccccc
Confidence 678999999888643 222 121 1234444 33566666777663 578888887543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=91.38 E-value=0.14 Score=39.34 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=47.1
Q ss_pred hccCCCEEEEEcCCCchH-HHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCccccc
Q 013466 92 SWKKMVNIAVSGAAGMIA-NHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF 170 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG-~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal 170 (442)
++.+.+||-+||- |++| +++|..|...|. .|.-. |..... ...+|.+.- ..+.. ....+.+
T Consensus 4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~-----~VsGS----D~~~~~---~~~~L~~~G----i~v~~-g~~~~~i 65 (96)
T d1p3da1 4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGY-----QISGS----DIADGV---VTQRLAQAG----AKIYI-GHAEEHI 65 (96)
T ss_dssp CCTTCCEEEEETT-TSTTHHHHHHHHHHHTC-----EEEEE----ESCCSH---HHHHHHHTT----CEEEE-SCCGGGG
T ss_pred cchhCCEEEEEEE-CHHHHHHHHHHHHhCCC-----EEEEE----eCCCCh---hhhHHHHCC----CeEEE-CCccccC
Confidence 3456789999995 8888 557999999886 25553 332211 222333221 12333 3346678
Q ss_pred CCCcEEEEeCCcCC
Q 013466 171 EDAEWALLIGAKPR 184 (442)
Q Consensus 171 ~dADiVIi~ag~~~ 184 (442)
+++|+||.+.+.|.
T Consensus 66 ~~~d~vV~S~AI~~ 79 (96)
T d1p3da1 66 EGASVVVVSSAIKD 79 (96)
T ss_dssp TTCSEEEECTTSCT
T ss_pred CCCCEEEECCCcCC
Confidence 99999999887764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.35 Score=43.61 Aligned_cols=116 Identities=10% Similarity=0.020 Sum_probs=67.5
Q ss_pred CEEE-EEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--------
Q 013466 97 VNIA-VSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN-------- 165 (442)
Q Consensus 97 ~KI~-IIGA~G~VG~~la~~L~~~-~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~-------- 165 (442)
++|+ |.||+++||..++..|+.. +. .|.+ .+++.++++..+.+|.... . ++.. ..|
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~-----~Vi~----~~r~~~~~~~~~~~l~~~~-~---~~~~~~~Dvs~~~sv~ 69 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSG-----DVVL----TARDVTRGQAAVQQLQAEG-L---SPRFHQLDIDDLQSIR 69 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSS-----EEEE----EESSHHHHHHHHHHHHHTT-C---CCEEEECCTTCHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCC-----EEEE----EECCHHHHHHHHHHHHhcC-C---cEEEEEEecCCHHHHH
Confidence 4675 6799999999999999874 53 2555 3667788887877776432 1 1111 111
Q ss_pred -----cccccCCCcEEEEeCCcCC-CCCC--cHH---hHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 166 -----PYELFEDAEWALLIGAKPR-GPGM--ERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 166 -----~~eal~dADiVIi~ag~~~-kpg~--~r~---dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
-.+.+..-|++|..||... .+.. +.. ..+..|.--...+.+.+-.+-.+.+.+++++.-.
T Consensus 70 ~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~ 140 (275)
T d1wmaa1 70 ALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM 140 (275)
T ss_dssp HHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred HHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 1334567899999888643 2222 221 2344553333333333333223467888888643
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.33 E-value=0.055 Score=49.89 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.|+.|+||+|.||++++..|+..|.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~ 26 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGY 26 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcC
Confidence 4788999999999999999999885
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.36 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=23.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.||.|+||+|.||++++..|+..|.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~ 27 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY 27 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC
Confidence 4899999999999999999998875
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.085 Score=47.20 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=26.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l 132 (442)
..||.|+|+ |++|+.++..|+..|+ + .|.|.|
T Consensus 30 ~~~VliiG~-GglGs~va~~La~~Gv-g---~i~lvD 61 (247)
T d1jw9b_ 30 DSRVLIVGL-GGLGCAASQYLASAGV-G---NLTLLD 61 (247)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTC-S---EEEEEC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEC
Confidence 359999995 9999999999999997 2 355543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.95 E-value=1.3 Score=39.24 Aligned_cols=111 Identities=8% Similarity=0.062 Sum_probs=64.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecC---------ccc
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------PYE 168 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~---------~~e 168 (442)
...|.||+++||..++..|++.|. .|.+. +++.+.++....... .. . .+.++.. ..+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-----~V~i~----~r~~~~~~~~~~~~~-~~-~---~~dv~~~~~~~~~~~~~~~ 67 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-----TVACH----DESFKQKDELEAFAE-TY-P---QLKPMSEQEPAELIEAVTS 67 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-----EEEEC----CGGGGSHHHHHHHHH-HC-T---TSEECCCCSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHhhhC-cE-E---EeccCCHHHHHHHHHHHHH
Confidence 367999999999999999999885 26553 444444443322111 11 1 1222211 134
Q ss_pred ccCCCcEEEEeCCcC--CCCC--CcHHh---HHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 169 LFEDAEWALLIGAKP--RGPG--MERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 169 al~dADiVIi~ag~~--~kpg--~~r~d---ll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+-.-|++|..+|.. .+|- ++..+ .+..| ..+.+...+.+.+. ..+.||+++--
T Consensus 68 ~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~--~~G~IV~isS~ 132 (252)
T d1zmta1 68 AYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR--KSGHIIFITSA 132 (252)
T ss_dssp HHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCCEEEEECCS
T ss_pred HcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccc--ccceeeccccc
Confidence 556789999877743 2332 22222 23333 34567777887774 46777777743
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=90.94 E-value=0.15 Score=42.74 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=18.6
Q ss_pred cCCCEEEEEcCCCchHHHHH-HHHHHcC
Q 013466 94 KKMVNIAVSGAAGMIANHLL-FKLAAGE 120 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la-~~L~~~~ 120 (442)
.+++||+||| +|++|..+. ..|...+
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~ 28 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAK 28 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCS
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCC
Confidence 4568999999 599998754 4444434
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=90.94 E-value=2.6 Score=37.07 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEE-ecC--c-------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i-~~~--~------- 166 (442)
+.+.|+||+++||.+++..|+..|. .|.+.+.+. .+.++....++. .++.. ..| +
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga-----~V~~~~~~~---~~~~~~~~~~~g-------~~~~~~~~Dvs~~~~v~~~ 70 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGA-----DIAIADLVP---APEAEAAIRNLG-------RRVLTVKCDVSQPGDVEAF 70 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEEESSC---CHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEEECCc---hHHHHHHHHHcC-------CcEEEEEeeCCCHHHHHHH
Confidence 4677889999999999999999885 266643321 122232222221 11221 111 1
Q ss_pred ----ccccCCCcEEEEeCCcCC-CCC--CcH---HhHHHHH----HHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 167 ----YELFEDAEWALLIGAKPR-GPG--MER---AGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 167 ----~eal~dADiVIi~ag~~~-kpg--~~r---~dll~~N----~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
.+.+..-|++|..+|... +|- ++. ...++.| .-+.+...+.+.+. ..+.||+++--
T Consensus 71 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~--~~G~Iv~isS~ 140 (247)
T d2ew8a1 71 GKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN--GWGRIINLTST 140 (247)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEECCG
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc--CCCCccccccc
Confidence 334568999999888643 221 222 2233444 34566677777774 46888888744
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.087 Score=51.56 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc----c-----------chhhhHHHHHHHHhcccCCCcccE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS----E-----------RSLQALEGVAMELEDSLFPLLREV 160 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~----d-----------~~~~~l~g~a~DL~~~~~~~~~~v 160 (442)
..||.|||| |++|+.++..|+..|+ + .|.|+|.|. + ....+++..+.-+.... +. .++
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g---~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n-p~-v~i 109 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGF-R---QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV-PN-CNV 109 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTC-C---CEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS-TT-CCC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCC-C---eEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC-CC-Cce
Confidence 369999996 9999999999999996 3 266655432 0 01124444444443322 21 123
Q ss_pred EEec-----CcccccCCCcEEEEeCC
Q 013466 161 KIGI-----NPYELFEDAEWALLIGA 181 (442)
Q Consensus 161 ~i~~-----~~~eal~dADiVIi~ag 181 (442)
.... ...+-+++.|+||.+..
T Consensus 110 ~~~~~~i~~~~~~~~~~~DlVi~~~D 135 (426)
T d1yovb1 110 VPHFNKIQDFNDTFYRQFHIIVCGLD 135 (426)
T ss_dssp EEECSCGGGBCHHHHTTCSEEEECCS
T ss_pred EeeeccccchHHHHHHhcchheeccC
Confidence 3222 23455899999987733
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.81 E-value=0.19 Score=46.95 Aligned_cols=71 Identities=14% Similarity=0.040 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCc
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dAD 174 (442)
....++|||+ |..+..-+..|....-+ +.|.++ +++.++.+..+.++.+.. +....+..+++++||
T Consensus 124 ~~~~l~iiGa-G~QA~~~~~al~~~~~i---~~i~v~----~r~~e~~~~~~~~~~~~~------~~~~~~~~~a~~~aD 189 (320)
T d1omoa_ 124 NSSVFGFIGC-GTQAYFQLEALRRVFDI---GEVKAY----DVREKAAKKFVSYCEDRG------ISASVQPAEEASRCD 189 (320)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHSCC---CEEEEE----CSSHHHHHHHHHHHHHTT------CCEEECCHHHHTSSS
T ss_pred CccEEEEecC-cccHHHHHHHHHHHhhh---hhcccc----cCCHHHHHHHHHHHHhcC------Cccccchhhhhcccc
Confidence 4579999995 99998877776653323 246553 667788888888776532 223345678899999
Q ss_pred EEEEe
Q 013466 175 WALLI 179 (442)
Q Consensus 175 iVIi~ 179 (442)
+|+.+
T Consensus 190 iV~ta 194 (320)
T d1omoa_ 190 VLVTT 194 (320)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99875
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.80 E-value=0.42 Score=40.33 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccC--
Q 013466 95 KMVNIAVSGAAGMIANH-LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-- 171 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~-la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~-- 171 (442)
+++||+|||+ |.+|.. .+..+...+- ...+.-+ .|++.++++..+.++.. ..++.+..+.++
T Consensus 2 kkirigiIG~-G~~g~~~h~~~l~~~~~-----~~~i~~v-~d~~~~~~~~~~~~~~~--------~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 2 RKIRLGIVGC-GIAARELHLPALKNLSH-----LFEITAV-TSRTRSHAEEFAKMVGN--------PAVFDSYEELLESG 66 (181)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHTTTT-----TEEEEEE-ECSSHHHHHHHHHHHSS--------CEEESCHHHHHHSS
T ss_pred CCcEEEEEcC-CHHHHHHHHHHHHhCCC-----CeEEEEE-EeccHhhhhhhhccccc--------cceeeeeecccccc
Confidence 3579999995 999986 4666654221 1222211 25566666544443321 133444445454
Q ss_pred CCcEEEEe
Q 013466 172 DAEWALLI 179 (442)
Q Consensus 172 dADiVIi~ 179 (442)
+.|+|+++
T Consensus 67 ~id~v~I~ 74 (181)
T d1zh8a1 67 LVDAVDLT 74 (181)
T ss_dssp CCSEEEEC
T ss_pred ccceeecc
Confidence 67888886
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.74 E-value=0.73 Score=40.29 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=23.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.||.|+||+|+||..++..|++.|.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~ 27 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGY 27 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
Confidence 4899999999999999999999885
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=90.50 E-value=0.2 Score=41.77 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred CCEEEEEc-CCCchHHHHHHHHHHcCCCCCCCceEEEeccccc---hhhhHHHHHHHHhcccCCCcccEEEecCcccccC
Q 013466 96 MVNIAVSG-AAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER---SLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171 (442)
Q Consensus 96 ~~KI~IIG-A~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~---~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~ 171 (442)
..||+++| +..+|-.+++..+..-|. ++.+ ..... ..+... .+.++... ....+.++.+..++++
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~-----~i~~--~~P~~~~~~~~~~~-~~~~~~~~---~~~~i~~~~d~~~ai~ 71 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGM-----NFVA--CGPEELKPRSDVFK-RCQEIVKE---TDGSVSFTSNLEEALA 71 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTC-----EEEE--ESCGGGCCCHHHHH-HHHHHHHH---HCCEEEEESCHHHHHT
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC-----EEEE--ecchhhhhhhhHHH-HHHHHHhh---cCCceEEEecHHHhhh
Confidence 46999999 335788888888887653 2333 32111 111111 11112111 1236788888899999
Q ss_pred CCcEEEEeCC
Q 013466 172 DAEWALLIGA 181 (442)
Q Consensus 172 dADiVIi~ag 181 (442)
+||+|....-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997643
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.27 E-value=0.25 Score=37.48 Aligned_cols=69 Identities=12% Similarity=0.007 Sum_probs=44.4
Q ss_pred CEEEEEcCCCchHH-HHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cCcccccCCCc
Q 013466 97 VNIAVSGAAGMIAN-HLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (442)
Q Consensus 97 ~KI~IIGA~G~VG~-~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~~~eal~dAD 174 (442)
|||-+|| -|++|. .+|..|...|. .|.=. |..... ....|++.- +.++ ..+.+.++++|
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~-----~VsGS----D~~~~~---~t~~L~~~G------i~i~~gh~~~~i~~~d 62 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGN-----DVYGS----NIEETE---RTAYLRKLG------IPIFVPHSADNWYDPD 62 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTC-----EEEEE----CSSCCH---HHHHHHHTT------CCEESSCCTTSCCCCS
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCC-----eEEEE----eCCCCh---hHHHHHHCC------CeEEeeecccccCCCC
Confidence 6899999 598888 58999999886 24443 333221 122244332 2232 24567789999
Q ss_pred EEEEeCCcCC
Q 013466 175 WALLIGAKPR 184 (442)
Q Consensus 175 iVIi~ag~~~ 184 (442)
+||.+.++|.
T Consensus 63 ~vV~SsAI~~ 72 (89)
T d1j6ua1 63 LVIKTPAVRD 72 (89)
T ss_dssp EEEECTTCCT
T ss_pred EEEEecCcCC
Confidence 9999888764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.22 E-value=0.68 Score=41.25 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=47.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEE-EecC----------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN---------- 165 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~-i~~~---------- 165 (442)
+.|.|.||+++||.+++..|+..|. .+.+.. .++.+.++....++.+.. .++. +..|
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-----~Vvi~~---~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGA-----SVVVNY---GSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVAL 74 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-----EEEEEE---SSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-----EEEEEc---CCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHH
Confidence 4678999999999999999999885 254432 334455666666665332 1222 2222
Q ss_pred ---cccccCCCcEEEEeCCcC
Q 013466 166 ---PYELFEDAEWALLIGAKP 183 (442)
Q Consensus 166 ---~~eal~dADiVIi~ag~~ 183 (442)
..+.+..-|++|..+|..
T Consensus 75 ~~~~~~~~g~idilinnag~~ 95 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGME 95 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCCC
T ss_pred HHHHHHHcCCCcEEEeccccc
Confidence 133455789999988754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=1.3 Score=35.77 Aligned_cols=71 Identities=10% Similarity=0.023 Sum_probs=42.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cC----ccccc
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN----PYELF 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~----~~eal 170 (442)
-.|.|+|. |.+|..++..|...+. ++.+.+ .+++.......++.... ..+..+ ++ ....+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~-----~v~vId----~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i 69 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQ-----NVTVIS----NLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTC-----CEEEEE----CCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTT
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-----CEEEEe----ccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhcc
Confidence 47999995 9999999999998774 355533 23333333333332111 112221 11 14457
Q ss_pred CCCcEEEEeCC
Q 013466 171 EDAEWALLIGA 181 (442)
Q Consensus 171 ~dADiVIi~ag 181 (442)
.+||.||++.+
T Consensus 70 ~~a~~vi~~~~ 80 (153)
T d1id1a_ 70 DRCRAILALSD 80 (153)
T ss_dssp TTCSEEEECSS
T ss_pred ccCCEEEEccc
Confidence 88999998744
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=89.79 E-value=0.069 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|||.|+||+|.||++++..|...|.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~ 26 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV 26 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 6899999999999999999988774
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.54 E-value=0.45 Score=40.92 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++-||.|||| |.+|..-+......|-
T Consensus 28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA 53 (183)
T d1l7da1 28 PPARVLVFGV-GVAGLQAIATAKRLGA 53 (183)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcC-cHHHHHHHHHHHHcCC
Confidence 4679999996 9999998888887664
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=89.50 E-value=0.36 Score=41.61 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
-.+|+||| .|+||+.++..+..-+. .+.. +|... ........ . ......+..+.++.||+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~-----~v~~--~d~~~--~~~~~~~~--~--------~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDM-----DIDY--FDTHR--ASSSDEAS--Y--------QATFHDSLDSLLSVSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE--ECSSC--CCHHHHHH--H--------TCEECSSHHHHHHHCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhcc-----cccc--ccccc--cccchhhc--c--------cccccCCHHHHHhhCCe
Confidence 36999999 59999999998886553 2433 32221 11111100 0 11222345789999999
Q ss_pred EEEeCC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|++... .+...++ + |. +.+... .+++++||++
T Consensus 107 v~l~~plt~~T~~l-----i--~~-------~~l~~m-k~~a~lIN~s 139 (191)
T d1gdha1 107 FSLNAPSTPETRYF-----F--NK-------ATIKSL-PQGAIVVNTA 139 (191)
T ss_dssp EEECCCCCTTTTTC-----B--SH-------HHHTTS-CTTEEEEECS
T ss_pred EEecCCCCchHhhe-----e--cH-------HHhhCc-CCccEEEecC
Confidence 998632 2221222 1 11 112333 5899999998
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.37 E-value=0.83 Score=37.99 Aligned_cols=75 Identities=12% Similarity=0.039 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc---chhhhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE---RSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d---~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
..||+++|-..+|..+++..|..-|. .+.+...+ ..++.++ .+.+..... ...+.++.+..+++++
T Consensus 4 gl~Ia~VGD~~nv~~Sli~~l~~~g~-------~v~~~~P~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~d~~ea~~~ 72 (163)
T d1pvva2 4 GVKVVYVGDGNNVAHSLMIAGTKLGA-------DVVVATPEGYEPDEKVIK-WAEQNAAES---GGSFELLHDPVKAVKD 72 (163)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHTTC-------EEEEECCTTCCCCHHHHH-HHHHHHHHH---TCEEEEESCHHHHTTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC-------eEEEecccccCCChHHHH-HHHHhhhcc---cceEEEecCHHHHhhh
Confidence 46999999977888888888887553 23333211 1111111 222221111 1256778888999999
Q ss_pred CcEEEEeCC
Q 013466 173 AEWALLIGA 181 (442)
Q Consensus 173 ADiVIi~ag 181 (442)
||+|...--
T Consensus 73 adviy~~~~ 81 (163)
T d1pvva2 73 ADVIYTDVW 81 (163)
T ss_dssp CSEEEECCC
T ss_pred ccEEeecce
Confidence 999887643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.89 E-value=0.38 Score=41.17 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+| .|.||..++..+..-+. .|.. + |+...... ..+.. +.. .+..+.++.||+
T Consensus 44 ~k~vgiiG-~G~IG~~va~~~~~fg~-----~v~~--~--d~~~~~~~--~~~~~---------~~~-~~l~ell~~sDi 101 (184)
T d1ygya1 44 GKTVGVVG-LGRIGQLVAQRIAAFGA-----YVVA--Y--DPYVSPAR--AAQLG---------IEL-LSLDDLLARADF 101 (184)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTC-----EEEE--E--CTTSCHHH--HHHHT---------CEE-CCHHHHHHHCSE
T ss_pred ceeeeecc-ccchhHHHHHHhhhccc-----eEEe--e--cCCCChhH--HhhcC---------cee-ccHHHHHhhCCE
Confidence 36899999 59999999998876442 2433 2 33222211 11111 111 345788999999
Q ss_pred EEEeCC-cCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag-~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|++..- .+...++ + |.+ .+... ++++++|+++
T Consensus 102 v~~~~Plt~~T~~l-----i--n~~-------~l~~m-k~~a~lIN~s 134 (184)
T d1ygya1 102 ISVHLPKTPETAGL-----I--DKE-------ALAKT-KPGVIIVNAA 134 (184)
T ss_dssp EEECCCCSTTTTTC-----B--CHH-------HHTTS-CTTEEEEECS
T ss_pred EEEcCCCCchhhhh-----h--hHH-------HHhhh-CCCceEEEec
Confidence 998632 2221222 1 111 22333 5899999998
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=88.83 E-value=0.2 Score=43.30 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=25.0
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 92 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|++...||+|||| |-+|.+.|+.|...|.
T Consensus 2 ~~~~~~kVvVIGa-GiaGl~~A~~L~~~G~ 30 (268)
T d1c0pa1 2 MMHSQKRVVVLGS-GVIGLSSALILARKGY 30 (268)
T ss_dssp CCCCSCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEECc-cHHHHHHHHHHHHCCC
Confidence 4555679999996 9999999999999885
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=88.83 E-value=2.3 Score=37.21 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=64.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc------
Q 013466 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP------ 166 (442)
Q Consensus 93 ~~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~------ 166 (442)
+++...|.|+||+|+||..++..|+..|. ..|+|.-. .+.+.+.++....++.... .++.+...|
T Consensus 6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga----~~vvl~~R-~~~~~~~~~~~~~~l~~~g----~~v~~~~~Dv~d~~~ 76 (259)
T d2fr1a1 6 WKPTGTVLVTGGTGGVGGQIARWLARRGA----PHLLLVSR-SGPDADGAGELVAELEALG----ARTTVAACDVTDRES 76 (259)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTC----SEEEEEES-SGGGSTTHHHHHHHHHHTT----CEEEEEECCTTCHHH
T ss_pred cCCcCEEEEECCCcHHHHHHHHHHHHCCC----CEEEEEeC-CccCHHHHHHHHHHHHhcc----ccccccccccchHHH
Confidence 45556899999999999999999999885 12544211 1223345555555664321 123332111
Q ss_pred ----cccc---CCCcEEEEeCCcCCCCC---CcHH---hHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCC
Q 013466 167 ----YELF---EDAEWALLIGAKPRGPG---MERA---GLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (442)
Q Consensus 167 ----~eal---~dADiVIi~ag~~~kpg---~~r~---dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtN 223 (442)
.+.+ -+-|.||..+|.....- ++.. ..+..|..-...+.+.+... +.+.+++++.
T Consensus 77 ~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~--~~~~iv~~SS 144 (259)
T d2fr1a1 77 VRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL--DLTAFVLFSS 144 (259)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS--CCSEEEEEEE
T ss_pred HHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc--CCceEeeecc
Confidence 1112 24677888777543221 1211 22344554444455544442 4556666663
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=88.67 E-value=0.11 Score=48.96 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=89.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC--ccccc---
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYELF--- 170 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~--~~eal--- 170 (442)
|||.|+||+|.||++++..|+..+. +.+.. +|........+ .+.+.. -..++... .| +++.+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~----~vv~~--~d~~~~~~~~~----~~~~~~--~~~~~~~~~~Dl~d~~~l~~~ 68 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ----DTVVN--IDKLTYAGNLE----SLSDIS--ESNRYNFEHADICDSAEITRI 68 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS----CEEEE--EECCCTTCCGG----GGTTTT--TCTTEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----CEEEE--EeCCCccccHH----HHHhhh--hcCCcEEEEccCCCHHHHHHH
Confidence 6999999999999999999998875 12322 22110001111 111111 11234432 22 22222
Q ss_pred -C--CCcEEEEeCCcCCCCC--CcHHhHHHHHHHHHHHHHHHHHhhhC-------CCeEEEEeCCchhHHHHH--HH---
Q 013466 171 -E--DAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVAS-------RNVKVIVVGNPCNTNALI--CL--- 233 (442)
Q Consensus 171 -~--dADiVIi~ag~~~kpg--~~r~dll~~N~~Ii~~i~~~I~~~a~-------p~a~vivvtNPvd~lt~~--~~--- 233 (442)
+ +.|+||.+|+.+..+. .+-.+.+..|......+...+.++.. ....++.++--. +.... ..
T Consensus 69 ~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~ 147 (361)
T d1kewa_ 69 FEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDE-VYGDLPHPDEVE 147 (361)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGG-GGCCCCCGGGSC
T ss_pred HHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccce-eeCCCccCCccc
Confidence 2 5899999887532111 12234566776666666665544310 112455544211 00000 00
Q ss_pred ---------HHCCCCCcce-eeccchhhHHHHHHHHHHHhCCCcCcccceEEEeecC--CCcccccccccccCcchh
Q 013466 234 ---------KNAPSIPAKN-FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS--TTQVPDFLNARINGLPVK 298 (442)
Q Consensus 234 ---------k~s~~~p~kv-ig~gT~LDs~R~~~~lA~~lgv~p~~V~~~~ViG~HG--~t~vp~~S~a~I~G~p~~ 298 (442)
.... ..++. .|. +=+...++-...+++.|++...++...|+|.++ ++.+|.+-..-..|+|+.
T Consensus 148 ~~~~~~~~~e~~~-~~p~s~Yg~-sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~ 222 (361)
T d1kewa_ 148 NSVTLPLFTETTA-YAPSSPYSA-SKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLP 222 (361)
T ss_dssp TTSCCCCBCTTSC-CCCCSHHHH-HHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEE
T ss_pred cccCCCCcccCCC-CCCCCHHHH-HHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcE
Confidence 0000 00000 111 112333444445667788887787667788655 345666554444565543
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=88.57 E-value=0.61 Score=39.59 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCEEEEEcCC-CchHHHHHHHHHHcCCCCCCCceEEEeccccchh--hhHHHHHHHHhcccCCCcccEEEecCcccccCC
Q 013466 96 MVNIAVSGAA-GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL--QALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (442)
Q Consensus 96 ~~KI~IIGA~-G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~--~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~d 172 (442)
..||+++|=. .+|..+++..+..-|. .+++...+.-. +.+...+.+.... ....+.++.+..+++++
T Consensus 5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~-------~l~~~~P~~~~~~~~~~~~~~~~~~~---~g~~~~~~~d~~~a~~~ 74 (183)
T d1duvg2 5 EMTLVYAGDARNNMGNSMLEAAALTGL-------DLRLVAPQACWPEAALVTECRALAQQ---NGGNITLTEDVAKGVEG 74 (183)
T ss_dssp GCEEEEESCTTSHHHHHHHHHHHHHCC-------EEEEECCGGGCCCHHHHHHHHHHHHH---TTCEEEEESCHHHHHTT
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC-------EEEEEechHhhhhHHHHHHHHHHHHh---cCCceEEEechhhcccc
Confidence 4799999942 3688888888887663 33333222110 1122222222211 12357788888999999
Q ss_pred CcEEEEeCC
Q 013466 173 AEWALLIGA 181 (442)
Q Consensus 173 ADiVIi~ag 181 (442)
+|+|....-
T Consensus 75 aDvvyt~~w 83 (183)
T d1duvg2 75 ADFIYTDVW 83 (183)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEEeh
Confidence 999987644
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.43 E-value=0.2 Score=42.94 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|.||+|.| .|.||..++..|...+-
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~d 25 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPD 25 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTT
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCC
Confidence 68999999 69999999999988653
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=88.35 E-value=0.62 Score=41.46 Aligned_cols=76 Identities=13% Similarity=-0.042 Sum_probs=45.1
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe--cC------
Q 013466 96 MVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN------ 165 (442)
Q Consensus 96 ~~KI~IIGA~G--~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~--~~------ 165 (442)
-+++.|+||+| +||.+++..|+..|. .|++.. ++++ ++..+.++....... .+... ++
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga-----~V~i~~----r~~~-~~~~~~~l~~~~~~~--~~~~~d~~~~~~~~~ 72 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGA-----TLAFTY----LNES-LEKRVRPIAQELNSP--YVYELDVSKEEHFKS 72 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-----EEEEEE----SSTT-THHHHHHHHHHTTCC--CEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEEe----CCHH-HHHHHHHHHhhCCce--eEeeecccchhhHHH
Confidence 45889999877 699999999999885 366643 3322 222333443322111 11111 11
Q ss_pred ----cccccCCCcEEEEeCCcC
Q 013466 166 ----PYELFEDAEWALLIGAKP 183 (442)
Q Consensus 166 ----~~eal~dADiVIi~ag~~ 183 (442)
..+.+...|++|..+|..
T Consensus 73 ~~~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 73 LYNSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp HHHHHHHHTSCEEEEEECCCCC
T ss_pred HHHHHHHHcCCCCeEEeecccc
Confidence 144567899999887754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.62 E-value=1.2 Score=37.26 Aligned_cols=45 Identities=20% Similarity=0.086 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
+--+|.|+|| |.+|...+..+...+.. .|.. +|.++++++ .+.++
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~----~Vi~----~d~~~~kl~-~a~~l 71 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGAS----RIIG----VGTHKDKFP-KAIEL 71 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCS----EEEE----ECSCGGGHH-HHHHT
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCc----eeec----cCChHHHHH-HHHHc
Confidence 3458999996 99999999998887752 3444 355667765 55555
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.55 E-value=0.78 Score=37.74 Aligned_cols=70 Identities=23% Similarity=0.235 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCC
Q 013466 96 MVNIAVSGAAGM--IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (442)
Q Consensus 96 ~~KI~IIGA~G~--VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dA 173 (442)
..||++||=..+ |..+++..+..-|. .+.+ .. .+.....-+ ... . ....+++++.+..+++++|
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~-----~~~~-~~-p~~~~~~~~-~~~--~----~~~~~~~~~~d~~eai~~a 68 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRP-----KLVY-LI-SPQLLRARK-EIL--D----ELNYPVKEVENPFEVINEV 68 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCC-----SEEE-EE-CCGGGCCCH-HHH--T----TCCSCEEEESCGGGTGGGC
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCC-----eeEE-Ee-cccccccch-hhc--c----cCCCeEEEEeCHHHHhhcC
Confidence 469999996444 89999888887653 1322 11 121111111 111 1 1224678888999999999
Q ss_pred cEEEEe
Q 013466 174 EWALLI 179 (442)
Q Consensus 174 DiVIi~ 179 (442)
|+|..+
T Consensus 69 Dvvy~~ 74 (153)
T d1pg5a2 69 DVLYVT 74 (153)
T ss_dssp SEEEEE
T ss_pred CeEEEe
Confidence 998876
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.55 E-value=0.19 Score=46.51 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVL 122 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~ 122 (442)
..++||+|||| |..|-+.|..|+..+..
T Consensus 2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~ 29 (335)
T d2gv8a1 2 PTIRKIAIIGA-GPSGLVTAKALLAEKAF 29 (335)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHTTTCC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHhCCC
Confidence 45679999996 99999999999877754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.51 E-value=0.12 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|||+|||| |-+|.+.|+.|++.+.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCC
Confidence 69999996 9999999999998874
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.41 E-value=0.67 Score=40.26 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec----------C--
Q 013466 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI----------N-- 165 (442)
Q Consensus 98 KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~----------~-- 165 (442)
+|-||| -|+.|..++..+...++- .+.++-++.|. +.+. ..+.. .++.+.. +
T Consensus 3 ~IkViG-vGGaG~n~vn~~~~~~~~----~v~~iainTD~--~~L~-----~~~~~----~ki~iG~~~t~G~Gagg~p~ 66 (198)
T d1rq2a1 3 VIKVVG-IGGGGVNAVNRMIEQGLK----GVEFIAINTDA--QALL-----MSDAD----VKLDVGRDSTRGLGAGADPE 66 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCC----SEEEEEEESCH--HHHH-----HCCCS----EEEECCTTTC-----CCCHH
T ss_pred eEEEEE-eCchHHHHHHHHHHcCCC----CceEEEEcchH--HHHh-----cCCcc----hhhccccccccCCCcCcChh
Confidence 678999 699999999999998863 35665555442 2222 12111 1122210 0
Q ss_pred ------------cccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCc
Q 013466 166 ------------PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (442)
Q Consensus 166 ------------~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNP 224 (442)
-.+.++++|+||+++|.. |.+.. .-+|++.++++.... -.+-++|-|
T Consensus 67 ~g~~aa~e~~~~I~~~l~~~d~vfi~AGlG---GgTGt----GaaPviA~iake~g~-----l~v~ivt~P 125 (198)
T d1rq2a1 67 VGRKAAEDAKDEIEELLRGADMVFVTAGEG---GGTGT----GGAPVVASIARKLGA-----LTVGVVTRP 125 (198)
T ss_dssp HHHHHHHHTHHHHHHHHTTCSEEEEEEETT---SSHHH----HHHHHHHHHHHHHTC-----EEEEEEEEC
T ss_pred hhHhhHHHHHHHHHHHhcCCCEEEEEEecC---CCCCc----chHHHHHHHHHHcCC-----cEEEEEecC
Confidence 156799999999998843 22221 226888888876432 245666666
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.10 E-value=1.3 Score=37.12 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc--cc-----
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--YE----- 168 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~--~e----- 168 (442)
--.|+|+|+ |.+|...+..+...+.. .|.. +|.++++++ .+.++-.... +.....+ .+
T Consensus 30 g~tVlI~G~-GgvGl~ai~~ak~~G~~----~Vi~----vd~~~~kl~-~Ak~~GA~~~-----in~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 30 GSTCVVFGL-GGVGLSVIMGCKSAGAS----RIIG----IDLNKDKFE-KAMAVGATEC-----ISPKDSTKPISEVLSE 94 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCS----EEEE----ECSCGGGHH-HHHHHTCSEE-----ECGGGCSSCHHHHHHH
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCc----eEEE----ecCcHHHHH-HHHhcCCcEE-----ECccccchHHHHHHHH
Confidence 347999995 99999999999887742 2444 366777877 7776642210 0001111 11
Q ss_pred -ccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 169 -LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 169 -al~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.=.++|+||.+.|.+ ..+.+-. .....+.+.+++++.|.
T Consensus 95 ~~g~G~d~vi~~~g~~---------------~~~~~a~---~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 95 MTGNNVGYTFEVIGHL---------------ETMIDAL---ASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp HHTSCCCEEEECSCCH---------------HHHHHHH---TTSCTTTCEEEECSCCC
T ss_pred hccccceEEEEeCCch---------------HHHHHHH---HHhhcCCeEEEEEEccc
Confidence 225799999886621 2222222 22222458888888764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=86.99 E-value=0.17 Score=46.85 Aligned_cols=26 Identities=35% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++|.|+||+|.+|++++..|+..|.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~ 28 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGH 28 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCC
Confidence 46899999999999999999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.98 E-value=0.37 Score=40.59 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 95 ~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+--+|.|+|| |.||...++.+...|.. .|.. .|.++++++ .+.++-
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~----~Vi~----~d~~~~r~~-~a~~lG 72 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAG----RIIG----VGSRPICVE-AAKFYG 72 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCS----CEEE----ECCCHHHHH-HHHHHT
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhccccc----cccc----ccchhhhHH-HHHhhC
Confidence 3458999996 99999988888876641 2544 355666655 555553
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=86.77 E-value=0.53 Score=40.78 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=60.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEec------------
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI------------ 164 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~------------ 164 (442)
+||.||| .|+.|..++..+...++-+ +.+..++.|. +. |.+.. ...++.+..
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~----v~~iainTD~--~~-------L~~~~--a~~ki~iG~~~t~G~G~g~~p 64 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHG----VEFVAVNTDL--QV-------LEASN--ADVKIQIGENITRGLGAGGRP 64 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTT----EEEEEEESCH--HH-------HHTCC--CSEEEECCTTTTTTSCCTTCH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCc----eEEEEEcCCH--HH-------HhcCC--cceEEecccccCCCcccccCc
Confidence 5899999 5999999999999888743 5565555542 22 22221 111222221
Q ss_pred ------------CcccccCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCch
Q 013466 165 ------------NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (442)
Q Consensus 165 ------------~~~eal~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPv 225 (442)
.-.+.+.++|+||+++|.. |.+.. .-++++.++++... --.+-++|=|-
T Consensus 65 ~~g~~aa~e~~~~I~~~l~~~d~vfi~AGlG---GgTGt----gaapviA~~ake~g-----~lvv~ivtlPF 125 (194)
T d1w5fa1 65 EIGEQAALESEEKIREVLQDTHMVFITAGFG---GGTGT----GASPVIAKIAKEMG-----ILTVAIVTTPF 125 (194)
T ss_dssp HHHHHHHHHTHHHHHHHTTTCSEEEEEEETT---SSHHH----HHHHHHHHHHHHTT-----CEEEEEEEECC
T ss_pred hhhHhHHHHHHHHHHHHhcCCCeEEEEEecC---CCccc----chHHHHHHHHHHcC-----CceEEEEeech
Confidence 1256699999999998743 22211 12577777776522 22455666663
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.36 E-value=2.1 Score=35.12 Aligned_cols=127 Identities=14% Similarity=0.060 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEe-cC---cccccC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---PYELFE 171 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~-~~---~~eal~ 171 (442)
-.+|.|+|| |.||...++.+...|. +.|.. +.+.++++ .+.++-. ...+. .+ .....+
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~Ga----~~i~~-----~~~~~~~~-~a~~lGa-------d~~i~~~~~~~~~~~~~ 92 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAMGA----HVVAF-----TTSEAKRE-AAKALGA-------DEVVNSRNADEMAAHLK 92 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC----EEEEE-----ESSGGGHH-HHHHHTC-------SEEEETTCHHHHHTTTT
T ss_pred CCEEEEecc-chHHHHHHHHhhcccc----cchhh-----ccchhHHH-HHhccCC-------cEEEECchhhHHHHhcC
Confidence 468999996 9999998888887764 12332 33444443 4444431 11121 11 133456
Q ss_pred CCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHH-HHHHH-CCCCCcceeec--c
Q 013466 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL-ICLKN-APSIPAKNFHA--L 247 (442)
Q Consensus 172 dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~-~~~k~-s~~~p~kvig~--g 247 (442)
+.|+||.+.|.+. . +. ..+.-. .+++.++.++-|.+.... ..... ... .+++|+ +
T Consensus 93 ~~D~vid~~g~~~----~-----------~~---~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~l~~k~--~~i~Gs~~~ 151 (168)
T d1uufa2 93 SFDFILNTVAAPH----N-----------LD---DFTTLL-KRDGTMTLVGAPATPHKSPEVFNLIMKR--RAIAGSMIG 151 (168)
T ss_dssp CEEEEEECCSSCC----C-----------HH---HHHTTE-EEEEEEEECCCC-------CHHHHHTTT--CEEEECCSC
T ss_pred CCceeeeeeecch----h-----------HH---HHHHHH-hcCCEEEEeccCCCCcccccHHHHHHCC--cEEEEEeec
Confidence 8999999877432 0 11 112233 478999998876543221 11111 111 245554 5
Q ss_pred chhhHHHHHHHHHH
Q 013466 248 TRLDENRAKCQLAL 261 (442)
Q Consensus 248 T~LDs~R~~~~lA~ 261 (442)
+.-|..++-.++++
T Consensus 152 ~~~d~~e~l~l~a~ 165 (168)
T d1uufa2 152 GIPETQEMLDFCAE 165 (168)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56666666665554
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.16 E-value=0.28 Score=41.04 Aligned_cols=25 Identities=28% Similarity=0.093 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||+|||| |..|...|..|.+.|+
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~ 28 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGY 28 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCC
Confidence 459999996 9999999999999886
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=86.07 E-value=0.9 Score=38.59 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+.||+|||| |..|.+.|..|+..|.
T Consensus 43 ~k~V~IIGa-GPAGL~AA~~la~~G~ 67 (179)
T d1ps9a3 43 KKNLAVVGA-GPAGLAFAINAAARGH 67 (179)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTC
T ss_pred CcEEEEECc-cHHHHHHHHHHHhhcc
Confidence 579999995 9999999999999885
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.05 E-value=4.9 Score=32.24 Aligned_cols=118 Identities=12% Similarity=-0.006 Sum_probs=66.5
Q ss_pred ccCCCEEEEEcCC---CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc
Q 013466 93 WKKMVNIAVSGAA---GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL 169 (442)
Q Consensus 93 ~~~~~KI~IIGA~---G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea 169 (442)
..++..|+||||+ +..|+.++..|...|. +| +.+ +...+.. . ......+..+.
T Consensus 16 L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~-----~v--~pV--nP~~~~i-------~--------G~~~~~sl~dl 71 (139)
T d2d59a1 16 LTRYKKIALVGASPKPERDANIVMKYLLEHGY-----DV--YPV--NPKYEEV-------L--------GRKCYPSVLDI 71 (139)
T ss_dssp HHHCCEEEEETCCSCTTSHHHHHHHHHHHTTC-----EE--EEE--CTTCSEE-------T--------TEECBSSGGGC
T ss_pred HhcCCeEEEEeecCCCCCchHHHHHHHHHCCC-----EE--EEE--CCccccc-------C--------CCccccccccc
Confidence 4456789999987 5799999999999875 13 333 2211111 1 12222333333
Q ss_pred cCCCcEEEEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeCCchhHHHHHHHHHCCCCCcceeec-cc
Q 013466 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHA-LT 248 (442)
Q Consensus 170 l~dADiVIi~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvtNPvd~lt~~~~k~s~~~p~kvig~-gT 248 (442)
-..-|+|++... .+.+.++.+++.+. +..++++..+.-.+.....+ +.. ++ +++|- |.
T Consensus 72 p~~iD~v~i~vp----------------~~~~~~~~~e~~~~-g~k~v~~~~G~~~ee~~~~a-~~~-gi--~vig~~C~ 130 (139)
T d2d59a1 72 PDKIEVVDLFVK----------------PKLTMEYVEQAIKK-GAKVVWFQYNTYNREASKKA-DEA-GL--IIVANRCM 130 (139)
T ss_dssp SSCCSEEEECSC----------------HHHHHHHHHHHHHH-TCSEEEECTTCCCHHHHHHH-HHT-TC--EEEESCCH
T ss_pred CccceEEEEEeC----------------HHHHHHHHHHHHHh-CCCEEEEeccccCHHHHHHH-HHC-CC--EEEcCCcC
Confidence 336899888733 34555666555564 46666554444444444444 334 34 56764 65
Q ss_pred hhhHHHH
Q 013466 249 RLDENRA 255 (442)
Q Consensus 249 ~LDs~R~ 255 (442)
+.+..|+
T Consensus 131 ~v~~~rl 137 (139)
T d2d59a1 131 MREHERL 137 (139)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 5566664
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.47 Score=41.83 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=34.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
+.+.|+||+++||.+++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 6 KvalITGas~GIG~aia~~la~~G~-----~V~~~----~r~~~~~~~~~~~l~ 50 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGA-----SAVLL----DLPNSGGEAQAKKLG 50 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-----EEEEE----ECTTSSHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEEE----eCChHHHHHHHHHhC
Confidence 3556999999999999999999885 25553 556677777777764
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.32 E-value=0.27 Score=43.04 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++||+|||| |-.|.++|..|.+.|+
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi 25 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAGI 25 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC
Confidence 579999996 9999999999999885
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=85.10 E-value=0.34 Score=42.26 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
..||+|||| |-.|.++|..|...|+
T Consensus 4 ~~kV~IiGa-G~aGl~~A~~L~~~G~ 28 (265)
T d2voua1 4 TDRIAVVGG-SISGLTAALMLRDAGV 28 (265)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTC
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCC
Confidence 469999996 9999999999999885
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.98 E-value=1.3 Score=37.50 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcE
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADi 175 (442)
..+|+|+| .|.||..++..+..-+. .+.. +|... .. ... .........+.++.||+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~-----~v~~--~d~~~--~~-------------~~~-~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESLGM-----YVYF--YDIEN--KL-------------PLG-NATQVQHLSDLLNMSDV 99 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--ECSSC--CC-------------CCT-TCEECSCHHHHHHHCSE
T ss_pred ceEEEEee-cccchhhhhhhcccccc-----eEee--ccccc--cc-------------hhh-hhhhhhhHHHHHhhccc
Confidence 36999999 59999999998887654 2333 32211 10 000 11122346788999999
Q ss_pred EEEeCCc-CCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 176 ALLIGAK-PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 176 VIi~ag~-~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
|++.... +...++= |.+ .++.. ++++++|+++
T Consensus 100 i~i~~plt~~T~~li-------~~~-------~l~~m-k~~a~lIN~a 132 (188)
T d1sc6a1 100 VSLHVPENPSTKNMM-------GAK-------EISLM-KPGSLLINAS 132 (188)
T ss_dssp EEECCCSSTTTTTCB-------CHH-------HHHHS-CTTEEEEECS
T ss_pred eeecccCCcchhhhc-------cHH-------HHhhC-CCCCEEEEcC
Confidence 9997432 2211221 111 22333 5899999998
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=84.77 E-value=0.64 Score=38.55 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
|.+|+|+|++|.||...+--+-...- ...+..+-...|-+.+..++.++.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~lsa~~N~~~L~~q~~ef~ 51 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLD-----RYQVIALTANRNVKDLADAAKRTN 51 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGG-----GEEEEEEEESSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCC-----CcEEEEEEeCCCHHHHHHHHHhhc
Confidence 67999999999999998887776431 244444445667777777776653
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=84.52 E-value=0.76 Score=38.15 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
|.||+|+|++|.||...+--+.+..- ...+..+-...|-+.+..++.++.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d-----~f~v~~Lsa~~N~~~L~~q~~~f~ 50 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPE-----HFRVVALVAGKNVTRMVEQCLEFS 50 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT-----TEEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCC-----CcEEEEEEecCcHHHHHHHHHHHh
Confidence 56899999999999998888776541 233443445667777777777665
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.46 E-value=1.2 Score=39.39 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=22.4
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHHcCC
Q 013466 96 MVNIAVSGAAG--MIANHLLFKLAAGEV 121 (442)
Q Consensus 96 ~~KI~IIGA~G--~VG~~la~~L~~~~l 121 (442)
-+++.|.||+| +||.+++..|+..|.
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga 35 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA 35 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCC
Confidence 35788999877 799999999999885
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=84.02 E-value=0.52 Score=41.92 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccc-cCCCc
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYEL-FEDAE 174 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~ea-l~dAD 174 (442)
-.+|+|-| .|+||+.++..|...|. .++. . |.+.+.+.....+.. .... ...+. -.+||
T Consensus 39 g~~v~IqG-~GnVG~~~a~~L~~~Ga-----kvv~--~--d~~~~~~~~~~~~~g---------~~~~-~~~~~~~~~cD 98 (230)
T d1leha1 39 GLAVSVQG-LGNVAKALCKKLNTEGA-----KLVV--T--DVNKAAVSAAVAEEG---------ADAV-APNAIYGVTCD 98 (230)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--E--CSCHHHHHHHHHHHC---------CEEC-CGGGTTTCCCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC-----EEEe--e--cccHHHHHHHHHhcC---------Cccc-CCccccccccc
Confidence 46999999 69999999999999885 1333 2 334445443332221 1111 22333 34899
Q ss_pred EEEEeCC
Q 013466 175 WALLIGA 181 (442)
Q Consensus 175 iVIi~ag 181 (442)
+++-+|.
T Consensus 99 Il~PcA~ 105 (230)
T d1leha1 99 IFAPCAL 105 (230)
T ss_dssp EEEECSC
T ss_pred Eeccccc
Confidence 9888764
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=84.00 E-value=0.31 Score=43.32 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.++.||+|||| |..|.+.|+.|++.|.
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~ 54 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAGH 54 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCCC
Confidence 34679999995 9999999999999885
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.88 E-value=0.66 Score=39.53 Aligned_cols=86 Identities=22% Similarity=0.219 Sum_probs=51.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|.||..++..+..-|. .|.. + |+... +.. .....+..+.+++||+|
T Consensus 43 k~vgIiG-~G~IG~~va~~l~~~g~-----~v~~--~--d~~~~----------~~~------~~~~~~l~ell~~sDiv 96 (181)
T d1qp8a1 43 EKVAVLG-LGEIGTRVGKILAALGA-----QVRG--F--SRTPK----------EGP------WRFTNSLEEALREARAA 96 (181)
T ss_dssp CEEEEES-CSTHHHHHHHHHHHTTC-----EEEE--E--CSSCC----------CSS------SCCBSCSHHHHTTCSEE
T ss_pred ceEEEec-cccccccceeeeecccc-----cccc--c--ccccc----------ccc------eeeeechhhhhhccchh
Confidence 5899999 59999999999987664 2433 2 32211 011 11123567899999999
Q ss_pred EEeCCcCCCCCCcHHhHHHHHHHHHHHHHHHHHhhhCCCeEEEEeC
Q 013466 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (442)
Q Consensus 177 Ii~ag~~~kpg~~r~dll~~N~~Ii~~i~~~I~~~a~p~a~vivvt 222 (442)
++.. |..+. ++ .++ |. +.++.. .+++++|+++
T Consensus 97 ~~~~--pl~~~-t~-~li--~~-------~~l~~m-k~~ailIN~~ 128 (181)
T d1qp8a1 97 VCAL--PLNKH-TR-GLV--KY-------QHLALM-AEDAVFVNVG 128 (181)
T ss_dssp EECC--CCSTT-TT-TCB--CH-------HHHTTS-CTTCEEEECS
T ss_pred hccc--ccccc-cc-ccc--cc-------ceeeec-cccceEEecc
Confidence 9863 22221 11 111 11 233443 5789999987
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=83.49 E-value=0.89 Score=40.11 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCC--chHHHHHHHHHHcCCCCCCCceEEE
Q 013466 95 KMVNIAVSGAAG--MIANHLLFKLAAGEVLGPDQPIALK 131 (442)
Q Consensus 95 ~~~KI~IIGA~G--~VG~~la~~L~~~~l~~~~~~I~L~ 131 (442)
+-++|.|.||+| +||.+++..|+..|. .|.|.
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga-----~Vil~ 38 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGA-----QLVLT 38 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTC-----EEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCC-----EEEEE
Confidence 345899999766 499999999999885 36664
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.47 E-value=3.7 Score=35.71 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHH
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV 145 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~ 145 (442)
|++|.|+||+++||..++..|+...--+. .|.+. ++++++++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~----~r~~~~~~~~ 45 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTT----CRNREQAKEL 45 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEE----ESCTTSCHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEE----ECCHHHHHHH
Confidence 56799999999999999998875322111 25553 4556666543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=83.22 E-value=0.29 Score=42.47 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
|||+|||| |..|.+.|..|.+.|.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~ 24 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT 24 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC
Confidence 68999996 9999999999999885
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.15 E-value=1.3 Score=36.77 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHh
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~ 150 (442)
--+|.|+|| |.||...+..+...+.. .+.. .|.++++++ .+.++-
T Consensus 29 g~~VlI~G~-G~iG~~~~~~ak~~g~~----~v~~----~~~~~~k~~-~a~~~G 73 (174)
T d1f8fa2 29 ASSFVTWGA-GAVGLSALLAAKVCGAS----IIIA----VDIVESRLE-LAKQLG 73 (174)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHHTCS----EEEE----EESCHHHHH-HHHHHT
T ss_pred CCEEEEeCC-CHHHhhhhhcccccccc----eeee----eccHHHHHH-HHHHcC
Confidence 458999996 99999999988877642 2433 244555655 555553
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.91 E-value=0.19 Score=42.87 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~ 120 (442)
++||+|.| .|.||..++..|...+
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~ 25 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQD 25 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCT
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCC
Confidence 36999999 6999999999887755
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=82.08 E-value=3.2 Score=34.45 Aligned_cols=71 Identities=11% Similarity=-0.013 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCc--------c
Q 013466 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP--------Y 167 (442)
Q Consensus 96 ~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~--------~ 167 (442)
--+|.|+|+ |.||...+..+...|- ..|.. .|.++++++ .+.++-.... +.....+ .
T Consensus 29 G~~VlV~G~-G~iGl~a~~~ak~~Ga----~~Vi~----~d~~~~r~~-~a~~~Ga~~~-----i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 29 GSTCAVFGL-GCVGLSAIIGCKIAGA----SRIIA----IDINGEKFP-KAKALGATDC-----LNPRELDKPVQDVITE 93 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTC----SEEEE----ECSCGGGHH-HHHHTTCSEE-----ECGGGCSSCHHHHHHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHHhCC----ceeee----eccchHHHH-HHHHhCCCcc-----cCCccchhhhhhhHhh
Confidence 358999995 9999999998888774 12444 355666765 6666532110 0000111 1
Q ss_pred cccCCCcEEEEeCC
Q 013466 168 ELFEDAEWALLIGA 181 (442)
Q Consensus 168 eal~dADiVIi~ag 181 (442)
..-.++|+||-+.|
T Consensus 94 ~~~~G~d~vie~~G 107 (174)
T d1e3ia2 94 LTAGGVDYSLDCAG 107 (174)
T ss_dssp HHTSCBSEEEESSC
T ss_pred hhcCCCcEEEEecc
Confidence 12367899999877
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=81.25 E-value=0.45 Score=41.10 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=22.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
+||+|||| |..|.+.|+.|++.|+
T Consensus 2 KkV~IIGa-G~aGL~aA~~La~~G~ 25 (373)
T d1seza1 2 KRVAVIGA-GVSGLAAAYKLKIHGL 25 (373)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTSC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC
Confidence 58999996 9999999999999885
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.09 E-value=0.53 Score=41.14 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
++..||+|||| |--|-+.|..|.+.|.
T Consensus 3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~ 29 (449)
T d2dw4a2 3 KKTGKVIIIGS-GVSGLAAARQLQSFGM 29 (449)
T ss_dssp SCCCEEEEECC-BHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhCCC
Confidence 45679999996 9999999999999885
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=80.98 E-value=0.91 Score=39.17 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=38.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHHhcccCCCcccEEEecCcccccCCCcEE
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL~~~~~~~~~~v~i~~~~~eal~dADiV 176 (442)
.+|+||| .|+||..++..|..-|. .|.. +|... .. . .. .+.. . ..+..+.+++||+|
T Consensus 44 k~vgIiG-~G~IG~~va~~l~~fg~-----~V~~--~d~~~--~~-~-~~---~~~~-~-------~~~l~~~l~~sDii 100 (197)
T d1j4aa1 44 QVVGVVG-TGHIGQVFMQIMEGFGA-----KVIT--YDIFR--NP-E-LE---KKGY-Y-------VDSLDDLYKQADVI 100 (197)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTC-----EEEE--ECSSC--CH-H-HH---HTTC-B-------CSCHHHHHHHCSEE
T ss_pred CeEEEec-ccccchhHHHhHhhhcc-----cccc--cCccc--cc-c-cc---ccee-e-------eccccccccccccc
Confidence 5899999 59999999999987553 2433 33222 11 1 10 1111 0 13457889999999
Q ss_pred EEeC
Q 013466 177 LLIG 180 (442)
Q Consensus 177 Ii~a 180 (442)
++..
T Consensus 101 ~~~~ 104 (197)
T d1j4aa1 101 SLHV 104 (197)
T ss_dssp EECS
T ss_pred cccC
Confidence 9873
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.58 E-value=0.5 Score=42.05 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=22.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 013466 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (442)
Q Consensus 97 ~KI~IIGA~G~VG~~la~~L~~~~l 121 (442)
.||+|||| |.+|.++|..|...|+
T Consensus 3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~ 26 (292)
T d1k0ia1 3 TQVAIIGA-GPSGLLLGQLLHKAGI 26 (292)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHHTC
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCC
Confidence 38999996 9999999999999996
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.58 E-value=0.61 Score=38.38 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=31.0
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhhHHHHHHHH
Q 013466 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (442)
Q Consensus 94 ~~~~KI~IIGA~G~VG~~la~~L~~~~l~~~~~~I~L~l~d~d~~~~~l~g~a~DL 149 (442)
++-.+|.|+|| |.||...+..+...|. .+.. +|+++++++ .+.++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~-----~Vi~----~~~~~~~~~-~a~~~ 70 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGL-----HVAA----IDIDDAKLE-LARKL 70 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-----EEEE----EESCHHHHH-HHHHT
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCC-----ccce----ecchhhHHH-hhhcc
Confidence 33468999996 9999999998888773 2433 255666654 55554
|