Citrus Sinensis ID: 013467
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | 2.2.26 [Sep-21-2011] | |||||||
| Q8NBZ7 | 420 | UDP-glucuronic acid decar | yes | no | 0.692 | 0.728 | 0.650 | 1e-117 | |
| Q5R885 | 420 | UDP-glucuronic acid decar | yes | no | 0.692 | 0.728 | 0.650 | 1e-117 | |
| Q91XL3 | 420 | UDP-glucuronic acid decar | yes | no | 0.692 | 0.728 | 0.650 | 1e-117 | |
| Q5PQX0 | 420 | UDP-glucuronic acid decar | yes | no | 0.692 | 0.728 | 0.650 | 1e-117 | |
| Q6GMI9 | 418 | UDP-glucuronic acid decar | yes | no | 0.692 | 0.732 | 0.640 | 1e-115 | |
| Q6DF08 | 421 | UDP-glucuronic acid decar | yes | no | 0.692 | 0.726 | 0.633 | 1e-114 | |
| Q57664 | 305 | Putative UDP-glucose 4-ep | yes | no | 0.644 | 0.934 | 0.318 | 3e-31 | |
| Q9ZAE8 | 320 | dTDP-glucose 4,6-dehydrat | yes | no | 0.660 | 0.912 | 0.307 | 7e-29 | |
| A0R5C5 | 313 | UDP-glucose 4-epimerase O | yes | no | 0.680 | 0.961 | 0.322 | 8e-29 | |
| O34886 | 316 | Uncharacterized UDP-gluco | yes | no | 0.651 | 0.911 | 0.296 | 1e-28 |
| >sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Homo sapiens (taxid: 9606) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/306 (64%), Positives = 236/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 147
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 148 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 207
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+G RM ++
Sbjct: 208 EVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMN 267
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 268 DGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEH 327
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + + I+F P +DDP +R+PDI +AK LLGWEP V L +GL K ++
Sbjct: 328 TILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQ 387
Query: 418 DFRQRI 423
F + +
Sbjct: 388 YFSREL 393
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Danio rerio (taxid: 7955) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 211 EVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 270
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 271 DGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEH 330
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
++++ A+++++ + +I F +DDP +RKPDI +AK LLGWEP V L +GL K +
Sbjct: 331 SIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIH 390
Query: 418 DFRQRI 423
FR+ +
Sbjct: 391 YFRKEL 396
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Xenopus tropicalis (taxid: 8364) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 23/308 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTGGAGF+GSH+VD+LI VI++DN TG K N+ NP E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS- 231
E V+ + H A + + NPV NV+GT+N+L + ++ ++ ++S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 232 -EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYG+P P E + PI S Y K E Y+R G+E I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 291 GPRMC-IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LMRLMEGEHVGP 348
G R + V+S F+ + L+ + ++GDG QTR F +V D+ + LM L +
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNEI-- 229
Query: 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSL 408
N+G E ++ EL +++ I + + E + ++ DI +A E LGW+P++ L
Sbjct: 230 VNIGTGKETSVNELFDIIKHEIGFRGEAIYDKPREGEVYRIYLDIKKA-ESLGWKPEIDL 288
Query: 409 RKGLPKMV 416
++G+ ++V
Sbjct: 289 KEGIKRVV 296
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 156/325 (48%), Gaps = 33/325 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD--------SVIVVDNF-FTGRKENVMHHFGNPNFE 167
++I+VTGGAGF+GSH V LI+ GD V VVD + G N+ +P F
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKT---IKTNVVGTLNMLGLAK 219
+R D+ +E L+ D + H A + H + V + + +N+VGT +L A
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFA---AETHVDRSVVASGPFVASNLVGTQVLLDAAL 116
Query: 220 R--VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
R +G RFL ST EVYG W +P+ S Y K ++ L + YH+
Sbjct: 117 RHHIG-RFLHVSTDEVYGSI-----DTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTH 170
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
G++V + R N YGPR + +++ FV + L + VYGDG+ R + VSD GL
Sbjct: 171 GMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGL 228
Query: 338 MRLMEGEHVGP-FNLGNPGEFTMLELAQVVQETID-PNAKIEFRPNTEDDPHKRKPDISR 395
+ G +++G E T LEL +++ E P ++I F + + + D S+
Sbjct: 229 ALALGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSK 288
Query: 396 AKELLGWEPKVSLRKGLPKMVKDFR 420
LG+ P+V G+ + V +R
Sbjct: 289 IAGELGYRPRVDFTDGIAETVAWYR 313
|
Probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) (taxid: 134676) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 155/316 (49%), Gaps = 15/316 (4%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G V+ +D+ +GR EN+ + FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 ----LLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
LL E + I+HLA S +P NVVGT+ + A+ G R ++ ++
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 231 S--EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S VYG P +P E P+ S Y GK E Y ++ N
Sbjct: 121 SGGSVYGTPPAYPTSEDM-----PVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 289 TYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG 347
YGPR + VV+ F L ++GDG TR + FV D+V+ +R G
Sbjct: 176 VYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAGGPAGGG 235
Query: 348 P-FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV 406
FN+G E + EL + + + EF P D + + D +RA+E+LGW+P+V
Sbjct: 236 QRFNVGTGVETSTRELHTAIAGAVGAPDEPEFHPPRLGDLRRSRLDNTRAREVLGWQPQV 295
Query: 407 SLRKGLPKMVKDFRQR 422
+L +G+ K V+ FR +
Sbjct: 296 ALAEGIAKTVEFFRNK 311
|
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (taxid: 246196) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis (strain 168) GN=ytcB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 154/310 (49%), Gaps = 22/310 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNF-----FTGRKENVMHHFGNPNFELIR 170
++I+VTG AGF+GSHL + L+ + +VI +D+F F+ + +N+ + F I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 171 HDVV----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R 224
+++ LL VD I+HLA N + + L L A R +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQT 120
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F+ STS VYG+ + T ++P GV K T E L Y + G+ + I
Sbjct: 121 FVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVIL 174
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
R F YGPR D + Q L+++PLT++GDG+Q+R F ++SD V+G+ ++
Sbjct: 175 RFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 345 HV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGW 402
H+ N+G ++L++ ++++ A + F +P DIS+AK+LL +
Sbjct: 233 HLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHY 292
Query: 403 EPKVSLRKGL 412
+P SL+ GL
Sbjct: 293 DPATSLKDGL 302
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| 213950353 | 442 | UDP-glucuronic acid decarboxylase 2 [Gos | 0.972 | 0.972 | 0.881 | 0.0 | |
| 60932254 | 443 | UDP-glucuronic acid decarboxylase 2 [Pop | 0.981 | 0.979 | 0.837 | 0.0 | |
| 118481067 | 443 | unknown [Populus trichocarpa] | 0.981 | 0.979 | 0.837 | 0.0 | |
| 356535177 | 427 | PREDICTED: UDP-glucuronic acid decarboxy | 0.966 | 1.0 | 0.850 | 0.0 | |
| 224131118 | 442 | predicted protein [Populus trichocarpa] | 0.979 | 0.979 | 0.826 | 0.0 | |
| 15229334 | 445 | UDP-glucuronic acid decarboxylase [Arabi | 0.963 | 0.957 | 0.837 | 0.0 | |
| 224064446 | 429 | predicted protein [Populus trichocarpa] | 0.961 | 0.990 | 0.835 | 0.0 | |
| 225437374 | 444 | PREDICTED: UDP-glucuronic acid decarboxy | 0.963 | 0.959 | 0.840 | 0.0 | |
| 13605583 | 445 | AT3g62830/F26K9_260 [Arabidopsis thalian | 0.963 | 0.957 | 0.834 | 0.0 | |
| 297817618 | 445 | UDP-glucuronic acid decarboxylase 2 [Ara | 0.963 | 0.957 | 0.834 | 0.0 |
| >gi|213950353|gb|ACJ54441.1| UDP-glucuronic acid decarboxylase 2 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/431 (88%), Positives = 399/431 (92%), Gaps = 1/431 (0%)
Query: 1 MGSELIYRGHDSQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVI 60
MGSELIYRGH++QLA+DSYSPKP+KPW +VT+ +RYMLREQRL+FVLVGIAIATL F V
Sbjct: 1 MGSELIYRGHETQLASDSYSPKPVKPWASVTRVVRYMLREQRLLFVLVGIAIATLVFNVF 60
Query: 61 PTSYPASYGGARGHVAISDSLSYYPVETYQR-AYNPRVGFGAVNSGGKIPLGLKRKGLRI 119
P A + DS+ Y+P+ET + +Y R+GFG+ N GKIPLGLKRKGLRI
Sbjct: 61 PAPRAAHGPHLHSTTPLLDSIPYFPIETQNKFSYAHRLGFGSGNPTGKIPLGLKRKGLRI 120
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL 179
VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL
Sbjct: 121 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL 180
Query: 180 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 239
EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ
Sbjct: 181 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 240
Query: 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG 299
HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG
Sbjct: 241 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG 300
Query: 300 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTM 359
RVVSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGLMRLMEGEHVGPFNLGNPGEFTM
Sbjct: 301 RVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTM 360
Query: 360 LELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
LELA+VVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGW+PKVSLRKGLP MV DF
Sbjct: 361 LELAEVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWQPKVSLRKGLPLMVSDF 420
Query: 420 RQRIFGDHKEG 430
RQRIFGDHK G
Sbjct: 421 RQRIFGDHKVG 431
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|60932254|gb|AAX37335.1| UDP-glucuronic acid decarboxylase 2 [Populus tomentosa] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/443 (83%), Positives = 398/443 (89%), Gaps = 9/443 (2%)
Query: 3 SELIYRGHD-SQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIP 61
SELI+RGHD +Q A+D+YSPKP KPW AVT+PIRY+L EQRLVF+LVGIAIATLFFT++P
Sbjct: 4 SELIFRGHDETQPASDAYSPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIATLFFTLLP 63
Query: 62 TSYPASYGGARGHVAISDSLSYYPVETYQ----RAYNP-RVGFGAVNSGGKIPLGLKRKG 116
+S +S H I ++ S++ E + Y P RVGF + NSGGKIPLGLK K
Sbjct: 64 SSSSSS---PYEHDPIPNTFSHFSHELTAPMRYKYYEPLRVGFQSANSGGKIPLGLKSKS 120
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF NP FELIRHDVVEP
Sbjct: 121 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRHDVVEP 180
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236
LLLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD
Sbjct: 181 LLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 240
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
PLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI
Sbjct: 241 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 300
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 356
DDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE
Sbjct: 301 DDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 360
Query: 357 FTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
FTMLELAQVVQETIDPNA+IEFRPNTEDDPHKRKPDI++AK+LLGWEPK+SL +GLP MV
Sbjct: 361 FTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKISLHQGLPMMV 420
Query: 417 KDFRQRIFGDHKEGGAGATPDTT 439
DFRQR+FGDHKE G +T T+
Sbjct: 421 SDFRQRVFGDHKEEGTTSTMSTS 443
|
Source: Populus tomentosa Species: Populus tomentosa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118481067|gb|ABK92487.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/443 (83%), Positives = 397/443 (89%), Gaps = 9/443 (2%)
Query: 3 SELIYRGHD-SQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIP 61
SELI+RGHD +Q A+D+YSPKP KPW AVT+PIRY+L EQRLVF+LVGIAIATLFFTV+P
Sbjct: 4 SELIFRGHDETQPASDAYSPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIATLFFTVLP 63
Query: 62 TSYPASYGGARGHVAISDSLSYYPVETYQ----RAYNP-RVGFGAVNSGGKIPLGLKRKG 116
+S +S H I ++ S++ E + Y P RVG + NSGGKIPLGLK K
Sbjct: 64 SSSSSS---PYEHDPIPNTFSHFSHELTTPMRYKYYEPLRVGLQSANSGGKIPLGLKSKS 120
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH NP FELIRHDVVEP
Sbjct: 121 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHLKNPRFELIRHDVVEP 180
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236
LLLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD
Sbjct: 181 LLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 240
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
PLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI
Sbjct: 241 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 300
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 356
DDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE
Sbjct: 301 DDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 360
Query: 357 FTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
FTMLELAQVVQETIDPNA+IEFRPNTEDDPHKRKPDI++AK+LLGWEPK+SLR+GLP MV
Sbjct: 361 FTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKISLRQGLPMMV 420
Query: 417 KDFRQRIFGDHKEGGAGATPDTT 439
DFRQR+FGDHKE G +T T+
Sbjct: 421 SDFRQRVFGDHKEEGTTSTMSTS 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535177|ref|XP_003536125.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/434 (85%), Positives = 394/434 (90%), Gaps = 7/434 (1%)
Query: 1 MGSELIYRGHDSQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVI 60
MGSELI+RGH++Q DSYSPKP KPWF VT+PI YMLREQRLVFVLVG+ IATLFFT++
Sbjct: 1 MGSELIFRGHEAQPVDDSYSPKPHKPWFTVTRPIHYMLREQRLVFVLVGVIIATLFFTLV 60
Query: 61 PTSYPASYGGARGHVAISDSLSYYPVETYQRAYNPRVGFGAVNSGGKIPLGLKRKGLRIV 120
P+S +S S +SY+ E+ AY+ RV AV+S GK+PLG+KRKGLRIV
Sbjct: 61 PSSSSSSVPYE------SLPISYFERESKIPAYHHRVA-AAVHSVGKVPLGIKRKGLRIV 113
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLE 180
VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP FELIRHDVVEPLLLE
Sbjct: 114 VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLE 173
Query: 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQH 240
VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQH
Sbjct: 174 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQH 233
Query: 241 PQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR 300
PQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC+DDGR
Sbjct: 234 PQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGR 293
Query: 301 VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTML 360
VVSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGL+RLMEGEHVGPFNLGNPGEFTML
Sbjct: 294 VVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTML 353
Query: 361 ELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 420
ELA+VVQETIDP+A+IE+RPNTEDDPHKRKPDISRAK+ LGWEPKV LRKGLP MV DFR
Sbjct: 354 ELAKVVQETIDPDARIEYRPNTEDDPHKRKPDISRAKDQLGWEPKVDLRKGLPLMVSDFR 413
Query: 421 QRIFGDHKEGGAGA 434
QRIFGD KE + A
Sbjct: 414 QRIFGDQKEKASVA 427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131118|ref|XP_002321005.1| predicted protein [Populus trichocarpa] gi|118484863|gb|ABK94298.1| unknown [Populus trichocarpa] gi|222861778|gb|EEE99320.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/443 (82%), Positives = 392/443 (88%), Gaps = 10/443 (2%)
Query: 3 SELIYRGHD-SQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIP 61
SELI+RGHD +Q D+YSPKP KPW V +P+RY+LRE+RLVF LVG+AIAT+FFT++P
Sbjct: 4 SELIFRGHDETQPTPDAYSPKPAKPWLFVIRPVRYLLREKRLVFFLVGMAIATVFFTILP 63
Query: 62 TSYPASYGGARGHVAISDSLSYYPVE----TYQRAYNP-RVGFGAVNSGGKIPLGLKRKG 116
+S P A + + DS S+ E + Y P +VGF + NSGGKIPLGLKRKG
Sbjct: 64 SSSPH----AHKYDPLPDSFSHISHELTTPVRYKYYEPLQVGFQSANSGGKIPLGLKRKG 119
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF NP FELIRHDVVEP
Sbjct: 120 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRHDVVEP 179
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236
LLLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD
Sbjct: 180 LLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
PLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMCI
Sbjct: 240 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCI 299
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 356
DDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE
Sbjct: 300 DDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 359
Query: 357 FTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
FTMLELAQVVQETIDPNA+IEFRPNTEDDPHKRKPDI++AK+LLGWEPK+ LRKGLP MV
Sbjct: 360 FTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKIPLRKGLPMMV 419
Query: 417 KDFRQRIFGDHKEGGAGATPDTT 439
DFRQRIFGDH+E G T+
Sbjct: 420 SDFRQRIFGDHREEGTATNTSTS 442
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229334|ref|NP_191842.1| UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] gi|186511349|ref|NP_001118893.1| UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] gi|7362763|emb|CAB83133.1| dTDP-glucose 4-6-dehydratase homolog D18 [Arabidopsis thaliana] gi|23505953|gb|AAN28836.1| At3g62830/F26K9_260 [Arabidopsis thaliana] gi|332646877|gb|AEE80398.1| UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] gi|332646878|gb|AEE80399.1| UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/436 (83%), Positives = 386/436 (88%), Gaps = 10/436 (2%)
Query: 1 MGSELIYRGHDS-QLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTV 59
M SELI R H++ Q D+Y PKPIKPWF VT+P+RYMLREQRL+FVLVGIAIATL FT+
Sbjct: 1 MASELINRRHETDQPTADAYYPKPIKPWFTVTRPMRYMLREQRLIFVLVGIAIATLVFTI 60
Query: 60 IPTSYPAS-YGGARGHVAISDSLSYYPVETYQRA----YNPRVGFGAVNSGGKIPLGLKR 114
P S ++ Y I SY P QR Y R+G +GGKIPLGLKR
Sbjct: 61 FPRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIG----ATGGKIPLGLKR 116
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
KGLR+VVTGGAGFVGSHLVDRL+ARGD+VIVVDNFFTGRKENVMHHF NPNFE+IRHDVV
Sbjct: 117 KGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFEMIRHDVV 176
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
EP+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY
Sbjct: 177 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 236
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
GDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRM
Sbjct: 237 GDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRM 296
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354
CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP
Sbjct: 297 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 356
Query: 355 GEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414
GEFTMLELA+VVQETIDPNA IEFRPNTEDDPHKRKPDI++AKELLGWEPKVSLR+GLP
Sbjct: 357 GEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPL 416
Query: 415 MVKDFRQRIFGDHKEG 430
MVKDFRQR+FGD KEG
Sbjct: 417 MVKDFRQRVFGDQKEG 432
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064446|ref|XP_002301480.1| predicted protein [Populus trichocarpa] gi|222843206|gb|EEE80753.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/438 (83%), Positives = 392/438 (89%), Gaps = 13/438 (2%)
Query: 3 SELIYRGHD-SQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIP 61
SELI+RGHD +Q A+D+YSPKP KPW AVT+PIRY+L EQRLVF+LVGIAIATLFFT++P
Sbjct: 4 SELIFRGHDETQPASDAYSPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIATLFFTLLP 63
Query: 62 TSYPASYGGARGHVAISDSLSYYPVETYQRAYNPRVGFGAVNSGGKIPLGLKRKGLRIVV 121
+S +S H I ++ S++ E + NSGGKIPLGLK K LRIVV
Sbjct: 64 SSSSSS---PYEHDPIPNTFSHFSHE---------LTTPMPNSGGKIPLGLKSKSLRIVV 111
Query: 122 TGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEV 181
TGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF NP FELIRHDVVEPLLLEV
Sbjct: 112 TGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRHDVVEPLLLEV 171
Query: 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP 241
DQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP
Sbjct: 172 DQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP 231
Query: 242 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRV 301
Q ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRV
Sbjct: 232 QVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRV 291
Query: 302 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLE 361
VSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLE
Sbjct: 292 VSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLE 351
Query: 362 LAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
LAQVVQETIDPNA+IEFRPNTEDDPHKRKPDI++AK+LLGWEPK+SLR+GLP MV DFRQ
Sbjct: 352 LAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKISLRQGLPMMVSDFRQ 411
Query: 422 RIFGDHKEGGAGATPDTT 439
R+FGDHKE G +T T+
Sbjct: 412 RVFGDHKEEGTTSTMSTS 429
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437374|ref|XP_002268787.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/440 (84%), Positives = 391/440 (88%), Gaps = 14/440 (3%)
Query: 1 MGSELIYRGHDSQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVI 60
MGSELI+RGH++Q D YSPKP KPW +V +PIRYMLREQRL+F LVGIAIAT+ F ++
Sbjct: 1 MGSELIFRGHETQPMADGYSPKPPKPWLSVVRPIRYMLREQRLLFTLVGIAIATVVFLLL 60
Query: 61 PTSYPASYGGARGHVAISDSLSYYPVETYQRAYNPRVGFGAVNSGG--------KIPLGL 112
P+S PA Y ISDS Y+P ET + + RV + GG K+PLGL
Sbjct: 61 PSS-PAPY--THRFDPISDS--YFPSETTTQLAH-RVAYAGHGGGGFGFVNSGGKVPLGL 114
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD 172
KRKGLRIVVTGGAGFVGSHLVDRLI RGDSVIVVDNFFTGRKENVMHHFGNP FELIRHD
Sbjct: 115 KRKGLRIVVTGGAGFVGSHLVDRLIRRGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHD 174
Query: 173 VVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232
VVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE
Sbjct: 175 VVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
VYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGP
Sbjct: 235 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAEVEVRIARIFNTYGP 294
Query: 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 352
RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGL+RLMEGEHVGPFNLG
Sbjct: 295 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLG 354
Query: 353 NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 412
NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDIS+AK+LLGWEPKV+LRKGL
Sbjct: 355 NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKDLLGWEPKVALRKGL 414
Query: 413 PKMVKDFRQRIFGDHKEGGA 432
P MV DFR+RIFGDHKE GA
Sbjct: 415 PLMVSDFRERIFGDHKEDGA 434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13605583|gb|AAK32785.1|AF361617_1 AT3g62830/F26K9_260 [Arabidopsis thaliana] gi|14595664|gb|AAK70881.1|AF387788_1 UDP-glucuronic acid decarboxylase [Arabidopsis thaliana] gi|928932|emb|CAA89205.1| homolog of dTDP-glucose 4-6-dehydratases [Arabidopsis thaliana] gi|1585435|prf||2124427B diamide resistance gene | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/436 (83%), Positives = 386/436 (88%), Gaps = 10/436 (2%)
Query: 1 MGSELIYRGHDS-QLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTV 59
M SELI R H++ Q D+Y PKPIKPWF VT+P+RYMLREQRL+FVLVGIAIATL FT+
Sbjct: 1 MASELINRRHETDQPTADAYYPKPIKPWFTVTRPMRYMLREQRLIFVLVGIAIATLVFTI 60
Query: 60 IPTSYPAS-YGGARGHVAISDSLSYYPVETYQRA----YNPRVGFGAVNSGGKIPLGLKR 114
P S ++ Y I SY P QR Y R+G +GGKIPLGLKR
Sbjct: 61 FPRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIG----ATGGKIPLGLKR 116
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
KGLR+VVTGGAGFVGSHLVDRL+ARGD+VIVVDNFFTGRKENVMHHF NPNFE+IRHDVV
Sbjct: 117 KGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFEMIRHDVV 176
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
EP+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY
Sbjct: 177 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 236
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
GDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG+ VEVRIARIFNTYGPRM
Sbjct: 237 GDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGSNVEVRIARIFNTYGPRM 296
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354
CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP
Sbjct: 297 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 356
Query: 355 GEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414
GEFTMLELA+VVQETIDPNA IEFRPNTEDDPHKRKPDI++AKELLGWEPKVSLR+GLP
Sbjct: 357 GEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPL 416
Query: 415 MVKDFRQRIFGDHKEG 430
MVKDFRQR+FGD KEG
Sbjct: 417 MVKDFRQRVFGDQKEG 432
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817618|ref|XP_002876692.1| UDP-glucuronic acid decarboxylase 2 [Arabidopsis lyrata subsp. lyrata] gi|297322530|gb|EFH52951.1| UDP-glucuronic acid decarboxylase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/436 (83%), Positives = 385/436 (88%), Gaps = 10/436 (2%)
Query: 1 MGSELIYRGHDS-QLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTV 59
M +ELI R H++ Q D+Y PKPIKPWF VT+P+RYMLREQRL+FVLVGIAIATL FT+
Sbjct: 1 MANELINRRHEADQPIADAYYPKPIKPWFMVTRPMRYMLREQRLIFVLVGIAIATLVFTI 60
Query: 60 IPTSYPAS-YGGARGHVAISDSLSYYPVETYQRA----YNPRVGFGAVNSGGKIPLGLKR 114
P S +S Y I SY P QR Y R+G +GGKIPLGLKR
Sbjct: 61 FPRSTQSSAYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIG----ATGGKIPLGLKR 116
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
KGLR+VVTGGAGFVGSHLVDRL+ARGD+VIVVDNFFTGRKENVMHHF NPNFELIRHDVV
Sbjct: 117 KGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFELIRHDVV 176
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
EP+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY
Sbjct: 177 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 236
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
GDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRM
Sbjct: 237 GDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRM 296
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354
CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP
Sbjct: 297 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 356
Query: 355 GEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414
GEFTMLELA+VVQETID NA IEFRPNTEDDPHKRKPDI++AKELLGWEPKVSLR+GLP
Sbjct: 357 GEFTMLELAKVVQETIDHNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPL 416
Query: 415 MVKDFRQRIFGDHKEG 430
MVKDFRQR+FGD +EG
Sbjct: 417 MVKDFRQRVFGDQREG 432
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 442 | ||||||
| TAIR|locus:2081675 | 445 | AUD1 "AT3G62830" [Arabidopsis | 0.990 | 0.984 | 0.826 | 1.5e-195 | |
| TAIR|locus:2053275 | 343 | UXS6 "UDP-XYL synthase 6" [Ara | 0.701 | 0.903 | 0.729 | 2.7e-123 | |
| TAIR|locus:2078206 | 341 | UXS5 "UDP-XYL synthase 5" [Ara | 0.710 | 0.920 | 0.718 | 2.7e-123 | |
| TAIR|locus:2168539 | 357 | UXS3 "UDP-glucuronic acid deca | 0.694 | 0.859 | 0.724 | 6.5e-122 | |
| UNIPROTKB|E1BV28 | 421 | UXS1 "Uncharacterized protein" | 0.692 | 0.726 | 0.653 | 1.3e-107 | |
| UNIPROTKB|E1BMI4 | 420 | UXS1 "Uncharacterized protein" | 0.692 | 0.728 | 0.653 | 1.3e-107 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.692 | 0.842 | 0.650 | 1.3e-107 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.692 | 0.728 | 0.650 | 1.3e-107 | |
| MGI|MGI:1915133 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.692 | 0.728 | 0.650 | 1.3e-107 | |
| RGD|628680 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.692 | 0.728 | 0.650 | 1.3e-107 |
| TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1894 (671.8 bits), Expect = 1.5e-195, P = 1.5e-195
Identities = 371/449 (82%), Positives = 393/449 (87%)
Query: 1 MGSELIYRGHDSQLAT-DSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTV 59
M SELI R H++ T D+Y PKPIKPWF VT+P+RYMLREQRL+FVLVGIAIATL FT+
Sbjct: 1 MASELINRRHETDQPTADAYYPKPIKPWFTVTRPMRYMLREQRLIFVLVGIAIATLVFTI 60
Query: 60 IPTSYPAS-YGGARGHVAISDSLSYYPVETYQRA----YNPRVGFGAVNSGGKIPLGLKR 114
P S ++ Y I SY P QR Y R+G +GGKIPLGLKR
Sbjct: 61 FPRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIGA----TGGKIPLGLKR 116
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
KGLR+VVTGGAGFVGSHLVDRL+ARGD+VIVVDNFFTGRKENVMHHF NPNFE+IRHDVV
Sbjct: 117 KGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFEMIRHDVV 176
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
EP+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY
Sbjct: 177 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 236
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
GDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRM
Sbjct: 237 GDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRM 296
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354
CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP
Sbjct: 297 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 356
Query: 355 GEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414
GEFTMLELA+VVQETIDPNA IEFRPNTEDDPHKRKPDI++AKELLGWEPKVSLR+GLP
Sbjct: 357 GEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPL 416
Query: 415 MVKDFRQRIFGDHKEGG-AGATPDTTSSA 442
MVKDFRQR+FGD KEG A AT T+SA
Sbjct: 417 MVKDFRQRVFGDQKEGSSAAATTTKTTSA 445
|
|
| TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 227/311 (72%), Positives = 262/311 (84%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHD 172
+ +RI+VTGGAGF+GSHLVD+L+ + VIV DN+FTG K+N+ G+P FELIRHD
Sbjct: 28 QSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 87
Query: 173 VVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232
V EPL +EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 88 VTEPLFVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 147
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
VYGDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR G+E+RIARIFNTYGP
Sbjct: 148 VYGDPLVHPQTESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 207
Query: 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 352
RM IDDGRVVSNF+AQALR E LTV G QTRSF +VSD+VEGLMRLMEG+ GP N+G
Sbjct: 208 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVEGLMRLMEGDQTGPINIG 267
Query: 353 NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 412
NPGEFTM+ELA+ V+E I P+ +I+ NT DDP +RKPDIS+AKE+LGWEPKV LR+GL
Sbjct: 268 NPGEFTMVELAETVKELIKPDVEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGL 327
Query: 413 PKMVKDFRQRI 423
P M +DFR R+
Sbjct: 328 PLMEEDFRLRL 338
|
|
| TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 227/316 (71%), Positives = 267/316 (84%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHD 172
+ +RI+++GGAGF+GSHLVD+L+ + VIV DN+FTG K+N+ G+P FELIRHD
Sbjct: 26 QSNMRILISGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 85
Query: 173 VVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232
V EPLL+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 86 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 145
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
VYGDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR G+E+RIARIFNTYGP
Sbjct: 146 VYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 205
Query: 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 352
RM IDDGRVVSNF+AQALR E LTV G QTRSF +VSD+V+GLMRLMEG+ GP N+G
Sbjct: 206 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINIG 265
Query: 353 NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 412
NPGEFTM+ELA+ V+E I+P+ +I+ NT DDP +RKPDI++AKE+LGWEPKV LR+GL
Sbjct: 266 NPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREGL 325
Query: 413 PKMVKDFRQRIFGDHK 428
P M +DFR R+ G HK
Sbjct: 326 PLMEEDFRLRL-GVHK 340
|
|
| TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1199 (427.1 bits), Expect = 6.5e-122, P = 6.5e-122
Identities = 223/308 (72%), Positives = 262/308 (85%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
+RI+++GGAGF+GSHLVD+L+ + V+V DN+FTG KEN+ G+P FELIRHDV E
Sbjct: 45 MRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSKENLKKWIGHPRFELIRHDVTE 104
Query: 176 PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235
PLL+EVD+IYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 105 PLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 164
Query: 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
DPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR G+E+RIARIFNTYGPRM
Sbjct: 165 DPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 224
Query: 296 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPG 355
IDDGRVVSNF+AQALR E LTV G QTRSF +VSD+V+GL+RLMEG GP N+GNPG
Sbjct: 225 IDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINIGNPG 284
Query: 356 EFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415
EFTM+ELA+ V+E I+P+ +I+ NT DDP +RKPDIS+AKE+LGWEPKV LR+GLP M
Sbjct: 285 EFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGLPLM 344
Query: 416 VKDFRQRI 423
+DFR R+
Sbjct: 345 EEDFRLRL 352
|
|
| UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 200/306 (65%), Positives = 239/306 (78%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 211 EVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 270
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 271 DGRVVSNFILQALQGEPLTVYGPGTQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 330
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ++++ + ++I+F +DDP KRKPDI +AK LLGWEP V L +GL K +
Sbjct: 331 TILEFAQLIKKLVGSGSEIQFLSEAQDDPQKRKPDIRKAKLLLGWEPVVPLEEGLNKAIH 390
Query: 418 DFRQRI 423
FR+ +
Sbjct: 391 YFRKEL 396
|
|
| UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 200/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI+VTGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILVTGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 33 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 92
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 93 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 152
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 153 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 212
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 213 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 272
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 273 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 332
Query: 418 DFRQRI 423
FR+ +
Sbjct: 333 YFRKEL 338
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
|
| MGI|MGI:1915133 Uxs1 "UDP-glucuronate decarboxylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
|
| RGD|628680 Uxs1 "UDP-glucuronate decarboxylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 418 DFRQRI 423
FR+ +
Sbjct: 390 YFRKEL 395
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q91XL3 | UXS1_MOUSE | 4, ., 1, ., 1, ., 3, 5 | 0.6503 | 0.6923 | 0.7285 | yes | no |
| Q5R885 | UXS1_PONAB | 4, ., 1, ., 1, ., 3, 5 | 0.6503 | 0.6923 | 0.7285 | yes | no |
| Q8NBZ7 | UXS1_HUMAN | 4, ., 1, ., 1, ., 3, 5 | 0.6503 | 0.6923 | 0.7285 | yes | no |
| Q6GMI9 | UXS1_DANRE | 4, ., 1, ., 1, ., 3, 5 | 0.6405 | 0.6923 | 0.7320 | yes | no |
| Q5PQX0 | UXS1_RAT | 4, ., 1, ., 1, ., 3, 5 | 0.6503 | 0.6923 | 0.7285 | yes | no |
| Q6DF08 | UXS1_XENTR | 4, ., 1, ., 1, ., 3, 5 | 0.6339 | 0.6923 | 0.7268 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 0.0 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 0.0 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 0.0 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-80 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 4e-74 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 3e-61 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 8e-57 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 4e-55 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 3e-52 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 7e-51 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 1e-47 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-46 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 3e-42 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-41 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 7e-40 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 7e-39 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 3e-37 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 1e-36 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 8e-35 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 2e-34 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 5e-33 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 1e-31 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 7e-30 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 1e-26 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 1e-25 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 2e-25 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 6e-25 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 5e-24 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 5e-22 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 1e-21 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 3e-21 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 3e-21 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 2e-20 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 1e-17 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 2e-17 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-17 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 1e-16 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 2e-16 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-16 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 5e-16 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 3e-15 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 2e-14 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-14 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 1e-13 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 1e-13 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 2e-13 | |
| PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic ac | 3e-13 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 5e-13 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 6e-13 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 1e-12 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-12 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 5e-12 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 2e-11 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 3e-11 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 5e-11 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 6e-10 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 8e-10 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 1e-09 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 6e-09 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 1e-08 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 3e-08 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 5e-08 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 6e-08 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 1e-07 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 4e-07 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 5e-07 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 7e-07 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 1e-06 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 2e-06 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 3e-06 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 8e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 1e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 5e-05 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 6e-05 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 8e-05 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 2e-04 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 6e-04 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 6e-04 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 7e-04 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 7e-04 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 8e-04 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 0.001 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 0.001 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 836 bits (2160), Expect = 0.0
Identities = 372/443 (83%), Positives = 390/443 (88%), Gaps = 5/443 (1%)
Query: 1 MGSELIYRGHD-SQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTV 59
M SELI R H+ +Q D+Y PKPIKPWF VT+PIRYMLREQRLVFVLVGIAIATL FT+
Sbjct: 1 MASELINRRHEETQPTADAYYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTI 60
Query: 60 IPTS---YPASYGGARGHVAISDSLSYYPVETYQRAYNPRVGFGAVNSGGKIPLGLKRKG 116
P+S P S G+ D SY P QR + NSGGKIPLGLKRKG
Sbjct: 61 FPSSSQPSPYSVDPLSGYGIRPDE-SYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKG 119
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LR+VVTGGAGFVGSHLVDRL+ARGDSVIVVDNFFTGRKENVMHHF NPNFELIRHDVVEP
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEP 179
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236
+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD
Sbjct: 180 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
PLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA VEVRIARIFNTYGPRMCI
Sbjct: 240 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCI 299
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 356
DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE
Sbjct: 300 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 359
Query: 357 FTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
FTMLELA+VVQETIDPNAKIEFRPNTEDDPHKRKPDI++AKELLGWEPKVSLR+GLP MV
Sbjct: 360 FTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMV 419
Query: 417 KDFRQRIFGDHKEGGAGATPDTT 439
KDFRQR+FGD KEG + T+
Sbjct: 420 KDFRQRVFGDQKEGSSTTATSTS 442
|
Length = 442 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 670 bits (1731), Expect = 0.0
Identities = 303/416 (72%), Positives = 349/416 (83%), Gaps = 4/416 (0%)
Query: 16 TDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIPTSYPASYGGARGHV 75
+ YSPK +K ++ + I Y+ +EQRL+F+LVGI I + FF + P+ + G A
Sbjct: 23 SSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSL--SRLGPAESTS 80
Query: 76 AISDSLSYYPVETYQRAYNPRVGFGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDR 135
I+ S+S ++ + G +G ++P+G+ RK LRIVVTGGAGFVGSHLVD+
Sbjct: 81 LITRSVSIAVTDSPPSSSTFNSSGGGGRTG-RVPVGIGRKRLRIVVTGGAGFVGSHLVDK 139
Query: 136 LIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVH 195
LI RGD VIV+DNFFTGRKEN++H FGNP FELIRHDVVEP+LLEVDQIYHLACPASPVH
Sbjct: 140 LIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 199
Query: 196 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255
YK+NPVKTIKTNV+GTLNMLGLAKRVGARFLLTSTSEVYGDPL+HPQKETYWGNVNPIG
Sbjct: 200 YKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 259
Query: 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL 315
RSCYDEGKRTAETL MDYHRGAGVEVRIARIFNTYGPRMC+DDGRVVSNFVAQ +RK+P+
Sbjct: 260 RSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPM 319
Query: 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK 375
TVYGDGKQTRSFQ+VSDLV+GL+ LMEGEHVGPFNLGNPGEFTMLELA+VV+ETID +A
Sbjct: 320 TVYGDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDSSAT 379
Query: 376 IEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIF-GDHKEG 430
IEF+PNT DDPHKRKPDIS+AKELL WEPK+SLR+GLP MV DFR RI D +G
Sbjct: 380 IEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNEDEGKG 435
|
Length = 436 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 584 bits (1509), Expect = 0.0
Identities = 220/304 (72%), Positives = 254/304 (83%), Gaps = 1/304 (0%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGF+GSHL DRL+ G VI VDNFFTGRK N+ H G+PNFE IRHDV EPL
Sbjct: 2 RILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTEPL 61
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
LEVDQIYHLACPASPVHY++NP+KT+KTNV+GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 62 YLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYGDP 121
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E+YWGNVNPIG RSCYDEGKR AETL M YHR GV+VRIARIFNTYGPRM +
Sbjct: 122 EVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARIFNTYGPRMHPN 181
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPFNLGNPGE 356
DGRVVSNF+ QALR EP+TVYGDG QTRSFQ+VSDLVEGL+RLM ++ GP NLGNP E
Sbjct: 182 DGRVVSNFIVQALRGEPITVYGDGTQTRSFQYVSDLVEGLIRLMNSDYFGGPVNLGNPEE 241
Query: 357 FTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
FT+LELA++V++ ++I F P EDDP +R+PDIS+AKELLGWEPKV L +GL + +
Sbjct: 242 FTILELAELVKKLTGSKSEIVFLPLPEDDPKRRRPDISKAKELLGWEPKVPLEEGLRRTI 301
Query: 417 KDFR 420
+ FR
Sbjct: 302 EYFR 305
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 3e-80
Identities = 122/312 (39%), Positives = 174/312 (55%), Gaps = 18/312 (5%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTGGAGF+GSHLV+RL+ RG VIV+DN TG+KEN+ PN + I D+
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEV--KPNVKFIEGDIRDDE 58
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
VE VD ++H A AS +P+K + NV+GTLN+L A++ G RF+ S+S
Sbjct: 59 LVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSS 118
Query: 232 EVYGDPLQHPQKETYWGN-VNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYGDP P+ E + N ++P V K E + R G+ R FN Y
Sbjct: 119 SVYGDPPYLPKDEDHPPNPLSPYAV------SKYAGELYCQVFARLYGLPTVSLRYFNVY 172
Query: 291 GPRMCIDDGR--VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348
GPR + G V+ F+ +AL+ EP T+YGDG+QTR F +V D+VE + G
Sbjct: 173 GPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLAATAGAGGE 232
Query: 349 -FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVS 407
+N+G ++ ELA++++E + + + P D DIS+AK+LLGWEPKVS
Sbjct: 233 VYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDVRHSLADISKAKKLLGWEPKVS 292
Query: 408 LRKGLPKMVKDF 419
+GL V+ F
Sbjct: 293 FEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 4e-74
Identities = 118/315 (37%), Positives = 160/315 (50%), Gaps = 15/315 (4%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI+VTGGAGF+GSHLV+RL+A G V +D G + +L D+V+ L
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDEL 60
Query: 178 LLEV-DQIYHLACPASPVHYK-FNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTST-SEV 233
V D + HLA +S +P + + NV GTLN+L A+ G RF+ S+ S V
Sbjct: 61 AKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVV 120
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGDP P E G P + Y K AE L Y R G+ V I R FN YGP
Sbjct: 121 YGDPPPLPIDEDL-GPPRP---LNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPG 176
Query: 294 MCID-DGRVVSNFVAQALRKEPL-TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNL 351
D VVS F+ Q L+ EP+ + GDG QTR F +V D+ + L+ +E G FN+
Sbjct: 177 DKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGGVFNI 236
Query: 352 GNPG-EFTMLELAQVVQETI---DPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVS 407
G+ E T+ ELA+ V E + P D + DIS+A+ LGWEPKVS
Sbjct: 237 GSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVS 296
Query: 408 LRKGLPKMVKDFRQR 422
L +GL ++ ++
Sbjct: 297 LEEGLADTLEWLLKK 311
|
Length = 314 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 3e-61
Identities = 104/321 (32%), Positives = 156/321 (48%), Gaps = 25/321 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
++VTG GF+GSHL +RL+ G V +D + + ++ + + F I DV +
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDAS 60
Query: 178 LLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTS 231
+E D ++HLA + + P+ ++TNV GTLN+L A + R + TSTS
Sbjct: 61 EVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTSTS 120
Query: 232 EVYGDPLQHPQKETYWGNVNPIGV----RSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
EVYG P E +P+ RS Y K+ A+ L Y R G+ V I R F
Sbjct: 121 EVYGTAQDVPIDED-----HPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRPF 175
Query: 288 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV- 346
NTYGPR V+ ++Q + L GDG TR F FV D G + +++
Sbjct: 176 NTYGPRQ--SARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDILDAIEAV 233
Query: 347 -GPFNLGNPGEFTMLELA-QVVQETIDPNAKIEFRPNTEDDP-----HKRKPDISRAKEL 399
N G+ E ++ A +++ E + I + + E P +R PDI +AK L
Sbjct: 234 GEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHREYRPGYSEVERRIPDIRKAKRL 293
Query: 400 LGWEPKVSLRKGLPKMVKDFR 420
LGWEPK SLR GL + ++ F+
Sbjct: 294 LGWEPKYSLRDGLRETIEWFK 314
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 8e-57
Identities = 109/316 (34%), Positives = 167/316 (52%), Gaps = 28/316 (8%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI+VTGGAGF+GSHLVDRL+ G+ V+VVDN +GR+EN+ F N F ++ D+++
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60
Query: 178 ----LLEVDQIYHLACPASP-VHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+ D ++HLA A+P V +P ++ NV+ T N+L + G R + S+
Sbjct: 61 DKVAKKDGDTVFHLA--ANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASS 118
Query: 231 SEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
S VYG+ P E Y PI S Y K AE L Y G + I R N
Sbjct: 119 STVYGEAKVIPTPEDY--PPLPI---SVYGASKLAAEALISAYAHLFGFQAWIFRFANIV 173
Query: 291 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVEGLMRLME--GEHV 346
GPR V+ +F+ + L++ P L V GDG+Q +S+ +VSD V+ ++ E E V
Sbjct: 174 GPRS---THGVIYDFINK-LKRNPNELEVLGDGRQRKSYLYVSDCVDAMLLAWEKSTEGV 229
Query: 347 GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----DDPHKRKPDISRAKELLGW 402
FNLGN ++ E+A++V E + + ++ D P+ R DI + K LGW
Sbjct: 230 NIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMRL-DIEKLK-ALGW 287
Query: 403 EPKVSLRKGLPKMVKD 418
+P+ + + + K V++
Sbjct: 288 KPRYNSEEAVRKTVRE 303
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 4e-55
Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 40/237 (16%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTGGAGF+GSHLV RL+ RG V+V+D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 179 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYGDP 237
D + HLA NP + +TNVVGTLN+L A++ G RF+ S++ VYG P
Sbjct: 32 ---DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGSP 88
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
P++E P+ S Y K AE L Y G+ V I R+ N YGP
Sbjct: 89 EGLPEEEETP--PRPL---SPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRPR 143
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV--GPFNLG 352
VV++F+ +AL +PLTV+G G QTR F V D+V ++ +E G +N+G
Sbjct: 144 LDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALENPLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 3e-52
Identities = 102/323 (31%), Positives = 139/323 (43%), Gaps = 23/323 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
R +VTG GF+GSHL +RL A G V D +L +
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 177 LLLEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVY 234
VD ++HLA + Y + N + N + NML A+ G RFL S++ VY
Sbjct: 61 ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120
Query: 235 GDPLQHPQKETYWG----NVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
P + T + P + Y K E L Y+ G+E RI R N Y
Sbjct: 121 --PEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRFHNIY 178
Query: 291 GPRMCIDDGRVVSNFVAQAL-RK-------EPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
GPR D GR A+ RK + ++GDG QTRSF ++ D VEGL RLME
Sbjct: 179 GPRGTWDGGR---EKAPAAMCRKVATAKDGDRFEIWGDGLQTRSFTYIDDCVEGLRRLME 235
Query: 343 GEHVGPFNLGNPGEFTMLELAQVVQETID--PNAKIEFRPNTEDDPHKRKPDISRAKELL 400
+ P NLG+ +M ELA++V + P I P + R D + KE L
Sbjct: 236 SDFGEPVNLGSDEMVSMNELAEMV-LSFSGKPLEIIHHTPGPQGVRG-RNSDNTLLKEEL 293
Query: 401 GWEPKVSLRKGLPKMVKDFRQRI 423
GWEP L +GL +++I
Sbjct: 294 GWEPNTPLEEGLRITYFWIKEQI 316
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 7e-51
Identities = 105/323 (32%), Positives = 164/323 (50%), Gaps = 29/323 (8%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
+I+VTGGAGF+GS+ V L+ + +I +D + G EN+ +P + ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDIC 61
Query: 175 EPLLL-------EVDQIYHLACPA-SPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVGA-R 224
+ L+ ++D + H A A S V + P I+TNV+GT +L A++ G R
Sbjct: 62 DAELVDRLFEEEKIDAVIHFA--AESHVDRSISDPEPFIRTNVLGTYTLLEAARKYGVKR 119
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F+ ST EVYGD L + T + P S Y K A+ L YHR G+ V I
Sbjct: 120 FVHISTDEVYGD-LLDDGEFTETSPLAP---TSPYSASKAAADLLVRAYHRTYGLPVVIT 175
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
R N YGP + +++ F+ AL +PL +YGDG R + +V D + ++E
Sbjct: 176 RCSNNYGPYQFPE--KLIPLFILNALDGKPLPIYGDGLNVRDWLYVEDHARAIELVLEKG 233
Query: 345 HVGP-FNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDP-HKRK--PDISRAKEL 399
VG +N+G E T LEL +++ E + + I + +D P H R+ D S+ +
Sbjct: 234 RVGEIYNIGGGNELTNLELVKLILELLGKDESLITY---VKDRPGHDRRYAIDSSKIRRE 290
Query: 400 LGWEPKVSLRKGLPKMVKDFRQR 422
LGW PKVS +GL K V+ + +
Sbjct: 291 LGWRPKVSFEEGLRKTVRWYLEN 313
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-47
Identities = 83/245 (33%), Positives = 113/245 (46%), Gaps = 23/245 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTGG GF+GSHLV RL+ G VI R+ D+ +P
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVI---VLGRRRRSES---LNTGRIRFHEGDLTDPDA 54
Query: 179 LE-------VDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 229
LE D + HLA S V F P I+ NV+GTL +L A+R G RF+ S
Sbjct: 55 LERLLAEVQPDAVIHLAA-QSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFAS 113
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
+SEVYGD P E P+G S Y K AE L Y R G+ I R+FN
Sbjct: 114 SSEVYGDVADPPITEDT-----PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 290 YGPR-MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVG 347
YGP V+ + + L +P+ + GDG Q R F +V D+ ++ +E +
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLALEHPDGGE 228
Query: 348 PFNLG 352
+N+G
Sbjct: 229 IYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-46
Identities = 98/310 (31%), Positives = 145/310 (46%), Gaps = 26/310 (8%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF------TGRKENVMHHFGNPNFELIRH 171
R+++ GG GF+GSHLVD L+ G V V D G + + + N
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGGVDYIKGDYENR------A 54
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL--AKRVGARFLLTS 229
D+ L+ +D + HLA +P NP+ I+TNV T+ +L A +G +S
Sbjct: 55 DLES-ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
VYG P Q P E+ PI S Y K E Y G++ + RI N
Sbjct: 114 GGTVYGVPEQLPISESD--PTLPI---SSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 290 YGPRMCIDDGR-VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348
YGP D + V+ + + LR EP+ ++GDG+ R + ++ DLVE LM L+ + G
Sbjct: 169 YGPGQRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEALMALLRSK--GL 226
Query: 349 FNLGNPGEFTMLELAQVVQ--ETIDPNA-KIEFRPNTEDDPHKRKPDISRAKELLGWEPK 405
+ N G LA+++ E + + ++ + P D K DISRA+ LGW PK
Sbjct: 227 EEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPKIVLDISRARAELGWSPK 286
Query: 406 VSLRKGLPKM 415
+SL GL K
Sbjct: 287 ISLEDGLEKT 296
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 3e-42
Identities = 87/328 (26%), Positives = 137/328 (41%), Gaps = 36/328 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD----NFFTGRKENVMHHFGNPNFELIRHDV 173
R ++TG G GS+L + L+ +G V + +F T R +++ + L D+
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYIN--KDRITLHYGDL 58
Query: 174 VEPL-LLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGAR 224
+ L D+IYHLA + +P T + N VGTLN+L + + AR
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
F S+SE YG + PQ ET P RS Y K A+ +T +Y G+
Sbjct: 119 FYQASSSEEYGKVQELPQSET-----TPFRPRSPYAVSKLYADWITRNYREAYGLFAVNG 173
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
R+FN GPR + V Q R +P+ G+ R + D VE L
Sbjct: 174 RLFNHEGPRR--GETFVTRKITRQVARIKAGLQPVLKLGNLDAKRDWGDARDYVEAYWLL 231
Query: 341 MEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIE-------FRPNTEDDPHKRKPDI 393
++ + + ++ E ++ E IE FRP D D
Sbjct: 232 LQQGEPDDYVIATGETHSVREFVELAFEESGLTGDIEVEIDPRYFRPTEVD---LLLGDP 288
Query: 394 SRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
S+A+E LGW+P+VS + + +M+ +
Sbjct: 289 SKAREELGWKPEVSFEELVREMLDADLE 316
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 1e-41
Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 50/342 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF----TGRKENVMHHFGNPN-FELIRHD 172
+I+VTG AGF+G H+ RL+ RGD V+ +DN KE + G F+ ++ D
Sbjct: 2 KILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKGD 61
Query: 173 VVEPLLL-------EVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGAR 224
+ + L E D + HLA A V Y NP + +N+VG LN+L L + G +
Sbjct: 62 LEDREALRRLFKDHEFDAVIHLAAQAG-VRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 225 -FLLTSTSEVYGDPLQHPQKETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
+ S+S VYG + P E V+ PI S Y K+ E + Y G+
Sbjct: 121 HLVYASSSSVYGLNTKMPFSED--DRVDHPI---SLYAATKKANELMAHTYSHLYGIPTT 175
Query: 283 IARIFNTYG----PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
R F YG P M + F L +P+ V+ DG +R F ++ D+VEG++
Sbjct: 176 GLRFFTVYGPWGRPDMAL------FLFTKAILEGKPIDVFNDGNMSRDFTYIDDIVEGVV 229
Query: 339 RLM----------EGEHVGP---------FNLGNPGEFTMLELAQVVQETIDPNAKIEFR 379
R + + E P +N+GN +++ + +++ + AK +
Sbjct: 230 RALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYL 289
Query: 380 PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
P + D + DIS+ + LLG++PK SL +G+ + V+ +++
Sbjct: 290 PMQKGDVPETYADISKLQRLLGYKPKTSLEEGVKRFVEWYKE 331
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 7e-40
Identities = 96/314 (30%), Positives = 148/314 (47%), Gaps = 42/314 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG---------NPNFELI 169
++VTG GF+GSHLV+ L+ +G V + N + +G E++
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLY------NSFNSWGWLDTSPPEVKDKIEVV 54
Query: 170 RHDVVEPLLLE-----VDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG- 222
D+ +P + D ++HLA A P Y P + TNV GTLN+L A+ +G
Sbjct: 55 TGDIRDPDSVRKAMKGCDVVFHLAALIAIPYSYI-APDSYVDTNVTGTLNVLQAARDLGV 113
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
+ + TSTSEVYG P E + P+ +S Y K A+ L + ++R V
Sbjct: 114 EKVVHTSTSEVYGTAQYVPIDEKH-----PLQGQSPYSASKIGADQLALSFYRSFNTPVT 168
Query: 283 IARIFNTYGPRMCIDDGR-VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
I R FNTYGPR R V+ + Q + G TR F +V+D V G + +
Sbjct: 169 IIRPFNTYGPR---QSARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTVRGFIAIA 225
Query: 342 EGEH-VGP-FNLGNPGEFTMLELAQVVQETIDPNAKIE-----FRP-NTEDDPHKRKPDI 393
E + VG N+G+ E ++ + +++ E + +IE RP +E + + D
Sbjct: 226 ESDKTVGEVINIGSNFEISIGDTVKLIAEIMGSEVEIETDEERLRPEKSEVE--RLWCDN 283
Query: 394 SRAKELLGWEPKVS 407
S+ KEL GW+PK S
Sbjct: 284 SKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-39
Identities = 95/335 (28%), Positives = 150/335 (44%), Gaps = 38/335 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDN----FFTGRKENVMHHFGNPNFELIRHDV 173
R+++TGGAGF+GS+L + +G VI DN G + + + + D+
Sbjct: 2 RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHGDI 61
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKF--NPVKTIKTNVVGTLNMLGLAKRVG--AR 224
+E L ++D I H A A P +P +TN +GTLN+L A++ A
Sbjct: 62 RNRNDLEDLFEDIDLIIHTA--AQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPNAP 119
Query: 225 FLLTSTSEVYGD-PLQHPQKE--TYW----GNVNPIGV---------RSCYDEGKRTAET 268
F+ TST++VYGD P P +E T + +P G+ S Y K A+
Sbjct: 120 FIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAADQ 179
Query: 269 LTMDYHRGAGVEVRIARIFNTYGPR-MCIDDGRVVSNFVAQALRKEPLTVYG-DGKQTRS 326
+Y R G++ + R GPR +D V+ F+ A+ +PLT++G GKQ R
Sbjct: 180 YVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGGKQVRD 239
Query: 327 FQFVSDLVEGLMRLMEGEHVGP---FNLGNPGE--FTMLELAQVVQETIDPNAKIEFRPN 381
+DLV +R + FN+G E ++LEL + +E + N
Sbjct: 240 VLHSADLVNLYLRQFQNPDRRKGEVFNIGGGRENSVSLLELIALCEEITGRKMESYKDEN 299
Query: 382 TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
D DI + KE GW+P+ R+ L ++
Sbjct: 300 RPGDQIWYISDIRKIKEKPGWKPERDPREILAEIY 334
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-37
Identities = 107/323 (33%), Positives = 152/323 (47%), Gaps = 30/323 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR--GDS-VIVVDNF-FTGRKENVMHHFGNPNFELIRHDV 173
RI+VTGGAGF+GS+ V R I D+ VIV+D + G EN+ NP + ++ D+
Sbjct: 1 RILVTGGAGFIGSNFV-RYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDI 59
Query: 174 -----VEPLLLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGAR 224
V L E D + H A + P I+TNVVGT +L ++ R
Sbjct: 60 GDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFR 119
Query: 225 FLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
F ST EVYGD ET P+ S Y K ++ L YHR G+ I
Sbjct: 120 FHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKAASDHLVRAYHRTYGLPALI 174
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
R N YGP + +++ + AL +PL VYGDG+Q R + +V D + ++E
Sbjct: 175 TRCSNNYGPYQFPE--KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEK 232
Query: 344 EHVGP-FNLGNPGEFTMLELAQVVQETID-PNAKIEFRPNTEDDP-HKRK--PDISRAKE 398
VG +N+G E T LE+ + + E + I ED P H R+ D S+ K
Sbjct: 233 GRVGETYNIGGGNERTNLEVVETILELLGKDEDLITH---VEDRPGHDRRYAIDASKIKR 289
Query: 399 LLGWEPKVSLRKGLPKMVKDFRQ 421
LGW PK + +GL K V+ +
Sbjct: 290 ELGWAPKYTFEEGLRKTVQWYLD 312
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 1e-36
Identities = 101/324 (31%), Positives = 151/324 (46%), Gaps = 35/324 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
+I+VTGGAGF+GS+ V ++ + D V+ +D + G EN+ +P + ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDIC 61
Query: 175 EPLLLE-------VDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKR--VGAR 224
+ L++ D + H A S V P I+TNVVGT +L A++ R
Sbjct: 62 DRELVDRLFKEYQPDAVVHFAA-ESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFR 120
Query: 225 FLLTSTSEVYGD-PLQHPQ-KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
F ST EVYGD L ET NP S Y K ++ L Y R G+
Sbjct: 121 FHHISTDEVYGDLGLDDDAFTET--TPYNP---SSPYSASKAASDLLVRAYVRTYGLPAT 175
Query: 283 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
I R N YGP + +++ + AL +PL VYGDG Q R + +V D + ++
Sbjct: 176 ITRCSNNYGPYQFPE--KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233
Query: 343 GEHVGP-FNLGNPGEFTMLELAQVVQETIDPNAK-----IEFRPNTEDDP-HKRK--PDI 393
+G +N+G E T LE+ + + E + + I F ED P H R+ D
Sbjct: 234 KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITF---VEDRPGHDRRYAIDA 290
Query: 394 SRAKELLGWEPKVSLRKGLPKMVK 417
S+ K LGW P+ + GL K V
Sbjct: 291 SKIKRELGWRPQETFETGLRKTVD 314
|
Length = 340 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 8e-35
Identities = 99/344 (28%), Positives = 153/344 (44%), Gaps = 30/344 (8%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF-------E 167
+ LRI +TG GF+ SH+ RL A G +I D K+N H F +
Sbjct: 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD-----WKKN--EHMSEDMFCHEFHLVD 72
Query: 168 LIRHDVVEPLLLEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RF 225
L + + VD +++LA + + + N + N + + NML A+ G RF
Sbjct: 73 LRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF 132
Query: 226 LLTSTSEVYGDPLQHPQKETYWG----NVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
S++ +Y + Q ET + P + Y K E L Y + G+E
Sbjct: 133 FYASSACIYP---EFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIEC 189
Query: 282 RIARIFNTYGPRMCIDDGR--VVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
RI R N YGP GR + F +AL + ++GDGKQTRSF F+ + VEG++
Sbjct: 190 RIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVL 249
Query: 339 RLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKE 398
RL + + P N+G+ +M E+A++ + I+ P E R D + KE
Sbjct: 250 RLTKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE-GVRGRNSDNTLIKE 308
Query: 399 LLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGGAGATPDTTSSA 442
LGW P + L+ GL +++I KE G+ SS+
Sbjct: 309 KLGWAPTMRLKDGLRITYFWIKEQI---EKEKAEGSDAAAYSSS 349
|
Length = 370 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 35/328 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I+VTGGAG++GSH V +L+ G V+++DN G +E + + D+ +
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVTFVEGDLRDRE 60
Query: 178 LL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 229
LL ++D + H A + P+K + NVVGTLN+L ++ G +F+ +S
Sbjct: 61 LLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSS 120
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR-GAGVEVRIARIFN 288
++ VYG+P P E P+G + Y K +E + D + I R FN
Sbjct: 121 SAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 289 TYGPRMCIDDGRVVSN------FVAQAL--RKEPLTVYG------DGKQTRSFQFVSDLV 334
G D G + Q +++ LT++G DG R + V DL
Sbjct: 176 VAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLA 235
Query: 335 EGLMRLMEGEHVGP----FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRK 390
+ + +E G +NLG F++LE+ + ++ + +E P DP
Sbjct: 236 DAHLAALEYLLNGGGSHVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELAPRRPGDPASLV 295
Query: 391 PDISRAKELLGWEPKVSLRKGLPKMVKD 418
D S+ + LGW+PK L +++KD
Sbjct: 296 ADASKIRRELGWQPK---YTDLEEIIKD 320
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 95/330 (28%), Positives = 147/330 (44%), Gaps = 42/330 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+++VTGGAG++GSH V L+ G V+V+DN G +E + E D+ +
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREAL-PRIEKIRIEFYEGDIRDRA 59
Query: 178 LLE-------VDQIYHLACPAS---PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 226
L+ +D + H A + V P+K NVVGTLN+L + G F+
Sbjct: 60 ALDKVFAEHKIDAVIHFAALKAVGESVQ---KPLKYYDNNVVGTLNLLEAMRAHGVKNFV 116
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
+S++ VYG+P P E P+ + Y K E + D + G+ I R
Sbjct: 117 FSSSAAVYGEPETVPITEEA-----PLNPTNPYGRTKLMVEQILRDLAKAPGLNYVILRY 171
Query: 287 FNTYG--PRMCI-DDGRVVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQFVSD 332
FN G P I +D ++ +N +V Q R+E L ++G DG R + V D
Sbjct: 172 FNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYIHVVD 231
Query: 333 LVEG----LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHK 388
L + L +L G +NLG +++LE+ + ++ E P DP
Sbjct: 232 LADAHVLALEKLENGGGSEIYNLGTGRGYSVLEVVEAFEKVSGKPIPYEIAPRRAGDPAS 291
Query: 389 RKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D S+A+E LGW+PK L M +D
Sbjct: 292 LVADPSKAREELGWKPKRDLE----DMCED 317
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 50/333 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+++VTGGAG++GSH V +L+ G V+V+DN G K ++ + D+++
Sbjct: 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLDRA 57
Query: 178 LLE-------VDQIYHLACPAS---PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
LL +D + H A S V NP+K NVVGTLN++ + G + F+
Sbjct: 58 LLTAVFEENKIDAVVHFAASISVGESVQ---NPLKYYDNNVVGTLNLIEAMLQTGVKKFI 114
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
+ST+ VYG+P P ET P+ + Y K +E + D + +V I R
Sbjct: 115 FSSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSEEILRDAAKANPFKVVILRY 169
Query: 287 FNTYGPRMCIDDGRV------VSN---FVAQAL--RKEPLTVYGDGKQT------RSFQF 329
FN G DG + + A+A +++ L ++GD T R +
Sbjct: 170 FNVAGACP---DGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIH 226
Query: 330 VSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDD 385
V DL + L L EG FNLG+ F++LE+ + ++ + +E P D
Sbjct: 227 VDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGD 286
Query: 386 PHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
P D S+A+++LGW+P L ++KD
Sbjct: 287 PAILVADSSKARQILGWQPT---YDDLEDIIKD 316
|
Length = 329 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 7e-30
Identities = 108/358 (30%), Positives = 163/358 (45%), Gaps = 77/358 (21%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF--------------FTGRKENVMH 159
K L I + G GF+GSHL ++L+ V+ +D + ++GR +
Sbjct: 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQ---- 68
Query: 160 HFGNPNFELIRHDV-VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
F N I+HD +E L+ D +LA +P Y P+ TI +N + L ++
Sbjct: 69 -FHRIN---IKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYC 124
Query: 219 KRVGARFLLTSTSEVYGD------PLQHP--QKETYW---GNVNPI------GVRSCYDE 261
R + ST EVYG P HP Q ++ + +P R Y
Sbjct: 125 SENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYAC 184
Query: 262 GKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRM----CID---DG--RVVSNFVAQAL 310
K+ E L Y GA G+E I R FN GPRM ID +G RV++ F L
Sbjct: 185 AKQLIERLI--YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL 242
Query: 311 RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE-----HVGPFNLGNP-GEFTMLELAQ 364
R+EPL + G+ R+F ++ D +E ++ ++E H+ FN+GNP E T+ +LA+
Sbjct: 243 RREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHI--FNVGNPNNEVTVRQLAE 300
Query: 365 VVQE--------------TIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSL 408
++ E T+D ++K EF DD KR PD++ + LGW PK SL
Sbjct: 301 MMTEVYAKVSGEPALEEPTVDVSSK-EFYGEGYDDSDKRIPDMTIINKQLGWNPKTSL 357
|
Length = 386 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 94/320 (29%), Positives = 154/320 (48%), Gaps = 38/320 (11%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV-- 173
I++TG AGF+ SH+ +RLI ++V+D + +N+ +PNF+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS 68
Query: 174 ---VEPLLL--EVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGA--RF 225
V LL+ +D I H A + V F N + K N+ GT +L K G RF
Sbjct: 69 ADLVNYLLITEGIDTIMHFAA-QTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
Query: 226 LLTSTSEVYGDPLQHPQKETYWGNV--------NPIGVRSCYDEGKRTAETLTMDYHRGA 277
+ ST EVYG+ ++ GN NP Y K AE L M Y R
Sbjct: 128 IHVSTDEVYGET----DEDADVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSY 177
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
G+ V R N YGP + +++ F+ A++ +PL ++GDG RS+ + D+ E
Sbjct: 178 GLPVITTRGNNVYGPNQFPE--KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAF 235
Query: 338 -MRLMEGEHVGPFNLGNPGEFTMLELAQVVQE--TIDPNAKIEFRPNTEDDPHKRKPDIS 394
+ L +GE +N+G E ++++A+ + + +DP I+F N + + D
Sbjct: 236 EVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQ 295
Query: 395 RAKELLGWEPKVSLRKGLPK 414
+ K+ LGW+ + S +GL K
Sbjct: 296 KLKK-LGWQERTSWEEGLKK 314
|
Length = 668 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 81/322 (25%), Positives = 132/322 (40%), Gaps = 41/322 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I+VTG G VGS +V L RG +V F KE +L + V
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENVV----FRTSKE----------LDLTDQEAVRAF 46
Query: 178 LLEV--DQIYHLACPA---SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR---FLLTS 229
+ D + HLA A V P ++ N++ N++ A R G + FL +S
Sbjct: 47 FEKEKPDYVIHLA--AKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSS 104
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF-N 288
Y D P E+ P Y KR L Y + G + I+ + N
Sbjct: 105 CI--YPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDY-ISVMPTN 161
Query: 289 TYGPRMCIDDGRVVSNFVAQALRK---------EPLTVYGDGKQTRSFQFVSDLVEGLMR 339
YGP D S+ + +RK + +TV+G G R F + DL ++
Sbjct: 162 LYGPHDNFDPEN--SHVIPALIRKFHEAKLRGGKEVTVWGSGTPRREFLYSDDLARAIVF 219
Query: 340 LME-GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKE 398
L+E + N+G+ E ++ ELA+ + E + +I F + D ++ D+S+ +
Sbjct: 220 LLENYDEPIIVNVGSGVEISIRELAEAIAEVVGFKGEIVFDTSKPDGQPRKLLDVSKLRA 279
Query: 399 LLGWEPKVSLRKGLPKMVKDFR 420
LGW P L +G+ + + +
Sbjct: 280 -LGWFPFTPLEQGIRETYEWYL 300
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 79/293 (26%), Positives = 122/293 (41%), Gaps = 45/293 (15%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNF-ELIR 170
I+VTGGAGF+GS+LV L RG ++VVDN G K + + +F + +R
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61
Query: 171 HDVVEPLLLEVDQIYHL-ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
+++ I+H AC + + + N T +L RF+ S
Sbjct: 62 KGDENF---KIEAIFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD---YHRGAGVEVRIA-- 284
++ VYG+ ++ N+ P+ V Y K L D G V ++
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNV---YGYSK-----LLFDQWARRHGKEVLSQVVGL 167
Query: 285 RIFNTYGP------RMCIDDGRVVSNFVAQALRKEPLTV------YGDGKQTRSFQFVSD 332
R FN YGP RM VV + Q E + + Y DG+Q R F +V D
Sbjct: 168 RYFNVYGPREYHKGRM----ASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYVKD 223
Query: 333 LVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED 384
+V+ + +E V G FN+G + +LA + + KIE+ ED
Sbjct: 224 VVKVNLFFLENPSVSGIFNVGTGRARSFNDLASATFKALGKEVKIEYIDFPED 276
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 90/333 (27%), Positives = 144/333 (43%), Gaps = 64/333 (19%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+++++TGGAG +GSHL++ L+ RG V+V+DNF TGR+E++ H PN ++ + +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGRREHLPDH---PNLTVVEGSIADK 57
Query: 177 LLLEVDQIYHLACPASPVH----YKFNP---VKTIKTNVVGTLNMLGLAKRVGA-RFLLT 228
L VD+++ P + VH YK +P + TNVVG N++ AK+ G R +
Sbjct: 58 AL--VDKLFGDFKPDAVVHTAAAYK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYF 114
Query: 229 STSEVYGDP-------LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
T+ YG L HP P G S Y K E Y +GV+
Sbjct: 115 QTALCYGLKPMQQPIRLDHP--------RAPPG--SSYAISKTAGE----YYLELSGVDF 160
Query: 282 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY----GDGKQ------TRSFQFVS 331
R+ N GPR I PL + GK+ R F FV
Sbjct: 161 VTFRLANVTGPRNVIG----------------PLPTFYQRLKAGKKCFVTDTRRDFVFVK 204
Query: 332 DLVEGLMRLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNA--KIEFRPNTEDDPHK 388
DL + + ++G G ++ + + ++ EL V E +D ++E DD
Sbjct: 205 DLARVVDKALDGIRGHGAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPS 264
Query: 389 RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
D SR + GW+ L + + + + +
Sbjct: 265 ILLDPSRTFQDFGWKEFTPLSETVSAALAWYDK 297
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 86/348 (24%), Positives = 146/348 (41%), Gaps = 51/348 (14%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
++++ G GF+G HL R++ D + + T R ++++H P D+
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNH---PRMHFFEGDITIN 58
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
+E + + D I L A+P Y P++ + + L ++ A + G + ST
Sbjct: 59 KEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 118
Query: 231 SEVYG-------DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
SEVYG DP P +G +N R Y K+ + + Y G+ +
Sbjct: 119 SEVYGMCPDEEFDPEASP---LVYGPINK--PRWIYACSKQLMDRVIWAYGMEEGLNFTL 173
Query: 284 ARIFNTYGPRMCIDD--------GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335
R FN GP + D RVV+ F+ +R EP+++ G Q R+F + D ++
Sbjct: 174 FRPFNWIGPGL--DSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGID 231
Query: 336 GLMRLME---GEHVGP-FNLGNPGE--------FTMLELAQVVQETIDPNAKI------- 376
LM+++E G G +N+GNP MLELA E + K+
Sbjct: 232 ALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTS 291
Query: 377 -EFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
+ D R P I + LGW PK ++ L ++ + +R +
Sbjct: 292 GAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHV 339
|
Length = 347 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-22
Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 37/332 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I++TGGAGF+GS LV +I D+V+VVD + G ++ + F + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
K+ RF ST EVYGD H + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
+ I N YGP + +++ + AL +PL VYG+G+Q R + +V D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALY 237
Query: 339 RLMEGEHVG-PFNLGNPGEFTMLELAQVVQETID------PNAKIEFR---PNTEDDPH- 387
+ VG +N+G E L++ + + E ++ P +R D P
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGH 297
Query: 388 --KRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D S+ LGW P+ + G+ K V+
Sbjct: 298 DLRYAIDASKIARELGWLPQETFESGMRKTVQ 329
|
Length = 355 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 47/328 (14%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTG------RKENVMHHFGNPNF-ELIR 170
I+VTGGAGF+GS+LV L RG ++VVDN G + + +F + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVIADYIDKEDFLDRLE 60
Query: 171 HDVVEPLLLEVDQIYHL-ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
+++ I+H AC + + + ++ N + +L G F+ S
Sbjct: 61 KGA----FGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYAS 113
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA--RIF 287
++ YGD + + + Y K + + ++ R F
Sbjct: 114 SAATYGD-----GEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYF 168
Query: 288 NTYGPR------MCIDDGRVVSNFVAQALRKEPLTV------YGDGKQTRSFQFVSDLVE 335
N YGPR M V + Q + + + DG+Q R F +V D+V+
Sbjct: 169 NVYGPREYHKGKM----ASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVD 224
Query: 336 GLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHK----RKP 391
+ L+E G FNLG + +LA V + + + KIE+ P E + +
Sbjct: 225 VNLWLLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGRYQYFTQA 284
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDF 419
DI++ + + P +L +G VKD+
Sbjct: 285 DITKLRAAGYYGPFTTLEEG----VKDY 308
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 90/350 (25%), Positives = 148/350 (42%), Gaps = 60/350 (17%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVI-------VVDNFF-TGRKENVM-HHFGNPN 165
+G R++VTG GF GS L L G VI N F +N + G+
Sbjct: 3 QGKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRGD-- 60
Query: 166 FELIR-HDVVEPLLLEV--DQIYHLACPASPV---HYKFNPVKTIKTNVVGTLNMLGLAK 219
IR + + + E + ++HLA A P+ YK +PV+T +TNV+GT+N+L +
Sbjct: 61 ---IRDLNALREAIREYEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAIR 114
Query: 220 RVGA--RFLLTSTSEVYGDPLQHPQKETYWGNV--NPIGVRSCYDEGKRTAETLTMDYHR 275
G+ + ++ + Y + KE WG +P+G Y K AE + Y
Sbjct: 115 ETGSVKAVVNVTSDKCYEN------KEWGWGYRENDPLGGHDPYSSSKGCAELIISSYRN 168
Query: 276 ---------GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326
G+ + AR N G +D R+V + + E + + R
Sbjct: 169 SFFNPENYGKHGIAIASARAGNVIGGGDWAED-RIVPDCIRAFEAGERVIIRNP-NAIRP 226
Query: 327 FQFVSDLVEGLMRLME------GEHVGPFNLGNPGE--FTMLELAQVVQETIDPNAKIEF 378
+Q V + + G + L E E+ +N G E T+LEL + + +A+ +
Sbjct: 227 WQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARYWGEDARWD- 285
Query: 379 RPNTEDDPHKR---KPDISRAKELLGWEPKVSLRKGLPKMV---KDFRQR 422
+ PH+ K D S+AK +LGW P+ +L + L V K++
Sbjct: 286 -LDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKEWLSG 334
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 3e-21
Identities = 91/347 (26%), Positives = 143/347 (41%), Gaps = 50/347 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSV--IVVDN--FFTGRKE-NVMHHFGNPNFELIRHD 172
++TG G GS+L + L+ +G V I + F T R H +P L D
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 173 VVEP-----LLLEV--DQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG-- 222
+ + +L EV D+IY+LA S V F P T + +GTL +L + +G
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQ-SHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEK 122
Query: 223 -ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
RF STSE+YG + PQKET P RS Y K A +T++Y G+
Sbjct: 123 KTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGLFA 177
Query: 282 RIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVY-GDGKQTRSFQFVSDLVEGLMR 339
+FN P R ++ VA+ +Y G+ R + D VE +
Sbjct: 178 CNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWL 237
Query: 340 LMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED--------------- 384
+++ E + + ++ E ++ E + +E+ D
Sbjct: 238 MLQQEEPDDYVIATGETHSVREFVELAFEMVG--IDLEWEGTGVDEKGVDAKTGKIIVEI 295
Query: 385 DPHKRKP--------DISRAKELLGWEPKVSLRKGLPKMVK-DFRQR 422
DP +P D ++AKE LGW P+VSL + + +MV+ D
Sbjct: 296 DPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342
|
Length = 345 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-20
Identities = 91/338 (26%), Positives = 149/338 (44%), Gaps = 43/338 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 175 EPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ L+ D + HLA + P I+TN+VGT +L A
Sbjct: 61 DRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDE 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHP------QKETYWGNVNPIGVRSCYDEGKRTAETLTM 271
K+ RF ST EVYGD L HP ++ + S Y K +++ L
Sbjct: 121 DKKNAFRFHHISTDEVYGD-LPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ + N YGP + +++ + AL +PL +YG G Q R + +V
Sbjct: 180 AWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 332 DLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETID---PNA-----KIEFRPNT 382
D L +++ G +N+G E L++ + + +D P A +I +
Sbjct: 238 DHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITY---V 294
Query: 383 EDDP-HKRK--PDISRAKELLGWEPKVSLRKGLPKMVK 417
D P H R+ D S+ LGW+P+ + G+ K V+
Sbjct: 295 ADRPGHDRRYAIDASKISRELGWKPQETFESGIRKTVE 332
|
Length = 352 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 1e-17
Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 33/326 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV------MHHFGNPNFELIRH 171
R ++TG AGF+GS L++ L+ +VI +DNF TG + N+ + F I+
Sbjct: 17 RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQG 76
Query: 172 DV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARF 225
D+ + VD + H A S +P+ T N+ G LNML A+ + F
Sbjct: 77 DIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSF 136
Query: 226 LLTSTSEVYGDPLQHPQKETYWGN-VNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRI 283
++S YGD P+ E G ++P V +E A+ Y A G+
Sbjct: 137 TYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNE--LYADVFARSYEFNAIGL---- 190
Query: 284 ARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
R FN +G R + V+ ++ L+ EP+ + GDG +R F ++ ++++ +
Sbjct: 191 -RYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSA 249
Query: 342 EGEHVGP----FNLGNPGEFTMLELAQVVQETID--PNAKIEFRPNTED----DPHKRKP 391
+ +N+ ++ EL ++++ ++ N + P +D D +
Sbjct: 250 TTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQA 309
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVK 417
DI++ K L +EP+ +++GL + +K
Sbjct: 310 DITKIKTFLSYEPEFDIKEGLKQTLK 335
|
Length = 348 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 89/340 (26%), Positives = 134/340 (39%), Gaps = 67/340 (19%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV--IV--VDNFFTGRKENVMH--HFGNPNFELIRH--- 171
+TG G GS+L + L+++G V I+ NF T R +++ H +L H
Sbjct: 11 ITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKL--HYGD 68
Query: 172 -----------DVVEPLLLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNML---- 215
D ++P D++Y+LA S V F P T G L +L
Sbjct: 69 LSDASSLRRWLDDIKP-----DEVYNLAA-QSHVAVSFEMPDYTADVVATGALRLLEAVR 122
Query: 216 --GLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
G ++ +SE+YG PQ ET P RS Y K A T++Y
Sbjct: 123 LHGQETGRQIKYYQAGSSEMYGS-TPPPQSET-----TPFHPRSPYAVAKVAAHWYTVNY 176
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFV------AQALRKEPL--TVY-GDGKQT 324
G+ +FN PR G NFV A K L ++ G+ +
Sbjct: 177 REAYGLFACNGILFNHESPRR----GE---NFVTRKITRAVGRIKVGLQKKLFLGNLDAS 229
Query: 325 RSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIE------- 377
R + F D VE + +++ E + + T+ E + + N K
Sbjct: 230 RDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRY 289
Query: 378 FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
FRP E D K D S+A+E+LGW+PKV + + MV
Sbjct: 290 FRP-AEVD--NLKGDASKAREVLGWKPKVGFEQLVKMMVD 326
|
Length = 340 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 69/281 (24%), Positives = 101/281 (35%), Gaps = 62/281 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN-----VMHHFGNPN-----FE 167
+I++ GG F+G LV+ L+A G V V F GR + V H G+ N E
Sbjct: 2 KILIIGGTRFIGKALVEELLAAGHDVTV---FNRGRTKPDLPEGVEHIVGDRNDRDALEE 58
Query: 168 LIRH---DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 224
L+ DVV VD +P L K +
Sbjct: 59 LLGGEDFDVV------VDT-----IAYTPRQ---------------VERALDAFKGRVKQ 92
Query: 225 FLLTSTSEVYGDPLQH-----PQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
++ S++ VY P + P +E ++ Y GKR AE + ++
Sbjct: 93 YIFISSASVYLKPGRVITESTPLREPDAVGLSDPWD---YGRGKRAAEDVLIEAAAFPYT 149
Query: 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF--VSDLVEGL 337
VR I YGP D ++ F + R P+ V GDG QF V DL L
Sbjct: 150 IVRPPYI---YGPG---DYTGRLAYFFDRLARGRPILVPGDG--HSLVQFIHVKDLARAL 201
Query: 338 MRLMEGEHV--GPFNLGNPGEFTMLELAQVVQETIDPNAKI 376
+ G FN+ T EL + + + A+I
Sbjct: 202 LGAAGNPKAIGGIFNITGDEAVTWDELLEACAKALGKEAEI 242
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-16
Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 44/335 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDVV 174
+R++VTGG+G++GSH +L+ G V+++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 175 EPLLLEVDQIYHLACPASPVHYK---------FNPVKTIKTNVVGTLNMLGLAKRVGAR- 224
LL +I H + +H+ P++ NV GTL ++ + +
Sbjct: 61 NEALL--TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVR 282
+ +S++ VYGD + P E++ P G +S Y + K E + D + +
Sbjct: 119 LIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIA 173
Query: 283 IARIFNTYGPR----MCIDDGRVVSN---FVAQAL--RKEPLTVYG------DGKQTRSF 327
+ R FN G M D + +N ++AQ R++ L ++G DG R +
Sbjct: 174 LLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 328 QFVSDLVEGLMRLMEGEHVGP----FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DL +G + ME P +NLG ++L++ + F P E
Sbjct: 234 IHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
D D S+A L W +V+ + L +M +D
Sbjct: 294 GDLPAYWADASKADRELNW--RVT--RTLDEMAQD 324
|
Length = 338 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 96/350 (27%), Positives = 153/350 (43%), Gaps = 62/350 (17%)
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH------HFGNPNF 166
G I+VTGGAG++GSH V +L+ G V+V+DN +E + G+ N
Sbjct: 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGD-NL 60
Query: 167 ELIRHDVVEPLLLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTL 212
+ D+ + LE D + H A A P+ Y N N+VGT+
Sbjct: 61 VFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTI 113
Query: 213 NMLGLAKRVGARFLLTSTS-EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271
N+L + + G + L+ S+S VYG P + P E + P+ + Y K E +
Sbjct: 114 NLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPYGRTKLFIEEICR 168
Query: 272 DYHRGAGVEVRIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG- 319
D H + E +I R FN G P I +D + + N +V Q A+ R+ LTV+G
Sbjct: 169 DIHA-SDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGN 227
Query: 320 -----DGKQTRSFQFVSDLVEG----LMRLMEGEHVG--PFNLGNPGEFTMLELAQVVQE 368
DG R + V DL +G L +L +G +NLG ++LE+ ++
Sbjct: 228 DYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEK 287
Query: 369 TIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
++ P D + +A++ LGW+ K G+ +M +D
Sbjct: 288 ASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWKAKY----GIDEMCRD 333
|
Length = 352 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-16
Identities = 72/320 (22%), Positives = 114/320 (35%), Gaps = 59/320 (18%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
++I++TG G +G+ L L + VI D ++ D V
Sbjct: 1 MKILITGANGQLGTELRRALPGEFE-VIATD---------------RAELDITDPDAVLE 44
Query: 177 LLLEV--DQIYHLA------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
++ E D + + A S P N G N+ A VGAR +
Sbjct: 45 VIRETRPDVVINAAAYTAVDKAES------EPELAFAVNATGAENLARAAAEVGARLVHI 98
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST V+ P KET NP+ V Y K E + +R + ++
Sbjct: 99 STDYVFDGEKGGPYKET--DTPNPLNV---YGRSKLAGEEAVRAAGPRHLI-LRTSWVYG 152
Query: 289 TYGPRMCIDDGRVVSNFVAQALR--KEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346
YG +NFV LR KE + Q S + DL + ++ L+E E
Sbjct: 153 EYG-----------NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKE 201
Query: 347 GP-FNLGNPGEFTMLELAQVV-------QETIDPNAKIEFRPNTEDDPHKRKPDISRAKE 398
G ++L N GE + E A+ + E I+P A P P D + ++
Sbjct: 202 GGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIA-SAEYPTPAKRPANSSLDTKKLEK 260
Query: 399 LLGWEPKVSLRKGLPKMVKD 418
G R+ L ++ +
Sbjct: 261 AFGLSLP-EWREALKALLDE 279
|
Length = 281 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 76/343 (22%), Positives = 116/343 (33%), Gaps = 73/343 (21%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSV-IVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
I+VTG GF+GS+LV L+A+G V +V R + E++ D+ +
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRALV------RSGSDAVLLDGLPVEVVEGDLTDAA 54
Query: 178 LL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
L D+++HLA S K + +TNV GT N+L A G R + TS+
Sbjct: 55 SLAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSSI 112
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI---ARIFN 288
G P ET N + Y K AE ++ G++V I + +F
Sbjct: 113 AALGGPPDGRIDET--TPWNERPFPNDYYRSKLLAELEVLEAAA-EGLDVVIVNPSAVFG 169
Query: 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348
G V +++ L Y G SF V D+ EG H+
Sbjct: 170 PGDEGPTS-TGLDVLDYLNGKLP-----AYPPGGT--SFVDVRDVAEG--------HIAA 213
Query: 349 FNLGNPGE--------FTMLELAQVVQETIDPNAKIEFRPN----------------TED 384
G GE + +L + + E P T
Sbjct: 214 MEKGRRGERYILGGENLSFKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTGK 273
Query: 385 DP-----------HKRKPDISRAKELLGWEPKVSLRKGLPKMV 416
P +A+ LG+ P L + L +
Sbjct: 274 PPLLTPRTARVLRRNYLYSSDKARRELGYSP-RPLEEALRDTL 315
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 80/280 (28%), Positives = 113/280 (40%), Gaps = 63/280 (22%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH--------HFGNPNF 166
KG I+VTGGAG +GS LV +++ G ++V R EN +H F +
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIV----FDRDENKLHELVRELRSRFPHDKL 56
Query: 167 ELIRHDVVEPLLL-------EVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLN 213
I DV + L D ++H A K NP + IKTNV+GT N
Sbjct: 57 RFIIGDVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKN 110
Query: 214 MLGLAKRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272
++ A G +F+ ST + VNP+ V KR AE L +
Sbjct: 111 VIDAAIENGVEKFVCISTDKA----------------VNPVNV---MGATKRVAEKLLLA 151
Query: 273 YHRGAG-VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ + + R N G R G V+ F Q + PLTV D TR F +
Sbjct: 152 KNEYSSSTKFSTVRFGNVLGSR-----GSVLPLFKKQIKKGGPLTVT-DPDMTRFFMTIP 205
Query: 332 ---DLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQE 368
DLV L + G+ G F L +L+LA+ + E
Sbjct: 206 EAVDLV--LQACILGDGGGIFLLDMGPPVKILDLAEALIE 243
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 84/344 (24%), Positives = 126/344 (36%), Gaps = 89/344 (25%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
++++TG +GFVG L +RL++ PN LI DVV P
Sbjct: 2 KVLITGASGFVGQRLAERLLSDV-----------------------PNERLILIDVVSPK 38
Query: 178 -------------------LLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTL 212
L+E D ++HLA S + + + NV GT
Sbjct: 39 APSGAPRVTQIAGDLAVPALIEALANGRPDVVFHLAAIVSG-GAEADFDLGYRVNVDGTR 97
Query: 213 NMLGLAKRVGA--RFLLTSTSEVYGDPLQHP-QKETYWGNVNPIGVRSCYDEGKRTAETL 269
N+L ++ G RF+ TS+ VYG PL +P T ++P S Y K E L
Sbjct: 98 NLLEALRKNGPKPRFVFTSSLAVYGLPLPNPVTDHT---ALDPA---SSYGAQKAMCELL 151
Query: 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQA----LRKEPL----TVYGDG 321
DY R V+ R R+ P +C+ GR N A A + +EPL
Sbjct: 152 LNDYSRRGFVDGRTLRL-----PTVCVRPGR--PNKAASAFASTIIREPLVGEEAGLPVA 204
Query: 322 KQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK------ 375
+Q R + + + + + G + T+ L+ V E +
Sbjct: 205 EQLRYWL--KSVATAVANFVHAAELPAEKFGPRRDLTLPGLSVTVGEELRALIPVAGLPA 262
Query: 376 ---IEFRPNTEDDPHKRKP----DISRAKELLGWEPKVSLRKGL 412
I F P+ E D +RA+ LG+ SL GL
Sbjct: 263 LMLITFEPDEEIKRIVFGWPTRFDATRAQS-LGFVADSSLAAGL 305
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 82/377 (21%), Positives = 127/377 (33%), Gaps = 84/377 (22%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM------------------ 158
+++++ GG G+ G L RG V +VDN R + +
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 159 -HHFGNPNFELIRHDVVEPLLL-------EVDQIYHLAC-PASP-----VHYKFNPVKTI 204
G E D + L E D + H A ++P + T
Sbjct: 61 KELTGKTI-EFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHA---NYTQ 116
Query: 205 KTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDP----LQHPQKETYWG----NVNPIG 254
NV+GTLN+L K + T YG P + + G P
Sbjct: 117 HNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQ 176
Query: 255 VRSCYDEGKRTAETLTMDYHRGAGV---EVRIARIFNTYGPRMCIDD------------G 299
S Y K M + G+ ++ ++ T D+ G
Sbjct: 177 AGSWYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYDGVFG 236
Query: 300 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTM 359
V++ F QA PLTVYG G QTR F + D V+ L +E N GE+ +
Sbjct: 237 TVLNRFCVQAAIGHPLTVYGKGGQTRGFISIRDTVQCLELALE-------NPAKAGEYRV 289
Query: 360 L----------ELAQVVQET---IDPNAKIEFRPN--TEDDPHKRKPDISRAKELLGWEP 404
ELA++V E + + K+E PN E + H ++ + LG EP
Sbjct: 290 FNQFTEQFSVGELAEMVAEAGSKLGLDVKVEHLPNPRVEAEEHYYNAKNTKLLD-LGLEP 348
Query: 405 KVSLRKGLPKMVKDFRQ 421
L ++ +
Sbjct: 349 HYLSESLLDSILNFAVK 365
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 87/349 (24%), Positives = 139/349 (39%), Gaps = 70/349 (20%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENV---MHHFGNPNFELIRHDV 173
+TG G GS+L + L+ +G V + +F T R E++ H+ +L D+
Sbjct: 5 ITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDL 64
Query: 174 VEPLLL-------EVDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNML------GLAK 219
+ L + +IY+LA S V F P T + +GTL +L GL K
Sbjct: 65 TDSSNLRRIIDEIKPTEIYNLAA-QSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIK 123
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
V +F STSE+YG + PQ ET P RS Y K A +T++Y G+
Sbjct: 124 SV--KFYQASTSELYGKVQEIPQNET-----TPFYPRSPYAAAKLYAHWITVNYREAYGL 176
Query: 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQ---------ALRKEPLTVYGDGKQTRSFQFV 330
+FN PR NFV + L + G+ R +
Sbjct: 177 FAVNGILFNHESPRRG-------ENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHA 229
Query: 331 SDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED------ 384
D VE + +++ + + + ++ E +V E I + ++ +
Sbjct: 230 KDYVEAMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYI--GKTLNWKDKGINEVGRCK 287
Query: 385 ---------DPHKRKP--------DISRAKELLGWEPKVSLRKGLPKMV 416
DP +P D ++AKE LGW+P+VS K + +MV
Sbjct: 288 ETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMV 336
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 45/315 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR----KENVMH----HFGNPNFELI 169
++VTG GF+ SH+V++L+ G V T R + N E +
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVR-----GTVRSLSKSAKLKALLKAAGYNDRLEFV 55
Query: 170 RHDVV------EPLLLEVDQIYHLACPASPVHYKFNPVKT--IKTNVVGTLNMLGLAKRV 221
D + + L VD + H+ ASP + + I V GTLN+L AK
Sbjct: 56 IVDDLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAA 112
Query: 222 GA--RFLLTSTSEVYGDPLQHPQKETY----WGNVNPIGVRS--CYDEGKRTAETLTMDY 273
G+ R +LTS+ GDP + + W ++ Y K AE ++
Sbjct: 113 GSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEF 172
Query: 274 HRGAGVEVRIARIFNTY--GPRMCIDDGRVVSNFVAQ-ALRKEPLTVYGDGKQTRSFQFV 330
+ + + I Y GP + D+ + + + K P F +V
Sbjct: 173 VKENKPKFELITINPGYVLGPSLLADELNSSNELINKLLDGKLP-----AIPPNLPFGYV 227
Query: 331 S--DLVEGLMRLME-GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR-PNTEDDP 386
D+ + +R +E E G + + G F+ E+A +++E P F PN
Sbjct: 228 DVRDVADAHVRALESPEAAGQRFIVSAGPFSFQEIADLLREEF-PQLTAPFPAPNPLMLS 286
Query: 387 HKRKPDISRAKELLG 401
K D +++ELLG
Sbjct: 287 ILVKFDNRKSEELLG 301
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 35/269 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFEL----IRH- 171
++VTGG+GF G LV +L+ R G V D G + + +PN E I
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA---LSAWQHPNIEFLKGDITDR 57
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTI-KTNVVGTLNMLGLAKRVGA-RFLLTS 229
+ VE L D ++H A+ V P + NV GT N+L +R G +F+ TS
Sbjct: 58 NDVEQALSGADCVFHT---AAIVP-LAGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113
Query: 230 TSEVY--GDPLQHPQKETYWGNVNPIGVRS--CYDEGKRTAETLTMDYHRGAGVEVRIAR 285
+S V G + + + P Y E K AE + ++ + + R
Sbjct: 114 SSSVIFGGQNIHNGDETL------PYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALR 167
Query: 286 IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345
+GP D +V A + V+G G F +V +L +
Sbjct: 168 PAGIFGPG----DQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALV 223
Query: 346 VG------PFNLGNPGEFTMLELAQVVQE 368
G + + + M EL + V +
Sbjct: 224 KGKTISGQTYFITDAEPHNMFELLRPVWK 252
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 50/342 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDV--- 173
R+++ G GF+G+HL +RL+ + + + + + F G+P F + D+
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEV----YGLDIGSDAISRFLGHPRFHFVEGDISIH 372
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 373 SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPST 432
Query: 231 SEVYG---DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
SEVYG D + ++T V PI R Y K+ + + Y G+ + R
Sbjct: 433 SEVYGMCTDK--YFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRP 490
Query: 287 FNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R+
Sbjct: 491 FNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRI 550
Query: 341 ME-------GEHVGPFNLGNP-GEFTMLELAQVVQETID---------PNA---KIE--- 377
+E G+ + N+GNP E ++ ELA+++ + + P A +E
Sbjct: 551 IENKDNRCDGQII---NIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSS 607
Query: 378 FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
+ D RKP I A+ LL WEPK+ +++ + + + DF
Sbjct: 608 YYGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETL-DF 648
|
Length = 660 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 84/351 (23%), Positives = 133/351 (37%), Gaps = 83/351 (23%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN---VMHHFGNPNFELIR- 170
G ++VTGG G +GS L +++ I++ R E ++ F ++
Sbjct: 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIIL----FSRDEYKLYLIDMELREKFPELKL 304
Query: 171 ---------HDVVEPLL--LEVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLN 213
D VE + +VD ++H A K +NP + IKTNV+GT N
Sbjct: 305 RFYIGDVRDRDRVERAMEGHKVDIVFHAAA------LKHVPLVEYNPEEAIKTNVLGTEN 358
Query: 214 MLGLAKRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272
+ A + G +F+L ST + VNP V KR AE L
Sbjct: 359 VAEAAIKNGVKKFVLISTDKA----------------VNPTNV---MGATKRLAEKLFQA 399
Query: 273 YHR---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329
+R G G + R N G R G V+ F Q PLTV D TR F
Sbjct: 400 ANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTV-TDPDMTRFFMT 453
Query: 330 VSDLVEGLMR---LMEGEHVGPFNLGNPGEFTMLELAQVVQE----TIDPNAKIEF---R 379
+ + V+ +++ + +G + ++G P +++LA+ + E T + I+ R
Sbjct: 454 IPEAVQLVLQAGAIAKGGEIFVLDMGEP--VKIIDLAKAMIELAGQTPPGDIAIKIIGLR 511
Query: 380 PN--------TEDDPHKRK--PDISRAKELLGWEPKVSLRK-GLPKMVKDF 419
P + D+ P I R P + L K +D
Sbjct: 512 PGEKLYEELLSRDESVSATEHPKIYRIPPEPLPLPDLRKLLARLQKAAEDG 562
|
Length = 588 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 77/327 (23%), Positives = 121/327 (37%), Gaps = 55/327 (16%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSV-IVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+++VTG GF+G LVD+L++RG+ V I V N V+ + +
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLAELPDIDS-------FTD 53
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTI------KTNVVGTLNMLGLAKRVGA-RFLLTS 229
L L VD + HL A+ VH N K N T + A R G RF+ S
Sbjct: 54 LFLGVDAVVHL---AARVH-VMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRFVFLS 109
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
+ +V G+ + P + Y K AE ++ G+EV I R
Sbjct: 110 SVKVNGEGTVGAPFDETD-PPAP---QDAYGRSKLEAERALLELGASDGMEVVILRPPMV 165
Query: 290 YGPRMCIDDGRVVSNF--VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV- 346
YGP V NF + + + + G K RS + +LV+ + +
Sbjct: 166 YGP-------GVRGNFARLMRLIDRGLPLPPGAVKNRRSLVSLDNLVDAIYLCISLPKAA 218
Query: 347 -GPFNLGNPGEFTMLELAQVVQETID--------PNAKIEFRPNTEDDPHKRKP------ 391
G F + + + EL ++ + P + F KR
Sbjct: 219 NGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLRFAAKL---LGKRAVIQRLFG 275
Query: 392 ----DISRAKELLGWEPKVSLRKGLPK 414
D + + LGW P +SL +GL +
Sbjct: 276 SLQYDPEKTQNELGWRPPISLEEGLQE 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 78/313 (24%), Positives = 124/313 (39%), Gaps = 31/313 (9%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLE 180
V G G VGS +V +L A G + +V+ KE +L R VE +
Sbjct: 2 VAGHRGLVGSAIVRKLEALGFTNLVLRT----HKE----------LDLTRQADVEAFFAK 47
Query: 181 VDQIY--HLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVGAR---FLLTSTSEVY 234
Y A +H P I+ N+ N++ A R G + FL +S +Y
Sbjct: 48 EKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSC--IY 105
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR- 293
P ET P Y K + Y G + N YGP
Sbjct: 106 PKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHD 165
Query: 294 -MCIDDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-V 346
++ V+ + A+A + V+G G R F V DL + ++ LM
Sbjct: 166 NFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGA 225
Query: 347 GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV 406
N+G+ E T+ ELA++V+E + ++ + + D ++ D S+ + L GW+PK
Sbjct: 226 EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRSL-GWDPKF 284
Query: 407 SLRKGLPKMVKDF 419
SL+ GL + K +
Sbjct: 285 SLKDGLQETYKWY 297
|
Length = 306 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 83/347 (23%), Positives = 146/347 (42%), Gaps = 51/347 (14%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVI-------VVDNFFT--GRKENVMHHFGNPN 165
+G +++VTG GF GS L L+ G V N F + + HFG+
Sbjct: 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIR 62
Query: 166 -FELIRHDVVEPLLLEVDQIYHLACPASPV---HYKFNPVKTIKTNVVGTLNMLGLAKRV 221
+R + E + + ++HLA A P+ Y +P++T +TNV+GT+N+L + +
Sbjct: 63 DAAKLRKAIAE---FKPEIVFHLA--AQPLVRKSYA-DPLETFETNVMGTVNLLEAIRAI 116
Query: 222 G---ARFLLTSTSEVYGDPLQHPQKETYWG--NVNPIGVRSCYDEGKRTAETLTMDYHR- 275
G A +T + + Y + E WG +P+G Y K AE + Y
Sbjct: 117 GSVKAVVNVT-SDKCYRN------DEWVWGYRETDPLGGHDPYSSSKACAELVIASYRSS 169
Query: 276 ------GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329
G+++ AR N G +D R++ + + + + + + TR +Q
Sbjct: 170 FFGVANFHGIKIASARAGNVIGGGDWAED-RLIPDVIRAFSSNKIVIIR-NPDATRPWQH 227
Query: 330 VSDLVEGLMRLME------GEHVGPFNLG--NPGEFTMLELAQVVQETIDPNAKIEFRPN 381
V + + G + L E E G +N G ++EL E + +
Sbjct: 228 VLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDS 287
Query: 382 TEDDPHKR---KPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425
+ PH+ K D S+A+ LLGW P+ L + + + V ++ + G
Sbjct: 288 DLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRG 334
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 47/303 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I++TG G +G LV L RG VI TGR +L D VE
Sbjct: 1 KILITGATGMLGRALVRLLKERGYEVI-----GTGRS-----RASLFKLDLTDPDAVEEA 50
Query: 178 LLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY- 234
+ + D I + A + +P + NV+ N+ AK VGAR + ST V+
Sbjct: 51 IRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGARLIHISTDYVFD 110
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF--NTYGP 292
G + P KE NP+ V Y + K E ++ + + +R + ++ G
Sbjct: 111 GK--KGPYKEE--DAPNPLNV---YGKSKLLGEVAVLNANPRYLI-LRTSWLYGELKNG- 161
Query: 293 RMCIDDGRVVSNFVAQALRK--EPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVGPF 349
NFV LR E V Q S + +DL + ++ L+E G +
Sbjct: 162 ----------ENFVEWMLRLAAERKEVNVVHDQIGSPTYAADLADAILELIERNSLTGIY 211
Query: 350 NLGNPGEFTMLELAQVVQETID-PNAKIEFRPNTEDDPH--KRKP-----DISRAKELLG 401
+L N G + E A+++ + + P+ +I +P T + R+P D S+ +EL G
Sbjct: 212 HLSNSGPISKYEFAKLIADALGLPDVEI--KPITSSEYPLPARRPANSSLDCSKLEELGG 269
Query: 402 WEP 404
+P
Sbjct: 270 IKP 272
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 64/259 (24%), Positives = 99/259 (38%), Gaps = 41/259 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TG G +G LV +L + V+V +L + +E L
Sbjct: 1 RILITGANGQLGRELVQQL-SPEGRVVVA--------------LTRSQLDLTDPEALERL 45
Query: 178 LLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235
L + D + + A + +P K N + N+ A R GAR + ST V+
Sbjct: 46 LRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFD 105
Query: 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ P +E NP+ V Y + K E A + VR + ++ G R
Sbjct: 106 GEGKRPYRED--DATNPLNV---YGQSKLAGEQAVRAAGPNALI-VRTSWLYGGGGGR-- 157
Query: 296 IDDGRVVSNFVAQALRK----EPLTVYGDGKQTRSFQFVSDLVEGLMRLME--GEHVGPF 349
NFV LR E L V D Q S + DL + L++ G +
Sbjct: 158 --------NFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQRLARARGVY 207
Query: 350 NLGNPGEFTMLELAQVVQE 368
+L N G+ + E AQ + E
Sbjct: 208 HLANSGQCSWYEFAQAIFE 226
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 55/265 (20%), Positives = 93/265 (35%), Gaps = 50/265 (18%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLE 180
V G +G +G + L RG V +V +G K P E++ D ++ +
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSR--SGSKLA-----WLPGVEIVAADAMDASSVI 56
Query: 181 -----VDQIYHLACPASPV-HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
D IYH A PA F P+ N++ A+ GA+ +L +Y
Sbjct: 57 AAARGADVIYHCANPAYTRWEELFPPLME---------NVVAAAEANGAKLVLPGNVYMY 107
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGK-RTA-ETLTMDYHRGAGVEVRIARIFNTYGP 292
G P E P +G+ R E + H + I R + YGP
Sbjct: 108 GPQAGSPITEDT--PFQPTT-----RKGRIRAEMEERLLAAHAKGDIRALIVRAPDFYGP 160
Query: 293 RMCIDDGRVVSNF----VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-----G 343
++++ + L+ + G+ + ++ D+ L+ L E G
Sbjct: 161 -------GAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVTLAEEPDAFG 213
Query: 344 EHVGPFNLGNPGEFTMLELAQVVQE 368
E ++L G T EL +
Sbjct: 214 E---AWHLPGAGAITTRELIAIAAR 235
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 48/165 (29%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 120 VVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
+VTGG GF+G H+V L+ G+ V V D F+ + I DV
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITY--IEGDVTDKQ 58
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-TSTS 231
+ L D + H A V K +K NV GT N+L + G R L+ TS+
Sbjct: 59 DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117
Query: 232 EV-----YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271
EV YG P+ + + T + + Y E K AE L +
Sbjct: 118 EVVGPNSYGQPIVNGDETTPY----ESTHQDPYPESKALAEKLVL 158
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVD---NFFTGRKENVMHHFGNPNFELIRHDVVE 175
+ VTGG GF+G HLV RL+ G V+V+ + + ++ D+ +
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60
Query: 176 P-----------LLLEVDQIYHLACPASPVHYKFN--PVKTIKTNVVGTLNMLGLAKRVG 222
P L +VD + H A AS Y F +TN+ GT ++L LA R+
Sbjct: 61 PNLGLSAAASRELAGKVDHVIHCA--AS---YDFQAPNEDAWRTNIDGTEHVLELAARLD 115
Query: 223 A-RFLLTSTSEVYGDP 237
RF ST+ V G+
Sbjct: 116 IQRFHYVSTAYVAGNR 131
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-10
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 62/324 (19%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG G +G L L RG V+ R E +L + V L+
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVA-----LDRPE----------LDLTDPEAVAALV 45
Query: 179 LEV--DQIYHLACPA-SPVH-YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
E D + + A A + V + P N +G N+ GA + ST V+
Sbjct: 46 REARPDVVVNAA--AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVF 103
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
P +E P+ V Y K E + + + +R A ++ YG
Sbjct: 104 DGAKGGPYRED--DPTGPLNV---YGRTKLAGEQAVLAANPRHLI-LRTAWVYGEYGN-- 155
Query: 295 CIDDGRVVSNFVA----QALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-- 348
NFV A ++ L V D Q S DL + L+ L+ GP
Sbjct: 156 ---------NFVKTMLRLAAERDELRVVDD--QLGSPTSARDLADALLALIRKRLRGPAL 204
Query: 349 ---FNLGNPGEFTMLELAQVVQET--IDPNAKIEFRP-NTEDDPHK-RKP-----DISRA 396
++L GE + + A+ + + D RP T + P R+P D S+
Sbjct: 205 AGTYHLAGSGETSWYDFARAIFDEAGADGG---RVRPIPTAEYPTPARRPANSVLDTSKL 261
Query: 397 KELLGWEPKVSLRKGLPKMVKDFR 420
+ G R+ L +++ +
Sbjct: 262 EATFGIPLP-DWREALAEVLDELL 284
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 92/329 (27%), Positives = 128/329 (38%), Gaps = 54/329 (16%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNP-------NFEL 168
RI++TGG G +GS L L R D+VI D RK P +F+
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASDI----RKPPAHVVLSGPFEYLDVLDFKS 56
Query: 169 IRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
+ VV ++ I HLA S V K NP N+ G N+L LA+ R +
Sbjct: 57 LEEIVVN---HKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIFVP 112
Query: 229 STSEVYGDPLQHPQKETYWGNV-NPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIAR-- 285
ST +G P+ T + P R+ Y K AE L YH GV+ R R
Sbjct: 113 STIGAFGP--TTPRNNTPDDTIQRP---RTIYGVSKVAAELLGEYYHHKFGVDFRSLRYP 167
Query: 286 --IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
I P D V F AL+K T Y ++ D + + LME
Sbjct: 168 GIISYDTLPGGGTTD-YAVQIFYE-ALKKGKYTCYLKPDTRLPMMYMPDALRATIELMEA 225
Query: 344 E-----HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP------- 391
H +N+ FT E+A +++ I P +I + DP +R+
Sbjct: 226 PAEKLKHRRTYNI-TAMSFTPEEIAAEIKKHI-PEFQITYEV----DP-RRQAIADSWPM 278
Query: 392 --DISRAKELLGWEPKVSLRKGLPKMVKD 418
D S A++ GW+ K L MVKD
Sbjct: 279 SLDDSNARKDWGWKHKY----DLDSMVKD 303
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 6e-09
Identities = 85/330 (25%), Positives = 121/330 (36%), Gaps = 100/330 (30%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV---MHH--FGNPNFELIRH-- 171
++VTGG G +GS L +++ I++ F R E + N +R
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIIL---F-SRDEFKLYEIRQELRQEYNDPKLRFFI 56
Query: 172 -DVVEPLLLE-------VDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGL 217
DV + LE VD ++H A K +NP++ IKTNV+GT N+
Sbjct: 57 GDVRDRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEA 110
Query: 218 AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
A G +F+L ST + VNP V KR AE L +R
Sbjct: 111 AIENGVEKFVLISTDKA----------------VNPTNV---MGATKRLAEKLFQAANRE 151
Query: 277 AG-VEVRIA--RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV--- 330
+G + R + R N G R G V+ F Q P+TV TR F +
Sbjct: 152 SGSGKTRFSVVRFGNVLGSR-----GSVIPLFKKQIANGGPVTV-THPDMTRFFMTIPEA 205
Query: 331 SDLVEGLMRLMEGEHVGPFNLGNPGE---------FTMLELAQVVQETIDPNAKIEF--- 378
LV L G G GE +++LA+ + I +I+
Sbjct: 206 VQLV-----LQAGAM------GKGGEIFVLDMGPPVKIVDLAKAMIGDI----EIKITGL 250
Query: 379 RPN--------TEDDPHKRK--PDISRAKE 398
RP ED+ P I RAK
Sbjct: 251 RPGEKLYEELLIEDESVTTTDHPKIYRAKP 280
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 41/204 (20%), Positives = 63/204 (30%), Gaps = 39/204 (19%)
Query: 118 RIVVTGGAGFVGSHLV------------------------DRLIARGDSVIVVDNFFTGR 153
+++TG GF+G++L+ RL D D R
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61
Query: 154 KENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLN 213
E V P+ L E L VD I H A+ V++ F + NV+GT
Sbjct: 62 VEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTAE 117
Query: 214 MLGLAKRVGARFL-LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272
+L LA + L S+ V + + + L
Sbjct: 118 VLRLAATGKPKPLHYVSSISVGETEYYSNFTVDF----------DEISPTRNVGQGLAGG 167
Query: 273 YHRGAGVEVRIARIFNTYGPRMCI 296
Y R V ++ R G + I
Sbjct: 168 YGRSKWVAEKLVREAGDRGLPVTI 191
|
Length = 382 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 45/234 (19%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
++I++TG GF+G +L+ RL + D I FF R + EL +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKDDDI----FFYDR--------ESDESEL------DD 42
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR--FLLTSTSEVY 234
L D I+HLA P + NV T +L R G + LL+S+ +
Sbjct: 43 FLQGADFIFHLAGVNRPKD----EAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQAA 98
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
D NP Y + K AE L +Y R G V I R+ N +G
Sbjct: 99 LD--------------NP------YGKSKLAAEELLQEYARETGAPVYIYRLPNVFGKWC 138
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348
+ V+ F R P+ + + ++ D+V+ L++L+EG
Sbjct: 139 RPNYNSAVATFCYNIARDLPIQINDPA-AELTLVYIDDVVDELIQLLEGAPTYS 191
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 39/197 (19%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVV-----DNFFTG--RKENVMHHFGNPNFELIRH-- 171
+TG GF+G L+++L+ V + + + R + +G +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 172 -----DVVEPLL-----------LEVDQIYHLACPASPVHYKFN-PVKTIK-TNVVGTLN 213
D+ EP L EVD I H A A+ F P ++ TNV+GT
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--AT---VNFVEPYSDLRATNVLGTRE 115
Query: 214 MLGLAKRVG-ARFLLTSTSEVYGDPLQH----PQKETYWGNVNPIGVRSCYDEGKRTAET 268
+L LAK++ F ST+ V G+ P K G+ + Y + K AE
Sbjct: 116 VLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNGYTQSKWLAEQ 175
Query: 269 LTMDYHRGAGVEVRIAR 285
L + G+ V I R
Sbjct: 176 LVREAAG--GLPVVIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV-IVVDNFFTGRKENVMH----HFGNPNFELIRHDVVE 175
VTG +GF+GS LV RL+ RG +V V + G ++ V H +L + D+++
Sbjct: 3 VTGASGFIGSWLVKRLLQRGYTVRATVRD--PGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 176 PLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 228
+ D ++H+A P + + I+ V GTLN+L + + R + T
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDF-DSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFT 119
Query: 229 -STSEVYGDPLQHPQK---ETYWGNVN 251
S + V +P + K E+ W +++
Sbjct: 120 SSVAAVVWNPNRGEGKVVDESCWSDLD 146
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV----- 173
I++ G GF+G L L+ +G V ++ R + ++ D+
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLV-----RNTKRLSKEDQEPVAVVEGDLRDLDS 55
Query: 174 VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 232
+ + VD + HL A + + +V GT N+L AK G F+ S+
Sbjct: 56 LSDAVQGVDVVIHL---AGAPRDTRDF---CEVDVEGTRNVLEAAKEAGVKHFIFISSLG 109
Query: 233 VYGDP 237
YGD
Sbjct: 110 AYGDL 114
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 83/359 (23%), Positives = 133/359 (37%), Gaps = 81/359 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFT-----GRKENVMHHFGNPNFELIRH 171
+V GG+GF+G HLV++L+ RG+ +V V D T V H G +L
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSSGRVQFHTG----DLTDP 56
Query: 172 DVVEPLLLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLT 228
+E E + ++H ASP H N K NV GT N++ ++ G + + T
Sbjct: 57 QDLEKAFNEKGPNVVFHT---ASPDH-GSNDDLYYKVNVQGTRNVIEACRKCGVKKLVYT 112
Query: 229 STSEVY--GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG----VEVR 282
S++ V G + E+ P + Y+E K AE L + + +R
Sbjct: 113 SSASVVFNGQDI-INGDESL---PYPDKHQDAYNETKALAEKLVLKANDPESGLLTCALR 168
Query: 283 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG------ 336
A IF GP D ++V + A + GDG F +V ++
Sbjct: 169 PAGIF---GPG----DRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAAD 221
Query: 337 -LMRLMEGEHVG------------PF---------NLGNPGE-------FTMLELAQVVQ 367
L+ E V F LG L LA +++
Sbjct: 222 ALLSSSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLE 281
Query: 368 ETIDPNAKIEFRPNTEDDPHK-------RKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419
T P + R +I +AK+ LG+ P V+L +G+ + ++ F
Sbjct: 282 WTCKV-----LGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 51/258 (19%), Positives = 85/258 (32%), Gaps = 36/258 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I++TGG GF+G L RL RG V + T + D L
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTI----LTRSPPPGANTKWEGYKPWAGED--ADSL 54
Query: 179 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPL 238
D + +LA ++ K + + R+ +T +
Sbjct: 55 EGADAVINLA-GEPIADKRWTE--ERKQEIRDS--------RI------DTTRLLVEAIA 97
Query: 239 QHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV---RIARIFNTYGPRMC 295
QK + + + +G ++ + T E A + A+ G R+
Sbjct: 98 AAEQKPKVFISASAVGYYGPSEDREYTEEDSPAGDDFLAELCRDWEEAAQAAEDLGTRVV 157
Query: 296 I-DDGRVVSNFVAQALRK-EPLTVY------GDGKQTRSFQFVSDLVEGLMRLMEGEHV- 346
+ G V+ AL K G G+Q S+ + DLV+ ++ +E V
Sbjct: 158 LLRTGIVLGP-KGGALAKMLLPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASVS 216
Query: 347 GPFNLGNPGEFTMLELAQ 364
GP N P E A+
Sbjct: 217 GPVNATAPEPVRNKEFAK 234
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV--IVVDNFFTGRKENVMHHFGN-----PNFELIRHDV 173
VTG +GFV SH+V++L+ RG V V D K ++H + EL D+
Sbjct: 3 VTGASGFVASHVVEQLLERGYKVRATVRD----PSKVKKVNHLLDLDAKPGRLELAVADL 58
Query: 174 VEPLLLE-----VDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGA--RF 225
+ + ++H+ A+PV + +P + IK + GTLN L A + RF
Sbjct: 59 TDEQSFDEVIKGCAGVFHV---ATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRF 115
Query: 226 LLTST 230
+LTS+
Sbjct: 116 VLTSS 120
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 53/185 (28%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
++VTGG+G +G + L +RG V+VV R++ V+H+ + L
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----RRDVVVHNAAIL-----DDGRLIDL 50
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK-----RVGARFLLTSTSE 232
+ I+ NVVGT +L A+ + RF+L S+
Sbjct: 51 TGS------------------RIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNT 289
G Y K + L + G G+
Sbjct: 93 GLFG---------APGLGG-------YAASKAALDGLAQQWASEGWGNGLPATAVACGTW 136
Query: 290 YGPRM 294
G M
Sbjct: 137 AGSGM 141
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 45/212 (21%), Positives = 79/212 (37%), Gaps = 30/212 (14%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDS---VIVVDNFFTGRKENVMHHFGNPNF-ELIRHDV-- 173
+VTGG GF+G H++ L+ R + + V+D F + I D+
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62
Query: 174 VEPLLLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-TS 229
+ L V + H A V N + + NV GT +L + + L+ TS
Sbjct: 63 LSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVYTS 121
Query: 230 TSEV-----YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH----RGAGVE 280
+ EV G P+ + ++T + + + Y K AE + ++ + + G
Sbjct: 122 SIEVAGPNFKGRPIFNGVEDTPYEDTSTPP----YASSKLLAENIVLNANGAPLKQGGYL 177
Query: 281 VRIA-RIFNTYGPRMCIDDGRVVSNFVAQALR 311
V A R YG + ++ L
Sbjct: 178 VTCALRPMYIYG-----EGSHFLTEIFDFLLT 204
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 46/208 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--------DNFFTGRKENVMHHFGN------ 163
+++TG GF+G++L+ L+ R + + + +N+ + N
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 164 -PNFELIRHDVVEPLL-----------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 211
+++ D+ +P L EVD I H A+ V++ + + NV+GT
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPANVLGT 117
Query: 212 LNMLGLA-KRVGARFLLTSTSEVYGDPLQHPQKETYWGN--VNPIGVRSCYDEGKRTAET 268
+L LA ST V+ + + + + G+ + Y + K AE
Sbjct: 118 KELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWVAE- 176
Query: 269 LTMDYHRGAGVEVRIARIFNTYGPRMCI 296
++ R G + I
Sbjct: 177 -------------KLLREAANRGLPVAI 191
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 65/257 (25%), Positives = 91/257 (35%), Gaps = 32/257 (12%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG AG +G L RL A VI VD R P E +R D+ +P
Sbjct: 1 ILVTGAAGGLGRLLARRL-AASPRVIGVDGLDRRRPPGSP-----PKVEYVRLDIRDPAA 54
Query: 179 L------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
E D + HLA P + + + NV GT N+L G R ++TS+
Sbjct: 55 ADVFREREADAVVHLAFILDPPR---DGAERHRINVDGTQNVLDACAAAGVPRVVVTSSV 111
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTY 290
VYG +P T + Y K E L ++ R + V + R
Sbjct: 112 AVYGAHPDNPAPLTEDAPLRGSP-EFAYSRDKAEVEQLLAEFRRRHPELNVTVLRPATIL 170
Query: 291 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS-FQFV--SDLVEGLMRLMEGEHVG 347
GP N L L V G FQF+ D+ L+ + G
Sbjct: 171 GPGT--------RNTTRDFLSPRRLPVPGG---FDPPFQFLHEDDVARALVLAVRAGATG 219
Query: 348 PFNLGNPGEFTMLELAQ 364
FN+ G + +
Sbjct: 220 IFNVAGDGPVPLSLVLA 236
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 23/125 (18%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
++++VTG GFVGS +V L+ +G+ V +V T + N+ + E++ D+
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRP---TSDRRNL----EGLDVEIVEGDLR 53
Query: 175 EPLLLE-----VDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAKRVGA-RF 225
+P L ++H+A Y+ +P + NV GT N+L A G R
Sbjct: 54 DPASLRKAVAGCRALFHVA-----ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERV 108
Query: 226 LLTST 230
+ TS+
Sbjct: 109 VYTSS 113
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV 146
+I+VTG GFVG +V L+ARG V
Sbjct: 2 KILVTGATGFVGGAVVRELLARGHEVRAA 30
|
Length = 275 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 56/268 (20%), Positives = 87/268 (32%), Gaps = 55/268 (20%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP- 176
+IV+TGG GF+G L RL A G V+V+ R+ E+I D +
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVVL-----SRRPGK----AEGLAEVITWDGLSLG 51
Query: 177 --LLLEVDQIYHLACPASPV-HYKFNPV--KTIKTNVVGTLNMLGLA-KRVGAR---FLL 227
L D + +LA P+ ++ K I ++ + + +L A A +
Sbjct: 52 PWELPGADAVINLA--GEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAPPKVLIS 109
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD--EGKRTAETLTMDYHRGAGVEVRIAR 285
S YG E + C + + A L G V I R
Sbjct: 110 ASAVGYYGHSGDEVLTENSPSGKD-FLAEVCKAWEKAAQPASEL--------GTRVVILR 160
Query: 286 IFNTYGPRMCIDDGRVVSNF--VAQALRKEPLTVYG------DGKQTRSFQFVSDLVEGL 337
G V+ + G G+Q S+ + DLV +
Sbjct: 161 T------------GVVLGPDGGALPKML--LPFRLGLGGPLGSGRQWMSWIHIDDLVRLI 206
Query: 338 MRLMEGEHV-GPFNLGNPGEFTMLELAQ 364
+E + GP N P T E +
Sbjct: 207 EFAIENPDLSGPVNAVAPNPVTNAEFTK 234
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 59/272 (21%), Positives = 98/272 (36%), Gaps = 50/272 (18%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN-------FELIR 170
+ V G GF+G ++V+RL RG VIV + F+L
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIV---PYRCEAYARRLLVMGDLGQVLFVEFDLRD 58
Query: 171 HDVVEPLLLEVDQIYHLACPASPV-HYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLT 228
+ + L D + +L ++ F V +V G + AK G R +
Sbjct: 59 DESIRKALEGSDVVINLVGRLYETKNFSFEDV-----HVEGPERLAKAAKEAGVERLIHI 113
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S G P K Y RS K E + A + VR + +F
Sbjct: 114 SA---LGADANSPSK--YL--------RS-----KAEGEEAVREAFPEATI-VRPSVVF- 153
Query: 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ--FVSDLVEGLMRLMEGEHV 346
G + R ++ F A+ L P G QT+ FQ +V D+ E + R ++
Sbjct: 154 --GR-----EDRFLNRF-AKLLAFLPFPPLIGGGQTK-FQPVYVGDVAEAIARALKDPET 204
Query: 347 GP--FNLGNPGEFTMLELAQVVQETIDPNAKI 376
+ L P +T+ EL ++++ ++
Sbjct: 205 EGKTYELVGPKVYTLAELVELLRRLGGRKRRV 236
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 38/249 (15%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV- 173
K +++TGG G G+ ++ R + I + + +++++ + N + DV
Sbjct: 3 KDKILLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDMRKKYNNSKLKFYIGDVR 62
Query: 174 ----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML--GLAKRVGARFLL 227
+ VD IYH A +F+P++ +KTNV+GT N+L +A V L
Sbjct: 63 DYRSILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCL 122
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ VY +N +G+ E A++ +D + R
Sbjct: 123 STDKAVY--------------PINAMGISKAMMEKVMVAKSRNVDSSKTVICGTR----- 163
Query: 288 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG 347
YG M G V+ FV +PLT+ D TR + D V+ ++
Sbjct: 164 --YGNVMA-SRGSVIPLFVDLIKAGKPLTI-TDPNMTRFMMTLEDAVDLVLY-------- 211
Query: 348 PFNLGNPGE 356
F GN G+
Sbjct: 212 AFEHGNNGD 220
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 102 VNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK--ENVMH 159
+N GGK+ + VTG +G++ S +V L+ RG +V T RK E+++
Sbjct: 1 MNGGGKL----------VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLA 50
Query: 160 HFG-NPNFELIRHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKT--IKTNVVGT 211
G +L + D++E E D ++H ASPV + +T I + GT
Sbjct: 51 LDGAKERLKLFKADLLEESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGT 107
Query: 212 LNMLGLAKRVGA--RFLLTSTS 231
+N+L K + R +LTS++
Sbjct: 108 INVLNTCKETPSVKRVILTSST 129
|
Length = 322 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 53/160 (33%)
Query: 118 RIVVTGGAGFVGSHLVDRLI------------ARGDS----------VIVVDNFFTGRKE 155
+++TG GF+G L+++L+ RG S ++ F GR
Sbjct: 2 SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRNL 61
Query: 156 NVMHHFGNPNFE----LIRHDVVEP-----------LLLEVDQIYHLACPASPVHYKFNP 200
N P FE I D+ EP L+ EV+ I H A A+ F+
Sbjct: 62 N-------PLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--AT---VTFDE 109
Query: 201 --VKTIKTNVVGTLNMLGLAKRV--GARFLLTSTSEVYGD 236
+ + NV+GTL +L LAKR F+ ST+ V GD
Sbjct: 110 RLDEALSINVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 26/143 (18%)
Query: 299 GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE-- 356
G ++ F QA PLTVYG G QTR F + D V R +E + N PGE
Sbjct: 283 GTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTV----RCIE---IAIANPAKPGEFR 335
Query: 357 --------FTMLELAQVVQET-----IDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWE 403
F++ ELA++V + +D P E + H ++ E LG E
Sbjct: 336 VFNQFTEQFSVNELAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLCE-LGLE 394
Query: 404 PKV---SLRKGLPKMVKDFRQRI 423
P + SL L ++ R+
Sbjct: 395 PHLLSDSLLDSLLNFAVKYKDRV 417
|
Length = 442 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK 154
I+VTGGAGF+GS++V L +G ++VVDN G K
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38
|
Length = 308 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVI 144
+++ VTG GF+GS +V L+A G V+
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAAGHEVV 28
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 21/135 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIV---VDNFFTGRKENVMHHFGNPNFELIRHDVV 174
R VTGG GF+G LV RL+ R V V R E + ++G + D+
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLT 61
Query: 175 EPLL----------LEVDQIYHLACPASPVHYKFNP--VKTIKTNVVGTLNMLGLAKRVG 222
EP L ++D + HLA Y NV GT N++ LA+R+
Sbjct: 62 EPGLGLSEADIAELGDIDHVVHLAAI-----YDLTADEEAQRAANVDGTRNVVELAERLQ 116
Query: 223 AR-FLLTSTSEVYGD 236
A F S+ V GD
Sbjct: 117 AATFHHVSSIAVAGD 131
|
Length = 657 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVV 146
I++TGG G +G L RL G V ++
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTIL 28
|
Length = 297 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.98 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.98 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.97 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.97 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.97 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.97 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.97 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.95 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.95 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.95 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.93 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.92 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.91 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.88 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.88 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.85 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.85 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.85 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.83 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.83 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.82 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.82 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.82 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.81 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.81 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.8 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.8 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.8 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.79 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.78 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.78 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.77 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.77 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.76 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.76 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.76 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.76 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.76 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.76 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.76 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.76 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.75 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.75 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.75 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.75 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.74 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.74 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.73 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.73 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.73 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.73 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.73 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.72 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.72 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.72 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.72 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.72 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.72 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.71 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.71 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.71 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.71 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.7 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.7 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.7 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.7 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.7 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.7 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.69 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.69 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.69 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.69 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.69 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.69 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.68 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.67 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.67 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.67 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.67 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.67 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.67 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.67 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.67 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.66 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.66 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.66 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.66 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.66 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.66 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.65 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.65 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.64 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.64 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.64 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.64 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.61 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.61 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.61 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.61 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.61 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.61 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.6 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.59 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.59 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.58 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.58 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.58 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.58 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.57 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.57 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.57 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.55 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.55 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.53 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.52 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.52 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.51 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.51 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.51 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.5 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.5 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.5 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.48 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.48 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.46 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.46 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.44 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.42 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.42 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.4 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.39 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.39 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.36 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.36 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.34 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.33 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.31 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.29 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.29 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.27 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.24 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.13 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.12 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.05 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.04 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.03 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.88 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.87 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.82 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.79 | |
| PLN00106 | 323 | malate dehydrogenase | 98.76 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.62 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.62 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.57 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.5 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.48 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.19 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.19 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.17 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.17 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.16 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.06 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.88 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.86 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.76 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.74 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.73 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.69 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.69 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.63 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.61 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.61 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.59 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.54 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.53 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.48 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.47 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.45 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.43 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.42 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.4 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.34 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.33 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.32 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.28 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.28 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.22 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.18 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.17 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.17 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.16 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.11 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.06 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.02 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.98 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.97 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.97 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.97 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.96 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.93 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.93 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.92 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.89 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.88 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.87 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.86 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.8 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.8 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.78 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.77 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.76 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.72 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.7 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.6 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.57 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.56 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.54 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.53 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.5 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.49 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.49 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.48 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.46 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.4 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.39 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.39 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.39 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.35 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.35 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.26 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.18 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.17 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.15 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.14 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.13 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.1 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.05 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.05 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.04 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.97 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.96 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.95 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.95 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.93 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.91 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 95.88 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.83 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.8 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.79 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.77 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 95.75 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.74 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.72 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.64 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.61 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.6 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.56 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.55 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.5 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.49 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.46 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.4 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.4 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.39 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.39 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.37 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.37 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.35 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.35 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 95.33 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.32 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.27 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.15 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.12 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.11 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.05 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.04 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.04 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.97 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.95 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.9 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.89 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.82 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 94.8 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 94.79 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.75 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.7 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.64 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.64 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.56 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 94.5 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 94.49 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.45 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.44 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.4 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.32 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 94.31 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 94.29 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.19 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.16 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.11 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 94.1 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 94.1 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.04 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.01 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.89 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 93.86 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 93.86 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.83 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 93.81 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.78 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 93.78 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.75 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 93.66 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.66 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 93.64 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.55 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 93.54 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.54 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 93.37 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.37 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 93.34 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.29 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.23 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 93.19 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.19 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 93.13 | |
| PLN02712 | 667 | arogenate dehydrogenase | 93.13 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 93.13 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 93.12 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 93.07 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 93.02 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 93.02 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 92.99 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 92.94 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 92.88 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 92.85 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 92.84 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 92.83 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 92.82 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 92.81 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 92.79 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 92.77 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 92.63 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 92.61 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 92.61 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 92.58 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 92.57 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 92.41 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.38 |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=532.81 Aligned_cols=430 Identities=85% Similarity=1.301 Sum_probs=351.9
Q ss_pred CCccccccCCC-CCCCCCCCCCCCCCCCCCCcchhhHHHhhhhHHHHHHHHHHHHHhhhccCCCCCCCCC-CCCCCcccC
Q 013467 1 MGSELIYRGHD-SQLATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIPTSYPASYG-GARGHVAIS 78 (442)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (442)
|+|||+||+++ .++.++.|+|||.|||.|+||+++|+++|||++|+++|+++++.||++.|++.++++. ......+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (442)
T PLN02206 1 MASELINRRHEETQPTADAYYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTIFPSSSQPSPYSVDPLSGYGI 80 (442)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcCCCCcccccccccccc
Confidence 99999999995 4777999999999999999999999999999999999999999999998776443331 000000000
Q ss_pred CCccccchhhhhhccCCCc-c-ccccccCCCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc
Q 013467 79 DSLSYYPVETYQRAYNPRV-G-FGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN 156 (442)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~ 156 (442)
+..... ...++....++. + .......+++|...+.+.|+|||||||||||++|+++|+++|++|++++|....+.+.
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~ 159 (442)
T PLN02206 81 RPDESY-VPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKEN 159 (442)
T ss_pred cccccc-cccccceecccccccccccccCCcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhh
Confidence 000000 000111111111 0 1112346778888888999999999999999999999999999999998865444443
Q ss_pred cccccCCCceeEEeccccccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 157 VMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 157 ~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
....+...+++++++|+.++.+.++|+|||+|+...+..+..++...+++|+.++.+|+++|++.+++|||+||..+|+.
T Consensus 160 ~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 160 VMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239 (442)
T ss_pred hhhhccCCceEEEECCccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence 33333456789999999999889999999999976655555678889999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
....+..|+.|...+|..+.+.|+.+|.++|.+++.+.+..+++++++||+++|||+.+...+.++..++..++.++++.
T Consensus 240 ~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~ 319 (442)
T PLN02206 240 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 319 (442)
T ss_pred CCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcE
Confidence 77778888877655677677899999999999999998888999999999999999875555677888888899999999
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHH
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRA 396 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 396 (442)
+++++++.++|+|++|++++++.+++++..|+||+++++.+++.|+++.+.+.++.+..+.+.+....+.....+|++|+
T Consensus 320 i~g~G~~~rdfi~V~Dva~ai~~a~e~~~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa 399 (442)
T PLN02206 320 VYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKA 399 (442)
T ss_pred EeCCCCEEEeEEeHHHHHHHHHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHH
Confidence 99999999999999999999999998877789999999999999999999999998888877766555666778999999
Q ss_pred HHhhCCCcccCHHHHHHHHHHHHHHHhhccccccC
Q 013467 397 KELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGG 431 (442)
Q Consensus 397 ~~~LG~~p~~~l~e~l~~~~~~~~~~~~~~~~~~~ 431 (442)
+++|||+|+++|+|+|+++++||+++++.+.+++.
T Consensus 400 ~~~LGw~P~~~l~egl~~~~~~~~~~~~~~~~~~~ 434 (442)
T PLN02206 400 KELLGWEPKVSLRQGLPLMVKDFRQRVFGDQKEGS 434 (442)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999999999999877666443
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=511.37 Aligned_cols=419 Identities=71% Similarity=1.166 Sum_probs=342.6
Q ss_pred ccccCCCC-C-CCCCCCCCCCCCCCCCCcchhhHHHhhhhHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccc--CCC
Q 013467 5 LIYRGHDS-Q-LATDSYSPKPIKPWFAVTQPIRYMLREQRLVFVLVGIAIATLFFTVIPTSYPASYGGARGHVAI--SDS 80 (442)
Q Consensus 5 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 80 (442)
.+||+++. + ..++.|+|||+++++|+||+++|+++|||++|+++|+++++.||++.|+++++++...+..... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
T PLN02166 10 VNHRRDEEIPTSQSSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSLSRLGPAESTSLITRSVSIA 89 (436)
T ss_pred ccccCCCCCCccccCCCCCCCCCCCccccchHHHHHHhhhHHHHHHHHHHHHHHHhhCCccccCCccccccccccccccc
Confidence 34555533 3 3488999997666699999999999999999999999999999998888765544321111111 011
Q ss_pred ccccch-hhhhhccCCCccccccccCCCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc
Q 013467 81 LSYYPV-ETYQRAYNPRVGFGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH 159 (442)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~ 159 (442)
....+. ..+.+ .. +..+..+++|...+++.|+|+|||||||||++|+++|+++|++|++++|...........
T Consensus 90 ~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~ 163 (436)
T PLN02166 90 VTDSPPSSSTFN----SS--GGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVH 163 (436)
T ss_pred cccCccchhhcc----cc--ccccccCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhh
Confidence 111100 00100 00 112456789999999999999999999999999999999999999999864433333322
Q ss_pred ccCCCceeEEeccccccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCC
Q 013467 160 HFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 160 ~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~ 239 (442)
.....+++++..|+.+..+.++|+|||+|+...+.....++...++.|+.|+.+|+++|++.+++|||+||..|||....
T Consensus 164 ~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~ 243 (436)
T PLN02166 164 LFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLE 243 (436)
T ss_pred hccCCceEEEECccccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCC
Confidence 22345788999999998888999999999976655555578889999999999999999999899999999999998777
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
.+.+|+.|...++..+.+.|+.+|..+|.+++.+.+..+++++++||+++|||+++...+.++..++..++.++++.+++
T Consensus 244 ~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g 323 (436)
T PLN02166 244 HPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYG 323 (436)
T ss_pred CCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeC
Confidence 78888876655677777899999999999999998888999999999999999876555678889999999999999899
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHh
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKEL 399 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 399 (442)
++++.++|+||+|++++++.+++++..|+||+++++.+|+.|+++.+.+.+|.+..+.+.+....+.....+|++|++++
T Consensus 324 ~g~~~rdfi~V~Dva~ai~~~~~~~~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~ 403 (436)
T PLN02166 324 DGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKEL 403 (436)
T ss_pred CCCeEEeeEEHHHHHHHHHHHHhcCCCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHH
Confidence 99999999999999999999998777789999999999999999999999998888887776666666778999999999
Q ss_pred hCCCcccCHHHHHHHHHHHHHHHhhccccc
Q 013467 400 LGWEPKVSLRKGLPKMVKDFRQRIFGDHKE 429 (442)
Q Consensus 400 LG~~p~~~l~e~l~~~~~~~~~~~~~~~~~ 429 (442)
|||+|+++++++|+++++||+.+.++++++
T Consensus 404 LGw~P~~sl~egl~~~i~~~~~~~~~~~~~ 433 (436)
T PLN02166 404 LNWEPKISLREGLPLMVSDFRNRILNEDEG 433 (436)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999999999998887553
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=394.38 Aligned_cols=316 Identities=76% Similarity=1.235 Sum_probs=307.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
.+++|+||||.||||+|||+.|..+||+|+++|....+++..+.+......++++..|+..+.+.++|.|||+|++.++.
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapasp~ 105 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPASPP 105 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCCCc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~ 274 (442)
++..++.+.+..|+.++.+++..|++.++||++.||+.|||++..+|..|+.|.+..|.++..+|+..|..+|.++.++.
T Consensus 106 ~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y~ 185 (350)
T KOG1429|consen 106 HYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYH 185 (350)
T ss_pred ccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCC
Q 013467 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~ 354 (442)
++.|+.+.|.|+.++|||+++.++++++..|+.+.+++.++.++|+|.+.++|+||+|+.++++++++++..+.||++++
T Consensus 186 k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~~pvNiGnp 265 (350)
T KOG1429|consen 186 KQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYRGPVNIGNP 265 (350)
T ss_pred cccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCcCCcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhcccccc
Q 013467 355 GEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEG 430 (442)
Q Consensus 355 ~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~~~~~~ 430 (442)
+.+|+.||++++.+..+....+++....++++.....|++++++.|||+|+++|+|+|..++.|+++++..+.+.+
T Consensus 266 ~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~~~~~g 341 (350)
T KOG1429|consen 266 GEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIAREKKKG 341 (350)
T ss_pred cceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877644
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=341.90 Aligned_cols=296 Identities=30% Similarity=0.503 Sum_probs=262.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc-------CCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL-------LEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~A~ 189 (442)
|+||||||.||||+|++.+|++.|++|+++|+...+..+.+... .+.|+++|+.|..+ .++|.|||+||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 58999999999999999999999999999999877776665432 26899999988643 25999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
.....+...+|-.+++.|+.||.+|+++|++.|+ +|||.||+.+||.+..-|+.|+ .+..|.++||+||++.|+
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPYG~sKlm~E~ 151 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPYGRSKLMSEE 151 (329)
T ss_pred ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcchhHHHHHHH
Confidence 9988888899999999999999999999999998 9999999999999999999999 677788999999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCc-------cCCCchHHHHHHHHHcCCC-cEEec------CCceeEeccCHHHHH
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMC-------IDDGRVVSNFVAQALRKEP-LTVYG------DGKQTRSFQFVSDLV 334 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~v~v~Dva 334 (442)
+++++.+..+++++++|-+|+.|.... ......++..++.++..++ +.++| ||...+++|||.|+|
T Consensus 152 iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA 231 (329)
T COG1087 152 ILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLA 231 (329)
T ss_pred HHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHH
Confidence 999999999999999999999986432 1234567777776665544 66776 567889999999999
Q ss_pred HHHHHHHcCC---CC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCccc-CHH
Q 013467 335 EGLMRLMEGE---HV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV-SLR 409 (442)
Q Consensus 335 ~ai~~~l~~~---~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l~ 409 (442)
++++.+++.- .. .+||+++|+.+|..|+++.++++.|.++++++.+..+.++..++.|++|+++.|||+|++ +++
T Consensus 232 ~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~L~ 311 (329)
T COG1087 232 DAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLE 311 (329)
T ss_pred HHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccCCHH
Confidence 9999998632 22 399999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHH
Q 013467 410 KGLPKMVKDFRQ 421 (442)
Q Consensus 410 e~l~~~~~~~~~ 421 (442)
+.++..+.|..+
T Consensus 312 ~ii~~aw~W~~~ 323 (329)
T COG1087 312 DIIKDAWDWHQQ 323 (329)
T ss_pred HHHHHHHHHhhh
Confidence 999999999985
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=337.47 Aligned_cols=301 Identities=30% Similarity=0.491 Sum_probs=269.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCC-CCccccccccCCCceeEEeccccccc-----cC--CCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFT-GRKENVMHHFGNPNFELIRHDVVEPL-----LL--EVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih 186 (442)
|++|||||.||||+.+++++++... +|++++.-.- +..+.+......++..|+++|+.+.. +. ++|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5899999999999999999999864 5788886433 33445555556789999999998753 23 5899999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCC--CCCCCCCCCCCCCCCCChhHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQH--PQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~--~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
+|+-...+..-.++..++++|+.||.+||+++++... ||+++||..|||+.... .++|+ +|..|.++|..|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCcchh
Confidence 9999888888888999999999999999999999873 99999999999976553 57777 799999999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
|+.+..+++.+.+.+|++++|.||++-|||.+ ....+++.++.+++.|.+++++|+|.+.++|+||+|-|+++-.+++
T Consensus 156 KAasD~lVray~~TYglp~~ItrcSNNYGPyq--fpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 156 KAASDLLVRAYVRTYGLPATITRCSNNYGPYQ--FPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhHHHHHHHHHHHcCCceEEecCCCCcCCCc--CchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999987 4577899999999999999999999999999999999999999999
Q ss_pred CCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCc-----eEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHH
Q 013467 343 GEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-----IEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416 (442)
Q Consensus 343 ~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~ 416 (442)
+...| +|||+++...+-.|+++.|.+.+|.... +.++...+.-..++.+|.+|++++|||.|+++++++|++++
T Consensus 234 kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv 313 (340)
T COG1088 234 KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETGLRKTV 313 (340)
T ss_pred cCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHHHHHHHH
Confidence 98888 9999999999999999999999998877 88888777777788999999999999999999999999999
Q ss_pred HHHHHHhh
Q 013467 417 KDFRQRIF 424 (442)
Q Consensus 417 ~~~~~~~~ 424 (442)
+||.++.-
T Consensus 314 ~WY~~N~~ 321 (340)
T COG1088 314 DWYLDNEW 321 (340)
T ss_pred HHHHhchH
Confidence 99998653
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=358.41 Aligned_cols=306 Identities=25% Similarity=0.371 Sum_probs=246.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc------cCCCceeEEecccccc-----ccCC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH------FGNPNFELIRHDVVEP-----LLLE 180 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~------~~~~~v~~~~~D~~~~-----~~~~ 180 (442)
...++|+|+|||||||||++|+++|+++|++|++++|............ ....++.++.+|+.+. .+.+
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 4456789999999999999999999999999999998644322211110 0123578899998764 3568
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+|+|||+|+.........++...+++|+.|+.+|+++|++.++ +|||+||..+||...+.+..|+ .+..|.+.|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y 165 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSPY 165 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCChh
Confidence 9999999997554444456777899999999999999999997 9999999999997666666665 344566789
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
+.+|..+|.+++.+.+..+++++++||+++|||+...+. ..+++.++..++.++++.+++++.+.++|+|++|+|+++
T Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~ 245 (348)
T PRK15181 166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQAN 245 (348)
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence 999999999999988888999999999999999864322 357888888888899999899999999999999999999
Q ss_pred HHHHcCC----CCccEEecCCCccCHHHHHHHHHHHhCCC------CceEeCCCCCCCCCccccChHHHHHhhCCCcccC
Q 013467 338 MRLMEGE----HVGPFNLGNPGEFTMLELAQVVQETIDPN------AKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVS 407 (442)
Q Consensus 338 ~~~l~~~----~~g~~~i~~~~~~s~~dl~~~l~~~~g~~------~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~ 407 (442)
++++..+ ..++||+++++.+|+.|+++.+.+.++.. ..+.+.+..........+|++|++++|||.|+++
T Consensus 246 ~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~P~~s 325 (348)
T PRK15181 246 LLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEPEFD 325 (348)
T ss_pred HHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhCCCCCCC
Confidence 9877643 23599999999999999999999998732 1222222233334467889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013467 408 LRKGLPKMVKDFRQR 422 (442)
Q Consensus 408 l~e~l~~~~~~~~~~ 422 (442)
++|+|+++++||+.+
T Consensus 326 l~egl~~~~~w~~~~ 340 (348)
T PRK15181 326 IKEGLKQTLKWYIDK 340 (348)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=337.21 Aligned_cols=312 Identities=28% Similarity=0.426 Sum_probs=238.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccc---cCCCceeEEecccccc-----ccCCCCE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHH---FGNPNFELIRHDVVEP-----LLLEVDQ 183 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~-----~~~~~d~ 183 (442)
+.++|+|||||||||||++|+++|+++ |++|++++|...... .+... ....+++++.+|+.+. .+.++|+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~-~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK-HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh-hhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 345679999999999999999999998 599999998543211 11110 0113688999998764 4567999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCC-----------CC
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNV-----------NP 252 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~-----------~~ 252 (442)
|||+|+...+..+..++...+..|+.++.+++++|++.+++|||+||..+||......+.|+..... .+
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~ 169 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESP 169 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcccccccccccccccccccc
Confidence 9999997655444455666778999999999999998888999999999998654333333321100 00
Q ss_pred ------CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC---------CCchHHHHHHHHHcCCCcEE
Q 013467 253 ------IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID---------DGRVVSNFVAQALRKEPLTV 317 (442)
Q Consensus 253 ------~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 317 (442)
..+.+.|+.+|..+|.+++.+++..+++++++||++||||+.... ...++..++..++.++++.+
T Consensus 170 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 249 (386)
T PLN02427 170 CIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKL 249 (386)
T ss_pred cccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeEE
Confidence 123467999999999999998888899999999999999975310 12356666677888888888
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCCC--Cc-cEEecCC-CccCHHHHHHHHHHHhCCCCc-----eEe--CCC-----
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGEH--VG-PFNLGNP-GEFTMLELAQVVQETIDPNAK-----IEF--RPN----- 381 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~-~~~s~~dl~~~l~~~~g~~~~-----~~~--~~~----- 381 (442)
++++++.++|+||+|+|++++.+++++. .| +||++++ +.+++.|+++.+.+.+|.... ... .+.
T Consensus 250 ~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 329 (386)
T PLN02427 250 VDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFYG 329 (386)
T ss_pred ECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCcccccC
Confidence 8888899999999999999999998763 34 8999987 599999999999999984211 110 110
Q ss_pred -CCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 382 -TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 382 -~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
...+......|.+|++++|||+|+++++++|+++++||++....
T Consensus 330 ~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 330 EGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred ccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 01233456779999999999999999999999999999988765
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=332.96 Aligned_cols=312 Identities=29% Similarity=0.440 Sum_probs=246.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 188 (442)
..+|+|+|||||||||++++++|.++||+|++++|........ ......++.+|+.+. .+.++|+|||+|
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 3567999999999999999999999999999999853211110 011246677787653 356899999999
Q ss_pred ccCCCCc-ccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC----CCCCCCCCCCCCCCCCCChhHHH
Q 013467 189 CPASPVH-YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ----HPQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~----~~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
+...... ...++...+..|+.++.+|+++|++.++ +|||+||..+|+.... .++.|+.. .+..+.+.|+.+
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Yg~s 170 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAYGLE 170 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHHHHH
Confidence 8653222 2234455677899999999999999997 9999999999986432 13445421 255667899999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHc-CCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
|..+|.+++.+++..|++++++||+++|||+..... ..+...++..++. +.++.+++++++.++|+|++|++++++.
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~ 250 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLR 250 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHH
Confidence 999999999998888999999999999999754332 2345677776665 4678888999999999999999999999
Q ss_pred HHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHH
Q 013467 340 LMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 340 ~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~ 419 (442)
+++++..++||+++++.+++.|+++.+.+..|.+.++...+... .......|+++++++|||+|+++++++|.++++||
T Consensus 251 ~~~~~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~ 329 (370)
T PLN02695 251 LTKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE-GVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWI 329 (370)
T ss_pred HHhccCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC-CccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 98876667999999999999999999999999776666554332 22345689999999999999999999999999999
Q ss_pred HHHhhccccccCCCC
Q 013467 420 RQRIFGDHKEGGAGA 434 (442)
Q Consensus 420 ~~~~~~~~~~~~~~~ 434 (442)
+.....+..++.++.
T Consensus 330 ~~~~~~~~~~~~~~~ 344 (370)
T PLN02695 330 KEQIEKEKAEGSDAA 344 (370)
T ss_pred HHHHHhhhccccchh
Confidence 998887776665543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=329.68 Aligned_cols=307 Identities=24% Similarity=0.409 Sum_probs=242.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEecccc-cc-----ccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV-EP-----LLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~~-----~~~~~d~Vih~A 188 (442)
||+|+|||||||||++|+++|+++ |++|++++|.... ........+++++.+|+. +. .+.++|+|||+|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 578999999999999999999987 6999999984321 111122346888999986 32 346899999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCC-CCCC-CCCCChhHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNP-IGVRSCYDEGKRTA 266 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~-~~~~-~~~~~~Y~~sK~~~ 266 (442)
+...+.....++...+++|+.++.+++++|++.+.+|||+||..+||.....++.|+... ...+ ..+.+.|+.+|.++
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~ 156 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLM 156 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHH
Confidence 976555555677888999999999999999998889999999999987655566665321 1111 23456899999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCcc------CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHH
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
|.+++.+++..+++++++||+++|||+... ...+++..++..++.++++.+++++++.++|+|++|++++++.+
T Consensus 157 e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~ 236 (347)
T PRK11908 157 DRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKI 236 (347)
T ss_pred HHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHH
Confidence 999999988889999999999999997532 12457788888888898888888889999999999999999999
Q ss_pred HcCCC----CccEEecCC-CccCHHHHHHHHHHHhCCCCceE-------eC--CCC------CCCCCccccChHHHHHhh
Q 013467 341 MEGEH----VGPFNLGNP-GEFTMLELAQVVQETIDPNAKIE-------FR--PNT------EDDPHKRKPDISRAKELL 400 (442)
Q Consensus 341 l~~~~----~g~~~i~~~-~~~s~~dl~~~l~~~~g~~~~~~-------~~--~~~------~~~~~~~~~d~~k~~~~L 400 (442)
++++. .++||++++ ..+|+.|+++.+.+.++....+. +. +.. .........|++|++++|
T Consensus 237 ~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 316 (347)
T PRK11908 237 IENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQEL 316 (347)
T ss_pred HhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccCChHHHHHHc
Confidence 98763 249999987 58999999999999998543321 11 110 012234567899999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHHhhcc
Q 013467 401 GWEPKVSLRKGLPKMVKDFRQRIFGD 426 (442)
Q Consensus 401 G~~p~~~l~e~l~~~~~~~~~~~~~~ 426 (442)
||+|+++++++|+++++|++++....
T Consensus 317 Gw~p~~~l~~~l~~~~~~~~~~~~~~ 342 (347)
T PRK11908 317 GWAPKTTMDDALRRIFEAYRGHVAEA 342 (347)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776543
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=328.07 Aligned_cols=302 Identities=28% Similarity=0.437 Sum_probs=237.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEE-EeCCCCCCc-cccccccCCCceeEEecccccc-----ccC--CCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIV-VDNFFTGRK-ENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~-l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih 186 (442)
|++|||||||||||+++++.|+++|++|++ ++|...... ...........+.++.+|+.+. .+. ++|+|||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 468999999999999999999999987554 444221111 1111111123577888888764 233 4899999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc---------CC-eEEEeecCccccCCC--CCCCCCCCCCCCCCCC
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---------GA-RFLLTSTSEVYGDPL--QHPQKETYWGNVNPIG 254 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------g~-r~i~iSS~~vy~~~~--~~~~~E~~~~~~~~~~ 254 (442)
+||.........++..++++|+.++.+++++|++. ++ +||++||..+|+... ..+++|+ .+..
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~~ 155 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPYA 155 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCCC
Confidence 99975443333457789999999999999999862 44 899999999998542 3457776 4556
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 334 (442)
+.+.|+.+|.++|.+++.++++.+++++++||+++|||+.. ...++..++.....++++++++++++.++|+||+|++
T Consensus 156 p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~--~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a 233 (355)
T PRK10217 156 PSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHF--PEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA 233 (355)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCC--cccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence 67899999999999999998888999999999999999863 2457778888888888888889999999999999999
Q ss_pred HHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCc------------eEeCCCCCCCCCccccChHHHHHhhC
Q 013467 335 EGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAK------------IEFRPNTEDDPHKRKPDISRAKELLG 401 (442)
Q Consensus 335 ~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~------------~~~~~~~~~~~~~~~~d~~k~~~~LG 401 (442)
+++..+++.+.. ++||+++++.+++.|+++.+.+.++.... +.+.+..+.....+.+|++|++++||
T Consensus 234 ~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 313 (355)
T PRK10217 234 RALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIARELG 313 (355)
T ss_pred HHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHHhcC
Confidence 999999987654 49999999999999999999999874221 11222222334456889999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHhh
Q 013467 402 WEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 402 ~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
|+|+++++|+|+++++||+.+..
T Consensus 314 ~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 314 WLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred CCCcCcHHHHHHHHHHHHHhCHH
Confidence 99999999999999999998855
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=327.84 Aligned_cols=300 Identities=24% Similarity=0.322 Sum_probs=235.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-ccccccc------CCCceeEEecccccc-----ccC--CCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHF------GNPNFELIRHDVVEP-----LLL--EVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~------~~~~v~~~~~D~~~~-----~~~--~~d 182 (442)
|+||||||+||||++++++|+++|++|++++|...... +...... ...++.++.+|+.+. .+. ++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 48999999999999999999999999999998653211 1111100 123578889998775 233 479
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC----eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~----r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
+|||+|+..........+...+++|+.|+.+++++|++.++ +|||+||..+||.....+++|+ .+..+.+.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~ 155 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRSP 155 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCCh
Confidence 99999997554333345667778999999999999998773 7999999999997666667777 56667789
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a 336 (442)
|+.||.++|.+++.+++..++++++.|+.++|||+...+ -...+..++..+..++. ..+++++++.++|+||+|++++
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a 235 (343)
T TIGR01472 156 YAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEA 235 (343)
T ss_pred hHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHH
Confidence 999999999999999888899999999999999974221 12334555556666654 4456889999999999999999
Q ss_pred HHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCce-------------------EeCC--CCCCCCCccccChHH
Q 013467 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI-------------------EFRP--NTEDDPHKRKPDISR 395 (442)
Q Consensus 337 i~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~-------------------~~~~--~~~~~~~~~~~d~~k 395 (442)
++.+++++..+.||+++++.+|+.|+++.+.+.+|.+..+ .+.. ..+.+......|++|
T Consensus 236 ~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 315 (343)
T TIGR01472 236 MWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDATK 315 (343)
T ss_pred HHHHHhcCCCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchhcCCHHH
Confidence 9999987766799999999999999999999999965421 1111 123334455779999
Q ss_pred HHHhhCCCcccCHHHHHHHHHHHHHH
Q 013467 396 AKELLGWEPKVSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 396 ~~~~LG~~p~~~l~e~l~~~~~~~~~ 421 (442)
++++|||+|+++++|+|++++++|++
T Consensus 316 ~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 316 AKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999984
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=323.77 Aligned_cols=307 Identities=23% Similarity=0.307 Sum_probs=240.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-cccccc-----cCCCceeEEeccccccc-----cC--CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHH-----FGNPNFELIRHDVVEPL-----LL--EV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~-----~~~~~v~~~~~D~~~~~-----~~--~~ 181 (442)
++|+||||||+||||++++++|+++|++|++++|...... ...... .....+.++.+|+.+.. +. ++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 84 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKP 84 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCC
Confidence 3568999999999999999999999999999988643211 111111 01235788889987642 22 47
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC------eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA------RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~------r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
|+|||+|+.........++...+++|+.|+.+++++|++.++ +||++||.++||.... +++|+ .+..+
T Consensus 85 d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~p 158 (340)
T PLN02653 85 DEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFHP 158 (340)
T ss_pred CEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCCC
Confidence 999999997554333445677789999999999999998773 7999999999997654 67777 56667
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCCcEE-ecCCceeEeccCHHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTV-YGDGKQTRSFQFVSDL 333 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~Dv 333 (442)
.+.|+.+|.++|.+++.+++..++.++..|+.++|||+...+. ...+..++..+..+.+..+ ++++++.++|+|++|+
T Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~ 238 (340)
T PLN02653 159 RSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDY 238 (340)
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHH
Confidence 7899999999999999998888999999999999999742211 1234444555566765544 4889999999999999
Q ss_pred HHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCC--CceEeCCC--CCCCCCccccChHHHHHhhCCCcccCHH
Q 013467 334 VEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPN--AKIEFRPN--TEDDPHKRKPDISRAKELLGWEPKVSLR 409 (442)
Q Consensus 334 a~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~--~~~~~~~~--~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 409 (442)
|++++.+++.+..+.||+++++.+++.|+++.+.+.+|.+ ..+.+.+. .+.+.....+|++|++++|||+|+++++
T Consensus 239 a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~ 318 (340)
T PLN02653 239 VEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGFE 318 (340)
T ss_pred HHHHHHHHhcCCCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCCCCCCHH
Confidence 9999999988766799999999999999999999999864 23333322 2334455678999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 013467 410 KGLPKMVKDFRQRIFGDH 427 (442)
Q Consensus 410 e~l~~~~~~~~~~~~~~~ 427 (442)
++|+++++||+++...++
T Consensus 319 ~gi~~~~~~~~~~~~~~~ 336 (340)
T PLN02653 319 QLVKMMVDEDLELAKREK 336 (340)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999998877543
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=329.40 Aligned_cols=310 Identities=26% Similarity=0.334 Sum_probs=236.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc------cc----------cc--ccCCCceeEEecccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE------NV----------MH--HFGNPNFELIRHDVV 174 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~------~~----------~~--~~~~~~v~~~~~D~~ 174 (442)
..++|+||||||+||||++|+++|+++|++|++++|......+ .. .. .....+++++.+|+.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~ 123 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC 123 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence 3567899999999999999999999999999999864221110 00 00 001235789999987
Q ss_pred ccc-----cC--CCCEEEEecccCCCCcccCC---hhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCC
Q 013467 175 EPL-----LL--EVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 175 ~~~-----~~--~~d~Vih~A~~~~~~~~~~~---~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~ 242 (442)
+.. +. ++|+|||+|+.........+ ....+++|+.|+.+++++|++.++ +||++||..+||... .++
T Consensus 124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~ 202 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDI 202 (442)
T ss_pred CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCC
Confidence 752 33 58999999976443222222 345678999999999999999884 799999999998643 233
Q ss_pred CCCCC---------CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC------------C---
Q 013467 243 KETYW---------GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID------------D--- 298 (442)
Q Consensus 243 ~E~~~---------~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~------------~--- 298 (442)
+|... ....+..+.+.|+.+|.++|.+++.+++..|++++++||+++|||+.... +
T Consensus 203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~ 282 (442)
T PLN02572 203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVF 282 (442)
T ss_pred cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccch
Confidence 33211 00124556688999999999999999888899999999999999985321 0
Q ss_pred CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-Cc---cEEecCCCccCHHHHHHHHHHH---hC
Q 013467 299 GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG---PFNLGNPGEFTMLELAQVVQET---ID 371 (442)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g---~~~i~~~~~~s~~dl~~~l~~~---~g 371 (442)
..++..++..++.++++.+++++++.++|+||+|++++++.+++++. .| +||+++ +.+++.|+++.+.+. +|
T Consensus 283 ~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i~~~~~~~g 361 (442)
T PLN02572 283 GTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAGEKLG 361 (442)
T ss_pred hhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHHHHHHHhhC
Confidence 24567777788888888889999999999999999999999998653 33 799976 689999999999999 88
Q ss_pred CCCceEeCCCCC--CCCCccccChHHHHHhhCCCccc---CHHHHHHHHHHHHHHHhhc
Q 013467 372 PNAKIEFRPNTE--DDPHKRKPDISRAKELLGWEPKV---SLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 372 ~~~~~~~~~~~~--~~~~~~~~d~~k~~~~LG~~p~~---~l~e~l~~~~~~~~~~~~~ 425 (442)
.+..+.+.+.+. ........|.+|+++ |||+|++ +++++|.++++||+++...
T Consensus 362 ~~~~~~~~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l~~~~~~~~~~~~~ 419 (442)
T PLN02572 362 LDVEVISVPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSLLNFAVKYKDRVDT 419 (442)
T ss_pred CCCCeeeCCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHhhcch
Confidence 777776655332 223355679999975 9999998 8999999999999866543
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=348.00 Aligned_cols=308 Identities=27% Similarity=0.479 Sum_probs=245.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih 186 (442)
.++|+|||||||||||++|+++|+++ |++|++++|....... .....+++++.+|+.+. ++.++|+|||
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViH 388 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hcCCCceEEEeccccCcHHHHHHHhcCCCEEEE
Confidence 45789999999999999999999986 7999999986432111 11234688889998752 3568999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCC-CCCCC-CCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPI-GVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~-~~~~~-~~~~~Y~~sK~ 264 (442)
+||...+..+..++...+++|+.++.+++++|++.+.+|||+||..+||.....+++|+.+. ...+. .+.+.|+.+|.
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~ 468 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQ 468 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHHH
Confidence 99977665555667788999999999999999999889999999999997655677777532 11222 24568999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc------CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
.+|.+++.+++..|++++++||+++|||+... ....++..++..+..++++.+++++++.++|+|++|++++++
T Consensus 469 ~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~ 548 (660)
T PRK08125 469 LLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALF 548 (660)
T ss_pred HHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHH
Confidence 99999999988889999999999999997532 123567888888888888888889999999999999999999
Q ss_pred HHHcCCC---Cc-cEEecCCC-ccCHHHHHHHHHHHhCCCC-ceEeCCCC--------------CCCCCccccChHHHHH
Q 013467 339 RLMEGEH---VG-PFNLGNPG-EFTMLELAQVVQETIDPNA-KIEFRPNT--------------EDDPHKRKPDISRAKE 398 (442)
Q Consensus 339 ~~l~~~~---~g-~~~i~~~~-~~s~~dl~~~l~~~~g~~~-~~~~~~~~--------------~~~~~~~~~d~~k~~~ 398 (442)
.+++++. .| +||+++++ .+++.|+++.+.+.+|... .+...+.. ..+......|++|+++
T Consensus 549 ~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 628 (660)
T PRK08125 549 RIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARR 628 (660)
T ss_pred HHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccCCChHHHHH
Confidence 9998752 24 89999985 7999999999999998532 12111100 0123345679999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
+|||+|+++++++|+++++||++....
T Consensus 629 ~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 629 LLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999877654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=295.38 Aligned_cols=299 Identities=27% Similarity=0.461 Sum_probs=253.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCC-ccccccccCCCceeEEecccccccc-------CCCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGR-KENVMHHFGNPNFELIRHDVVEPLL-------LEVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih 186 (442)
++++||||.||||++.++.+... .+..+.++.-.-.. ...+......++..++++|+.+... .++|.|||
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 58999999999999999999987 35666666432222 2233333456789999999987643 36999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCC-CCCCCCCCCCCCCChhHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQK-ETYWGNVNPIGVRSCYDEGK 263 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~-E~~~~~~~~~~~~~~Y~~sK 263 (442)
.|+.......-.++..+...|+.++..|+++++..| + +|||+||..|||+.++.... |. +...|.+.|+.+|
T Consensus 87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpyAasK 161 (331)
T KOG0747|consen 87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPYAASK 161 (331)
T ss_pred hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCchHHHH
Confidence 999877777667788889999999999999999997 5 89999999999998877666 66 6778889999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
+++|.+++++.+.+|++++++|.++||||++ .....++.|+.....+++.++-|+|.+.++|+||+|+++++..++++
T Consensus 162 aAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q--~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K 239 (331)
T KOG0747|consen 162 AAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQ--YPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK 239 (331)
T ss_pred HHHHHHHHHHhhccCCcEEEEeccCccCCCc--ChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987 44667889998888999999999999999999999999999999999
Q ss_pred CCCc-cEEecCCCccCHHHHHHHHHHHhCCC-------CceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 344 EHVG-PFNLGNPGEFTMLELAQVVQETIDPN-------AKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 344 ~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~-------~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
...| +|||++..+.+..|+++.+.+.+... ..+.+.+..+....++.++.+|++ .|||+|+++|+++|+.+
T Consensus 240 g~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~eGLrkt 318 (331)
T KOG0747|consen 240 GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWEEGLRKT 318 (331)
T ss_pred CCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCCcccCcHHHHHHHH
Confidence 7756 99999999999999999999888752 223344555555566889999999 69999999999999999
Q ss_pred HHHHHHHh
Q 013467 416 VKDFRQRI 423 (442)
Q Consensus 416 ~~~~~~~~ 423 (442)
++||.++-
T Consensus 319 ie~y~~~~ 326 (331)
T KOG0747|consen 319 IEWYTKNF 326 (331)
T ss_pred HHHHHhhh
Confidence 99999876
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=315.35 Aligned_cols=298 Identities=20% Similarity=0.300 Sum_probs=224.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
++|+|+||||+||||++++++|+++|++|++++|............+ ...++.++.+|+.+. .+.++|+|||+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 46789999999999999999999999999999986432111111111 113577888888764 45689999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecC-ccccCCCC---CCCCCCCCCCCC-CCCCCChhHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS-EVYGDPLQ---HPQKETYWGNVN-PIGVRSCYDE 261 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~-~vy~~~~~---~~~~E~~~~~~~-~~~~~~~Y~~ 261 (442)
|+.. ..++...+++|+.++.+++++|++.++ +||++||. .+||.... .+++|++|.+.. +..+.+.|+.
T Consensus 89 A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~ 163 (342)
T PLN02214 89 ASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCY 163 (342)
T ss_pred cCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHH
Confidence 9863 235678899999999999999999997 89999996 58875432 357888764332 3446678999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l 341 (442)
+|..+|.+++.+.++.|++++++||++||||+........+..++ ..+.+.... ++ ++.++|+||+|+|++++.++
T Consensus 164 sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~~--~~~~~~i~V~Dva~a~~~al 239 (342)
T PLN02214 164 GKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-YA--NLTQAYVDVRDVALAHVLVY 239 (342)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-CC--CCCcCeeEHHHHHHHHHHHH
Confidence 999999999999888899999999999999986432222333333 344444332 33 45789999999999999999
Q ss_pred cCCCC-ccEEecCCCccCHHHHHHHHHHHhCC-CCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHH
Q 013467 342 EGEHV-GPFNLGNPGEFTMLELAQVVQETIDP-NAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 342 ~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~ 419 (442)
+++.. |.||+++ ..+++.|+++.+.+.++. +......+..........+|++|+++ |||+|+ +++|+|+++++||
T Consensus 240 ~~~~~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-LG~~p~-~lee~i~~~~~~~ 316 (342)
T PLN02214 240 EAPSASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKD-LGLEFT-STKQSLYDTVKSL 316 (342)
T ss_pred hCcccCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHH-cCCccc-CHHHHHHHHHHHH
Confidence 98754 6999986 578999999999999863 22222211122233445689999985 999995 9999999999999
Q ss_pred HHHhh
Q 013467 420 RQRIF 424 (442)
Q Consensus 420 ~~~~~ 424 (442)
++...
T Consensus 317 ~~~~~ 321 (342)
T PLN02214 317 QEKGH 321 (342)
T ss_pred HHcCC
Confidence 87654
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=316.90 Aligned_cols=300 Identities=27% Similarity=0.458 Sum_probs=232.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCC-CCccccccccCCCceeEEecccccc-----ccC--CCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFT-GRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~ 187 (442)
|+||||||+||||++++++|+++|++ |+++++... ..............+.++.+|+.+. .+. ++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 58999999999999999999999975 555554321 1111111111123567788888775 232 48999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc---------CC-eEEEeecCccccCCCC----------CCCCCCCC
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---------GA-RFLLTSTSEVYGDPLQ----------HPQKETYW 247 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------g~-r~i~iSS~~vy~~~~~----------~~~~E~~~ 247 (442)
|+.........++..++++|+.|+.+++++|++. ++ +||++||..+|+.... .+++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~-- 158 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET-- 158 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence 9975433333456788999999999999999874 44 8999999999985321 134555
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+..+.+.|+.+|.++|.+++.+++..|++++++|++++|||+.. ...++..++..+..++.+.+++++++.++|
T Consensus 159 ---~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 159 ---TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred ---CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcC--ccchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 466677899999999999999998888999999999999999852 245677777788888888888999999999
Q ss_pred cCHHHHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCc--------eEeCCCCCCCCCccccChHHHHH
Q 013467 328 QFVSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAK--------IEFRPNTEDDPHKRKPDISRAKE 398 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~--------~~~~~~~~~~~~~~~~d~~k~~~ 398 (442)
+|++|+++++..+++.+.. +.||+++++.+++.|+++.+.+.+|.... +.+.+..+.......+|++|+++
T Consensus 234 v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 313 (352)
T PRK10084 234 LYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISR 313 (352)
T ss_pred EEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHHHHH
Confidence 9999999999999987644 59999999999999999999999985321 11111122233455789999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
+|||+|+++++++|+++++||+++.
T Consensus 314 ~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 314 ELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred HcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 9999999999999999999999863
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=340.23 Aligned_cols=303 Identities=27% Similarity=0.435 Sum_probs=242.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCC-ccccccccCCCceeEEeccccccc-------cCCCCEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGR-KENVMHHFGNPNFELIRHDVVEPL-------LLEVDQI 184 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~-------~~~~d~V 184 (442)
++|+|||||||||||++++++|+++ +++|++++|..... ...+.......+++++.+|+.+.. ..++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 4579999999999999999999998 67999998742111 111111112346888999987642 2479999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCC---CCCCCCCCCCCCCCCChh
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHP---QKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~---~~E~~~~~~~~~~~~~~Y 259 (442)
||+|+.........++..++++|+.++.+++++|++.+ + +|||+||..+||.....+ ..|+ .+..+.+.|
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~~Y 159 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTNPY 159 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCCCc
Confidence 99999765443334566788999999999999999987 5 999999999998765432 2344 355567889
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
+.+|..+|.+++.+.+..+++++++||++||||+.. ...++..++..+..++++.+++++.+.++|+|++|+|+++..
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~--~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQF--PEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCC--cccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 999999999999998888999999999999999752 245778888888888889988999999999999999999999
Q ss_pred HHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCc--eEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHH
Q 013467 340 LMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAK--IEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416 (442)
Q Consensus 340 ~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~--~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~ 416 (442)
++++... ++||+++++.+++.|+++.+.+.+|.+.. +.+.+..+.......+|++|+++ |||+|+++++|+|++++
T Consensus 238 ~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~-lGw~p~~~~~egl~~~i 316 (668)
T PLN02260 238 VLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKK-LGWQERTSWEEGLKKTM 316 (668)
T ss_pred HHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987654 59999999999999999999999997643 33333333344456789999975 99999999999999999
Q ss_pred HHHHHHhhc
Q 013467 417 KDFRQRIFG 425 (442)
Q Consensus 417 ~~~~~~~~~ 425 (442)
+||+++...
T Consensus 317 ~w~~~~~~~ 325 (668)
T PLN02260 317 EWYTSNPDW 325 (668)
T ss_pred HHHHhChhh
Confidence 999987653
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=313.65 Aligned_cols=306 Identities=23% Similarity=0.333 Sum_probs=237.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----cC--CCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----LL--EVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 187 (442)
++|+|+||||+||||+++++.|+++|++|++++|.................+.++.+|+.+.. +. ++|+|||+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 457999999999999999999999999999999865432211110101235667888887642 22 47999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCC-CCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPL-QHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
||.........++...+++|+.++.+++++|++.+ + +||++||..+|+... ..++.|+ .+..+.+.|+.+|.
T Consensus 83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y~~sK~ 157 (349)
T TIGR02622 83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPYSSSKA 157 (349)
T ss_pred CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcchhHHH
Confidence 99654444445677889999999999999999876 5 899999999998643 2356665 45566788999999
Q ss_pred HHHHHHHHHHhhc-------CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 265 TAETLTMDYHRGA-------GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 265 ~~E~~v~~~~~~~-------g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
++|.+++.+++.. +++++++||+++|||+.. ...++++.++..+..++++.+ +++++.++|+|++|+++++
T Consensus 158 ~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~-~~~~~~~~~~~~~~~g~~~~~-~~g~~~rd~i~v~D~a~a~ 235 (349)
T TIGR02622 158 CAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDW-AEDRLIPDVIRAFSSNKIVII-RNPDATRPWQHVLEPLSGY 235 (349)
T ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcc-hhhhhhHHHHHHHhcCCCeEE-CCCCcccceeeHHHHHHHH
Confidence 9999999887653 899999999999999742 234678888888888877764 6788999999999999999
Q ss_pred HHHHcCC------CCccEEecCC--CccCHHHHHHHHHHHhC-CCCceEeCC--CCCCCCCccccChHHHHHhhCCCccc
Q 013467 338 MRLMEGE------HVGPFNLGNP--GEFTMLELAQVVQETID-PNAKIEFRP--NTEDDPHKRKPDISRAKELLGWEPKV 406 (442)
Q Consensus 338 ~~~l~~~------~~g~~~i~~~--~~~s~~dl~~~l~~~~g-~~~~~~~~~--~~~~~~~~~~~d~~k~~~~LG~~p~~ 406 (442)
+.++++. ..++||++++ +.+++.|+++.+.+.++ .+..+...+ ...........|++|++++|||+|++
T Consensus 236 ~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~ 315 (349)
T TIGR02622 236 LLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRW 315 (349)
T ss_pred HHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCCCCC
Confidence 9887642 1359999974 79999999999988765 334444321 22233445678999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccc
Q 013467 407 SLRKGLPKMVKDFRQRIFGDH 427 (442)
Q Consensus 407 ~l~e~l~~~~~~~~~~~~~~~ 427 (442)
+++++|+++++|+++....+.
T Consensus 316 ~l~~gi~~~i~w~~~~~~~~~ 336 (349)
T TIGR02622 316 GLEEAVSRTVDWYKAWLRGED 336 (349)
T ss_pred CHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999998765544
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=308.40 Aligned_cols=299 Identities=32% Similarity=0.530 Sum_probs=238.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCc-cccccccCCCceeEEecccccc-----ccCC--CCEEEEe
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHDVVEP-----LLLE--VDQIYHL 187 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~Vih~ 187 (442)
+|+|||||||||++++++|+++| ++|++++|...... +.........++.++.+|+.+. ++.+ +|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 48999999999999999999987 68998876432111 1111111224678888888764 3444 8999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC--CeEEEeecCccccCCCCC-CCCCCCCCCCCCCCCCChhHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQH-PQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g--~r~i~iSS~~vy~~~~~~-~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
|+.........++..++++|+.++.+++++|++.+ +++|++||..+||..... ++.|. .+..+.+.|+.+|+
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 155 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKA 155 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCchHHHHH
Confidence 98754433445677789999999999999999874 499999999999865433 56666 45556688999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
.+|.+++.++++.+++++++||+++|||... ...++..++..+..++++++++++++.++|+|++|+++++..++++.
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 156 ASDHLVRAYHRTYGLPALITRCSNNYGPYQF--PEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccCCCCC--cccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 9999999998888999999999999999753 24677888888888888888889999999999999999999999876
Q ss_pred CCc-cEEecCCCccCHHHHHHHHHHHhCCCCce-EeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHH
Q 013467 345 HVG-PFNLGNPGEFTMLELAQVVQETIDPNAKI-EFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 345 ~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~ 422 (442)
..+ +||+++++.+++.|+++.+.+.++.+..+ ...+..........+|++|++++|||.|+++++++|+++++||+++
T Consensus 234 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~ 313 (317)
T TIGR01181 234 RVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDN 313 (317)
T ss_pred CCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhc
Confidence 554 99999999999999999999999864332 2222222223344689999999999999989999999999999876
Q ss_pred h
Q 013467 423 I 423 (442)
Q Consensus 423 ~ 423 (442)
.
T Consensus 314 ~ 314 (317)
T TIGR01181 314 E 314 (317)
T ss_pred c
Confidence 3
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=311.77 Aligned_cols=305 Identities=25% Similarity=0.387 Sum_probs=237.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc---cccccc--CCCceeEEeccccccc-----cC--CC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE---NVMHHF--GNPNFELIRHDVVEPL-----LL--EV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~-----~~--~~ 181 (442)
+++++|+|||||||||++++++|+++|++|++++|....... ...... ...++.++.+|+.+.. +. ++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 446799999999999999999999999999999875322211 111110 1235778888887652 22 68
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhH
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
|+|||+|+.........++...+++|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..+.+.|+
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y~ 157 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPYG 157 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHHH
Confidence 999999986543334456778899999999999999999886 8999999999987666678887 5666678999
Q ss_pred HHHHHHHHHHHHHHhh-cCCcEEEEeeCceeCCCCcc----CCC---chHHHHHHHHHcCC--CcEEec------CCcee
Q 013467 261 EGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPRMCI----DDG---RVVSNFVAQALRKE--PLTVYG------DGKQT 324 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~-~g~~~~iiRp~~v~G~~~~~----~~~---~~~~~~~~~~~~~~--~~~~~~------~~~~~ 324 (442)
.+|..+|.+++.+... .+++++++|++++||+.... ... ..+..++..+..++ .+.+++ ++.+.
T Consensus 158 ~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 237 (352)
T PLN02240 158 RTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGV 237 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEE
Confidence 9999999999988654 57999999999999975321 111 11223444455443 344554 67899
Q ss_pred EeccCHHHHHHHHHHHHcCC-----CC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHH
Q 013467 325 RSFQFVSDLVEGLMRLMEGE-----HV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKE 398 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~-----~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 398 (442)
++|+|++|+|++++.+++.. .. ++||+++++.+|+.|+++.+.+.+|.+..+...+....+......|++|+++
T Consensus 238 ~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 317 (352)
T PLN02240 238 RDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEK 317 (352)
T ss_pred EeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHHH
Confidence 99999999999999888642 22 4999999999999999999999999887777666555555566789999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
+|||+|+++++++|+++++|++++.
T Consensus 318 ~lg~~p~~~l~~~l~~~~~~~~~~~ 342 (352)
T PLN02240 318 ELGWKAKYGIDEMCRDQWNWASKNP 342 (352)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999998875
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=309.74 Aligned_cols=272 Identities=20% Similarity=0.216 Sum_probs=219.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccC--CCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLL--EVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~--~~d~Vih~A~ 189 (442)
|+||||||+||||++++++|+++| +|++++|... .+.+|+.+ +.+. ++|+|||+|+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~----------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST----------------DYCGDFSNPEGVAETVRKIRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc----------------cccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence 589999999999999999999999 7998887421 12234443 3344 5899999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
.........++...+.+|+.++.+|+++|++.|++|||+||..||+.....+++|+ ++..|.+.|+.+|+.+|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Yg~sK~~~E~~ 138 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVYGETKLAGEKA 138 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 87665566677788899999999999999999999999999999988766788888 5667778999999999999
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC--CceeEeccCHHHHHHHHHHHHcCCC-C
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD--GKQTRSFQFVSDLVEGLMRLMEGEH-V 346 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~Dva~ai~~~l~~~~-~ 346 (442)
++.+. .+++++|++++|||+. ..++..++..+..++++.++++ +.+.+.+.+++|++.++..++..+. .
T Consensus 139 ~~~~~----~~~~ilR~~~vyGp~~----~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~~ 210 (299)
T PRK09987 139 LQEHC----AKHLIFRTSWVYAGKG----NNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEVA 210 (299)
T ss_pred HHHhC----CCEEEEecceecCCCC----CCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCCC
Confidence 97764 4679999999999964 3567788877778888888877 5566666677788888888876643 4
Q ss_pred ccEEecCCCccCHHHHHHHHHHHh---CCCC---ceEeC-----CCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 347 GPFNLGNPGEFTMLELAQVVQETI---DPNA---KIEFR-----PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 347 g~~~i~~~~~~s~~dl~~~l~~~~---g~~~---~~~~~-----~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
|+||+++++.+|+.|+++.+.+.+ |.+. .+... +....++....+|++|+++.|||+|. +|+++|+++
T Consensus 211 giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~~ 289 (299)
T PRK09987 211 GLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVGVKRM 289 (299)
T ss_pred CeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHHHHHH
Confidence 799999999999999999997764 3332 12222 23345677889999999999999997 999999999
Q ss_pred HHHH
Q 013467 416 VKDF 419 (442)
Q Consensus 416 ~~~~ 419 (442)
++.+
T Consensus 290 ~~~~ 293 (299)
T PRK09987 290 LTEL 293 (299)
T ss_pred HHHH
Confidence 9865
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=304.78 Aligned_cols=290 Identities=25% Similarity=0.372 Sum_probs=224.5
Q ss_pred EEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCCC-cc
Q 013467 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASPV-HY 196 (442)
Q Consensus 120 lVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~~-~~ 196 (442)
||||||||||++|++.|+++|++|+++.+.. ..++.+.+..+..+. ++|+|||+|+..... ..
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~--------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~ 66 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHK--------------ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHAN 66 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeeccc--------------cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchh
Confidence 6999999999999999999999888664321 112222222222333 579999999975432 22
Q ss_pred cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHH
Q 013467 197 KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS-CYDEGKRTAETLTMDYH 274 (442)
Q Consensus 197 ~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK~~~E~~v~~~~ 274 (442)
..++...++.|+.++.+|+++|++.++ +||++||..+|+.....+++|+++.+ .+..+.+ .|+.+|..+|.+++.+.
T Consensus 67 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~e~~~~~~~ 145 (306)
T PLN02725 67 MTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWYAIAKIAGIKMCQAYR 145 (306)
T ss_pred hhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999997 89999999999977677888875432 1333333 59999999999999998
Q ss_pred hhcCCcEEEEeeCceeCCCCcc--CCCchHHHHHH----HHHcCCCcEE-ecCCceeEeccCHHHHHHHHHHHHcCCC-C
Q 013467 275 RGAGVEVRIARIFNTYGPRMCI--DDGRVVSNFVA----QALRKEPLTV-YGDGKQTRSFQFVSDLVEGLMRLMEGEH-V 346 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~ 346 (442)
+..+++++++||+++|||+... ....+++.++. ....+.++.+ ++++.+.++|+|++|++++++.+++... .
T Consensus 146 ~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~~ 225 (306)
T PLN02725 146 IQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGA 225 (306)
T ss_pred HHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccccC
Confidence 8889999999999999997532 12334444443 3345566555 6788899999999999999999998754 3
Q ss_pred ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 347 GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 347 g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
+.||+++++.+++.|+++.+.+.++.+..+.+.+..........+|++|+++ |||+|+++++++|+++++|+++++..
T Consensus 226 ~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 226 EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRS-LGWDPKFSLKDGLQETYKWYLENYET 303 (306)
T ss_pred cceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHHH-hCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 5899999999999999999999999877666544433334456789999974 99999999999999999999988754
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=302.78 Aligned_cols=289 Identities=20% Similarity=0.305 Sum_probs=215.6
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec----ccccccc-----CCCCEEEEecc
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH----DVVEPLL-----LEVDQIYHLAC 189 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----D~~~~~~-----~~~d~Vih~A~ 189 (442)
||||||+||||++|+++|+++|++|+++.|....... .... ..+++.+. ++.+..+ .++|+|||+||
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~ 77 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL---VDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA 77 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-HHhh---hhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence 8999999999999999999999977776654322111 0000 11111110 1112222 26899999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
...... .+....++.|+.++.+|+++|++.+++|||+||..+|+.....+.+|+ .+..|.+.|+.+|..+|++
T Consensus 78 ~~~~~~--~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 150 (308)
T PRK11150 78 CSSTTE--WDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVYGYSKFLFDEY 150 (308)
T ss_pred ecCCcC--CChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHHHHHHHHHHHH
Confidence 644322 244567899999999999999999889999999999997655566666 4556668899999999999
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEe-cCCceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVY-GDGKQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
++++....+++++++||+++|||+..... ..++..+...+.+++...++ ++++..++|+|++|+|++++.+++.+..
T Consensus 151 ~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~~ 230 (308)
T PRK11150 151 VRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGVS 230 (308)
T ss_pred HHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCCC
Confidence 99998888999999999999999853321 22344555667777665555 5567789999999999999999987766
Q ss_pred ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC----CCCCccccChHHHHHhhCCCcc-cCHHHHHHHHHHHHH
Q 013467 347 GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----DDPHKRKPDISRAKELLGWEPK-VSLRKGLPKMVKDFR 420 (442)
Q Consensus 347 g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~LG~~p~-~~l~e~l~~~~~~~~ 420 (442)
++||+++++.+++.|+++.+.+.++.. .+...+.+. ........|++|+++ +||+|. .+++++|+++++|+.
T Consensus 231 ~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 231 GIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred CeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 799999999999999999999999842 222222111 112234689999986 799987 499999999999974
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=302.96 Aligned_cols=300 Identities=24% Similarity=0.419 Sum_probs=231.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc--cccCCCceeEEecccccc-----ccC--CCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM--HHFGNPNFELIRHDVVEP-----LLL--EVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~ 187 (442)
|+|+|||||||||++++++|+++|++|++++|.......... ......++.++.+|+.+. ++. ++|+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 589999999999999999999999999999864332221111 111223466778887654 232 58999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC-CCCChhHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI-GVRSCYDEGKRT 265 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~-~~~~~Y~~sK~~ 265 (442)
|+..............+++|+.++.+++++|++.++ +||++||..+|+.....+++|+. +. .+.+.|+.+|..
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~-----~~~~p~~~Y~~sK~~ 155 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLM 155 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCcccccc-----CCCCCCChhHHHHHH
Confidence 986543333345667889999999999999999997 89999999999876666777773 33 456889999999
Q ss_pred HHHHHHHHHhhc-CCcEEEEeeCceeCCCCc----cCC----CchHHHHHHHHHcC--CCcEEec------CCceeEecc
Q 013467 266 AETLTMDYHRGA-GVEVRIARIFNTYGPRMC----IDD----GRVVSNFVAQALRK--EPLTVYG------DGKQTRSFQ 328 (442)
Q Consensus 266 ~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~----~~~----~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~v 328 (442)
+|.+++.++++. +++++++|++++||+... .+. ..++.. +..+..+ ..+.+++ ++.+.++|+
T Consensus 156 ~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 234 (338)
T PRK10675 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPY-IAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234 (338)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHH-HHHHHhcCCCceEEeCCcCCCCCCcEEEeeE
Confidence 999999987653 799999999999997421 111 123333 3334433 2344544 577889999
Q ss_pred CHHHHHHHHHHHHcCC---CC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCc
Q 013467 329 FVSDLVEGLMRLMEGE---HV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~---~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p 404 (442)
|++|+|++++.+++.. .. ++||+++++.+|+.|+++.+.+.+|.+..+...+....+....++|++|++++|||+|
T Consensus 235 ~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~p 314 (338)
T PRK10675 235 HVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRV 314 (338)
T ss_pred EHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCCC
Confidence 9999999999998752 22 4999999999999999999999999887776655444445567889999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 013467 405 KVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 405 ~~~l~e~l~~~~~~~~~~ 422 (442)
+++++++|+++++|++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 315 TRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred cCcHHHHHHHHHHHHHhh
Confidence 999999999999999775
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=303.01 Aligned_cols=303 Identities=18% Similarity=0.241 Sum_probs=221.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc--cccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN--VMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
++++|+||||+||||++|+++|+++|++|++++|........ ........++.++.+|+.+. .+.++|+|||+
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 87 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFHV 87 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEEe
Confidence 467899999999999999999999999999988864322110 00000113578888998764 35679999999
Q ss_pred cccCCCCcccCCh-hHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccccCCC----CCCCCCCCCCCC----CCCCCC
Q 013467 188 ACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPL----QHPQKETYWGNV----NPIGVR 256 (442)
Q Consensus 188 A~~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy~~~~----~~~~~E~~~~~~----~~~~~~ 256 (442)
|+... .+..++ ..++++|+.++.+++++|.+. ++ +|||+||..+|+... ..+++|+.|... .+..+.
T Consensus 88 A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~ 165 (338)
T PLN00198 88 ATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT 165 (338)
T ss_pred CCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence 98632 122233 356799999999999999886 45 999999999998532 345666654321 123456
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec-CCce----eEeccCHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG-DGKQ----TRSFQFVS 331 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~v~v~ 331 (442)
+.|+.+|.++|.+++.+++..|++++++||+++|||+.......++. ++..++.+..+.+.+ ++.+ .++|+||+
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~ 244 (338)
T PLN00198 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLS-LAMSLITGNEFLINGLKGMQMLSGSISITHVE 244 (338)
T ss_pred chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHH-HHHHHHcCCccccccccccccccCCcceeEHH
Confidence 78999999999999999888899999999999999985332223332 333456666655544 2222 36999999
Q ss_pred HHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCC-CCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHH
Q 013467 332 DLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDP-NAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLR 409 (442)
Q Consensus 332 Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 409 (442)
|++++++.+++.+.. +.| +++++.+++.|+++.+.+.++. +.+..+.+.. ......+|++|+++ +||+|+++++
T Consensus 245 D~a~a~~~~~~~~~~~~~~-~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~-~G~~p~~~l~ 320 (338)
T PLN00198 245 DVCRAHIFLAEKESASGRY-ICCAANTSVPELAKFLIKRYPQYQVPTDFGDFP--SKAKLIISSEKLIS-EGFSFEYGIE 320 (338)
T ss_pred HHHHHHHHHhhCcCcCCcE-EEecCCCCHHHHHHHHHHHCCCCCCCccccccC--CCCccccChHHHHh-CCceecCcHH
Confidence 999999999987654 578 4556789999999999998853 2333322211 12345689999988 6999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 013467 410 KGLPKMVKDFRQRIF 424 (442)
Q Consensus 410 e~l~~~~~~~~~~~~ 424 (442)
++|+++++||+++..
T Consensus 321 ~gi~~~~~~~~~~~~ 335 (338)
T PLN00198 321 EIYDQTVEYFKAKGL 335 (338)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999997653
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=299.28 Aligned_cols=301 Identities=19% Similarity=0.236 Sum_probs=222.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc--ccc-cCCCceeEEecccccc-----ccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHH-FGNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~--~~~-~~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
.+|+||||||+||||++++++|+++|++|++++|+........ ... ....++.++.+|+.+. .+.++|+|||
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 3569999999999999999999999999999888654321110 000 0124678888898765 3557999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccccCCC-----CCCCCCCCCCCCC-CCCCCCh
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPL-----QHPQKETYWGNVN-PIGVRSC 258 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy~~~~-----~~~~~E~~~~~~~-~~~~~~~ 258 (442)
+||..........+...+++|+.++.+++++|.+. ++ +||++||..+|+... ..+++|+.+.+.. ...+.+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 163 (325)
T PLN02989 84 TASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW 163 (325)
T ss_pred eCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccc
Confidence 99965432223346778899999999999999885 45 899999988775432 3356777443211 1123467
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
|+.+|..+|.+++.+.++.|++++++||+++|||+.... ..+...++..++.++... + .+.++|+|++|+|++++
T Consensus 164 Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~-~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~a~~ 238 (325)
T PLN02989 164 YVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPT-LNFSVAVIVELMKGKNPF--N--TTHHRFVDVRDVALAHV 238 (325)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCC-CCchHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHHHHH
Confidence 999999999999999888899999999999999986432 234445555666665432 2 24578999999999999
Q ss_pred HHHcCCC-CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCC--CCCCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 339 RLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPN--TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 339 ~~l~~~~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
.+++++. .+.||++ ++.+|+.|+++.+.+.++.. .+...+. ..........|++|+++ |||.|+++++++|+++
T Consensus 239 ~~l~~~~~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~~ 315 (325)
T PLN02989 239 KALETPSANGRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCLDKVKS-LGIIEFTPTETSLRDT 315 (325)
T ss_pred HHhcCcccCceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCHHHHHH-cCCCCCCCHHHHHHHH
Confidence 9998765 4699995 56899999999999999732 2211111 11122356789999986 9999999999999999
Q ss_pred HHHHHHHh
Q 013467 416 VKDFRQRI 423 (442)
Q Consensus 416 ~~~~~~~~ 423 (442)
++||+..+
T Consensus 316 ~~~~~~~~ 323 (325)
T PLN02989 316 VLSLKEKC 323 (325)
T ss_pred HHHHHHhC
Confidence 99997654
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=295.96 Aligned_cols=297 Identities=38% Similarity=0.573 Sum_probs=236.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCC-CEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEV-DQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~-d~Vih~A~~ 190 (442)
|+|||||||||||++|+++|+++||+|++++|......... ..+.++.+|+.+. ...++ |+|||+|+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEcccc
Confidence 35999999999999999999999999999998654433322 3455566665543 44456 999999997
Q ss_pred CCCCcccC-ChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCC-CCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 191 ASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP-LQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 191 ~~~~~~~~-~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~-~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
........ ++..++.+|+.++.+++++|++.++ +|||+||.++|+.. ...+++|+. .+..+.+.|+.+|+.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK~~~E 150 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSKLAAE 150 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHHHHHH
Confidence 65433333 3556899999999999999999887 99998888877754 333677763 24445458999999999
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCccCCC-chHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG-RVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
..++++.+..|++++++||+++|||+...... .+...++.....+.+ ....+++...++++|++|++++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 230 (314)
T COG0451 151 QLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD 230 (314)
T ss_pred HHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCC
Confidence 99999988789999999999999998643322 355666666777776 6666778888999999999999999999887
Q ss_pred CccEEecCCC-ccCHHHHHHHHHHHhCCCCc-eEeCC--CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHH
Q 013467 346 VGPFNLGNPG-EFTMLELAQVVQETIDPNAK-IEFRP--NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 346 ~g~~~i~~~~-~~s~~dl~~~l~~~~g~~~~-~~~~~--~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~ 421 (442)
.+.||++++. .+++.|+++.+.+.+|.+.. +...+ ..........+|.++++..|||+|++++++++.++++|+..
T Consensus 231 ~~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~ 310 (314)
T COG0451 231 GGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLK 310 (314)
T ss_pred CcEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 6699999987 89999999999999998866 45444 23344456788999999999999999999999999999976
Q ss_pred Hh
Q 013467 422 RI 423 (442)
Q Consensus 422 ~~ 423 (442)
..
T Consensus 311 ~~ 312 (314)
T COG0451 311 KL 312 (314)
T ss_pred hh
Confidence 53
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=300.65 Aligned_cols=306 Identities=17% Similarity=0.207 Sum_probs=216.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
.+|+||||||+||||++++++|+++|++|++++|................++.++.+|+.+. .+.++|+|||+|+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 88 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAA 88 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCc
Confidence 45699999999999999999999999999999886432211111111124678888998764 3567999999999
Q ss_pred cCCCCc--ccCChh-----HHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCC-----CCCCCCCCCCCC----
Q 013467 190 PASPVH--YKFNPV-----KTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQ-----HPQKETYWGNVN---- 251 (442)
Q Consensus 190 ~~~~~~--~~~~~~-----~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~-----~~~~E~~~~~~~---- 251 (442)
...... ...++. ..++.|+.++.+++++|++.+ + +||++||..+||.... .+++|+.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~~ 168 (353)
T PLN02896 89 SMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWN 168 (353)
T ss_pred cccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhhc
Confidence 754332 122333 345566799999999998875 5 9999999999985321 356666433221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCc--EEecCC---ceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL--TVYGDG---KQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~ 326 (442)
+..+.+.|+.+|+++|.+++.+++..+++++++||+++|||+....-..++..+... ..+... ..++.. ...++
T Consensus 169 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d 247 (353)
T PLN02896 169 TKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSP-ITGDSKLFSILSAVNSRMGSIA 247 (353)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHH-hcCCccccccccccccccCcee
Confidence 122445899999999999999998889999999999999997643222333333322 233221 111111 12369
Q ss_pred ccCHHHHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCC-CceEeCCCCCCCCCccccChHHHHHhhCCCc
Q 013467 327 FQFVSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPN-AKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p 404 (442)
|+|++|+|++++.+++.+.. +.|+ ++++.+++.|+++.+.+.++.. ..+.+.+....+. ....|.+++++ |||+|
T Consensus 248 fi~v~Dva~a~~~~l~~~~~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-lGw~p 324 (353)
T PLN02896 248 LVHIEDICDAHIFLMEQTKAEGRYI-CCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSI-PSEISSKKLRD-LGFEY 324 (353)
T ss_pred EEeHHHHHHHHHHHHhCCCcCccEE-ecCCCCCHHHHHHHHHHhCCCCCccccccccccCcc-ccccCHHHHHH-cCCCc
Confidence 99999999999999987643 5785 4577899999999999998732 3333322221111 24568888875 99999
Q ss_pred ccCHHHHHHHHHHHHHHHhh
Q 013467 405 KVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 405 ~~~l~e~l~~~~~~~~~~~~ 424 (442)
+++++++|+++++||++...
T Consensus 325 ~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 325 KYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred cCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999998765
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=285.77 Aligned_cols=302 Identities=20% Similarity=0.253 Sum_probs=225.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc--cccccc-CCCceeEEecccccc-----ccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHF-GNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~-~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
.+++|+||||+||||++|+++|+++||.|++.+|+.+..+. .+...- ...+..++.+|+.+. ++.+||.|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 46799999999999999999999999999999998765322 122211 123477888888664 6789999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCcccc-----CCCCCCCCCCCCCCCCCCC-CCCh
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYG-----DPLQHPQKETYWGNVNPIG-VRSC 258 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~-----~~~~~~~~E~~~~~~~~~~-~~~~ 258 (442)
+|.+..+.... ...+++++++.||.|++++|++.. + |||++||+.+.. ......++|++|.+.+-.. ....
T Consensus 85 ~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~ 163 (327)
T KOG1502|consen 85 TASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLW 163 (327)
T ss_pred eCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHH
Confidence 99876543332 344799999999999999999998 6 999999987543 2334578999986533221 2278
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
|..+|..+|+..++++++.+++.+++.|+.|+||...+... .....+...++|..-. +.+ ....||||+|||++++
T Consensus 164 Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~-~s~~~~l~~i~G~~~~-~~n--~~~~~VdVrDVA~AHv 239 (327)
T KOG1502|consen 164 YALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLN-SSLNALLKLIKGLAET-YPN--FWLAFVDVRDVALAHV 239 (327)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccc-hhHHHHHHHHhccccc-CCC--CceeeEeHHHHHHHHH
Confidence 99999999999999999999999999999999998755322 2233444556653222 222 3345999999999999
Q ss_pred HHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC--CCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 339 RLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE--DDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 339 ~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~--~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
.+++++.. |.|.+++ +..++.|+++.+.+.+.. ..+.-..... .......++.+|++.++||+.+ +++|++.++
T Consensus 240 ~a~E~~~a~GRyic~~-~~~~~~ei~~~l~~~~P~-~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~-~l~e~~~dt 316 (327)
T KOG1502|consen 240 LALEKPSAKGRYICVG-EVVSIKEIADILRELFPD-YPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFR-PLEETLSDT 316 (327)
T ss_pred HHHcCcccCceEEEec-CcccHHHHHHHHHHhCCC-CCCCCCCCccccccccccccccHHHHhcccceec-ChHHHHHHH
Confidence 99999976 5777765 455699999999999953 3332221111 1122346799999985558876 999999999
Q ss_pred HHHHHHHhh
Q 013467 416 VKDFRQRIF 424 (442)
Q Consensus 416 ~~~~~~~~~ 424 (442)
++++++.+.
T Consensus 317 ~~sl~~~~~ 325 (327)
T KOG1502|consen 317 VESLREKGL 325 (327)
T ss_pred HHHHHHhcC
Confidence 999998764
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=293.23 Aligned_cols=289 Identities=26% Similarity=0.360 Sum_probs=221.9
Q ss_pred EEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEecccccc-----c----cCCCCEEEEec
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----L----LLEVDQIYHLA 188 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~----~~~~d~Vih~A 188 (442)
|||||||||||+++++.|.++|+ +|++++|..... ..... ....+..|+.+. . +.++|+|||+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A 74 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQG 74 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEECc
Confidence 69999999999999999999997 788887653221 11110 012233344332 1 24799999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
+.... ...++...+++|+.++.+++++|++.+++||++||.++|+.... +..|++ .+..+.+.|+.+|..+|.
T Consensus 75 ~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~-~~~e~~----~~~~p~~~Y~~sK~~~e~ 147 (314)
T TIGR02197 75 ACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGEA-GFREGR----ELERPLNVYGYSKFLFDQ 147 (314)
T ss_pred cccCc--cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCCC-Cccccc----CcCCCCCHHHHHHHHHHH
Confidence 96432 33456778899999999999999998889999999999987543 445542 223466889999999999
Q ss_pred HHHHHHh--hcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEe------cCCceeEeccCHHHHHHHHH
Q 013467 269 LTMDYHR--GAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVY------GDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 269 ~v~~~~~--~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~v~Dva~ai~ 338 (442)
+++++.. ..+++++++||+.+|||+..... ..++..++..+..++.+.++ +++++.++|+|++|+++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~ 227 (314)
T TIGR02197 148 YVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNL 227 (314)
T ss_pred HHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHH
Confidence 9988543 23679999999999999854221 24566777777888777654 45778899999999999999
Q ss_pred HHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCC----CCCccccChHHHHHhhCCCcccCHHHHHHH
Q 013467 339 RLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED----DPHKRKPDISRAKELLGWEPKVSLRKGLPK 414 (442)
Q Consensus 339 ~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~ 414 (442)
.++.....++||+++++++|+.|+++.+.+.+|.+..+.+.+.+.. .......|++|+++.|||+|+++++++|++
T Consensus 228 ~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~ 307 (314)
T TIGR02197 228 WLLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPFTTLEEGVKD 307 (314)
T ss_pred HHHhcccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCCcccHHHHHHH
Confidence 9998855569999999999999999999999998765555433222 122456899999999999999999999999
Q ss_pred HHHHHH
Q 013467 415 MVKDFR 420 (442)
Q Consensus 415 ~~~~~~ 420 (442)
+++|++
T Consensus 308 ~~~~~~ 313 (314)
T TIGR02197 308 YVQWLL 313 (314)
T ss_pred HHHHHh
Confidence 999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=293.20 Aligned_cols=300 Identities=27% Similarity=0.465 Sum_probs=232.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c--CCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L--LEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~--~~~d~Vih~A~~ 190 (442)
+|+||||||+||++++++|+++|++|++++|................++.++.+|+.+.. + .++|+|||+||.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 589999999999999999999999999887643322222111111125677788877652 2 269999999997
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
........++...++.|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..+.+.|+.+|..+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y~~sK~~~e~~ 155 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPYGRSKLMSERI 155 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCchHHHHHHHHHH
Confidence 544444445667788999999999999999986 9999999999987666677777 4555678899999999999
Q ss_pred HHHHHhh-cCCcEEEEeeCceeCCCCcc-------CCCchHHHHHHHHH-cCCCcEEec------CCceeEeccCHHHHH
Q 013467 270 TMDYHRG-AGVEVRIARIFNTYGPRMCI-------DDGRVVSNFVAQAL-RKEPLTVYG------DGKQTRSFQFVSDLV 334 (442)
Q Consensus 270 v~~~~~~-~g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~v~v~Dva 334 (442)
++.++++ .+++++++||+++||+.... ....++..+..... ....+..++ ++...++|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a 235 (328)
T TIGR01179 156 LRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLA 235 (328)
T ss_pred HHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHH
Confidence 9998776 79999999999999986421 12334555554443 233444332 556789999999999
Q ss_pred HHHHHHHcCC----CCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccC-HH
Q 013467 335 EGLMRLMEGE----HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVS-LR 409 (442)
Q Consensus 335 ~ai~~~l~~~----~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~-l~ 409 (442)
+++..+++.. ..++||+++++.+|+.|+++.+.+.+|.+..+...+...........|+++++++|||+|+++ ++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~l~ 315 (328)
T TIGR01179 236 DAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDLE 315 (328)
T ss_pred HHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcchHH
Confidence 9999998752 235999999999999999999999999988877665544444556779999999999999997 99
Q ss_pred HHHHHHHHHHHHH
Q 013467 410 KGLPKMVKDFRQR 422 (442)
Q Consensus 410 e~l~~~~~~~~~~ 422 (442)
++|+++++|++++
T Consensus 316 ~~~~~~~~~~~~~ 328 (328)
T TIGR01179 316 IIIKTAWRWESRN 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998763
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=293.97 Aligned_cols=298 Identities=19% Similarity=0.308 Sum_probs=218.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc--ccccc-cCCCceeEEecccccc-----ccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHH-FGNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~--~~~~~-~~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
.+++|+||||+||||++++++|+++|++|+++.|+...... ..... ....++.++.+|+.+. .+.++|+|||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 35689999999999999999999999999999886543221 11100 0124678889998765 3567999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccc--cCC---CCCCCCCCCCCCCC-CCCCCCh
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVY--GDP---LQHPQKETYWGNVN-PIGVRSC 258 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy--~~~---~~~~~~E~~~~~~~-~~~~~~~ 258 (442)
+|+..... ..+.....+++|+.|+.+++++|++. ++ |||++||.++| +.. ...+++|++|.... ...+.+.
T Consensus 84 ~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 162 (322)
T PLN02986 84 TASPVFFT-VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW 162 (322)
T ss_pred eCCCcCCC-CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence 99864321 12223457899999999999999986 66 99999998754 332 23456777654211 1124578
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
|+.+|..+|.+++++.++.+++++++||+++|||+.... ..+...++..++.+..+ ++ .+.++|+||+|+|++++
T Consensus 163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~-~~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~a~~ 237 (322)
T PLN02986 163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPT-LNFSVELIVDFINGKNL--FN--NRFYRFVDVRDVALAHI 237 (322)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCC-CCccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHHHHH
Confidence 999999999999999888899999999999999975432 12223455555666543 33 45689999999999999
Q ss_pred HHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCcc--ccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 339 RLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKR--KPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 339 ~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~--~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
.+++++.. +.||++ ++.+++.|+++.+.+.++. ..+.... ...+.... .+|.+|+++ |||+|+ +++|+|+++
T Consensus 238 ~al~~~~~~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~~-~~~~~~~~~~~~d~~~~~~-lg~~~~-~l~e~~~~~ 312 (322)
T PLN02986 238 KALETPSANGRYIID-GPIMSVNDIIDILRELFPD-LCIADTN-EESEMNEMICKVCVEKVKN-LGVEFT-PMKSSLRDT 312 (322)
T ss_pred HHhcCcccCCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCCC-ccccccccCCccCHHHHHH-cCCccc-CHHHHHHHH
Confidence 99998754 699995 5689999999999999873 3332211 11112222 479999876 999998 999999999
Q ss_pred HHHHHHHh
Q 013467 416 VKDFRQRI 423 (442)
Q Consensus 416 ~~~~~~~~ 423 (442)
++||++.+
T Consensus 313 ~~~~~~~~ 320 (322)
T PLN02986 313 ILSLKEKC 320 (322)
T ss_pred HHHHHHcC
Confidence 99998754
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=298.81 Aligned_cols=302 Identities=21% Similarity=0.293 Sum_probs=215.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEecccccc-----ccCCCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEP-----LLLEVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~-----~~~~~d~Vi 185 (442)
+.++||||||+||||++++++|+++|++|++++|...... ...... ...++.++.+|+.+. .+.++|+||
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVK-KVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhH-HHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 3458999999999999999999999999999988643221 111110 112577888888764 456799999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCC-CCCC-CCCCCCCCCC----CCCCCC
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDP-LQHP-QKETYWGNVN----PIGVRS 257 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~-~~~~-~~E~~~~~~~----~~~~~~ 257 (442)
|+|+..... ........+++|+.++.+++++|++.+ + +|||+||.++|+.. ...+ ++|+.|.+.+ +..+.+
T Consensus 83 H~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 83 HVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 999864311 112234678999999999999999987 5 89999999877543 2233 4666543211 122346
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHH--HHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ--ALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
.|+.+|..+|.+++.+++++|++++++||+++|||+.... ....++.. ...+.... ++. ...++|+||+|+|+
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~---~~~~~~~~~~~~~~~~~~-~~~-~~~r~~v~V~Dva~ 236 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTS---MPPSLITALSLITGNEAH-YSI-IKQGQFVHLDDLCN 236 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCC---CCccHHHHHHHhcCCccc-cCc-CCCcceeeHHHHHH
Confidence 8999999999999999988899999999999999975321 11122221 12232221 222 23479999999999
Q ss_pred HHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCC-CceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 336 GLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPN-AKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 336 ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
+++.+++++.. +.| +++++.+++.|+++.+.+.++.. ..... +...........|+++++ .|||+|+++|+++|+
T Consensus 237 a~~~~l~~~~~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k~~-~lG~~p~~~l~egl~ 313 (351)
T PLN02650 237 AHIFLFEHPAAEGRY-ICSSHDATIHDLAKMLREKYPEYNIPARF-PGIDEDLKSVEFSSKKLT-DLGFTFKYSLEDMFD 313 (351)
T ss_pred HHHHHhcCcCcCceE-EecCCCcCHHHHHHHHHHhCcccCCCCCC-CCcCcccccccCChHHHH-HhCCCCCCCHHHHHH
Confidence 99999987654 578 56678899999999999988631 11111 111223344567888885 599999999999999
Q ss_pred HHHHHHHHHhhcc
Q 013467 414 KMVKDFRQRIFGD 426 (442)
Q Consensus 414 ~~~~~~~~~~~~~ 426 (442)
++++||+.+....
T Consensus 314 ~~i~~~~~~~~~~ 326 (351)
T PLN02650 314 GAIETCREKGLIP 326 (351)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999877553
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=293.79 Aligned_cols=298 Identities=19% Similarity=0.257 Sum_probs=217.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc--cccc-cCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN--VMHH-FGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~--~~~~-~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
+|+||||||+||||++++++|+++|++|++++|+....... +... ....+++++.+|+.+. .+.++|+|||+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 46899999999999999999999999999999864321111 1000 0124678889998764 45689999999
Q ss_pred cccCCCCcccCCh-hHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCc--cccCC---CCCCCCCCCCCCC-CCCCCCCh
Q 013467 188 ACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE--VYGDP---LQHPQKETYWGNV-NPIGVRSC 258 (442)
Q Consensus 188 A~~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~--vy~~~---~~~~~~E~~~~~~-~~~~~~~~ 258 (442)
|+.... ...++ ...+++|+.++.+++++|++. ++ +||++||.+ +|+.. ...+++|+.+... ......+.
T Consensus 84 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 161 (322)
T PLN02662 84 ASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLW 161 (322)
T ss_pred CCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccch
Confidence 986432 22234 368899999999999999987 76 999999986 46532 1234666632211 01112357
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
|+.+|..+|.+++.+.++.+++++++||+++|||+.... ......++..++.+... . +.+.++|+||+|+|++++
T Consensus 162 Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~i~v~Dva~a~~ 236 (322)
T PLN02662 162 YVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPT-LNTSAEAILNLINGAQT--F--PNASYRWVDVRDVANAHI 236 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCC-CCchHHHHHHHhcCCcc--C--CCCCcCeEEHHHHHHHHH
Confidence 999999999999999888899999999999999975322 12333445555555432 2 236789999999999999
Q ss_pred HHHcCCC-CccEEecCCCccCHHHHHHHHHHHhCCCCceEeC-CCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHH
Q 013467 339 RLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR-PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416 (442)
Q Consensus 339 ~~l~~~~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~-~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~ 416 (442)
.+++++. .|.||++ ++.+++.|+++.+.+.++.. .+... ...........+|++|+++ |||++. +++++|++++
T Consensus 237 ~~~~~~~~~~~~~~~-g~~~s~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~~~-~~~~~l~~~~ 312 (322)
T PLN02662 237 QAFEIPSASGRYCLV-ERVVHYSEVVKILHELYPTL-QLPEKCADDKPYVPTYQVSKEKAKS-LGIEFI-PLEVSLKDTV 312 (322)
T ss_pred HHhcCcCcCCcEEEe-CCCCCHHHHHHHHHHHCCCC-CCCCCCCCccccccccccChHHHHH-hCCccc-cHHHHHHHHH
Confidence 9999764 4689987 57899999999999998642 11111 1111133456789999996 999985 9999999999
Q ss_pred HHHHHHhh
Q 013467 417 KDFRQRIF 424 (442)
Q Consensus 417 ~~~~~~~~ 424 (442)
+||++...
T Consensus 313 ~~~~~~~~ 320 (322)
T PLN02662 313 ESLKEKGF 320 (322)
T ss_pred HHHHHcCC
Confidence 99987653
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=297.24 Aligned_cols=282 Identities=19% Similarity=0.248 Sum_probs=222.2
Q ss_pred CCCEEEEE----cCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc------cccCCCceeEEecccccc--cc--CC
Q 013467 115 KGLRIVVT----GGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM------HHFGNPNFELIRHDVVEP--LL--LE 180 (442)
Q Consensus 115 ~~~~vlVt----GatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~------~~~~~~~v~~~~~D~~~~--~~--~~ 180 (442)
.+++|||| |||||||++|+++|+++||+|++++|.......... ..+...+++++.+|+.+. .+ .+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 45689999 999999999999999999999999997543211100 011223578888888652 22 46
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+|+|||+++. +..++.+++++|++.|+ +|||+||.++|+.....++.|+ .+..+..
T Consensus 131 ~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~-----~~~~p~~-- 187 (378)
T PLN00016 131 FDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG-----DAVKPKA-- 187 (378)
T ss_pred ccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC-----CcCCCcc--
Confidence 9999998751 34578899999999998 9999999999987666666676 3333322
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
+|..+|.+++ +.+++++++||+++||++.. ..+...++..+..++++.+++++.+.++|+|++|+|++++.
T Consensus 188 --sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~---~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~ 258 (378)
T PLN00016 188 --GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNN---KDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFAL 258 (378)
T ss_pred --hHHHHHHHHH----HcCCCeEEEeceeEECCCCC---CchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHH
Confidence 7999998774 35899999999999999742 34556777788888888888888899999999999999999
Q ss_pred HHcCCC--CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC----------CCCCccccChHHHHHhhCCCcccC
Q 013467 340 LMEGEH--VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----------DDPHKRKPDISRAKELLGWEPKVS 407 (442)
Q Consensus 340 ~l~~~~--~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----------~~~~~~~~d~~k~~~~LG~~p~~~ 407 (442)
+++++. .++||+++++.+|+.|+++.+.+.+|.+.++...+... ........|++|++++|||+|+++
T Consensus 259 ~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw~p~~~ 338 (378)
T PLN00016 259 VVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGWTPKFD 338 (378)
T ss_pred HhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhcCCCCCCC
Confidence 998864 34999999999999999999999999887654332221 122344679999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 013467 408 LRKGLPKMVKDFRQRIFGDHK 428 (442)
Q Consensus 408 l~e~l~~~~~~~~~~~~~~~~ 428 (442)
++|+|.++++||+++...+++
T Consensus 339 l~egl~~~~~~~~~~~~~~~~ 359 (378)
T PLN00016 339 LVEDLKDRYELYFGRGRDRKE 359 (378)
T ss_pred HHHHHHHHHHHHHhcCCCccc
Confidence 999999999999988866444
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=284.21 Aligned_cols=271 Identities=24% Similarity=0.323 Sum_probs=214.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCC--CCEEEEecccCCCCc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLE--VDQIYHLACPASPVH 195 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~d~Vih~A~~~~~~~ 195 (442)
+|+|||||||||++++++|+++|++|++++|. ..++.+.+.....+.+ +|+|||+|+......
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 65 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDG 65 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------ccCCCCHHHHHHHHHhCCCCEEEECCccccccc
Confidence 48999999999999999999999999999873 1122222333334444 599999999754333
Q ss_pred ccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 013467 196 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR 275 (442)
Q Consensus 196 ~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~ 275 (442)
....+...+++|+.++.+++++|++.+++||++||..+|+.....+++|+ .+..+.+.|+.+|..+|.+++.+
T Consensus 66 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~-----~~~~~~~~Y~~~K~~~E~~~~~~-- 138 (287)
T TIGR01214 66 AESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYRED-----DATNPLNVYGQSKLAGEQAIRAA-- 138 (287)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCC-----CCCCCcchhhHHHHHHHHHHHHh--
Confidence 33456678899999999999999998889999999999987666778887 44556688999999999998765
Q ss_pred hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC--CCccEEecC
Q 013467 276 GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE--HVGPFNLGN 353 (442)
Q Consensus 276 ~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~--~~g~~~i~~ 353 (442)
+++++++||+++||++. ...++..++..+..++++.+.++ +.++++|++|+++++..+++.+ ..++||+++
T Consensus 139 --~~~~~ilR~~~v~G~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~ 211 (287)
T TIGR01214 139 --GPNALIVRTSWLYGGGG---GRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQRLARARGVYHLAN 211 (287)
T ss_pred --CCCeEEEEeeecccCCC---CCCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHhhccCCCCeEEEEC
Confidence 68999999999999973 24566677777777777776554 6789999999999999999876 346999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCc------eEeC-----CCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHH
Q 013467 354 PGEFTMLELAQVVQETIDPNAK------IEFR-----PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418 (442)
Q Consensus 354 ~~~~s~~dl~~~l~~~~g~~~~------~~~~-----~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~ 418 (442)
++.+++.|+++.+.+.+|.+.. +... +.....+....+|++|++++|||++. +++++|.++++.
T Consensus 212 ~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~~-~~~~~l~~~~~~ 286 (287)
T TIGR01214 212 SGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPLP-HWREALRAYLQE 286 (287)
T ss_pred CCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCCc-cHHHHHHHHHhh
Confidence 9999999999999999997653 1111 11122334567999999999999664 999999988763
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=293.55 Aligned_cols=272 Identities=26% Similarity=0.403 Sum_probs=205.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~~ 194 (442)
||||||||+|+||++|++.|.++|++|+.++|. .+++.+.+.....+. +.|+|||+||...+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 699999999999999999999999999999763 222222222222222 589999999988777
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~ 274 (442)
.++.+++..+.+|+.++.+|+++|.+.|+++||+||..||++....++.|+ ++..|.+.||++|+.+|+.+++..
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~YG~~K~~~E~~v~~~~ 140 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVYGRSKLEGEQAVRAAC 140 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHHHHHHHHHHHHHHHH-
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHHHHHHHHHHHHHHHhc
Confidence 888899999999999999999999999999999999999988877888998 677788999999999999998743
Q ss_pred hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-----ccE
Q 013467 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-----GPF 349 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-----g~~ 349 (442)
.++.|+|++++||+. ..+++.+++..+.+++.+.++. ++.+++++++|+|+++..++++... |+|
T Consensus 141 ----~~~~IlR~~~~~g~~----~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giy 210 (286)
T PF04321_consen 141 ----PNALILRTSWVYGPS----GRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLSGASPWGIY 210 (286)
T ss_dssp ----SSEEEEEE-SEESSS----SSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEE
T ss_pred ----CCEEEEecceecccC----CCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhcccccccceeE
Confidence 478999999999983 3678889999998888888765 4789999999999999999998765 899
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCC-ceEeCC-----CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHH
Q 013467 350 NLGNPGEFTMLELAQVVQETIDPNA-KIEFRP-----NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 350 ~i~~~~~~s~~dl~~~l~~~~g~~~-~~~~~~-----~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~ 419 (442)
|+++++.+|+.|+++.+.+.+|.+. .+...+ .....+.+..+|++|+++.||+++. +|+++|+++++.|
T Consensus 211 h~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 211 HLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWREGLEELVKQY 285 (286)
T ss_dssp E---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred EEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHHHHHHHHHHHh
Confidence 9999999999999999999999877 333322 2244667789999999999999998 9999999999887
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=275.60 Aligned_cols=303 Identities=27% Similarity=0.411 Sum_probs=251.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--c--CCCceeEEecccccccc-------CCCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--F--GNPNFELIRHDVVEPLL-------LEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~--~~~~v~~~~~D~~~~~~-------~~~d~V 184 (442)
+++||||||.||||+|.+.+|+++|+.|+++|.......+.+... + ....+.+++.|+.|..+ .+.|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 458999999999999999999999999999998655444333221 1 24689999999988633 258999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC-CCChhHHH
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG-VRSCYDEG 262 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~-~~~~Y~~s 262 (442)
+|+|+.........++..+...|+.|+.++++.+++.++ .+||.||+.+||.+..-|++|+ .+.. |.+.|+.+
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~-----~~t~~p~~pyg~t 156 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEE-----DPTDQPTNPYGKT 156 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCc-----CCCCCCCCcchhh
Confidence 999999887777888889999999999999999999997 8999999999999999999999 4555 78999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeC--CCCccC------CCchHHHHHHHH--------HcCCCcEEecCCceeEe
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYG--PRMCID------DGRVVSNFVAQA--------LRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G--~~~~~~------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 326 (442)
|...|.++.++....++.++.+|.++++| |..... ..+.++...... ..|.+... -+|+..++
T Consensus 157 K~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t-~dgt~vrd 235 (343)
T KOG1371|consen 157 KKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTT-IDGTIVRD 235 (343)
T ss_pred hHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccc-cCCCeeec
Confidence 99999999999888889999999999999 321111 111222111111 12333333 25688999
Q ss_pred ccCHHHHHHHHHHHHcCCCC----ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCC
Q 013467 327 FQFVSDLVEGLMRLMEGEHV----GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGW 402 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~----g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~ 402 (442)
++|+-|+|+.++.++.+... ++||++++...+..+|+.++++..|.+.++...+....+....+.++++++++|||
T Consensus 236 yi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elgw 315 (343)
T KOG1371|consen 236 YIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELGW 315 (343)
T ss_pred ceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhCC
Confidence 99999999999999987643 59999999999999999999999999999999888888888899999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHhh
Q 013467 403 EPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 403 ~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
+|.+.+++++++++.|+.+.-.
T Consensus 316 k~~~~iee~c~dlw~W~~~np~ 337 (343)
T KOG1371|consen 316 KAKYGLQEMLKDLWRWQKQNPS 337 (343)
T ss_pred ccccCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987643
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=268.58 Aligned_cols=271 Identities=23% Similarity=0.319 Sum_probs=233.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~~ 194 (442)
|+|||||++|.||..|++.|. .+++|+.++|. .+++.+.|...+.+. ++|+|||+|++...+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~---------------~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRA---------------ELDITDPDAVLEVIRETRPDVVINAAAYTAVD 64 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCc---------------cccccChHHHHHHHHhhCCCEEEECccccccc
Confidence 459999999999999999998 66899999773 356666665555554 589999999999988
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~ 274 (442)
..+.+++..+.+|..|+.+++++|++.|+++||+||..||+.....++.|+ ++..|.+.||+||+++|..++++
T Consensus 65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvYG~sKl~GE~~v~~~- 138 (281)
T COG1091 65 KAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVYGRSKLAGEEAVRAA- 138 (281)
T ss_pred cccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhhhHHHHHHHHHHHHh-
Confidence 888889999999999999999999999999999999999998888889999 68888899999999999999776
Q ss_pred hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-ccEEecC
Q 013467 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-GPFNLGN 353 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g~~~i~~ 353 (442)
+.+..|+|.+++||... .+|+..++.....++.+.+.. +++.+++++.|+|+++..++..... |+||+++
T Consensus 139 ---~~~~~I~Rtswv~g~~g----~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~~ 209 (281)
T COG1091 139 ---GPRHLILRTSWVYGEYG----NNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLEKEKEGGVYHLVN 209 (281)
T ss_pred ---CCCEEEEEeeeeecCCC----CCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHhccccCcEEEEeC
Confidence 46789999999999853 678888888888888888764 4999999999999999999988865 5999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCceEe------CCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHH
Q 013467 354 PGEFTMLELAQVVQETIDPNAKIEF------RPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 354 ~~~~s~~dl~~~l~~~~g~~~~~~~------~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~ 419 (442)
...+||.||++.+.+.++.+..+.. .+....+|....+|+.|+++.+|+.|. +|++.++++++..
T Consensus 210 ~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~~ 280 (281)
T COG1091 210 SGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALKALLDEL 280 (281)
T ss_pred CCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHHHHHhhc
Confidence 8899999999999999985553321 234456677788999999999999998 9999999998754
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=280.04 Aligned_cols=291 Identities=24% Similarity=0.329 Sum_probs=220.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|+|+||||+||||+++++.|+++|++|++++|...... .+....++++.+|+.+. .+.++|+|||+|+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR-----NLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc-----ccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 47999999999999999999999999999998643221 11223577888888764 456799999999853
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccC-CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
..+..++...+++|+.++.+++++|++.++ +||++||..+|+. ....+.+|+... .+....+.|+.+|.++|++
T Consensus 76 --~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK~~~e~~ 151 (328)
T TIGR03466 76 --RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSKFLAEQA 151 (328)
T ss_pred --ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHHHHHHHH
Confidence 234456788899999999999999999987 9999999999985 334566776321 2222246799999999999
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCc-c
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-P 348 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g-~ 348 (442)
++++..+.+++++++||+++||++... ......++.....+.. +...+ ...+|+|++|+|++++.+++++..| .
T Consensus 152 ~~~~~~~~~~~~~ilR~~~~~G~~~~~--~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~v~D~a~a~~~~~~~~~~~~~ 226 (328)
T TIGR03466 152 ALEMAAEKGLPVVIVNPSTPIGPRDIK--PTPTGRIIVDFLNGKM-PAYVD--TGLNLVHVDDVAEGHLLALERGRIGER 226 (328)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCCCCC--CCcHHHHHHHHHcCCC-ceeeC--CCcceEEHHHHHHHHHHHHhCCCCCce
Confidence 999988789999999999999997521 1122333344444432 22222 3368999999999999999887666 6
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC----------------CCCC-----------CccccChHHHHHhhC
Q 013467 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT----------------EDDP-----------HKRKPDISRAKELLG 401 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~----------------~~~~-----------~~~~~d~~k~~~~LG 401 (442)
|++ +++.+++.|+++.+.+.+|.+......+.. ...+ ....+|++|+++.||
T Consensus 227 ~~~-~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 305 (328)
T TIGR03466 227 YIL-GGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELG 305 (328)
T ss_pred EEe-cCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHHcC
Confidence 666 578999999999999999976544322210 0111 245789999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHh
Q 013467 402 WEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 402 ~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
|+|+ +++++|.++++||++++
T Consensus 306 ~~p~-~~~~~i~~~~~~~~~~~ 326 (328)
T TIGR03466 306 YRQR-PAREALRDAVEWFRANG 326 (328)
T ss_pred CCCc-CHHHHHHHHHHHHHHhC
Confidence 9997 99999999999998763
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=273.22 Aligned_cols=247 Identities=26% Similarity=0.353 Sum_probs=192.4
Q ss_pred EEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccCC
Q 013467 120 VVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPAS 192 (442)
Q Consensus 120 lVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~~ 192 (442)
|||||+||||++|+++|+++| ++|+++++........ ........+++.+|+.+. +++++|+|||+|++..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~--~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK--DLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch--hhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 699999999999999999999 7999999864433211 111222334888888774 7789999999999754
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccC-CCCCCC---CCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQ---KETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~-~~~~~~---~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
... ....+.++++|+.||+||+++|++.++ +|||+||.++++. ....++ +|+.+ .+......|+.||+.+|
T Consensus 79 ~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK~~AE 154 (280)
T PF01073_consen 79 PWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESKALAE 154 (280)
T ss_pred ccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHHHHHH
Confidence 322 345778999999999999999999998 9999999998875 222232 34422 23336688999999999
Q ss_pred HHHHHHHh---h--cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 268 TLTMDYHR---G--AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 268 ~~v~~~~~---~--~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
++++++.. + ..+.+++|||..||||+. ..+...+......+......+++....+++||+|+|.+++.+++
T Consensus 155 ~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d----~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~ 230 (280)
T PF01073_consen 155 KAVLEANGSELKNGGRLRTCALRPAGIYGPGD----QRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQ 230 (280)
T ss_pred HHHHhhcccccccccceeEEEEeccEEeCccc----ccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHH
Confidence 99999865 2 259999999999999974 34455666666666566677888889999999999999998765
Q ss_pred ---CC-----CCc-cEEecCCCccC-HHHHHHHHHHHhCCCCce
Q 013467 343 ---GE-----HVG-PFNLGNPGEFT-MLELAQVVQETIDPNAKI 376 (442)
Q Consensus 343 ---~~-----~~g-~~~i~~~~~~s-~~dl~~~l~~~~g~~~~~ 376 (442)
++ ..| .|+|++++++. +.||...+.+.+|.+.+.
T Consensus 231 ~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 231 ALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 22 234 99999999999 999999999999987554
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=281.32 Aligned_cols=287 Identities=17% Similarity=0.203 Sum_probs=212.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-------CCCceeEEecccccc-----ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-------GNPNFELIRHDVVEP-----LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-------~~~~v~~~~~D~~~~-----~~~~~ 181 (442)
.++|+||||||+||||++++++|+++|++|++++|+.... +.+.... ....+.++.+|+.+. .+.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~-~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~ 129 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK-EKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGC 129 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhc
Confidence 4567999999999999999999999999999988753221 1111100 012577888898775 35679
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecC--ccccCC--CC--CCCCCCCCCCC-CC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTS--EVYGDP--LQ--HPQKETYWGNV-NP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~--~vy~~~--~~--~~~~E~~~~~~-~~ 252 (442)
|+|||+|+...+...........++|+.++.+++++|++. ++ +|||+||. .+|+.. .. ..++|+.|... .+
T Consensus 130 d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~ 209 (367)
T PLN02686 130 AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFC 209 (367)
T ss_pred cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhhc
Confidence 9999999875443322222355678999999999999986 67 99999996 477642 22 34677755432 23
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
..+.+.|+.+|..+|.+++.+++..|++++++||++||||+...... ..+ ...+.+. +.+++++ .++|+||+|
T Consensus 210 ~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~---~~~-~~~~~g~-~~~~g~g--~~~~v~V~D 282 (367)
T PLN02686 210 RDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS---TAT-IAYLKGA-QEMLADG--LLATADVER 282 (367)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC---hhH-HHHhcCC-CccCCCC--CcCeEEHHH
Confidence 44567899999999999999988889999999999999997532111 112 2344443 4555554 357999999
Q ss_pred HHHHHHHHHcCC---CC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC-CCCCCccccChHHHHHhhCCCcccC
Q 013467 333 LVEGLMRLMEGE---HV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT-EDDPHKRKPDISRAKELLGWEPKVS 407 (442)
Q Consensus 333 va~ai~~~l~~~---~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~LG~~p~~~ 407 (442)
++++++.+++.+ .. +.| +++++.+++.|+++.+.+.+|.+..+...+.. ..++..+.+|++|++++|||+|+-.
T Consensus 283 va~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~~~~~ 361 (367)
T PLN02686 283 LAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRLMSRTRRCC 361 (367)
T ss_pred HHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHHHHHhhhcc
Confidence 999999999852 23 478 88889999999999999999987766555544 5677888999999999999999744
Q ss_pred HH
Q 013467 408 LR 409 (442)
Q Consensus 408 l~ 409 (442)
++
T Consensus 362 ~~ 363 (367)
T PLN02686 362 YD 363 (367)
T ss_pred cc
Confidence 43
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=271.29 Aligned_cols=268 Identities=20% Similarity=0.259 Sum_probs=207.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
++|+|+||||+||||++++++|+++| ++|++++|..... ..+.......++.++.+|+.+. .+.++|+|||+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ-WEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH-HHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 46799999999999999999999986 7899998853321 1111112224678889998775 34679999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
||.........++...+++|+.|+.+++++|++.++ +||++||... ..|.+.|+.+|+++
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~-------------------~~p~~~Y~~sK~~~ 142 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA-------------------ANPINLYGATKLAS 142 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCCCCHHHHHHHHH
Confidence 997543333445678899999999999999999987 9999999532 22346799999999
Q ss_pred HHHHHHHH---hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCC-CcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 267 ETLTMDYH---RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 267 E~~v~~~~---~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
|.+++.+. ...|++++++|||++|||+ +.+++.+......+. ++++ +++.+.++|+|++|++++++.+++
T Consensus 143 E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~-----~~~i~~~~~~~~~~~~~~~i-~~~~~~r~~i~v~D~a~a~~~al~ 216 (324)
T TIGR03589 143 DKLFVAANNISGSKGTRFSVVRYGNVVGSR-----GSVVPFFKSLKEEGVTELPI-TDPRMTRFWITLEQGVNFVLKSLE 216 (324)
T ss_pred HHHHHHHHhhccccCcEEEEEeecceeCCC-----CCcHHHHHHHHHhCCCCeee-CCCCceEeeEEHHHHHHHHHHHHh
Confidence 99998754 3569999999999999986 346777777666665 4665 467788999999999999999998
Q ss_pred CCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCC-CCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 343 GEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDD-PHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 343 ~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~-~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
+...+ +| +.+++.+++.|+++.+.+... +.+.+....+ .....+|.++++++|||+|++++++++.
T Consensus 217 ~~~~~~~~-~~~~~~~sv~el~~~i~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 217 RMLGGEIF-VPKIPSMKITDLAEAMAPECP----HKIVGIRPGEKLHEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred hCCCCCEE-ccCCCcEEHHHHHHHHHhhCC----eeEeCCCCCchhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence 75444 66 566678999999999998642 3333333333 2446689999999999999999999885
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=258.60 Aligned_cols=303 Identities=22% Similarity=0.274 Sum_probs=236.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccc-cccCCCceeEEecccccc-----ccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVM-HHFGNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~-~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
++.+++||||+||||++++.+|++++ .+|+++|.......-... ..+....+.+..+|+.+. ++.++ .|+|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh 81 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH 81 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence 34589999999999999999999998 799999986542111111 111356788888888765 66788 8888
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC-CCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ-HPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~-~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
+|+...+.....+++..+++|+.||.+++++|++.|+ ++||+||.+|...... ...+|+.. .|......|+.||.
T Consensus 82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y~~sKa 158 (361)
T KOG1430|consen 82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPYGESKA 158 (361)
T ss_pred eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---CccccccccchHHH
Confidence 8886665555556888999999999999999999998 9999999998754443 33344432 23444578999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc--
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-- 342 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~-- 342 (442)
.+|++++++....++.++++||..||||+. ...++.++..+..+......++++...++++++.|+.+++.+..
T Consensus 159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd----~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL 234 (361)
T KOG1430|consen 159 LAEKLVLEANGSDDLYTCALRPPGIYGPGD----KRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARAL 234 (361)
T ss_pred HHHHHHHHhcCCCCeeEEEEccccccCCCC----ccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHH
Confidence 999999998766689999999999999985 66778888888888888888888899999999999999988653
Q ss_pred ---CCC-Cc-cEEecCCCccCHHHHHHHHHHHhCCCCceEe-CCC--------------------CC-C-------CCCc
Q 013467 343 ---GEH-VG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEF-RPN--------------------TE-D-------DPHK 388 (442)
Q Consensus 343 ---~~~-~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~-~~~--------------------~~-~-------~~~~ 388 (442)
.+. .| +|+|+++.++...++...+.+.+|...+..+ .|. .+ . ....
T Consensus 235 ~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~~~~~ 314 (361)
T KOG1430|consen 235 LDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVALLGVT 314 (361)
T ss_pred HhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhheeeeccc
Confidence 222 34 9999999999888888899999998776211 111 00 0 0124
Q ss_pred cccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 389 RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 389 ~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
..+++.|+++.|||.|.+++++++.+++.|+......
T Consensus 315 ~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 315 RTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred cccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 5779999999999999999999999999987665443
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=253.40 Aligned_cols=225 Identities=36% Similarity=0.577 Sum_probs=190.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEecccC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLACPA 191 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A~~~ 191 (442)
|||||||||||++++++|+++|+.|+.+.|........... .++.++..|+.+. .+. ++|+|||+|+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeeccc
Confidence 79999999999999999999999999998854332211111 1678888888764 222 469999999864
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
............++.|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..+.+.|+.+|..+|+++
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y~~~K~~~e~~~ 151 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPYGASKRAAEELL 151 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccc
Confidence 32222356788899999999999999999998 9999999999999877788888 45577788999999999999
Q ss_pred HHHHhhcCCcEEEEeeCceeCCC-CccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC--Cc
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPR-MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH--VG 347 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~g 347 (442)
+++.++.+++++++||+++|||. .......++..++..+..++++.+++++++.++|+|++|+|++++.+++++. .+
T Consensus 152 ~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 231 (236)
T PF01370_consen 152 RDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAGG 231 (236)
T ss_dssp HHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTTE
T ss_pred cccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCCC
Confidence 99998889999999999999998 3335678899999999999999999999999999999999999999999988 45
Q ss_pred cEEec
Q 013467 348 PFNLG 352 (442)
Q Consensus 348 ~~~i~ 352 (442)
+||++
T Consensus 232 ~yNig 236 (236)
T PF01370_consen 232 IYNIG 236 (236)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=234.06 Aligned_cols=297 Identities=22% Similarity=0.292 Sum_probs=243.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccccccc--cCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--LLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~d~Vih~A~~~ 191 (442)
+++|||||++|.+|++|++-+.+.|. +=.++. ....+++.+..-.+.. ..+...|||+|+..
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~--------------~skd~DLt~~a~t~~lF~~ekPthVIhlAAmV 66 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFI--------------GSKDADLTNLADTRALFESEKPTHVIHLAAMV 66 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEe--------------ccccccccchHHHHHHHhccCCceeeehHhhh
Confidence 46899999999999999999998875 222221 1112222222112222 24689999999976
Q ss_pred CCCccc-CChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 192 SPVHYK-FNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 192 ~~~~~~-~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
+.-... ..+.++++.|+....|++..|.+.|+ ++++.-|+.+|.+....|++|+......+......|+..|+.+.-.
T Consensus 67 GGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~ 146 (315)
T KOG1431|consen 67 GGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQ 146 (315)
T ss_pred cchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHH
Confidence 543332 34778999999999999999999998 8999999999999999999999887777776678999999999988
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCc--cCCCchHHHHHHHHH----cCC-CcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMC--IDDGRVVSNFVAQAL----RKE-PLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~--~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
.+.|..++|..++.+-|.++|||..+ +.++.+++.++.++- .|. .+.+||+|...++|+|++|+|+++++++.
T Consensus 147 n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr 226 (315)
T KOG1431|consen 147 NQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLR 226 (315)
T ss_pred HHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHH
Confidence 89999999999999999999999875 345667777766543 343 68899999999999999999999999998
Q ss_pred CCC-CccEEecCCC--ccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccC-HHHHHHHHHHH
Q 013467 343 GEH-VGPFNLGNPG--EFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVS-LRKGLPKMVKD 418 (442)
Q Consensus 343 ~~~-~g~~~i~~~~--~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~-l~e~l~~~~~~ 418 (442)
+-. ....++..++ .+|+.|+++++.++++...++.+.....+...+..+|++|++. |+|+|+++ |+++|.++++|
T Consensus 227 ~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~W 305 (315)
T KOG1431|consen 227 EYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRS-LLPDFKFTPLEQAISETVQW 305 (315)
T ss_pred hhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHH-hCCCcccChHHHHHHHHHHH
Confidence 754 4678888776 9999999999999999999999998888888999999999988 99999996 99999999999
Q ss_pred HHHHhhccc
Q 013467 419 FRQRIFGDH 427 (442)
Q Consensus 419 ~~~~~~~~~ 427 (442)
|.++....+
T Consensus 306 y~~Ny~qar 314 (315)
T KOG1431|consen 306 YLDNYEQAR 314 (315)
T ss_pred HHHhHHhhc
Confidence 999876443
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=251.03 Aligned_cols=271 Identities=18% Similarity=0.227 Sum_probs=197.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC-
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV- 194 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~- 194 (442)
.|+||||||+||||++|++.|+++|++|+...+... +.+.+..|+.+ .++|+|||+||.....
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~-------------~~~~v~~~l~~---~~~D~ViH~Aa~~~~~~ 72 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLE-------------NRASLEADIDA---VKPTHVFNAAGVTGRPN 72 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccC-------------CHHHHHHHHHh---cCCCEEEECCcccCCCC
Confidence 368999999999999999999999999976432110 00111112221 2689999999976532
Q ss_pred --cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCC------CCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 195 --HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ------HPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 195 --~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~------~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
.+..++...+++|+.++.+|+++|++.|++++++||..+|+.... .++.|++ .+..+.+.|+.+|+++
T Consensus 73 ~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK~~~ 148 (298)
T PLN02778 73 VDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTKAMV 148 (298)
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHHHHH
Confidence 234578889999999999999999999988888888888865321 2356553 2333447899999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
|.+++.+. +..++|++..+|++. .....|+..++.+..+...+ .+++|++|++++++.++++...
T Consensus 149 E~~~~~y~-----~~~~lr~~~~~~~~~-----~~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~~~ 213 (298)
T PLN02778 149 EELLKNYE-----NVCTLRVRMPISSDL-----SNPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRNLT 213 (298)
T ss_pred HHHHHHhh-----ccEEeeecccCCccc-----ccHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCCCC
Confidence 99998874 356888887777642 12245677778777655433 2799999999999999987666
Q ss_pred ccEEecCCCccCHHHHHHHHHHHhCCCCce---EeCCCCC---CCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHH
Q 013467 347 GPFNLGNPGEFTMLELAQVVQETIDPNAKI---EFRPNTE---DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 347 g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~---~~~~~~~---~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~ 420 (442)
|+||+++++.+|+.|+++.+.+.++.+..+ ...+... .......+|.+|+++.++-.+. ..+++++..++.++
T Consensus 214 g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~ 292 (298)
T PLN02778 214 GIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLP-IKESLIKYVFEPNK 292 (298)
T ss_pred CeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccc-hHHHHHHHHHHHHH
Confidence 899999999999999999999999976432 1111100 0112336999999998876565 67888888888775
Q ss_pred HH
Q 013467 421 QR 422 (442)
Q Consensus 421 ~~ 422 (442)
+.
T Consensus 293 ~~ 294 (298)
T PLN02778 293 KT 294 (298)
T ss_pred hh
Confidence 54
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=252.91 Aligned_cols=275 Identities=18% Similarity=0.188 Sum_probs=196.1
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC-ccc
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV-HYK 197 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~-~~~ 197 (442)
||||||+||||++++++|+++|++|++++|+......... ..+.....+.....+.++|+|||+|+..... .+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~~ 75 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRWT 75 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccCC
Confidence 6899999999999999999999999999997544322111 1111122233344667899999999864432 222
Q ss_pred -CChhHHHHHhHHHHHHHHHHHHHcCC---eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013467 198 -FNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273 (442)
Q Consensus 198 -~~~~~~~~~nv~gt~~ll~~a~~~g~---r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (442)
.....+++.|+.++.+++++|++.++ +||++||.++|+.....+++|+. +..+.+.|+..+...|..+..+
T Consensus 76 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~-----~~~~~~~~~~~~~~~e~~~~~~ 150 (292)
T TIGR01777 76 EERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED-----SPAGDDFLAELCRDWEEAAQAA 150 (292)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc-----CCCCCChHHHHHHHHHHHhhhc
Confidence 23456788999999999999999984 46667777889876666777773 2333345666676677766544
Q ss_pred HhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-CccEEec
Q 013467 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPFNLG 352 (442)
Q Consensus 274 ~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g~~~i~ 352 (442)
++.+++++++||+++|||+. ..+..+.......... .++++++.++|+|++|+|+++..+++++. .++||++
T Consensus 151 -~~~~~~~~ilR~~~v~G~~~-----~~~~~~~~~~~~~~~~-~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~g~~~~~ 223 (292)
T TIGR01777 151 -EDLGTRVVLLRTGIVLGPKG-----GALAKMLPPFRLGLGG-PLGSGRQWFSWIHIEDLVQLILFALENASISGPVNAT 223 (292)
T ss_pred -hhcCCceEEEeeeeEECCCc-----chhHHHHHHHhcCccc-ccCCCCcccccEeHHHHHHHHHHHhcCcccCCceEec
Confidence 44689999999999999863 2333333222221111 25678899999999999999999998754 4699999
Q ss_pred CCCccCHHHHHHHHHHHhCCCCceEeCCCCC----------CCCCccccChHHHHHhhCCCccc-CHHHHH
Q 013467 353 NPGEFTMLELAQVVQETIDPNAKIEFRPNTE----------DDPHKRKPDISRAKELLGWEPKV-SLRKGL 412 (442)
Q Consensus 353 ~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----------~~~~~~~~d~~k~~~~LG~~p~~-~l~e~l 412 (442)
+++++++.|+++.+.+.+|.+..+. .|.+. ........+++++++ +||+|.+ +++|++
T Consensus 224 ~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 224 APEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred CCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 9999999999999999999765443 22211 001245678899986 9999999 588764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=269.98 Aligned_cols=251 Identities=22% Similarity=0.308 Sum_probs=189.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|+|+||||+||||++++++|+++|++|++++|..... . ..++.++.+|+.+. .+.++|+|||+|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999999999999853211 1 12467788887664 456899999999753
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
.+ .+++|+.++.+++++|++.++ +||++||.. |..+|.++
T Consensus 73 ~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~ll 113 (854)
T PRK05865 73 GR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQML 113 (854)
T ss_pred cc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHHH
Confidence 21 457999999999999999997 899999842 78888877
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC--Ccc
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH--VGP 348 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~g~ 348 (442)
. +.+++++++||+++|||+. ..++..++. .++...+++...++|+|++|+|+++..+++++. .++
T Consensus 114 ~----~~gl~~vILRp~~VYGP~~--------~~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~ggv 180 (854)
T PRK05865 114 A----DCGLEWVAVRCALIFGRNV--------DNWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSGP 180 (854)
T ss_pred H----HcCCCEEEEEeceEeCCCh--------HHHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCCe
Confidence 4 3589999999999999862 233333332 222223445567899999999999999987543 469
Q ss_pred EEecCCCccCHHHHHHHHHHHhC---CCCceEeCCCC--CCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 349 FNLGNPGEFTMLELAQVVQETID---PNAKIEFRPNT--EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g---~~~~~~~~~~~--~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
||+++++.+|+.|+++.+.+... .+......+.. ........+|++|+++.|||+|+++++++|+++++||++++
T Consensus 181 yNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r~ri 260 (854)
T PRK05865 181 VNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTLAVRGRI 260 (854)
T ss_pred EEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999987542 11111111101 01112346899999999999999999999999999999876
Q ss_pred hccc
Q 013467 424 FGDH 427 (442)
Q Consensus 424 ~~~~ 427 (442)
.-.+
T Consensus 261 ~~~~ 264 (854)
T PRK05865 261 GLGK 264 (854)
T ss_pred cccc
Confidence 5433
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=247.05 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=201.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|+|+|||||||||++++++|+++||+|++++|+.... . .+...+++++.+|+.+. ++.++|+|||+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~-~----~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA-S----FLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh-h----hHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999999999999999864221 1 11224678899998764 567899999987531
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
..++..+.++|+.++.+++++|+++|+ +||++||.+... . +...|..+|..+|..+
T Consensus 76 -----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~---------------~---~~~~~~~~K~~~e~~l 132 (317)
T CHL00194 76 -----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ---------------Y---PYIPLMKLKSDIEQKL 132 (317)
T ss_pred -----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc---------------c---CCChHHHHHHHHHHHH
Confidence 123445678999999999999999998 999999965321 0 1145889999999877
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC--Ccc
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH--VGP 348 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~g~ 348 (442)
+ +.+++++++||+.+|+.. +..+....+.+.+..+ .++.+.++|+|++|+|++++.+++++. .++
T Consensus 133 ~----~~~l~~tilRp~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~ 199 (317)
T CHL00194 133 K----KSGIPYTIFRLAGFFQGL--------ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLSLPETKNKT 199 (317)
T ss_pred H----HcCCCeEEEeecHHhhhh--------hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhcCccccCcE
Confidence 4 458999999999887631 1222222334444443 445667899999999999999998764 349
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC--------------------------C-CCCccccChHHHHHhhC
Q 013467 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE--------------------------D-DPHKRKPDISRAKELLG 401 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~--------------------------~-~~~~~~~d~~k~~~~LG 401 (442)
||+++++.+|+.|+++.+.+.+|.+..+...|... . .......+.+++.+.||
T Consensus 200 ~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 279 (317)
T CHL00194 200 FPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAELYKIFK 279 (317)
T ss_pred EEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhC
Confidence 99999999999999999999999887765544210 0 00123456788999999
Q ss_pred CCcc--cCHHHHHHHHHHHHHHHhhc
Q 013467 402 WEPK--VSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 402 ~~p~--~~l~e~l~~~~~~~~~~~~~ 425 (442)
+.|. .++++++++.+...++++..
T Consensus 280 ~~p~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T CHL00194 280 IDPNELISLEDYFQEYFERILKRLKD 305 (317)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9983 48899888888888877654
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=242.65 Aligned_cols=273 Identities=17% Similarity=0.143 Sum_probs=192.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-ccccccc--CCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHF--GNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~--~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
+++|+|||||||||++++++|+++|++|++++|+..... ......+ ...++.++.+|+.+. .+.++|.|+|.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~~ 85 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFCC 85 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 458999999999999999999999999999998532111 0111111 123578888888764 56789999998
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccc--cCC---CCCCCCCCCCCCCC-CCCCCChh
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVY--GDP---LQHPQKETYWGNVN-PIGVRSCY 259 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy--~~~---~~~~~~E~~~~~~~-~~~~~~~Y 259 (442)
++.... .......++++|+.|+.+++++|.+. ++ +||++||..++ +.. ...+++|+.|.+.. .......|
T Consensus 86 ~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 163 (297)
T PLN02583 86 FDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWH 163 (297)
T ss_pred CccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHH
Confidence 764321 12235678999999999999999886 45 99999998764 311 23356777653211 11122369
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
+.+|..+|+++++++++.|+++++|||++||||+.... . ..+.+. ...+++ ..++||||+|+|+++++
T Consensus 164 ~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~-----~----~~~~~~-~~~~~~--~~~~~v~V~Dva~a~~~ 231 (297)
T PLN02583 164 ALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQH-----N----PYLKGA-AQMYEN--GVLVTVDVNFLVDAHIR 231 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCc-----h----hhhcCC-cccCcc--cCcceEEHHHHHHHHHH
Confidence 99999999999999887899999999999999975211 0 122222 122222 34679999999999999
Q ss_pred HHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeC-CCCCCCCCccccChHHHHHhhCCCc
Q 013467 340 LMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR-PNTEDDPHKRKPDISRAKELLGWEP 404 (442)
Q Consensus 340 ~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~-~~~~~~~~~~~~d~~k~~~~LG~~p 404 (442)
+++.+.. +.|+++++....+.++++.+.+.++. ..+... ...........++++|+++ |||+.
T Consensus 232 al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~ 296 (297)
T PLN02583 232 AFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPL-IPSPPPYEMQGSEVYQQRIRNKKLNK-LMEDF 296 (297)
T ss_pred HhcCcccCCcEEEecCCCccHHHHHHHHHHhCCC-CCCCCcccccCCCccccccChHHHHH-hCccc
Confidence 9997765 48888877666678999999999863 333211 1011223456789999977 99874
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=226.59 Aligned_cols=304 Identities=25% Similarity=0.292 Sum_probs=246.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc-----ccccCCCceeEEeccccccc-------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV-----MHHFGNPNFELIRHDVVEPL-------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~-----~~~~~~~~v~~~~~D~~~~~-------~~~~d~ 183 (442)
+|+.||||-||+-|++|++.|++.|++|..+.|+....+... ..+....++.++.+|++|.. ..+.|-
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 568999999999999999999999999999999755444331 22334556889999998862 236899
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhH
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
|+|+|+........+.|....+++-.|+.+||++.+..| +||...||+..||...+.|.+|. .|+.|.++|+
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSPYA 156 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYA 156 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCHHH
Confidence 999999988877778888888999999999999998865 38999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHHHH
Q 013467 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
.+|..+..+...+.+.+|+-.+.-..+|--+|.... .-.+-+...+.++..|.. -...|+-+..++|-|..|.++++.
T Consensus 157 vAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mw 236 (345)
T COG1089 157 VAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMW 236 (345)
T ss_pred HHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHH
Confidence 999999999999988889888776665555554311 112334445555666633 345688899999999999999999
Q ss_pred HHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceE------------------eCCCCCCCC---CccccChHHHH
Q 013467 339 RLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIE------------------FRPNTEDDP---HKRKPDISRAK 397 (442)
Q Consensus 339 ~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~------------------~~~~~~~~~---~~~~~d~~k~~ 397 (442)
.+++++....|++++|...|..||++...+..|.+..+. ..++.-.+| .-..-|++|++
T Consensus 237 lmLQq~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llgdp~KA~ 316 (345)
T COG1089 237 LMLQQEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAK 316 (345)
T ss_pred HHHccCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhcCCHHHHH
Confidence 999999999999999999999999999999999665532 111111222 23466999999
Q ss_pred HhhCCCcccCHHHHHHHHHHHHHHHhh
Q 013467 398 ELLGWEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 398 ~~LG~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
+.|||+|++++++.+++|+++..++..
T Consensus 317 ~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 317 EKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred HHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999887654
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=230.80 Aligned_cols=287 Identities=17% Similarity=0.202 Sum_probs=228.7
Q ss_pred CCccccccccCCCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccc
Q 013467 95 PRVGFGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174 (442)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~ 174 (442)
...++|++++++. .+.|+|||||+|+++|++|.+.|.+|++.+|..+.....+....+..++-+...|+.
T Consensus 50 kkGtGGRsS~sGi----------VaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~ 119 (391)
T KOG2865|consen 50 KKGTGGRSSVSGI----------VATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLR 119 (391)
T ss_pred cCCCCCcccccce----------EEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCC
Confidence 3445667777765 689999999999999999999999999999988777766666667788889999988
Q ss_pred ccc-----cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 175 EPL-----LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 175 ~~~-----~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
|+. .+..++|||+.| .+|+.....+.++|+.+.+.|++.|+++|+ |||++|+.+.
T Consensus 120 DedSIr~vvk~sNVVINLIG----rd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga--------------- 180 (391)
T KOG2865|consen 120 DEDSIRAVVKHSNVVINLIG----RDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA--------------- 180 (391)
T ss_pred CHHHHHHHHHhCcEEEEeec----cccccCCcccccccchHHHHHHHHHHhhChhheeehhhccc---------------
Confidence 874 456899999998 567777888889999999999999999999 9999999873
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc-eeEec
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK-QTRSF 327 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 327 (442)
.+...+.|-.+|+++|..++++. .+.+|+||..|||. ..++++.+...+.+-+.++.++.|. .+..+
T Consensus 181 ---nv~s~Sr~LrsK~~gE~aVrdaf----PeAtIirPa~iyG~-----eDrfln~ya~~~rk~~~~pL~~~GekT~K~P 248 (391)
T KOG2865|consen 181 ---NVKSPSRMLRSKAAGEEAVRDAF----PEATIIRPADIYGT-----EDRFLNYYASFWRKFGFLPLIGKGEKTVKQP 248 (391)
T ss_pred ---cccChHHHHHhhhhhHHHHHhhC----Ccceeechhhhccc-----chhHHHHHHHHHHhcCceeeecCCcceeecc
Confidence 23334789999999999998875 56799999999994 5788888877777678888887764 66899
Q ss_pred cCHHHHHHHHHHHHcCCCC-c-cEEecCCCccCHHHHHHHHHHHhCCCCceE-----------------eCCCCCCCC--
Q 013467 328 QFVSDLVEGLMRLMEGEHV-G-PFNLGNPGEFTMLELAQVVQETIDPNAKIE-----------------FRPNTEDDP-- 386 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~-g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~-----------------~~~~~~~~~-- 386 (442)
+||.|||.+|+.++.+|++ | +|.+++++.+.+.|+++.+-+....-..+. ..|.+...+
T Consensus 249 VyV~DVaa~IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln 328 (391)
T KOG2865|consen 249 VYVVDVAAAIVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLN 328 (391)
T ss_pred EEEehHHHHHHHhccCccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCC
Confidence 9999999999999999975 5 999999999999999999988765422111 111111101
Q ss_pred ---------CccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 387 ---------HKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 387 ---------~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
.+.+++....-++||..++ ++|..-.+.+-.|++-.
T Consensus 329 ~d~ie~~~v~~~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~~~ 373 (391)
T KOG2865|consen 329 RDQIERLTVTDLVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRKGG 373 (391)
T ss_pred HHHhhheeehhhhcCCCCcHhhcCceee-ecccccHHHHHHHhhcc
Confidence 1224455555567999986 88888888888887664
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=257.08 Aligned_cols=252 Identities=15% Similarity=0.170 Sum_probs=187.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccc--cc-cc-----c--------------CCCceeEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKEN--VM-HH-----F--------------GNPNFELI 169 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~--~~-~~-----~--------------~~~~v~~~ 169 (442)
++++|||||||||||+++++.|++.+. +|+++.|........ +. .. + ...++.++
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 456899999999999999999998753 789999965432211 10 00 0 01578899
Q ss_pred ecccccc------------ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCcccc
Q 013467 170 RHDVVEP------------LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~~~------------~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy~ 235 (442)
.+|+.++ .+.++|+|||+|+... +..++...+++|+.|+.+|+++|++. ++ +|||+||.++||
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG 166 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN---FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCG 166 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC---CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEec
Confidence 9998632 3357999999999754 34567888999999999999999986 55 899999999998
Q ss_pred CCCCCCCCCCCCCCC--------------------------------------------C---CCCCCChhHHHHHHHHH
Q 013467 236 DPLQHPQKETYWGNV--------------------------------------------N---PIGVRSCYDEGKRTAET 268 (442)
Q Consensus 236 ~~~~~~~~E~~~~~~--------------------------------------------~---~~~~~~~Y~~sK~~~E~ 268 (442)
.... .+.|..+.+. . .....+.|+.||+.+|.
T Consensus 167 ~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~ 245 (491)
T PLN02996 167 EKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEM 245 (491)
T ss_pred CCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHH
Confidence 6432 1222111100 0 12234789999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCc-----hHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR-----VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
+++++.. +++++++||++|||++..+..+. ....++..+..|....+++++++.++++||+|++++++.++..
T Consensus 246 lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~ 323 (491)
T PLN02996 246 LLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAA 323 (491)
T ss_pred HHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHH
Confidence 9988743 89999999999999976442221 1233444455666666789999999999999999999999875
Q ss_pred C----C-CccEEecCC--CccCHHHHHHHHHHHhCC
Q 013467 344 E----H-VGPFNLGNP--GEFTMLELAQVVQETIDP 372 (442)
Q Consensus 344 ~----~-~g~~~i~~~--~~~s~~dl~~~l~~~~g~ 372 (442)
. . ..+||++++ +++++.|+++.+.+.++.
T Consensus 324 ~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~ 359 (491)
T PLN02996 324 HAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSK 359 (491)
T ss_pred hhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhh
Confidence 2 2 238999998 899999999999998864
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=267.17 Aligned_cols=299 Identities=23% Similarity=0.264 Sum_probs=214.1
Q ss_pred CEEEEEcCCchhHHHHHHHHH--hCCCeEEEEeCCCCCCc-cccccccCCCceeEEeccccccc----------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLI--ARGDSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHDVVEPL----------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll--~~g~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~----------~~~~d~ 183 (442)
|+|||||||||||++++++|+ ++|++|++++|...... ..+.......+++++.+|+.+.. +.++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 589999999999999999999 57999999999532111 11111112246888889987632 267999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
|||+||.... ........++|+.++.+++++|++.++ +|||+||..+||.... ..+|+++. .+..+.+.|+.+
T Consensus 81 Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~--~~~~~~~~Y~~s 154 (657)
T PRK07201 81 VVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFD--EGQGLPTPYHRT 154 (657)
T ss_pred EEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccch--hhcCCCCchHHH
Confidence 9999986432 334567789999999999999999987 9999999999986432 34454322 122334679999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCC-----chHHHHHHHHHc-CCCcEEecCCceeEeccCHHHHHHH
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG-----RVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
|+.+|.++++ ..+++++++||++|||+....... .++..++..... ...++.++.+....+++|++|++++
T Consensus 155 K~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~a 231 (657)
T PRK07201 155 KFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADA 231 (657)
T ss_pred HHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHH
Confidence 9999999875 248999999999999986421111 112222222211 1223344555667899999999999
Q ss_pred HHHHHcCCC-Cc-cEEecCCCccCHHHHHHHHHHHhCCCC---ceEeCCCCC----------------------------
Q 013467 337 LMRLMEGEH-VG-PFNLGNPGEFTMLELAQVVQETIDPNA---KIEFRPNTE---------------------------- 383 (442)
Q Consensus 337 i~~~l~~~~-~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~---~~~~~~~~~---------------------------- 383 (442)
+..+++.+. .| +||+++++++++.|+++.+.+.+|.+. .+...|...
T Consensus 232 i~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (657)
T PRK07201 232 LDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVATQLGIPPEV 311 (657)
T ss_pred HHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHHhcCCCHHH
Confidence 999988654 34 999999999999999999999999876 322222110
Q ss_pred --CCCCccccChHHHHHhh---CCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 384 --DDPHKRKPDISRAKELL---GWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 384 --~~~~~~~~d~~k~~~~L---G~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
.......+|++++++.| |++.. .+++.+...+++|.+++..
T Consensus 312 l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 312 LDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLDP 357 (657)
T ss_pred HHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCCh
Confidence 01123477999999988 66665 7899999999999887643
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=224.38 Aligned_cols=278 Identities=20% Similarity=0.266 Sum_probs=202.3
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC-CCCEEEEecccCCCCc-c
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL-EVDQIYHLACPASPVH-Y 196 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~Vih~A~~~~~~~-~ 196 (442)
|+|||||||||++|+.+|.+.||+|++++|+......... ..+. ..+..++... ++|+|||+||...... |
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~-----~~v~--~~~~~~~~~~~~~DavINLAG~~I~~rrW 73 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH-----PNVT--LWEGLADALTLGIDAVINLAGEPIAERRW 73 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC-----cccc--ccchhhhcccCCCCEEEECCCCccccccC
Confidence 6899999999999999999999999999997654443321 1222 3333334344 7999999999766554 6
Q ss_pred cCC-hhHHHHHhHHHHHHHHHHHHHcC--C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 013467 197 KFN-PVKTIKTNVVGTLNMLGLAKRVG--A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272 (442)
Q Consensus 197 ~~~-~~~~~~~nv~gt~~ll~~a~~~g--~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (442)
... .+...+..+..|..|.++..+.. + .||.-|.++.||+..+..++|+. +... .--++.-..=|.....
T Consensus 74 t~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~-----~~g~-~Fla~lc~~WE~~a~~ 147 (297)
T COG1090 74 TEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES-----PPGD-DFLAQLCQDWEEEALQ 147 (297)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC-----CCCC-ChHHHHHHHHHHHHhh
Confidence 554 55678889999999999987543 4 68888888899999999999982 2221 1111111122333333
Q ss_pred HHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-CccEEe
Q 013467 273 YHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPFNL 351 (442)
Q Consensus 273 ~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g~~~i 351 (442)
+ +..|.+++++|.|.|.|+. +.++..+......+-.-+ +|+|+++++|||++|++++|.++++++. .|+||+
T Consensus 148 a-~~~gtRvvllRtGvVLs~~-----GGaL~~m~~~fk~glGG~-~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~ 220 (297)
T COG1090 148 A-QQLGTRVVLLRTGVVLSPD-----GGALGKMLPLFKLGLGGK-LGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFNL 220 (297)
T ss_pred h-hhcCceEEEEEEEEEecCC-----CcchhhhcchhhhccCCc-cCCCCceeeeeeHHHHHHHHHHHHhCcCCCCcccc
Confidence 2 4568999999999999974 556666665555543333 5899999999999999999999999976 589999
Q ss_pred cCCCccCHHHHHHHHHHHhCCCCceEeCCCC----CC-----CCCccccChHHHHHhhCCCccc-CHHHHHHHHHH
Q 013467 352 GNPGEFTMLELAQVVQETIDPNAKIEFRPNT----ED-----DPHKRKPDISRAKELLGWEPKV-SLRKGLPKMVK 417 (442)
Q Consensus 352 ~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~----~~-----~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~~~ 417 (442)
++|.+++..+|.+.+.++++++..+.....- .. -......-+.|+.+ .||+.++ +++++|.+.+.
T Consensus 221 taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 221 TAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred cCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 9999999999999999999987665432110 00 11122345677766 8999988 79998887764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=231.89 Aligned_cols=250 Identities=23% Similarity=0.280 Sum_probs=181.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCc--cccccc-----c-----CCCceeEEeccccccc------
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRK--ENVMHH-----F-----GNPNFELIRHDVVEPL------ 177 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~--~~~~~~-----~-----~~~~v~~~~~D~~~~~------ 177 (442)
+|+|||||||||++++++|+++| .+|++++|...... +.+... + ...++.++.+|+.++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 57999999643211 011000 0 0147888999976542
Q ss_pred -----cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 178 -----LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 178 -----~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
..++|+|||+|+... +...+..+.++|+.++.+++++|.+.++ +||++||.++|+.....+..|+......
T Consensus 81 ~~~~~~~~~d~vih~a~~~~---~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~ 157 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN---WVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTP 157 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec---cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccc
Confidence 346999999998643 3345677888999999999999999887 7999999999976443333343221111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCc--cCCCchHHHHHHHHHcCCCcEEecCCc-eeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC--IDDGRVVSNFVAQALRKEPLTVYGDGK-QTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 328 (442)
.....+.|+.+|+.+|.+++++.+. |++++++|||.++|+... .....++..++......+. +++.. ...+|+
T Consensus 158 ~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~ 233 (367)
T TIGR01746 158 PPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGA---YPDSPELTEDLT 233 (367)
T ss_pred ccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCC---CCCCCccccCcc
Confidence 2233468999999999999887654 899999999999997431 1122334444444443332 22333 357899
Q ss_pred CHHHHHHHHHHHHcCCC----CccEEecCCCccCHHHHHHHHHHHhCCCCc
Q 013467 329 FVSDLVEGLMRLMEGEH----VGPFNLGNPGEFTMLELAQVVQETIDPNAK 375 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~----~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~ 375 (442)
|++|++++++.++..+. .++||+++++++++.|+++.+.+ .|.+.+
T Consensus 234 ~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 234 PVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 99999999999988765 34999999999999999999998 776654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=229.54 Aligned_cols=235 Identities=22% Similarity=0.269 Sum_probs=181.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc--cccc-cCCCceeEEecccccc-----ccC----C
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN--VMHH-FGNPNFELIRHDVVEP-----LLL----E 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~--~~~~-~~~~~v~~~~~D~~~~-----~~~----~ 180 (442)
...+++|+|||||||||++++++|+++|++|++++|........ .... ....+++++.+|+.+. .+. +
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 34567999999999999999999999999999999965332110 0000 0124678889998765 233 5
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+|+||||++.... .....+++|+.++.+++++|++.|+ +||++||..+++ + ...|
T Consensus 137 ~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~----------------p---~~~~ 192 (390)
T PLN02657 137 VDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK----------------P---LLEF 192 (390)
T ss_pred CcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC----------------c---chHH
Confidence 9999999874221 1224467899999999999999997 899999987752 1 2458
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE-eccCHHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR-SFQFVSDLVEGLM 338 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~Dva~ai~ 338 (442)
..+|...|..++. +..+++++|+||+++||+. ..++..+..++++.++++++..+ +++|++|+|++++
T Consensus 193 ~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~---------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~ 261 (390)
T PLN02657 193 QRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL---------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIA 261 (390)
T ss_pred HHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc---------HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHH
Confidence 8999999998865 3468999999999999752 33455667788888888887654 6899999999999
Q ss_pred HHHcCCC--CccEEecCC-CccCHHHHHHHHHHHhCCCCceEeCCCC
Q 013467 339 RLMEGEH--VGPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRPNT 382 (442)
Q Consensus 339 ~~l~~~~--~g~~~i~~~-~~~s~~dl~~~l~~~~g~~~~~~~~~~~ 382 (442)
.++.++. .++||++++ +.+|+.|+++.+.+.+|.+.++...|.+
T Consensus 262 ~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~ 308 (390)
T PLN02657 262 DCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQ 308 (390)
T ss_pred HHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHH
Confidence 9997653 349999986 6899999999999999998877765543
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=221.47 Aligned_cols=239 Identities=27% Similarity=0.355 Sum_probs=175.3
Q ss_pred EEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCcccccc---ccCCCceeE----Eecccccc-----ccC--CCCE
Q 013467 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMH---HFGNPNFEL----IRHDVVEP-----LLL--EVDQ 183 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~---~~~~~~v~~----~~~D~~~~-----~~~--~~d~ 183 (442)
||||||+|.||+.|+++|++.+ .++++++|+....-....+ .....++.+ +-+|+.+. .+. ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 7999999999999999999998 4899999863322111111 112233433 46787665 445 7999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
|||+|++-...-.+.++.+.+++|+.||.|++++|.+.++ +||++||.- ...|.+.||.|
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK-------------------Av~PtnvmGat 141 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK-------------------AVNPTNVMGAT 141 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG-------------------CSS--SHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-------------------cCCCCcHHHHH
Confidence 9999998776667788999999999999999999999998 999999964 34456999999
Q ss_pred HHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 263 KRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 263 K~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
|+.+|.++..+.... +.+++++|.|||.|. .+++++.|..++.+|+++.+ .+.+..+-|+.+++.++.++.
T Consensus 142 KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS-----~GSVip~F~~Qi~~g~PlTv-T~p~mtRffmti~EAv~Lvl~ 215 (293)
T PF02719_consen 142 KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGS-----RGSVIPLFKKQIKNGGPLTV-TDPDMTRFFMTIEEAVQLVLQ 215 (293)
T ss_dssp HHHHHHHHHHHCCTSSSS--EEEEEEE-EETTG-----TTSCHHHHHHHHHTTSSEEE-CETT-EEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEEecceecC-----CCcHHHHHHHHHHcCCccee-CCCCcEEEEecHHHHHHHHHH
Confidence 999999999987755 689999999999995 48999999999999999986 567888999999999999999
Q ss_pred HHcCCCCc-cEEecCCCccCHHHHHHHHHHHhCC------CCceEeCCCC
Q 013467 340 LMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDP------NAKIEFRPNT 382 (442)
Q Consensus 340 ~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~------~~~~~~~~~~ 382 (442)
+......| +|.+--|+++++.|+++.+.+.+|. ++++.+....
T Consensus 216 a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlR 265 (293)
T PF02719_consen 216 AAALAKGGEIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLR 265 (293)
T ss_dssp HHHH--TTEEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----
T ss_pred HHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCC
Confidence 98876666 8988889999999999999999974 4555655433
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=225.57 Aligned_cols=233 Identities=27% Similarity=0.359 Sum_probs=200.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc---cccccccCCCceeEEecccccc-----ccCC--CC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK---ENVMHHFGNPNFELIRHDVVEP-----LLLE--VD 182 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d 182 (442)
..+|+|+||||+|-+|+.+++++++.+. ++++++|+..+.. ..+...+...++.++-+|+.|. ++.+ +|
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 4678999999999999999999999975 7888887543221 1222222346777888888775 4555 99
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHH
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
+|+|+|+.-...-.+.++.+.+++|+.||.|++++|.+.|+ +||++||. ...+|.+.||.
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD-------------------KAV~PtNvmGa 388 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD-------------------KAVNPTNVMGA 388 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC-------------------cccCCchHhhH
Confidence 99999998877778899999999999999999999999998 99999996 35566699999
Q ss_pred HHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
||+.+|..+..+.++. +-+++++|.|||.|.+ +++++.|..++.+|+++++ .+++..+-|..+.|.++.++
T Consensus 389 TKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-----GSViPlFk~QI~~GgplTv-Tdp~mtRyfMTI~EAv~LVl 462 (588)
T COG1086 389 TKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPEAVQLVL 462 (588)
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-----CCCHHHHHHHHHcCCCccc-cCCCceeEEEEHHHHHHHHH
Confidence 9999999999997743 3889999999999964 8999999999999999985 68889999999999999999
Q ss_pred HHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhC
Q 013467 339 RLMEGEHVG-PFNLGNPGEFTMLELAQVVQETID 371 (442)
Q Consensus 339 ~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g 371 (442)
.+......| +|.+-.|+++++.|+++.+-+.+|
T Consensus 463 qA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 463 QAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 999988777 899999999999999999999997
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=243.87 Aligned_cols=263 Identities=20% Similarity=0.254 Sum_probs=188.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEE-EeCCCCCCccccccccCCCceeEEecccccccc--CCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIV-VDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL--LEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~-l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~Vih~A~~ 190 (442)
...|+||||||+||||++|++.|.++|++|.. ..+ +.+.+.....+ .++|+|||+|+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~-------------------l~d~~~v~~~i~~~~pd~Vih~Aa~ 438 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGR-------------------LEDRSSLLADIRNVKPTHVFNAAGV 438 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEeeccc-------------------cccHHHHHHHHHhhCCCEEEECCcc
Confidence 34579999999999999999999999999842 211 11111111222 268999999997
Q ss_pred CCC---CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCC------CCCCCCCCCCCCCCCCCCCChhHH
Q 013467 191 ASP---VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP------LQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 191 ~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~------~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
... ..++.++...+++|+.++.+|+++|++.|+++|++||..+|+.. ...++.|++ .+..+.+.|+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Yg~ 514 (668)
T PLN02260 439 TGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFYSK 514 (668)
T ss_pred cCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChhhH
Confidence 642 23355788899999999999999999999988899998898642 123667763 22223488999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l 341 (442)
+|+++|.+++.+. ++.++|+.++||.+.. .. .+|+..+++.......+ .+..+++|++.+++.++
T Consensus 515 sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~-~~----~nfv~~~~~~~~~~~vp-----~~~~~~~~~~~~~~~l~ 579 (668)
T PLN02260 515 TKAMVEELLREYD-----NVCTLRVRMPISSDLS-NP----RNFITKISRYNKVVNIP-----NSMTVLDELLPISIEMA 579 (668)
T ss_pred HHHHHHHHHHhhh-----hheEEEEEEecccCCC-Cc----cHHHHHHhccceeeccC-----CCceehhhHHHHHHHHH
Confidence 9999999998863 4578888888865321 11 34555555544322122 24677889999988888
Q ss_pred cCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEe-----CC--CCCCCCCccccChHHHHHhhCCCcccCHHHHHHH
Q 013467 342 EGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEF-----RP--NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414 (442)
Q Consensus 342 ~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~-----~~--~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~ 414 (442)
+.+..|+||+++++.+||.|+++.+.+.++....+.. .+ ....++.. .+|++|+++.+|+ +. +|+++|.+
T Consensus 580 ~~~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~~-~~~~~l~~ 656 (668)
T PLN02260 580 KRNLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-LL-SIKESLIK 656 (668)
T ss_pred HhCCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-cc-chHHHHHH
Confidence 7655689999999999999999999998853321111 11 12234444 8999999998999 75 89999998
Q ss_pred HHH
Q 013467 415 MVK 417 (442)
Q Consensus 415 ~~~ 417 (442)
++.
T Consensus 657 ~~~ 659 (668)
T PLN02260 657 YVF 659 (668)
T ss_pred HHh
Confidence 875
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=232.60 Aligned_cols=249 Identities=21% Similarity=0.319 Sum_probs=180.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc----cCCCCEEEEecccCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL----LLEVDQIYHLACPAS 192 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~Vih~A~~~~ 192 (442)
|+|+||||+||||++++++|+++|++|++++|.... . ...+++++.+|+.+.. +.++|+|||+|+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~----~----~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD----A----LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh----c----ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 589999999999999999999999999999985321 0 1246788888887753 357999999998531
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (442)
. . ...+|+.++.|++++|++.|+++||+||. +|.+ ..|. .+|.++.+
T Consensus 73 ~-----~---~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~-------------------~~~~----~aE~ll~~ 119 (699)
T PRK12320 73 S-----A---PGGVGITGLAHVANAAARAGARLLFVSQA--AGRP-------------------ELYR----QAETLVST 119 (699)
T ss_pred c-----c---hhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCC-------------------cccc----HHHHHHHh
Confidence 1 1 12489999999999999999999999986 3321 0122 36666543
Q ss_pred HHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEec
Q 013467 273 YHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 352 (442)
Q Consensus 273 ~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~ 352 (442)
.+++++++|++++|||+......+++..++...++++++ .++|++|++++++.+++.+..|+||++
T Consensus 120 ----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI----------~vIyVdDvv~alv~al~~~~~GiyNIG 185 (699)
T PRK12320 120 ----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI----------RVLHLDDLVRFLVLALNTDRNGVVDLA 185 (699)
T ss_pred ----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce----------EEEEHHHHHHHHHHHHhCCCCCEEEEe
Confidence 468999999999999975433345666666555444433 348999999999999988767899999
Q ss_pred CCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhccc
Q 013467 353 NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDH 427 (442)
Q Consensus 353 ~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~~~ 427 (442)
+++.+|+.|+++.+.... +...+. ...+......|...++..++|+|+..|+. .+.++++-..+.+++
T Consensus 186 ~~~~~Si~el~~~i~~~~-p~~~~~----~~~~~~~~~pdi~~a~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~ 253 (699)
T PRK12320 186 TPDTTNVVTAWRLLRSVD-PHLRTR----RVRSWEQLIPEVDIAAVQEDWNFEFGWQA--TEAIVDTGRGLVGRR 253 (699)
T ss_pred CCCeeEHHHHHHHHHHhC-CCcccc----ccccHHHhCCCCchhhhhcCCCCcchHHH--HHHHHhhcccccccc
Confidence 999999999999887762 222221 22334456778888888899999987764 234444433333333
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-26 Score=215.22 Aligned_cols=213 Identities=24% Similarity=0.290 Sum_probs=128.3
Q ss_pred EEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCC--ccccccc---------c---CCCceeEEecccccccc------
Q 013467 121 VTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGR--KENVMHH---------F---GNPNFELIRHDVVEPLL------ 178 (442)
Q Consensus 121 VtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~--~~~~~~~---------~---~~~~v~~~~~D~~~~~~------ 178 (442)
|||||||||++|+++|++++. +|+++.|..... .+.+... . ...++.++.+|+.++.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999987 999999965321 1111111 1 15789999999988643
Q ss_pred -----CCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCC-----CCC
Q 013467 179 -----LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKE-----TYW 247 (442)
Q Consensus 179 -----~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E-----~~~ 247 (442)
.++|+|||+||. ..+..++..+.++|+.||.+|++.|.+.+. +|+|+||..+.+..... ..| ...
T Consensus 81 ~~~L~~~v~~IiH~Aa~---v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~-~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAAS---VNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGT-IEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS----SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT---SSS-HHH--
T ss_pred hhccccccceeeecchh---hhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCc-ccccccccccc
Confidence 359999999986 445567778889999999999999997664 99999995555443322 211 111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCc--cCCCchHHHHHHHHHcCCCcE-EecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC--IDDGRVVSNFVAQALRKEPLT-VYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 324 (442)
.........+.|.+||+.+|++++++.++.|++++|+|||.|+|.... .+...++..++......+.++ ..++....
T Consensus 157 ~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 236 (249)
T PF07993_consen 157 DLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDAR 236 (249)
T ss_dssp EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT
T ss_pred cchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCce
Confidence 111233445799999999999999998888999999999999994322 223343444444444433343 44454556
Q ss_pred EeccCHHHHHHHH
Q 013467 325 RSFQFVSDLVEGL 337 (442)
Q Consensus 325 ~~~v~v~Dva~ai 337 (442)
.++++||.+|++|
T Consensus 237 ~d~vPVD~va~aI 249 (249)
T PF07993_consen 237 LDLVPVDYVARAI 249 (249)
T ss_dssp --EEEHHHHHHHH
T ss_pred EeEECHHHHHhhC
Confidence 9999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=214.82 Aligned_cols=245 Identities=22% Similarity=0.237 Sum_probs=175.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc--cccc---------cccCCCceeEEecccccccc------
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK--ENVM---------HHFGNPNFELIRHDVVEPLL------ 178 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~--~~~~---------~~~~~~~v~~~~~D~~~~~~------ 178 (442)
++||+||||||+|.+++.+|+.+-. +|+|++|...... +.+. ......++.++.+|+.++.+
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 4799999999999999999999865 9999999654111 1111 11234688999999976533
Q ss_pred -----CCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCC----CCCCCCC
Q 013467 179 -----LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHP----QKETYWG 248 (442)
Q Consensus 179 -----~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~----~~E~~~~ 248 (442)
..+|+|||+|+. ++|..++....+.|+.||..+++.|..... .|+|+||++|+....... ..|.+..
T Consensus 81 ~~~La~~vD~I~H~gA~---Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAAL---VNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecchh---hcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 359999999986 667888999999999999999999998776 599999999986543322 2222222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCc--cCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC--IDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
........++|++|||++|.+++++.+. |++++|+|||+|.|+... .+...++..|+..+++-+..+ +.....+
T Consensus 158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P---~~~~~~~ 233 (382)
T COG3320 158 RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP---DSEYSLD 233 (382)
T ss_pred ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC---Ccccchh
Confidence 2234445689999999999999999877 999999999999998762 344556777777766654443 3334445
Q ss_pred ccCHHHHHHHH-----------HHHHcCCCC--ccEE-ecCCCccCHHHHHHHHHH
Q 013467 327 FQFVSDLVEGL-----------MRLMEGEHV--GPFN-LGNPGEFTMLELAQVVQE 368 (442)
Q Consensus 327 ~v~v~Dva~ai-----------~~~l~~~~~--g~~~-i~~~~~~s~~dl~~~l~~ 368 (442)
.++++++++++ ..+...+.. ..|+ ..-|..+.+.++.+.+.+
T Consensus 234 ~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 234 MLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred hCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 55544444443 333332222 2444 233888999999999888
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=219.48 Aligned_cols=253 Identities=17% Similarity=0.181 Sum_probs=179.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCc--cccc-cc-------------------cCCCceeE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRK--ENVM-HH-------------------FGNPNFEL 168 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~--~~~~-~~-------------------~~~~~v~~ 168 (442)
.++++|||||||||||++|++.|++.+. +|+++.|...... +.+. .. +...++.+
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 4678999999999999999999998764 7899999643221 1110 00 01346888
Q ss_pred Eeccccccc-----------cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCcccc
Q 013467 169 IRHDVVEPL-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYG 235 (442)
Q Consensus 169 ~~~D~~~~~-----------~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~ 235 (442)
+.+|+.++. ..++|+|||+|+... +..++...+++|+.|+.+++++|++.+ . +|||+||.++||
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~---f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG 273 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT---FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNG 273 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc---cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeec
Confidence 999997752 246999999998654 345688889999999999999999875 4 799999999998
Q ss_pred CCCCCCCCCCCCCC----------------------------------C--------------------CCCCCCChhHH
Q 013467 236 DPLQHPQKETYWGN----------------------------------V--------------------NPIGVRSCYDE 261 (442)
Q Consensus 236 ~~~~~~~~E~~~~~----------------------------------~--------------------~~~~~~~~Y~~ 261 (442)
...+ .+.|..+.. . ...+-.+.|..
T Consensus 274 ~~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~ 352 (605)
T PLN02503 274 QRQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF 352 (605)
T ss_pred CCCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHH
Confidence 7532 233322210 0 00122488999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC-----CCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
+|..+|.++++.. .+++++|+||+.|.+....+- +.......+....+|.-...+++++...++|+||.|+.+
T Consensus 353 TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna 430 (605)
T PLN02503 353 TKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNA 430 (605)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHH
Confidence 9999999999764 379999999999943211110 011111122222233323366888999999999999999
Q ss_pred HHHHHcC----C--CCccEEecCC--CccCHHHHHHHHHHHhCC
Q 013467 337 LMRLMEG----E--HVGPFNLGNP--GEFTMLELAQVVQETIDP 372 (442)
Q Consensus 337 i~~~l~~----~--~~g~~~i~~~--~~~s~~dl~~~l~~~~g~ 372 (442)
++.++.. . ...+||++++ ++++|.++.+.+.+.+..
T Consensus 431 ~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 431 TLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 9998431 1 1249999988 899999999999987753
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=237.65 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=181.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC----CeEEEEeCCCCCCcc--ccccc---------cCCCceeEEeccccccc--
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG----DSVIVVDNFFTGRKE--NVMHH---------FGNPNFELIRHDVVEPL-- 177 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g----~~V~~l~r~~~~~~~--~~~~~---------~~~~~v~~~~~D~~~~~-- 177 (442)
.+++|+|||||||||++++++|++++ ++|+++.|....... .+... ....++.++.+|+.++.
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35799999999999999999999987 799999986432111 01000 01136888889986442
Q ss_pred ---------cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCC---------
Q 013467 178 ---------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL--------- 238 (442)
Q Consensus 178 ---------~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~--------- 238 (442)
..++|+|||+|+... +......+...|+.|+.+++++|.+.++ +|+|+||.++|+...
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec---CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 346999999998643 4445666667899999999999998886 899999999986321
Q ss_pred ---CCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCC
Q 013467 239 ---QHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKE 313 (442)
Q Consensus 239 ---~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~ 313 (442)
...+.|+.+....+....+.|+++|+.+|.++..+.+ .|++++++|||+|||++... +...++..++......
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~- 1204 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQL- 1204 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHh-
Confidence 1234444332223334457899999999999998765 48999999999999986431 1223344444333222
Q ss_pred CcEEecCCceeEeccCHHHHHHHHHHHHcCCCC----ccEEecCCCccCHHHHHHHHHHHhCCCC
Q 013467 314 PLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV----GPFNLGNPGEFTMLELAQVVQETIDPNA 374 (442)
Q Consensus 314 ~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~----g~~~i~~~~~~s~~dl~~~l~~~~g~~~ 374 (442)
..++++...++|++|+|++++++.++.++.. .+||++++..+++.++++.+.+. |.+.
T Consensus 1205 --~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~ 1266 (1389)
T TIGR03443 1205 --GLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDV 1266 (1389)
T ss_pred --CCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCC
Confidence 2234555678999999999999999876532 28999999999999999999764 5443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=199.21 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=165.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----ccc------CC-CCEEE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLL------LE-VDQIY 185 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~------~~-~d~Vi 185 (442)
+|+||||||+||++++++|+++|++|++++|+...... .+++.+.+|..+ .++ .+ +|.|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~--------~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG--------PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC--------CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 48999999999999999999999999999997543211 233344445444 344 56 99999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
|+++... + ......+++++|+++|+ +||++||..++.. +..+.
T Consensus 73 ~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~-----------------------~~~~~ 116 (285)
T TIGR03649 73 LVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG-----------------------GPAMG 116 (285)
T ss_pred EeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC-----------------------CchHH
Confidence 9986321 0 12345689999999998 9999998765311 00122
Q ss_pred HHHHHHHHHHhh-cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 265 TAETLTMDYHRG-AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 265 ~~E~~v~~~~~~-~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
..|..+ ++ .|++++++||+++++... . ..+...+.....+. .+.++...+|++++|+|++++.++.+
T Consensus 117 ~~~~~l----~~~~gi~~tilRp~~f~~~~~----~---~~~~~~~~~~~~~~-~~~g~~~~~~v~~~Dva~~~~~~l~~ 184 (285)
T TIGR03649 117 QVHAHL----DSLGGVEYTVLRPTWFMENFS----E---EFHVEAIRKENKIY-SATGDGKIPFVSADDIARVAYRALTD 184 (285)
T ss_pred HHHHHH----HhccCCCEEEEeccHHhhhhc----c---cccccccccCCeEE-ecCCCCccCcccHHHHHHHHHHHhcC
Confidence 334433 34 389999999998885421 0 00111222223333 45677889999999999999999987
Q ss_pred CCC--ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCC--------CC----------------CccccChHHHH
Q 013467 344 EHV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED--------DP----------------HKRKPDISRAK 397 (442)
Q Consensus 344 ~~~--g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~--------~~----------------~~~~~d~~k~~ 397 (442)
+.. +.|++++++.+|+.|+++.+.+.+|++..+...+.... .+ .........++
T Consensus 185 ~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 264 (285)
T TIGR03649 185 KVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVKNGAEVRLNDVVK 264 (285)
T ss_pred CCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCccccccchHH
Confidence 643 48999999999999999999999999877655443210 00 00111355566
Q ss_pred HhhCCCcccCHHHHHHHHHH
Q 013467 398 ELLGWEPKVSLRKGLPKMVK 417 (442)
Q Consensus 398 ~~LG~~p~~~l~e~l~~~~~ 417 (442)
+.+|.+|+ ++++.+++..+
T Consensus 265 ~~~G~~p~-~~~~~~~~~~~ 283 (285)
T TIGR03649 265 AVTGSKPR-GFRDFAESNKA 283 (285)
T ss_pred HHhCcCCc-cHHHHHHHhhh
Confidence 77888887 88887776543
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=173.72 Aligned_cols=296 Identities=21% Similarity=0.263 Sum_probs=221.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cC------CCceeEEecccccccc-------CCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FG------NPNFELIRHDVVEPLL-------LEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~------~~~v~~~~~D~~~~~~-------~~~d 182 (442)
+..||||-||.=|++|++.|+..|++|..+.|+...-+....++ .. .....+.-+|++|... .+.+
T Consensus 29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikPt 108 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKPT 108 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCch
Confidence 47899999999999999999999999999988765443222221 11 2356777888887522 3578
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC----CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG----ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g----~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
-|+|+|+........+-++-..++...|+..||++.+..+ +||...||+..||...+.|.+|. .|+.|.++
T Consensus 109 EiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFyPRSP 183 (376)
T KOG1372|consen 109 EVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFYPRSP 183 (376)
T ss_pred hhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCCCCCh
Confidence 9999999866544444455566788999999999998775 59999999999999999999999 89999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHH----cC-CCcEEecCCceeEeccCHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL----RK-EPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~v~v~Dv 333 (442)
|+.+|..+-.++..+.+.+++-.+ -|.+|.....-...+|+..-+.+.+ -| ..-...|+.+..++|-|..|-
T Consensus 184 Ya~aKmy~~WivvNyREAYnmfAc---NGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dY 260 (376)
T KOG1372|consen 184 YAAAKMYGYWIVVNYREAYNMFAC---NGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDY 260 (376)
T ss_pred hHHhhhhheEEEEEhHHhhcceee---ccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHH
Confidence 999999999888888666655433 3445543222233444444333322 22 223346788889999999999
Q ss_pred HHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEe-----------------CCCC---CCCCCccccCh
Q 013467 334 VEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEF-----------------RPNT---EDDPHKRKPDI 393 (442)
Q Consensus 334 a~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~-----------------~~~~---~~~~~~~~~d~ 393 (442)
.+++..+++++...-|.|+.++..|.+||++.-...+|.....+- .++. +.......-|.
T Consensus 261 VEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~LqGda 340 (376)
T KOG1372|consen 261 VEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTLQGDA 340 (376)
T ss_pred HHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhhcCCh
Confidence 999999999999999999999999999999999888885433220 0111 11112345589
Q ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHH
Q 013467 394 SRAKELLGWEPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 394 ~k~~~~LG~~p~~~l~e~l~~~~~~~~ 420 (442)
+|+++.|||+|++++++-+++|+..-.
T Consensus 341 sKAk~~LgW~pkv~f~eLVkeMv~~Di 367 (376)
T KOG1372|consen 341 SKAKKTLGWKPKVTFPELVKEMVASDI 367 (376)
T ss_pred HHHHHhhCCCCccCHHHHHHHHHHhHH
Confidence 999999999999999999999987543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=182.03 Aligned_cols=223 Identities=17% Similarity=0.203 Sum_probs=152.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------cc-CCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LL-LEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~-~~~d~Vih 186 (442)
..+|+|+||||+|+||+.++++|+++|++|+++.|.......... ...++.++.+|+.+. .+ .++|+|||
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~ 91 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAVIC 91 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEEEE
Confidence 346799999999999999999999999999999886432111111 123678888887652 23 47999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
+++..... ++...+++|..++.++++++++.++ +||++||.++|+.....+..+.+ ....+...|...|..
T Consensus 92 ~~g~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~----~~~~~~~~~~~~k~~ 163 (251)
T PLN00141 92 ATGFRRSF----DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAY----IFLNLFGLTLVAKLQ 163 (251)
T ss_pred CCCCCcCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcch----hHHHHHHHHHHHHHH
Confidence 98753211 2223346899999999999999887 99999999999754332222210 011122334566888
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
+|.+++ +.|+++++|||+++++.... + .+..........++++.+|+|++++.++.++.
T Consensus 164 ~e~~l~----~~gi~~~iirpg~~~~~~~~----------------~-~~~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~ 222 (251)
T PLN00141 164 AEKYIR----KSGINYTIVRPGGLTNDPPT----------------G-NIVMEPEDTLYEGSISRDQVAEVAVEALLCPE 222 (251)
T ss_pred HHHHHH----hcCCcEEEEECCCccCCCCC----------------c-eEEECCCCccccCcccHHHHHHHHHHHhcChh
Confidence 877664 45899999999999975320 1 11111111122468999999999999998876
Q ss_pred C--ccEEecC---CCccCHHHHHHHHHH
Q 013467 346 V--GPFNLGN---PGEFTMLELAQVVQE 368 (442)
Q Consensus 346 ~--g~~~i~~---~~~~s~~dl~~~l~~ 368 (442)
. .++.+++ +...++.+++..+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 223 SSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred hcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 4 3677775 334788888877654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-21 Score=181.50 Aligned_cols=230 Identities=16% Similarity=0.163 Sum_probs=161.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~V 184 (442)
++|+||||+||||++++++|+++|++|++++|+..... .+... ...++.++.+|+.+.. ..++|+|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALD-DLKAR-YGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHh-ccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 58999999999999999999999999999998532211 11111 1236788888887642 2358999
Q ss_pred EEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||+||........ +.+...+++|+.++.++++++ ++.+. +||++||..... +...
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~ 144 (276)
T PRK06482 81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------------AYPG 144 (276)
T ss_pred EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc----------------CCCC
Confidence 9999975433221 235668889999999999987 55555 899999975431 1123
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCce---eCCCCccCC-----CchHHHHHHHHHcCCCcEEecCCcee
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNT---YGPRMCIDD-----GRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v---~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+.|+.+|+..|.+++.+.++ .|++++++|||.+ ||++..... .......+...+..+.+.+
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 217 (276)
T PRK06482 145 FSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAI------- 217 (276)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCC-------
Confidence 468999999999999988765 5999999999988 655432110 0111112222222222221
Q ss_pred EeccCHHHHHHHHHHHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPN 373 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~ 373 (442)
+.+++|++++++.++..+..+ .||++++...+..|+++.+.+..+..
T Consensus 218 --~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 265 (276)
T PRK06482 218 --PGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALEAQ 265 (276)
T ss_pred --CCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999876544 89999998888888887777766543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-20 Score=173.00 Aligned_cols=215 Identities=15% Similarity=0.139 Sum_probs=147.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc------------cCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+++|+||||+||||++++++|+++|++|++++|+.....+.....+ ....+.++.+|+.+.. +.+
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGR 85 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999986433222221111 1235778888887642 235
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|+|||+||......+. ..++..+++|+.++.++++++... +..++++++.... .+
T Consensus 86 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 149 (249)
T PRK09135 86 LDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE----------------RP 149 (249)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc----------------CC
Confidence 89999999965432211 235678899999999999998642 2356666653211 24
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
..+...|+.+|...|.+++.+.++. +++++++|||+++|+... ..+...+......+.++. .+.++
T Consensus 150 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~ 217 (249)
T PRK09135 150 LKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDG---NSFDEEARQAILARTPLK---------RIGTP 217 (249)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccc---ccCCHHHHHHHHhcCCcC---------CCcCH
Confidence 4455789999999999999988764 699999999999999742 112222222333332221 22358
Q ss_pred HHHHHHHHHHHcCCC--Cc-cEEecCCCccC
Q 013467 331 SDLVEGLMRLMEGEH--VG-PFNLGNPGEFT 358 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~--~g-~~~i~~~~~~s 358 (442)
+|+++++..++.... .| +|++.++..++
T Consensus 218 ~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 218 EDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred HHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 999999977665432 34 89999887654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=168.54 Aligned_cols=177 Identities=29% Similarity=0.439 Sum_probs=133.8
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccCCC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPASP 193 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~~~ 193 (442)
|+|+||||++|+.++++|+++|++|+++.|+.....+ ..+++++.+|+.+. ++.++|+|||+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7999999999999999999999999999996443222 56889999998765 56799999999974221
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (442)
+...+.+++++|+++|+ +||++||.++|.........+. .+ ....|...|..+|++++
T Consensus 74 -------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~e~~~~- 132 (183)
T PF13460_consen 74 -------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDED-----KP--IFPEYARDKREAEEALR- 132 (183)
T ss_dssp -------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGT-----CG--GGHHHHHHHHHHHHHHH-
T ss_pred -------------cccccccccccccccccccceeeeccccCCCCCccccccc-----cc--chhhhHHHHHHHHHHHH-
Confidence 27888999999999998 9999999999875433211111 01 11568899988888773
Q ss_pred HHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 273 YHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 273 ~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
+.+++++++||+.+||+... ...+ ....+....++|+.+|+|++++.++++
T Consensus 133 ---~~~~~~~ivrp~~~~~~~~~--~~~~---------------~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 133 ---ESGLNWTIVRPGWIYGNPSR--SYRL---------------IKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp ---HSTSEEEEEEESEEEBTTSS--SEEE---------------ESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred ---hcCCCEEEEECcEeEeCCCc--ceeE---------------EeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 45899999999999998531 1111 011334456999999999999998864
|
... |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=173.92 Aligned_cols=219 Identities=16% Similarity=0.059 Sum_probs=148.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++++++||||+|+||++++++|+++|++|++++|+.....+...... ....+.++.+|+.+.. ..++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999999986532222111110 1235677889987642 1348
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHH----HHHHHHHH-HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVG----TLNMLGLA-KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~g----t~~ll~~a-~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||....... .+.++..+++|+.+ +.++++.+ ++.+. +||++||...+.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~---------------- 149 (262)
T PRK13394 86 DILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE---------------- 149 (262)
T ss_pred CEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC----------------
Confidence 999999997543221 12355678899999 66677777 66665 999999975431
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCC-----cEEecCCce
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP-----LTVYGDGKQ 323 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 323 (442)
+......|+.+|...+.+++.++++ .+++++++|||.++++... ..+....... +.. ..+++.+..
T Consensus 150 ~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 223 (262)
T PRK13394 150 ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVD----KQIPEQAKEL--GISEEEVVKKVMLGKTV 223 (262)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhh----hhhHhhhhcc--CCChHHHHHHHHhcCCC
Confidence 1122367999999999999888765 4899999999999997531 0111110000 000 001122334
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+|++++|+++++..++..+. .| .|++.++.
T Consensus 224 ~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 224 DGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGW 259 (262)
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCce
Confidence 5689999999999999997653 24 67777653
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=170.73 Aligned_cols=213 Identities=16% Similarity=0.109 Sum_probs=150.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++|+|+||||+|+||++++++|+++|++|+++.|......+...... ...++.++.+|+.+.. +.+
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 84 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999999999888775443222222111 1245788888886542 236
Q ss_pred CCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||+||...... ..+.+...+++|+.++.++++.+ ++.+. +||++||...+..
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~--------------- 149 (249)
T PRK12825 85 IDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG--------------- 149 (249)
T ss_pred CCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC---------------
Confidence 899999999654322 12235677899999999998887 45565 9999999876522
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|...+.+++.++++ .|++++++|||.++|+.... ......... .. ......++
T Consensus 150 -~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~---~~~~~~~~~----~~------~~~~~~~~ 215 (249)
T PRK12825 150 -WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEA---TIEEAREAK----DA------ETPLGRSG 215 (249)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccc---ccchhHHhh----hc------cCCCCCCc
Confidence 122367999999999999887665 58999999999999986421 111111110 00 01123489
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+.+|+++++..++..+. .| .|+++++..
T Consensus 216 ~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~ 247 (249)
T PRK12825 216 TPEDIARAVAFLCSDASDYITGQVIEVTGGVD 247 (249)
T ss_pred CHHHHHHHHHHHhCccccCcCCCEEEeCCCEe
Confidence 99999999999997653 34 899987754
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=171.05 Aligned_cols=216 Identities=19% Similarity=0.146 Sum_probs=148.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++||||||+|+||++++++|+++|++|++++|+.... +.+...+ ...++.++.+|+.+.. +.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGA-EAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 35899999999999999999999999999999864321 1121111 1235778888887652 3468
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+|+....... .......+..|+.++..+++.+ ++.+. +||++||...+..
T Consensus 80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~---------------- 143 (255)
T TIGR01963 80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA---------------- 143 (255)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC----------------
Confidence 999999986543221 1224566789999988888776 55565 8999999765422
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE-------EecCCc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT-------VYGDGK 322 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 322 (442)
......|+.+|...+.+++.++.+ .+++++++||+.++++.. ...+.......... ....+.
T Consensus 144 ~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
T TIGR01963 144 SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLV--------EKQIADQAKTRGIPEEQVIREVMLPGQ 215 (255)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHH--------HHHHHhhhcccCCCchHHHHHHHHccC
Confidence 112367999999999999887654 389999999999998742 11111111111110 011233
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
...++++++|+|++++.++.++. .| .|++.++..
T Consensus 216 ~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 216 PTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred ccccCcCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 55689999999999999997642 34 788876643
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=183.54 Aligned_cols=224 Identities=14% Similarity=0.088 Sum_probs=150.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc----------cCCCceeEEecccccc-----ccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH----------FGNPNFELIRHDVVEP-----LLL 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~----------~~~~~v~~~~~D~~~~-----~~~ 179 (442)
++++|+||||+|+||++++++|+++|++|++++|+........... ....++.++.+|+.+. .+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 4578999999999999999999999999999998644322111000 0113578888998764 467
Q ss_pred CCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 180 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
++|+|||++|.... ...++...+++|+.|+.+++++|++.|+ +||++||.+++... ..+. .......
T Consensus 159 giDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----~p~~------~~~sk~~ 226 (576)
T PLN03209 159 NASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----FPAA------ILNLFWG 226 (576)
T ss_pred CCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----cccc------chhhHHH
Confidence 89999999985421 1123556678999999999999999997 99999998763111 0011 1122356
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
|...|..+|..+. ..|++|++||||+++++....... ..+............+..+|||++++
T Consensus 227 ~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~t-------------~~v~~~~~d~~~gr~isreDVA~vVv 289 (576)
T PLN03209 227 VLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKET-------------HNLTLSEEDTLFGGQVSNLQVAELMA 289 (576)
T ss_pred HHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccccc-------------cceeeccccccCCCccCHHHHHHHHH
Confidence 7778888887764 468999999999999874311000 11111111112234578899999999
Q ss_pred HHHcCCCC---ccEEecCCCccCHHHHHHHHH
Q 013467 339 RLMEGEHV---GPFNLGNPGEFTMLELAQVVQ 367 (442)
Q Consensus 339 ~~l~~~~~---g~~~i~~~~~~s~~dl~~~l~ 367 (442)
+++.++.. .+|.+.++......++.+.+.
T Consensus 290 fLasd~~as~~kvvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 290 CMAKNRRLSYCKVVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred HHHcCchhccceEEEEEeCCCCCCCCHHHHHH
Confidence 99997652 389998865433344444444
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=170.03 Aligned_cols=227 Identities=13% Similarity=0.109 Sum_probs=156.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
+++|+||||+|+||++++++|+++|++|++++|+..... ...... ...+.++.+|+.+.. +.++|+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLA-DLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999999999998643211 111111 235677788886641 236899
Q ss_pred EEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||+||........ +++.+.+++|+.++..+++.+ ++.+. ++|++||...+.. ..
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~----------------~~ 144 (275)
T PRK08263 81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA----------------FP 144 (275)
T ss_pred EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC----------------CC
Confidence 99999976543222 346778999999988887765 55555 8999999776532 12
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-----CchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-----GRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
....|+.+|+..+.+++.++.+ .|++++++|||.+..+...... .............. .....
T Consensus 145 ~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 215 (275)
T PRK08263 145 MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQ---------WSERS 215 (275)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHH---------HHhcc
Confidence 2367999999999998888765 5899999999988765431000 00011111111110 11123
Q ss_pred c-cCHHHHHHHHHHHHcCCCC-ccEEecC-CCccCHHHHHHHHHHH
Q 013467 327 F-QFVSDLVEGLMRLMEGEHV-GPFNLGN-PGEFTMLELAQVVQET 369 (442)
Q Consensus 327 ~-v~v~Dva~ai~~~l~~~~~-g~~~i~~-~~~~s~~dl~~~l~~~ 369 (442)
+ +.++|++++++.+++.+.. +.|.+.+ +..+++.++.+.+.+.
T Consensus 216 ~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 216 VDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 4 7899999999999998765 3455544 4678888988888775
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=166.12 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=145.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE-ELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 44568999999999999999999999999999988543211 111111 1235677888887642 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+|||+||........ +.+...+++|+.++.++++.+. +.+. +||++||...+..
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~-------------- 152 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQ-------------- 152 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCC--------------
Confidence 689999999965432221 2345667999999999988864 3333 8999999876632
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|.+.|.+++.++++. |++++++|||.+.++.........+..++..... ++ ......+
T Consensus 153 --~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~ 223 (274)
T PRK07775 153 --RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------WG-QARHDYF 223 (274)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------hc-ccccccc
Confidence 1123579999999999999987654 8999999999875542110011111122211111 11 1123568
Q ss_pred cCHHHHHHHHHHHHcCCCCc-cEEec
Q 013467 328 QFVSDLVEGLMRLMEGEHVG-PFNLG 352 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~g-~~~i~ 352 (442)
++++|+|++++.+++++..+ +||+.
T Consensus 224 ~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 224 LRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred cCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 99999999999999887544 67775
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=164.85 Aligned_cols=214 Identities=19% Similarity=0.107 Sum_probs=148.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++|+|+||||+|+||.+++++|+++|++|++++|+............ ...++.++.+|+.+.. +..+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999999986432111111111 1235788888887641 1368
Q ss_pred CEEEEecccCCCC----cccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPV----HYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+++..... ....++...++.|+.++.++++.+. +.+. +||++||...++. +
T Consensus 85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~---------------~ 149 (251)
T PRK12826 85 DILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV---------------G 149 (251)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc---------------C
Confidence 9999999875542 1223456788999999999998873 4444 8999999876511 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...+.+++.+..+ .|++++++|||+++|+........ .+........+ ...+++
T Consensus 150 ~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~ 217 (251)
T PRK12826 150 YPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA---QWAEAIAAAIP---------LGRLGE 217 (251)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch---HHHHHHHhcCC---------CCCCcC
Confidence 222367999999999999888665 489999999999999864211111 11111222211 125889
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
++|+|+++..++..+. .| +|++.+|.
T Consensus 218 ~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 218 PEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred HHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 9999999999887653 34 88887654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=166.77 Aligned_cols=231 Identities=17% Similarity=0.082 Sum_probs=156.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~ 178 (442)
+++++|+||||+|+||++++++|+++|++|++++|............. ...++.++.+|+.+.. +
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 345799999999999999999999999999999986432211111100 1235777888886641 1
Q ss_pred CCCCEEEEecccCCCC-c----ccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+|||+||..... . ..+.+...+++|+.++.++++++.+ .+. +||++||...+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 151 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN------------- 151 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC-------------
Confidence 2689999999854221 1 1123566788999999999887644 233 899999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+....+.|+.+|.+.|.+++.+.++. ++++++||||.+.++....... ............ ...
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~~~---------~~~ 217 (276)
T PRK05875 152 ---THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE--SPELSADYRACT---------PLP 217 (276)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc--CHHHHHHHHcCC---------CCC
Confidence 22234789999999999999987654 7999999999987764311000 011111111111 123
Q ss_pred eccCHHHHHHHHHHHHcCCCC---c-cEEecCCCcc----CHHHHHHHHHHHhC
Q 013467 326 SFQFVSDLVEGLMRLMEGEHV---G-PFNLGNPGEF----TMLELAQVVQETID 371 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~~---g-~~~i~~~~~~----s~~dl~~~l~~~~g 371 (442)
.+.+++|+++++.+++.++.. | ++++.++..+ ++.|+++.+....+
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 218 RVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 467799999999999987642 4 8999888776 66777766655443
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=172.97 Aligned_cols=216 Identities=16% Similarity=0.081 Sum_probs=150.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++++||||||+|+||++++++|+++|++|++++|......+...... ...++.++.+|+.+.. ..++
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999986432222111111 1235777889987641 1258
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHH----HHHcC-------CeEEEeecCccccCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVG-------ARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~----a~~~g-------~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
|+||||||........ +.+...+++|+.++.+++++ +.+.+ .++|++||...+..
T Consensus 85 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------- 154 (287)
T PRK06194 85 HLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA---------- 154 (287)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC----------
Confidence 9999999976543222 33556789999999997776 34332 27999999876532
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
......|+.+|.+.|.+++.+..+. ++++.++.||.+..+- .....+++..+++++
T Consensus 155 ------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~-------------~~~~~~~~~~~~~~~ 215 (287)
T PRK06194 155 ------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI-------------WQSERNRPADLANTA 215 (287)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc-------------ccccccCchhcccCc
Confidence 1223679999999999999887754 3666677776654432 122234455566777
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPN 373 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~ 373 (442)
.+.+++++++|+...+.... .++..|+++.+.+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~--------------~~s~~dva~~i~~~~~~~ 253 (287)
T PRK06194 216 PPTRSQLIAQAMSQKAVGSG--------------KVTAEEVAQLVFDAIRAG 253 (287)
T ss_pred cccchhhHHHHHHHhhhhcc--------------CCCHHHHHHHHHHHHHcC
Confidence 78889999999887764321 178999999998877543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=170.56 Aligned_cols=220 Identities=17% Similarity=0.173 Sum_probs=151.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
.+++++||||+|+||.+++++|+++|++|++++|+..... .....+ ...+.++.+|+.+.. +..+|
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR-LAALEI-GPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4568999999999999999999999999999998643222 111111 235778888886641 23689
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc------CCeEEEeecCc-cccCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV------GARFLLTSTSE-VYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~------g~r~i~iSS~~-vy~~~~~~~~~E~~~~~~~ 251 (442)
+|||+||....... .++++..+++|+.++.++++++... +.+||++||.. .++
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 146 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG---------------- 146 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC----------------
Confidence 99999986533221 2346678999999999999988532 24899999964 322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHc---CCCcEEecCCceeE
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR---KEPLTVYGDGKQTR 325 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 325 (442)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.++++.... . ...+..... +.....++......
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (257)
T PRK07067 147 -EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQ----V-DALFARYENRPPGEKKRLVGEAVPLG 220 (257)
T ss_pred -CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhh----h-hhhhhhccCCCHHHHHHHHhhcCCCC
Confidence 123467999999999999888764 58999999999999874210 0 011100000 00001122333456
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
.+.+++|+|+++++++..+. .| +|++.+|+.++
T Consensus 221 ~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 221 RMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred CccCHHHHHHHHHHHhCcccccccCcEEeecCCEeCC
Confidence 78999999999999998653 24 89998876543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=165.82 Aligned_cols=216 Identities=16% Similarity=0.061 Sum_probs=144.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++++|+||||+|+||++++++|+++|++|++++|+............ ...++.++.+|+.+.. ..++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV 82 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999986443222111110 1246778888887642 1368
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHH----HHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLG----LAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~----~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+|+........ ......+++|+.++.++++ .+++.+. +||++||...+. +
T Consensus 83 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~----------------~ 146 (258)
T PRK12429 83 DILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV----------------G 146 (258)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc----------------C
Confidence 9999999865443222 2345577899999555544 4455565 899999976542 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHc--CCCc-----EEecCCc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR--KEPL-----TVYGDGK 322 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~ 322 (442)
....+.|+.+|.+.+.+++.++.+ .++++.++|||.++++.... .+..... +.+. ..+....
T Consensus 147 ~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (258)
T PRK12429 147 SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK--------QIPDLAKERGISEEEVLEDVLLPLV 218 (258)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh--------hhhhhccccCCChHHHHHHHHhccC
Confidence 223477999999999888877654 48999999999999875310 0111000 0000 0011222
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+++++|+|+++..++.... .| .|++.+|
T Consensus 219 ~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 219 PQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred CccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 34579999999999999987643 24 6777655
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=168.72 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=145.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
+++|+||||+|+||++++++|+++|++|++++|+.... +.+... ...++.++.+|+.+.. +.++|+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~ 81 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR-ADFEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGPIDV 81 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH-HHHHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 56899999999999999999999999999999864321 111111 1235677888886642 125899
Q ss_pred EEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||+||......... .+...+++|+.++.++++++. +.+. +||++||...+.. ..
T Consensus 82 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~----------------~~ 145 (277)
T PRK06180 82 LVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLIT----------------MP 145 (277)
T ss_pred EEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCC----------------CC
Confidence 999999754322222 245678999999999998853 3444 8999999765421 12
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC---CCchHHHH---HHHHHcCCCcEEecCCceeE
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID---DGRVVSNF---VAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 325 (442)
+...|+.+|...|.+++.++.+ .|++++++|||.+.++..... ....+..+ ........ .. ....
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~ 219 (277)
T PRK06180 146 GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR-EA-----KSGK 219 (277)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH-Hh-----hccC
Confidence 3367999999999999888765 489999999999977532100 00111111 11110000 00 0112
Q ss_pred eccCHHHHHHHHHHHHcCCCCccEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~~ 357 (442)
.+..++|+|++++.+++.+.....++.+++..
T Consensus 220 ~~~~~~dva~~~~~~l~~~~~~~~~~~g~~~~ 251 (277)
T PRK06180 220 QPGDPAKAAQAILAAVESDEPPLHLLLGSDAL 251 (277)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCeeEeccHHHH
Confidence 45679999999999999887665555554443
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=168.16 Aligned_cols=222 Identities=14% Similarity=0.100 Sum_probs=149.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---ccCCCceeEEeccccccc-----------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HFGNPNFELIRHDVVEPL-----------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~-----------~~~~ 181 (442)
+++++||||+|+||++++++|+++|++|++++|+.....+.... .....++.++.+|+.+.. +.++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 46899999999999999999999999999999864322211111 001246788888887642 2358
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+||........ +.+.+.+++|+.++.++++.+ ++.+. +||++||...+. +
T Consensus 83 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~ 146 (280)
T PRK06914 83 DLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV----------------G 146 (280)
T ss_pred eEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC----------------C
Confidence 9999999875533222 235567889999998888875 55555 899999965331 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccC---------CCchHHHHHHHHHcCCCcEEecC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCID---------DGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
..+...|+.+|...+.+++.++. ..|++++++|||.+.++..... .......++..+.... .
T Consensus 147 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 220 (280)
T PRK06914 147 FPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI-----N- 220 (280)
T ss_pred CCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH-----h-
Confidence 22336799999999999988763 4589999999999988742110 0011111111111100 0
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCCCc-cEEecCCCccCHH
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTML 360 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~~g-~~~i~~~~~~s~~ 360 (442)
.....+++++|+|++++.+++++..+ .|++.++..+++.
T Consensus 221 -~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 221 -SGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred -hhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence 11235788999999999999988665 6777766555444
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=162.15 Aligned_cols=213 Identities=18% Similarity=0.142 Sum_probs=144.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+.. .......+ ....+.++.+|+.+.. +.
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL--VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH--HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 34679999999999999999999999999999998531 11111111 1234667788876631 23
Q ss_pred CCCEEEEecccCCC-C----cccCChhHHHHHhHHHHHHHHH----HHHHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-V----HYKFNPVKTIKTNVVGTLNMLG----LAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~----~~~~~~~~~~~~nv~gt~~ll~----~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||.... . ....++...+++|+.++..+++ .+++.+. +||++||...++.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------- 150 (260)
T PRK12823 84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------------- 150 (260)
T ss_pred CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-------------
Confidence 68999999985321 1 1122356678899988775554 4445555 8999999876531
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCc---------cCCCchHHHHHHHHHcCCCcEE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMC---------IDDGRVVSNFVAQALRKEPLTV 317 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 317 (442)
....|+.+|++.+.+++.++.+. |+++.+|+||++++|... ......+..+......+.++.
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (260)
T PRK12823 151 -----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMK- 224 (260)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcc-
Confidence 11469999999999999988765 899999999999997310 001122333433333333322
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+.+++|+++++++++.... .| .+++.+++
T Consensus 225 --------~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 225 --------RYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred --------cCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 34468999999999887652 35 77776653
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-18 Score=160.79 Aligned_cols=225 Identities=14% Similarity=0.075 Sum_probs=156.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
+++++||||+|+||+.++++|+++|++|++++|+..... .....+...++.++.+|+.+.. +.++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALA-AFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 358999999999999999999999999999998643221 1212222345778888886642 125899
Q ss_pred EEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||++|........ +.+...+.+|+.++.++++++ .+.+. +||++||...+.. .
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------------~ 143 (257)
T PRK07074 81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA-----------------L 143 (257)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-----------------C
Confidence 99999865432221 123456779999998888877 33454 8999999653311 0
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++++. |+++.+++||+++++........ ...+....... ....+|++++
T Consensus 144 ~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~ 213 (257)
T PRK07074 144 GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAA-NPQVFEELKKW---------YPLQDFATPD 213 (257)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccccc-ChHHHHHHHhc---------CCCCCCCCHH
Confidence 11469999999999999988654 79999999999988753111000 01222222111 1235799999
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCCCccCHHHHHHHHHH
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNPGEFTMLELAQVVQE 368 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~~dl~~~l~~ 368 (442)
|++++++.++.... .| .+++.++......|+++.+.+
T Consensus 214 d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 214 DVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred HHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 99999999996532 35 677888889999999988754
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=165.36 Aligned_cols=219 Identities=15% Similarity=0.143 Sum_probs=146.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++++||||+||||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+.. +.+
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999999999999999886432222111111 1235677888887642 135
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
+|+|||+|+.... ...++...+++|+.++.++++++.+. +.++|++||........ .+. .+ ...
T Consensus 85 ~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~~-----~~--~~~ 151 (248)
T PRK07806 85 LDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VKT-----MP--EYE 151 (248)
T ss_pred CcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----ccC-----Cc--ccc
Confidence 8999999985321 22345567789999999999999864 23899999965321110 011 11 146
Q ss_pred hhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHH
Q 013467 258 CYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 334 (442)
.|+.+|.+.|.+++.++.+ .++++.+++|+.+-++.. ..+......+ ... ........+++++|++
T Consensus 152 ~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~--------~~~~~~~~~~-~~~--~~~~~~~~~~~~~dva 220 (248)
T PRK07806 152 PVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVT--------ATLLNRLNPG-AIE--ARREAAGKLYTVSEFA 220 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchh--------hhhhccCCHH-HHH--HHHhhhcccCCHHHHH
Confidence 8999999999999998764 489999999987766531 1111000000 000 0001123689999999
Q ss_pred HHHHHHHcCCC-Cc-cEEecCCCcc
Q 013467 335 EGLMRLMEGEH-VG-PFNLGNPGEF 357 (442)
Q Consensus 335 ~ai~~~l~~~~-~g-~~~i~~~~~~ 357 (442)
++++.+++.+. .| +|++.+++.+
T Consensus 221 ~~~~~l~~~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 221 AEVARAVTAPVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHHHhhccccCccEEEecCccce
Confidence 99999998764 45 7999887654
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=161.90 Aligned_cols=212 Identities=14% Similarity=0.073 Sum_probs=147.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++|+||||+|+||++++++|+++|++|++++|............+ ...++.++.+|+.+.. +..+|
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID 82 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999999999999999986432222211111 1235788889987742 23689
Q ss_pred EEEEecccCCCCc------ccCChhHHHHHhHHHHHHHHHHHHHc-----C-----C-eEEEeecCccccCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH------YKFNPVKTIKTNVVGTLNMLGLAKRV-----G-----A-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 183 ~Vih~A~~~~~~~------~~~~~~~~~~~nv~gt~~ll~~a~~~-----g-----~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+|||+||...... ....++..+++|+.++.++++++... + . +||++||...+.
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 152 (256)
T PRK12745 83 CLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM---------- 152 (256)
T ss_pred EEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc----------
Confidence 9999998643211 11345667899999999998887432 1 3 699999976542
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.|.+++.++.+ .|+++++++||.+.++... .+...+......+ ..
T Consensus 153 ------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~----~~~~~~~~~~~~~-~~------- 214 (256)
T PRK12745 153 ------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTA----PVTAKYDALIAKG-LV------- 214 (256)
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccc----ccchhHHhhhhhc-CC-------
Confidence 1223367999999999999998765 5899999999999987531 1112221111111 11
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
....+.+..|+++++..++.... .| .|++.++..
T Consensus 215 ~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 215 PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGLS 252 (256)
T ss_pred CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCee
Confidence 12357789999999999886542 35 888887644
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=164.62 Aligned_cols=217 Identities=15% Similarity=0.096 Sum_probs=151.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-ccccccc--CCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHF--GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~--~~~~v~~~~~D~~~~------------~~ 178 (442)
.++|+|+||||+|+||++++++|+++|++|++.++...... +.....+ ...++.++.+|+.+. .+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999998876532211 1111111 123567788888764 12
Q ss_pred CCCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|+||||||...... ..+++...+++|+.++.++++++... +.+||++||...|..
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 198 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP-------------- 198 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC--------------
Confidence 36899999999643211 12347778999999999999998753 348999999887632
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|.+.+.+++.++++ .|+++.+|+||++.++.... .......+..+.... ....+
T Consensus 199 --~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~--~~~~~~~~~~~~~~~---------p~~r~ 265 (300)
T PRK06128 199 --SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPS--GGQPPEKIPDFGSET---------PMKRP 265 (300)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCccc--CCCCHHHHHHHhcCC---------CCCCC
Confidence 122356999999999999998776 48999999999999985321 111122222222211 12246
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
...+|++.++++++.... .| .+++.+|..+
T Consensus 266 ~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 266 GQPVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 678999999999887643 24 7888877543
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=162.07 Aligned_cols=217 Identities=15% Similarity=-0.004 Sum_probs=146.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.+++|+||||+|+||++++++|+++|++|++..|............. ...++.++.+|+.+.. +.+
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV 84 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence 35699999999999999999999999999887764322211111111 1124567777876542 246
Q ss_pred CCEEEEecccCCCCccc-C---ChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK-F---NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~-~---~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|+|||+||........ . ..+..+.+|+.++.++++++.+. +.+||++||...+. +.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~ 148 (252)
T PRK06077 85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR----------------PA 148 (252)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------------CC
Confidence 89999999964432221 1 23567899999999999888653 23899999987662 33
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
.+.+.|+.+|...|.+++.++++. ++++.+++||.+.++.... .............. .......+++++
T Consensus 149 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 219 (252)
T PRK06077 149 YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGES-LFKVLGMSEKEFAE--------KFTLMGKILDPE 219 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHh-hhhcccccHHHHHH--------hcCcCCCCCCHH
Confidence 345789999999999999988765 7899999999998763200 00000000000111 011123689999
Q ss_pred HHHHHHHHHHcCCC-Cc-cEEecCCCc
Q 013467 332 DLVEGLMRLMEGEH-VG-PFNLGNPGE 356 (442)
Q Consensus 332 Dva~ai~~~l~~~~-~g-~~~i~~~~~ 356 (442)
|+|++++.++..+. .| .|++.++..
T Consensus 220 dva~~~~~~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 220 EVAEFVAAILKIESITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHhCccccCCCeEEecCCee
Confidence 99999999997654 34 899887754
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=163.17 Aligned_cols=217 Identities=17% Similarity=0.101 Sum_probs=144.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+.........++.++.+|+.+.. +.++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3567999999999999999999999999999999864322221111112245788889987642 1368
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||++|........ +.+...+.+|+.++.++.+.+ ++.+. +||++||...+. +
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------------~ 146 (252)
T PRK06138 83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA----------------G 146 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc----------------C
Confidence 9999999975433222 234556889999987766654 45554 899999976431 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCch-HHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRV-VSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++.+. |++++++|||+++++......... ....+....... .....++
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 218 (252)
T PRK06138 147 GRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR--------HPMNRFG 218 (252)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc--------CCCCCCc
Confidence 1223679999999999999987665 899999999999987531000000 001111111110 1122478
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+++|++++++.++.++. .| .+.+.++
T Consensus 219 ~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 219 TAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred CHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 89999999999998764 35 4555433
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=161.08 Aligned_cols=217 Identities=15% Similarity=0.086 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+. ..++.++.+|+.+.. +.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAA-AAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 346799999999999999999999999999999986432211 111111 234777888887641 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----CC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.+|+|||+||........ +.+++.+.+|+.++.++++++.+. +. ++|++||....
T Consensus 87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~---------------- 150 (255)
T PRK07523 87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA---------------- 150 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc----------------
Confidence 589999999975433222 234667889999999999988643 44 89999997543
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.++|||.+.++....... ...+...+.... ....+
T Consensus 151 ~~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~--~~~~~~~~~~~~---------~~~~~ 219 (255)
T PRK07523 151 LARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA--DPEFSAWLEKRT---------PAGRW 219 (255)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc--CHHHHHHHHhcC---------CCCCC
Confidence 12223467999999999999988763 58999999999999875311000 011111111111 12346
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
..++|+|++++.++..+. .| .+++.++..++
T Consensus 220 ~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 220 GKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred cCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 779999999999997643 35 77887775443
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=158.97 Aligned_cols=217 Identities=16% Similarity=0.094 Sum_probs=145.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.....+..........+.++.+|+.+.. ..++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 3456999999999999999999999999999999975322211111111235778888887642 1358
Q ss_pred CEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+|||++|...... ..+.++..+++|+.++.++++.+. +.+. +||++||...+.
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 146 (251)
T PRK07231 83 DILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR---------------- 146 (251)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC----------------
Confidence 99999998643222 122356788999999877777664 3444 899999987653
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|...+.+++.++.+. ++++++++||.+.++............+....... .....++
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 217 (251)
T PRK07231 147 PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT---------IPLGRLG 217 (251)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC---------CCCCCCc
Confidence 22334679999999999998887643 89999999999876542100000000111111111 1223578
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+++|+|.+++.++..+. .| .+.+.++.
T Consensus 218 ~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 218 TPEDIANAALFLASDEASWITGVTLVVDGGR 248 (251)
T ss_pred CHHHHHHHHHHHhCccccCCCCCeEEECCCc
Confidence 99999999999997653 35 45555543
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=161.42 Aligned_cols=232 Identities=15% Similarity=0.067 Sum_probs=150.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++.+|+.+...+ ....+ ...++.++.+|+.+.. +.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~-~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQ-AVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 346689999999999999999999999999999886432221 11111 1235677888887642 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||........ +.++..+++|+.++.++++++. +.+ .++|++||...+.
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~-------------- 148 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV-------------- 148 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc--------------
Confidence 589999999975433222 2356678999999999988864 343 3899999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+.+.++.+ .|+++++++||.+.++.... ..................+......+
T Consensus 149 --~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (275)
T PRK05876 149 --PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN----SERIRGAACAQSSTTGSPGPLPLQDD 222 (275)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc----hhhhcCcccccccccccccccccccc
Confidence 2233478999999866666665543 48999999999988764210 00000000000111112233334567
Q ss_pred ccCHHHHHHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHh
Q 013467 327 FQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETI 370 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~ 370 (442)
+++++|+|++++.++.++. .+.+. +...+..+...+.+..
T Consensus 223 ~~~~~dva~~~~~ai~~~~--~~~~~--~~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 223 NLGVDDIAQLTADAILANR--LYVLP--HAASRASIRRRFERID 262 (275)
T ss_pred CCCHHHHHHHHHHHHHcCC--eEEec--ChhhHHHHHHHHHHHH
Confidence 8999999999999998653 33333 3445555555555443
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=160.59 Aligned_cols=211 Identities=21% Similarity=0.189 Sum_probs=148.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||++++++|+++|++|++++|...... .....+ ....+.++.+|+.+.. +.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAE-RVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999999999998643221 111111 1235667788887652 135
Q ss_pred CCEEEEecccCCCC-------cccCChhHHHHHhHHHHHHHHHHHHHc----C-CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV-------HYKFNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 181 ~d~Vih~A~~~~~~-------~~~~~~~~~~~~nv~gt~~ll~~a~~~----g-~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+|+|||+||..... ...+.+.+.+.+|+.++.++++++... + .+||++||...|.
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 150 (250)
T PRK07774 84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------- 150 (250)
T ss_pred CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-------------
Confidence 89999999964321 111235567889999999999888643 2 3899999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+.+.|+.+|++.|.+++.+.++. |+++++++||.+..+.... .....+.....++.+..
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~---~~~~~~~~~~~~~~~~~--------- 212 (250)
T PRK07774 151 ------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRT---VTPKEFVADMVKGIPLS--------- 212 (250)
T ss_pred ------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccc---cCCHHHHHHHHhcCCCC---------
Confidence 12579999999999999987764 7999999999988765321 11122333344433222
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+..++|++++++.++.... .| +|++.++..+
T Consensus 213 ~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 213 RMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQII 248 (250)
T ss_pred CCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeec
Confidence 24568999999999987642 34 8999887654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=158.18 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=146.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +..
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE-ALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999999998643221 111111 1235778888887642 234
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||++|....... .+.+...++.|+.++.++++.+. +.+. +||++||.....
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~---------------- 146 (246)
T PRK05653 83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT---------------- 146 (246)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc----------------
Confidence 7999999986543211 12345678899999999988874 4555 999999975431
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+..+...|+.+|...+.+++.++++ .+++++++||+.++++... .+............ ....++
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~ 213 (246)
T PRK05653 147 GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE----GLPEEVKAEILKEI---------PLGRLG 213 (246)
T ss_pred CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh----hhhHHHHHHHHhcC---------CCCCCc
Confidence 1223367999999999999888664 4899999999999997631 11111111111111 124678
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+++|+++++..++.... .| .|++++|.
T Consensus 214 ~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 214 QPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred CHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 89999999999987532 24 78888764
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=159.37 Aligned_cols=211 Identities=17% Similarity=0.148 Sum_probs=145.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++++||||+|+||++++++|+++|++|+++.+......+.....+ ...++.++.+|+.+.. +..
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK 84 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 35699999999999999999999999999877654322222221111 1235788889987642 234
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cC-CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||+||........ ..+...+++|+.++.++++++.. .+ .+||++||...+..
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 149 (247)
T PRK12935 85 VDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAG--------------- 149 (247)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCC---------------
Confidence 89999999975433221 34667889999999999988863 33 38999999654311
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.+..+. ++++++++||.+.++... ............+ .....+.
T Consensus 150 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~----~~~~~~~~~~~~~---------~~~~~~~ 215 (247)
T PRK12935 150 -GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVA----EVPEEVRQKIVAK---------IPKKRFG 215 (247)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhh----hccHHHHHHHHHh---------CCCCCCc
Confidence 1123679999999999888876654 899999999999875321 1111111122221 1234678
Q ss_pred CHHHHHHHHHHHHcCC--CCc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGE--HVG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~--~~g-~~~i~~~ 354 (442)
+++|++++++.+++.. ..| .|++.++
T Consensus 216 ~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 216 QADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred CHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 9999999999998765 234 8888876
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=162.04 Aligned_cols=204 Identities=15% Similarity=0.138 Sum_probs=141.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~~ 180 (442)
++|+|+||||+|+||++++++|+++|++|++++|+.... +.....+. ..++.++..|+.+.. +.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERL-DEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 457999999999999999999999999999999864321 22222111 235678888886642 236
Q ss_pred CCEEEEecccCCCC-----cccCChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||+||..... ...+.+...+++|+.++..+++++... +.+||++||...+.
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~---------------- 146 (258)
T PRK07890 83 VDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH---------------- 146 (258)
T ss_pred ccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc----------------
Confidence 89999999864331 112346778999999999999988642 23899999976542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-------CchHHHHHHHHHcCCCcEEecCC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-------GRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
+......|+.+|...+.+++.++.+ .++++.+++||.++++...... ..-...+.......
T Consensus 147 ~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (258)
T PRK07890 147 SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN--------- 217 (258)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---------
Confidence 2223467999999999999998765 3899999999999998531000 00001111111111
Q ss_pred ceeEeccCHHHHHHHHHHHHcCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
.....+.+++|++++++.++...
T Consensus 218 ~~~~~~~~~~dva~a~~~l~~~~ 240 (258)
T PRK07890 218 SDLKRLPTDDEVASAVLFLASDL 240 (258)
T ss_pred CCccccCCHHHHHHHHHHHcCHh
Confidence 12234778999999999988753
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=161.31 Aligned_cols=219 Identities=20% Similarity=0.161 Sum_probs=144.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++++||||+|+||++++++|+++|++|++++|+..... .........++.++.+|+.++. +.++|
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 88 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALA-ATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD 88 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 4569999999999999999999999999999998643221 1212122225677888887642 23689
Q ss_pred EEEEecccCCCC-----cccCChhHHHHHhHHHHHHHHHHHH----HcCC--eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLAK----RVGA--RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 183 ~Vih~A~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|||+||..... ...+.+...++.|+.++.++++++. ..+. +|+++||.....
T Consensus 89 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~---------------- 152 (264)
T PRK12829 89 VLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL---------------- 152 (264)
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc----------------
Confidence 999999965221 1122457789999999999888773 3333 577777754321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEe----cCCcee
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY----GDGKQT 324 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 324 (442)
+......|+.+|...|.+++.++.+ .+++++++|||+++|+... ......... .+.....+ ......
T Consensus 153 ~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 226 (264)
T PRK12829 153 GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMR----RVIEARAQQ--LGIGLDEMEQEYLEKISL 226 (264)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHH----HHhhhhhhc--cCCChhHHHHHHHhcCCC
Confidence 1122356999999999999888765 3899999999999998531 111100000 00000000 000112
Q ss_pred EeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 325 RSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
..+++++|+++++..++... ..| .|++.++..
T Consensus 227 ~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 227 GRMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 35899999999999988643 234 788887654
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=159.49 Aligned_cols=212 Identities=15% Similarity=0.095 Sum_probs=143.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-eCCCCCCcccccccc--CCCceeEEecccccccc-------------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-DNFFTGRKENVMHHF--GNPNFELIRHDVVEPLL------------- 178 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------- 178 (442)
++++|+||||+|+||++++++|+++|++|+++ .|... ..+.....+ ....+.++.+|+.+...
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQ-AADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999876 44321 111111111 12357788888876421
Q ss_pred -----CCCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHc--C-CeEEEeecCccccCCCCCCCCCCC
Q 013467 179 -----LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 -----~~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~--g-~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.++|+|||+||........+ .....+++|+.++.++++++.+. . .+||++||..++.
T Consensus 84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~----------- 152 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL----------- 152 (254)
T ss_pred cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC-----------
Confidence 25899999999754432222 24567789999999999988753 2 3899999987763
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.|.+++.++++ .++++++++||.++++........ ..+ ....... ..
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~--~~~-~~~~~~~--------~~ 216 (254)
T PRK12746 153 -----GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD--PEI-RNFATNS--------SV 216 (254)
T ss_pred -----CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC--hhH-HHHHHhc--------CC
Confidence 2223367999999999998888764 489999999999988742100000 111 1111111 11
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+++++|+++++..++.++. .| .|++.++
T Consensus 217 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 217 FGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred cCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 2356789999999998887653 34 7888765
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=155.37 Aligned_cols=211 Identities=17% Similarity=0.129 Sum_probs=144.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------cCCCCEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--------LLEVDQI 184 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 184 (442)
..++++++||||+|+||+++++.|+++|++|++++|+.+... .+.. ...+.++.+|+.+.. ..++|+|
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~-~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALD-RLAG---ETGCEPLRLDVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH---HhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 345679999999999999999999999999999998543211 1111 113456777776542 2358999
Q ss_pred EEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc----C--CeEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~----g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
||+||....... ..+++..+.+|+.++.++++++.+. + .+||++||...+. +..
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 145 (245)
T PRK07060 82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV----------------GLP 145 (245)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC----------------CCC
Confidence 999986433211 1235667889999999999887542 3 3899999977552 122
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.|.+++.++++ .+++++++|||.++++.....-.. ......+... .....+++++
T Consensus 146 ~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~ 214 (245)
T PRK07060 146 DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD--PQKSGPMLAA---------IPLGRFAEVD 214 (245)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC--HHHHHHHHhc---------CCCCCCCCHH
Confidence 3367999999999999998765 389999999999998753110000 0111111111 1123588999
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
|++++++.++..+. .| .+++.+|
T Consensus 215 d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 215 DVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred HHHHHHHHHcCcccCCccCcEEeECCC
Confidence 99999999998653 24 6666554
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=168.78 Aligned_cols=249 Identities=18% Similarity=0.145 Sum_probs=171.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC---CeEEEEeCCCCCCccc--ccccc--------------CCCceeEEeccccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG---DSVIVVDNFFTGRKEN--VMHHF--------------GNPNFELIRHDVVE 175 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g---~~V~~l~r~~~~~~~~--~~~~~--------------~~~~v~~~~~D~~~ 175 (442)
++++|+|||||||+|+.+++.|++.- -+|+.+.|...+.... +.... ...++..+.+|+.+
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~ 90 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISE 90 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccC
Confidence 45689999999999999999999874 2888998865443211 11110 12456667777765
Q ss_pred cc-----------cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCC
Q 013467 176 PL-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 176 ~~-----------~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~ 242 (442)
+. ..++|+|||+||- ..+.+........|..||+++++.|++... -|+|+|++.+.. ....+
T Consensus 91 ~~LGis~~D~~~l~~eV~ivih~AAt---vrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~--~~~~i 165 (467)
T KOG1221|consen 91 PDLGISESDLRTLADEVNIVIHSAAT---VRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNC--NVGHI 165 (467)
T ss_pred cccCCChHHHHHHHhcCCEEEEeeee---eccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheec--ccccc
Confidence 42 3469999999985 445566777888999999999999999874 799999987652 11111
Q ss_pred CCCCCC--------------------------CCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc
Q 013467 243 KETYWG--------------------------NVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296 (442)
Q Consensus 243 ~E~~~~--------------------------~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~ 296 (442)
.|..+. +.---+..+.|.-+|+.+|.++.+.+ .+++++|+||+.|......+
T Consensus 166 ~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP 243 (467)
T KOG1221|consen 166 EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEP 243 (467)
T ss_pred cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCC
Confidence 111110 00001235889999999999998865 46999999999999875433
Q ss_pred CCCchHHH------HHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc-----CCC--CccEEecCC--CccCHHH
Q 013467 297 DDGRVVSN------FVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-----GEH--VGPFNLGNP--GEFTMLE 361 (442)
Q Consensus 297 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~-----~~~--~g~~~i~~~--~~~s~~d 361 (442)
-.++ +++ ++-..-+|.--....+.+...++++||.|+.+++.+.. .+. ..+||++++ ++++|.+
T Consensus 244 ~pGW-idn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~ 322 (467)
T KOG1221|consen 244 FPGW-IDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGD 322 (467)
T ss_pred CCCc-cccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHH
Confidence 2222 111 11111222222345677788899999999999887652 122 239999874 5899999
Q ss_pred HHHHHHHHhC
Q 013467 362 LAQVVQETID 371 (442)
Q Consensus 362 l~~~l~~~~g 371 (442)
+.+...+.+.
T Consensus 323 ~~e~~~~~~~ 332 (467)
T KOG1221|consen 323 FIELALRYFE 332 (467)
T ss_pred HHHHHHHhcc
Confidence 9999998875
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=156.39 Aligned_cols=215 Identities=18% Similarity=0.144 Sum_probs=150.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++|+|+||||+|+||.+++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. +
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4557899999999999999999999999999999886433222222111 1235678888886641 2
Q ss_pred CCCCEEEEecccCCCCc-c----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~-~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|+|||+||...... . .+.+...+++|+.++.++++++... +.+||++||...|...
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~------------- 189 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN------------- 189 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC-------------
Confidence 35899999998643211 1 1235678999999999999988653 2489999998876321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.....|+.+|.+.+.+++.++.+. |+++.+|+||.++.+..... .....+..... ......+
T Consensus 190 ---~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~---~~~~~~~~~~~---------~~~~~~~ 254 (290)
T PRK06701 190 ---ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD---FDEEKVSQFGS---------NTPMQRP 254 (290)
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc---cCHHHHHHHHh---------cCCcCCC
Confidence 122569999999999999988764 89999999999988743111 11112222211 1123457
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+++|+|++++.++.... .| .+++.++.
T Consensus 255 ~~~~dva~~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 255 GQPEELAPAYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred cCHHHHHHHHHHHcCcccCCccCcEEEeCCCc
Confidence 889999999999998653 35 67776653
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=156.69 Aligned_cols=210 Identities=18% Similarity=0.168 Sum_probs=140.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++||||+|+||++++++|+++|+.|++.+++...........+ ....+.++.+|+.+.. +..+|
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 82 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRLD 82 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999998877654322222111111 1234667888887641 23589
Q ss_pred EEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHc------C--CeEEEeecCcc-ccCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV------G--ARFLLTSTSEV-YGDPLQHPQKETYWG 248 (442)
Q Consensus 183 ~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~------g--~r~i~iSS~~v-y~~~~~~~~~E~~~~ 248 (442)
+|||+||...... ..+++...+++|+.++.++++++... + .++|++||... ++.+
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------- 151 (248)
T PRK06123 83 ALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP----------- 151 (248)
T ss_pred EEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC-----------
Confidence 9999999754321 11235578999999999988877542 1 26999999754 3321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.....|+.+|...|.+++.++.+. |+++.+||||+++++..... ....++.......++.
T Consensus 152 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~---~~~~~~~~~~~~~p~~--------- 214 (248)
T PRK06123 152 -----GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASG---GEPGRVDRVKAGIPMG--------- 214 (248)
T ss_pred -----CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhcc---CCHHHHHHHHhcCCCC---------
Confidence 011359999999999999887764 89999999999999853211 1122222222222221
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+.+++|++++++.++.... .| .|++.++
T Consensus 215 ~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 215 RGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred CCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 23468999999999887642 34 7777654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=154.44 Aligned_cols=209 Identities=17% Similarity=0.134 Sum_probs=144.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---ccc--CCCceeEEeccccccc------------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
++|+|+||||+|+||++++++|+++|++|++++|......+... ..+ ...++.++.+|+.+..
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE 84 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999998875332222211 111 1236778888886652
Q ss_pred cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH-----HcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~-----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
..++|+|||+||....... .+++...+++|+.++.++++++. +.+. +||++||...+..
T Consensus 85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 153 (249)
T PRK12827 85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG----------- 153 (249)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC-----------
Confidence 1358999999997553222 22356678999999999999987 4454 8999999776521
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
......|+.+|.+.+.+++.++.+ .+++++++|||++.++... ..+.. .......+ .
T Consensus 154 -----~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~---~~~~~---~~~~~~~~---------~ 213 (249)
T PRK12827 154 -----NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMAD---NAAPT---EHLLNPVP---------V 213 (249)
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccc---ccchH---HHHHhhCC---------C
Confidence 122367999999999998888765 3899999999999987531 11111 11122111 1
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+.+.+|+++++..++.+.. .| .+++.++
T Consensus 214 ~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 214 QRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred cCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 124578999999999886542 24 6676654
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=154.36 Aligned_cols=214 Identities=15% Similarity=0.066 Sum_probs=143.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-eCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-DNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.+++|+||||+|+||++++++|+++|++|+++ .|.... .+.....+ ...++.++.+|+.++. +.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA-AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999998874 554221 11111111 1245778889987652 12
Q ss_pred CCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+|||+||........+ .....+++|+.++.++++++.. .+. +||++||...+.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 146 (250)
T PRK08063 82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR--------------- 146 (250)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------------
Confidence 5899999998644322222 2344678999999999887754 344 899999976541
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|++.|.+++.++.+ .|+++++|+||++..+........ ..+........ ....+
T Consensus 147 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~~~~~~~~---------~~~~~ 214 (250)
T PRK08063 147 -YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR--EELLEDARAKT---------PAGRM 214 (250)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc--hHHHHHHhcCC---------CCCCC
Confidence 2223467999999999999988765 489999999999987642110000 11111111111 11246
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
++.+|+|++++.++.++. .| .+++.++..
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 215 VEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred cCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 889999999999997653 34 677766543
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=159.43 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=147.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---cccCCCceeEEeccccccc------------cCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+++|+||||+|+||++++++|+++|++|++++|+......... ......++.++.+|+.+.. +.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4589999999999999999999999999999986432221111 1111235788888887641 236
Q ss_pred CCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHH----cC-C-eEEEeecCc-cccCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-A-RFLLTSTSE-VYGDPLQHPQKETYWGN 249 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~----~g-~-r~i~iSS~~-vy~~~~~~~~~E~~~~~ 249 (442)
+|+|||+||........+ .+...+++|+.++.++++++.. .+ . ++|++||.. .++.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------- 148 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------- 148 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC-------------
Confidence 899999998755432222 3556789999998877776643 45 3 899999864 3321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHH--cCCCcEEecCCcee
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL--RKEPLTVYGDGKQT 324 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 324 (442)
.....|+.+|++.+.+++.++. ..|+++.++|||.++++... ...+..+..... .+.....+.++...
T Consensus 149 ----~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (259)
T PRK12384 149 ----KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMF---QSLLPQYAKKLGIKPDEVEQYYIDKVPL 221 (259)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhh---hhhhHHHHHhcCCChHHHHHHHHHhCcc
Confidence 1225799999999999888875 35999999999998876431 122222211100 00000011223345
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
..+++.+|++.+++.++.+.. .| .|++.+++.
T Consensus 222 ~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 222 KRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred cCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 678999999999999887553 35 788887653
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=157.85 Aligned_cols=220 Identities=20% Similarity=0.158 Sum_probs=145.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.++|+++||||+|+||++++++|+++|++|++++|...... .....+ ...++.++.+|+.+.. +.+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ-NVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 45679999999999999999999999999999988533211 111111 1235778888887641 135
Q ss_pred CCEEEEecccCCCC--c----ccCChhHHHHHhHHHHHHHHHHHHH----cC-CeEEEeecCcc-ccCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV--H----YKFNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEV-YGDPLQHPQKETYWG 248 (442)
Q Consensus 181 ~d~Vih~A~~~~~~--~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g-~r~i~iSS~~v-y~~~~~~~~~E~~~~ 248 (442)
+|+||||||..... . ..++++..+++|+.++.++++++.. .+ .++|++||... ++.
T Consensus 95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------ 162 (280)
T PLN02253 95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG------------ 162 (280)
T ss_pred CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC------------
Confidence 89999999975321 1 1134677899999999999887753 23 37888888653 321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC--CCchHHHHHHH---HHcCCCcEEecC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID--DGRVVSNFVAQ---ALRKEPLTVYGD 320 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~ 320 (442)
.....|+.+|.+.|.+++.++.+. |+++.+++||.+..+..... ........+.. ..... ..
T Consensus 163 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 232 (280)
T PLN02253 163 -----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKN-AN---- 232 (280)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcC-CC----
Confidence 112469999999999999987764 89999999999987632100 00000111111 11110 00
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
.....++++|+++++++++..+. .| .+++.+|...+
T Consensus 233 --l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~ 272 (280)
T PLN02253 233 --LKGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFTCT 272 (280)
T ss_pred --CcCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchhhc
Confidence 01234679999999999987643 34 67777664433
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=155.03 Aligned_cols=215 Identities=14% Similarity=0.068 Sum_probs=145.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.+|+++||||+|+||++++++|+++|++|+++++......+.....+ ....+.++.+|+.+.. +.+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP 87 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46799999999999999999999999999988764332222221111 1245778888887641 235
Q ss_pred CCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc----C-CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~----g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||...... ..+.++..+++|+.++.++++++... + .++|++||...+.
T Consensus 88 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~---------------- 151 (258)
T PRK09134 88 ITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN---------------- 151 (258)
T ss_pred CCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC----------------
Confidence 899999998654321 12245678999999999999887643 2 2788888765432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
+......|+.+|.+.|.+++.++++. ++++.+++||.+..... . ....+. ......+. ....+
T Consensus 152 ~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~----~-~~~~~~-~~~~~~~~---------~~~~~ 216 (258)
T PRK09134 152 LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGR----Q-SPEDFA-RQHAATPL---------GRGST 216 (258)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcc----c-ChHHHH-HHHhcCCC---------CCCcC
Confidence 11112579999999999999987754 48999999998876431 0 112222 22222111 12467
Q ss_pred HHHHHHHHHHHHcCCC-Cc-cEEecCCCccCHH
Q 013467 330 VSDLVEGLMRLMEGEH-VG-PFNLGNPGEFTML 360 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s~~ 360 (442)
++|+|++++.+++.+. .| .|++.++..++|.
T Consensus 217 ~~d~a~~~~~~~~~~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 217 PEEIAAAVRYLLDAPSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred HHHHHHHHHHHhcCCCcCCCEEEECCCeecccc
Confidence 9999999999998764 35 7777776655543
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-17 Score=153.51 Aligned_cols=216 Identities=14% Similarity=0.086 Sum_probs=144.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.... ....+.++.+|+.+.. +.+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------LPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------cCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 34567999999999999999999999999999999864321 1235677888887642 236
Q ss_pred CCEEEEecccCCCC------cccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV------HYKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 181 ~d~Vih~A~~~~~~------~~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+|+|||+||..... ...+++...+++|+.++.++++++ ++.+. ++|++||...+..
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------------- 144 (260)
T PRK06523 78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP------------- 144 (260)
T ss_pred CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC-------------
Confidence 89999999854211 112346778899999988776654 44554 8999999765421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC-------chHHHHHHHHHcC-CCcEEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG-------RVVSNFVAQALRK-EPLTVY 318 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~ 318 (442)
.......|+.+|...+.+++.++.+. |+++.+|+||.+.++....... .........+... ...
T Consensus 145 --~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (260)
T PRK06523 145 --LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGI--- 219 (260)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccC---
Confidence 01123679999999999999887653 8999999999998875210000 0000111111100 001
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
....+...+|+++++.+++.... .| .+.+.+|...+
T Consensus 220 ----p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 220 ----PLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred ----ccCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 11235578999999999997542 24 67777765543
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=154.19 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=138.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d 182 (442)
++++|+||||+|+||++++++|+++|++|++++|+.+... ...... ..++.++.+|+.+. ...++|
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE-AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999999988532111 111111 23566777887653 123689
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH---cCCeEEEeecCc-cccCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR---VGARFLLTSTSE-VYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~---~g~r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+|||+||....... .+.+...+++|+.++.++++++.. .+.++|++||.. .|+. .
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~-----------------~ 145 (249)
T PRK06500 83 AVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM-----------------P 145 (249)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-----------------C
Confidence 99999986543221 134667899999999999999974 234777777744 4432 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
....|+.+|.+.|.+++.++.+. |+++.++|||.++++.... ........+...+....++. .+..
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 216 (249)
T PRK06500 146 NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG---------RFGT 216 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC---------CCcC
Confidence 23679999999999998887654 8999999999999874210 01111222333333322221 2457
Q ss_pred HHHHHHHHHHHHcCCC
Q 013467 330 VSDLVEGLMRLMEGEH 345 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~ 345 (442)
.+|+++++.+++..+.
T Consensus 217 ~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 217 PEEIAKAVLYLASDES 232 (249)
T ss_pred HHHHHHHHHHHcCccc
Confidence 8999999999887543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=154.63 Aligned_cols=204 Identities=17% Similarity=0.119 Sum_probs=143.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+.. ..+....+.++.+|+.+. .+.++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL-PGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH-HHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 34579999999999999999999999999999998643322211 112223566777887653 12368
Q ss_pred CEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+++...... ..+.+.+.++.|+.++.++++++. +.+. +||++||...++.
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 147 (239)
T PRK12828 84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA---------------- 147 (239)
T ss_pred CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC----------------
Confidence 99999998643221 112345668899999999988774 3455 8999999887632
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...+.+++.+++. .++++.++|||+++++.... .++ ......|++
T Consensus 148 ~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~-----------------~~~----~~~~~~~~~ 206 (239)
T PRK12828 148 GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRA-----------------DMP----DADFSRWVT 206 (239)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhh-----------------cCC----chhhhcCCC
Confidence 122367999999999988877654 48999999999999873200 000 011234789
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
++|+++++..++.++. .| .+++.++.
T Consensus 207 ~~dva~~~~~~l~~~~~~~~g~~~~~~g~~ 236 (239)
T PRK12828 207 PEQIAAVIAFLLSDEAQAITGASIPVDGGV 236 (239)
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCE
Confidence 9999999999998653 25 66666654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=153.62 Aligned_cols=212 Identities=17% Similarity=0.118 Sum_probs=144.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+ ..... ...+.++.+|+.+.. +.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK-VAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHH-HHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3456799999999999999999999999999999875332111 11111 235678888887641 124
Q ss_pred CCEEEEecccCCCCc------ccCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH------YKFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~------~~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+|||+||...... ..+++...+++|+.++.++++++.. .+.++|++||...+..
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~-------------- 150 (255)
T PRK05717 85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS-------------- 150 (255)
T ss_pred CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC--------------
Confidence 899999999754321 1123567899999999999999853 2348999998765421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++++. ++++.+++||++.++..... . ...+. ...... . ....+.
T Consensus 151 --~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~--~-~~~~~-~~~~~~-~-------~~~~~~ 216 (255)
T PRK05717 151 --EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQR--R-AEPLS-EADHAQ-H-------PAGRVG 216 (255)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccc--c-chHHH-HHHhhc-C-------CCCCCc
Confidence 1123579999999999999988775 58999999999998753111 0 01111 111110 0 112467
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+.+|++.++..++.... .| .+.+.++
T Consensus 217 ~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 246 (255)
T PRK05717 217 TVEDVAAMVAWLLSRQAGFVTGQEFVVDGG 246 (255)
T ss_pred CHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 88999999999886542 24 5655544
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=144.59 Aligned_cols=295 Identities=20% Similarity=0.241 Sum_probs=208.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CC-eEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c--CCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L--LEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~--~~~d~Vih 186 (442)
..+|||||+-|.+|..+++-|..+ |. .|+.-+...+. ..+. ...-++-.|+.|.. . ..+|.+||
T Consensus 44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp--~~V~-----~~GPyIy~DILD~K~L~eIVVn~RIdWL~H 116 (366)
T KOG2774|consen 44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP--ANVT-----DVGPYIYLDILDQKSLEEIVVNKRIDWLVH 116 (366)
T ss_pred CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc--hhhc-----ccCCchhhhhhccccHHHhhcccccceeee
Confidence 348999999999999999988776 64 55554432111 1111 11234445555431 1 24899999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCC-CCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ-HPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~-~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
..+..+... +.+-.-...+|+.|..|+++.|++.+-++..-|+++.||.... +|-. +..-..|...||.||.-
T Consensus 117 fSALLSAvG-E~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTP-----dltIQRPRTIYGVSKVH 190 (366)
T KOG2774|consen 117 FSALLSAVG-ETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTP-----DLTIQRPRTIYGVSKVH 190 (366)
T ss_pred HHHHHHHhc-ccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCCC-----CeeeecCceeechhHHH
Confidence 987654322 3333445679999999999999999889999999999985432 2222 12455678999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
+|.+-+.+..++|+++.++|.+.+....... .....-...+..+++.+....+-.++....+.|..|+-++++.++..+
T Consensus 191 AEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~ 270 (366)
T KOG2774|consen 191 AELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAAD 270 (366)
T ss_pred HHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCC
Confidence 9999988888889999999988777542211 112222333444555555666667778889999999999999998876
Q ss_pred CC----ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC---CCCCccccChHHHHHhhCCCcccCHHHHHHHHHH
Q 013467 345 HV----GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE---DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417 (442)
Q Consensus 345 ~~----g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~ 417 (442)
.. .+||++ +-.+|..|+++.+.+++ +...+.+.+... .+.....+|.+.++.+..|+-++.+-..+.-++.
T Consensus 271 ~~~lkrr~ynvt-~~sftpee~~~~~~~~~-p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~ 348 (366)
T KOG2774|consen 271 SQSLKRRTYNVT-GFSFTPEEIADAIRRVM-PGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVA 348 (366)
T ss_pred HHHhhhheeeec-eeccCHHHHHHHHHhhC-CCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHH
Confidence 43 399988 57899999999999998 455565544321 2344578899999999888888778777777777
Q ss_pred HHHHHhhc
Q 013467 418 DFRQRIFG 425 (442)
Q Consensus 418 ~~~~~~~~ 425 (442)
.-+.++..
T Consensus 349 ~~~~n~~~ 356 (366)
T KOG2774|consen 349 VHKSNLKL 356 (366)
T ss_pred HHHhhhhh
Confidence 77766543
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=156.12 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=140.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
+++|+||||+|+||++++++|+++|++|++++|+..... ...++.++.+|+.+.. +..+|+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~ 76 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIARAGRIDV 76 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence 458999999999999999999999999999998643221 1235678888887641 235899
Q ss_pred EEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
||||||........ +.....+++|+.++.++++++ ++.+. +||++||...+. +..
T Consensus 77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 140 (270)
T PRK06179 77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL----------------PAP 140 (270)
T ss_pred EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC----------------CCC
Confidence 99999975432222 235778999999998888874 55665 999999976542 111
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC--CchHHHHH---HHHHcCCCcEEecCCceeEe
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD--GRVVSNFV---AQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 326 (442)
....|+.+|...+.+++.++.+ .|+++++++||++.++...... ...+..+- ...... +. .....
T Consensus 141 ~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~ 213 (270)
T PRK06179 141 YMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKA--VA-----KAVKK 213 (270)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHH--HH-----hcccc
Confidence 2367999999999998887654 5999999999999876432110 00011000 000000 00 01123
Q ss_pred ccCHHHHHHHHHHHHcCCCCc-cEE
Q 013467 327 FQFVSDLVEGLMRLMEGEHVG-PFN 350 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~g-~~~ 350 (442)
....+|+|+.++.++..+..+ .|.
T Consensus 214 ~~~~~~va~~~~~~~~~~~~~~~~~ 238 (270)
T PRK06179 214 ADAPEVVADTVVKAALGPWPKMRYT 238 (270)
T ss_pred CCCHHHHHHHHHHHHcCCCCCeeEe
Confidence 456799999999999887655 443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-18 Score=161.34 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=138.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++|+||||+|+||++++++|+++|++|++++|+.....+ . ...++.++.+|+.+.. ..++|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~-~----~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED-L----ASLGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-H----HhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 35689999999999999999999999999999986432111 1 1134778888887642 13689
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHH----HHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTL----NMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~----~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|||+||....... .++++..+++|+.++. .++..+++.+. ++|++||...+. +.
T Consensus 77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~~ 140 (273)
T PRK06182 77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------------YT 140 (273)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC----------------CC
Confidence 99999997543221 2246678899998854 44556666665 999999975321 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCC--------CchHHHHHHHHHcCCCcEEecCCc
Q 013467 254 GVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDD--------GRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
.....|+.+|.+.+.+++.++. ..|+++++++||++.++...... ............. .+....
T Consensus 141 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 215 (273)
T PRK06182 141 PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAA-----SMRSTY 215 (273)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHH-----HHHHhh
Confidence 1225699999999998877654 35899999999999886421000 0000000000000 000111
Q ss_pred eeEeccCHHHHHHHHHHHHcCCCCc-cEEec
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEHVG-PFNLG 352 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~~g-~~~i~ 352 (442)
....+.+.+|+|++++.++.....+ .|++.
T Consensus 216 ~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g 246 (273)
T PRK06182 216 GSGRLSDPSVIADAISKAVTARRPKTRYAVG 246 (273)
T ss_pred ccccCCCHHHHHHHHHHHHhCCCCCceeecC
Confidence 1235678999999999999876543 56554
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=153.93 Aligned_cols=208 Identities=16% Similarity=0.103 Sum_probs=143.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
..+++++||||+|+||+.++++|+++|++|++++|.. .. .....+.++.+|+.+.. +..+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~------~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF------LT--QEDYPFATFVLDVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch------hh--hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3457899999999999999999999999999999864 00 11235677888876541 2348
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||++|....... .+++...+++|+.++.++++++. +.+. +||++||.... .+
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~----------------~~ 141 (252)
T PRK08220 78 DVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH----------------VP 141 (252)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc----------------cC
Confidence 999999997543221 23466789999999999998874 3343 89999997543 12
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC--C----CchHHHHHHHHHcCCCcEEecCCce
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID--D----GRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
......|+.+|...+.+++.++.+ .|+++.+++||.++++....- . ...+......... ...
T Consensus 142 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 212 (252)
T PRK08220 142 RIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKL---------GIP 212 (252)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhh---------cCC
Confidence 233478999999999999988776 589999999999998753100 0 0000000111111 112
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+++++|+|++++.++.... .| ++.+.+|
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 213 LGKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247 (252)
T ss_pred CcccCCHHHHHHHHHHHhcchhcCccCcEEEECCC
Confidence 3467899999999999987543 24 4555554
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-17 Score=153.11 Aligned_cols=214 Identities=18% Similarity=0.145 Sum_probs=144.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++++||||+|+||++++++|+++|++|++++|+.....+ +...+ ...++.++.+|+.+.. +.+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEK-VAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 35689999999999999999999999999999886432211 11111 1245778888886541 235
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||++|........ ..++..+++|+.++.++++++. +.+. ++|++||...+...
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~-------------- 146 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS-------------- 146 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC--------------
Confidence 89999999864322211 2245678999999999888764 4554 89999998776321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.....|+.+|++.+.+++.++++. ++++++++||.++++...... ......+...+....+. ..
T Consensus 147 --~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 215 (250)
T TIGR03206 147 --SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL---------GR 215 (250)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc---------cC
Confidence 123579999999999999887764 899999999999987421100 00001122222222111 12
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+|+++..++..+. .| .+++.++
T Consensus 216 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 216 LGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred CcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 4567999999999887653 34 7877765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=154.59 Aligned_cols=214 Identities=16% Similarity=0.111 Sum_probs=145.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||.+++++|+++|++|++++|+....+ .....+ ...++.++.+|+.+.. ..+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE-EAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999999999998643211 111111 1235678889987641 135
Q ss_pred CCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc-----CC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV-----GA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~-----g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+|||+||...... ..+.+...+++|+.++.++++++... +. +||++||...+.....
T Consensus 90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~----------- 158 (259)
T PRK08213 90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP----------- 158 (259)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-----------
Confidence 899999998643221 12235667889999999999987654 44 8999999765432111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
...+...|+.+|+..|.+++.++++. |+++.+++|+.+-.+.. ...+..+......+.+.. .+
T Consensus 159 -~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~----~~~~~~~~~~~~~~~~~~---------~~ 224 (259)
T PRK08213 159 -EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMT----RGTLERLGEDLLAHTPLG---------RL 224 (259)
T ss_pred -cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcch----hhhhHHHHHHHHhcCCCC---------CC
Confidence 01123679999999999999987753 79999999998876532 223344444433333322 23
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|++.++..++.... .| .+++.++
T Consensus 225 ~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 225 GDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred cCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 357999999988886543 35 5555544
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-17 Score=155.81 Aligned_cols=214 Identities=16% Similarity=0.103 Sum_probs=146.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC-cccccccc--CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR-KENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++++||||+|+||.+++++|+++|++|++.+|..... .+.+.... ...++.++.+|+.+.. +
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999999999887643221 11121111 1235677888887641 2
Q ss_pred CCCCEEEEecccCCCC-----cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|++||+||..... ...+++...+++|+.++.++++++... +.+||++||...+..
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~-------------- 192 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP-------------- 192 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC--------------
Confidence 3589999999864211 112346778999999999999988642 348999999877632
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|++.+.+++.++.+ .|+++.+|+||+++++....... .......+....+ ...+
T Consensus 193 --~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~r~ 259 (294)
T PRK07985 193 --SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--TQDKIPQFGQQTP---------MKRA 259 (294)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC--CHHHHHHHhccCC---------CCCC
Confidence 112357999999999999998776 48999999999999985311100 0111222221111 1235
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+|.++++++..+. .| .+.+.+|
T Consensus 260 ~~pedva~~~~fL~s~~~~~itG~~i~vdgG 290 (294)
T PRK07985 260 GQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_pred CCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence 668999999999987653 24 5666655
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=151.71 Aligned_cols=201 Identities=13% Similarity=0.081 Sum_probs=137.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc---CCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL---LEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~---~~~d~Vih~ 187 (442)
+|+|+||||+|+||++++++|+++ ++|++++|+.... +..... ...++++.+|+.+. .+ .++|+|||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 78 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL-DELAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN 78 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH-HHHHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 568999999999999999999999 9999999864321 111111 13577888998764 22 259999999
Q ss_pred cccCCCCccc----CChhHHHHHhHHH----HHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 188 ACPASPVHYK----FNPVKTIKTNVVG----TLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 188 A~~~~~~~~~----~~~~~~~~~nv~g----t~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+|........ +.+...++.|+.+ +.++++.+++.+.++|++||...++. ......|
T Consensus 79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------------~~~~~~y 142 (227)
T PRK08219 79 AGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRA----------------NPGWGSY 142 (227)
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCc----------------CCCCchH
Confidence 9875432211 1245567888888 45555555666669999999876532 1123679
Q ss_pred HHHHHHHHHHHHHHHhhc-C-CcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGA-G-VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~-g-~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
+.+|...+.+++.++.+. + +++.+++||.+.++.. ..+... .+. . .....+++++|+++++
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~--------~~~~~~--~~~--~-----~~~~~~~~~~dva~~~ 205 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQ--------RGLVAQ--EGG--E-----YDPERYLRPETVAKAV 205 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHh--------hhhhhh--hcc--c-----cCCCCCCCHHHHHHHH
Confidence 999999999888876542 4 8999999987665421 111110 011 0 1124689999999999
Q ss_pred HHHHcCCCCc-cEEecC
Q 013467 338 MRLMEGEHVG-PFNLGN 353 (442)
Q Consensus 338 ~~~l~~~~~g-~~~i~~ 353 (442)
+++++.+..+ ++++.-
T Consensus 206 ~~~l~~~~~~~~~~~~~ 222 (227)
T PRK08219 206 RFAVDAPPDAHITEVVV 222 (227)
T ss_pred HHHHcCCCCCccceEEE
Confidence 9999987665 777654
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=144.38 Aligned_cols=202 Identities=15% Similarity=0.099 Sum_probs=143.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++|.++||||+++||..+++.|.+.|++|+...|+.+ +-+.+...+....+.....|++|.. +.++|
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~d-rL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREE-RLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHH-HHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence 4468999999999999999999999999999998533 2333333333345778888887762 23599
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
++|||||....... .++|++++++|+.|..++.++. .+.+. .+|.+||+..- .+.
T Consensus 84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~----------------~~y 147 (246)
T COG4221 84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR----------------YPY 147 (246)
T ss_pred EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc----------------ccC
Confidence 99999998655322 2358899999999988877764 45554 99999997632 233
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
...+.|+.+|+....+...+.++. +++++.|-||.+-...... ..... ........ ....++.
T Consensus 148 ~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~-~~~~~~~y------------~~~~~l~ 214 (246)
T COG4221 148 PGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGD-DERADKVY------------KGGTALT 214 (246)
T ss_pred CCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCch-hhhHHHHh------------ccCCCCC
Confidence 444789999999999988876654 8999999999885432110 00000 01111111 1225677
Q ss_pred HHHHHHHHHHHHcCCCC
Q 013467 330 VSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~~ 346 (442)
.+|+|+++.++++.|..
T Consensus 215 p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 215 PEDIAEAVLFAATQPQH 231 (246)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 89999999999998864
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=154.28 Aligned_cols=201 Identities=14% Similarity=0.113 Sum_probs=139.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+||||+|+||.++++.|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLAS-LAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3589999999999999999999999999999986432211 11111 1235777888887642 2368
Q ss_pred CEEEEecccCCCCcccC-----ChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYKF-----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~-----~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+||........+ .+...+++|+.++.++++.+.. .+.++|++||...+. +
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 143 (263)
T PRK06181 80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT----------------G 143 (263)
T ss_pred CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC----------------C
Confidence 99999998754432222 2456789999999999998743 234899999987653 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...|.+++.+..+ .++++.+++||.+..+... .... ..+.+.. ..+.....+++
T Consensus 144 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~--------~~~~--~~~~~~~--~~~~~~~~~~~ 211 (263)
T PRK06181 144 VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRK--------RALD--GDGKPLG--KSPMQESKIMS 211 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcch--------hhcc--ccccccc--cccccccCCCC
Confidence 223367999999999998887543 4899999999998876321 0000 0011111 11122237899
Q ss_pred HHHHHHHHHHHHcCCC
Q 013467 330 VSDLVEGLMRLMEGEH 345 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~ 345 (442)
++|+|++++.+++...
T Consensus 212 ~~dva~~i~~~~~~~~ 227 (263)
T PRK06181 212 AEECAEAILPAIARRK 227 (263)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999998643
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=157.15 Aligned_cols=221 Identities=15% Similarity=0.136 Sum_probs=146.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
.+++++++||||+|+||++++++|+++|++|++++|+.... .....+ ...++.++.+|+.+.. +
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD--EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH--HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999999998865432 111111 1235788889987642 1
Q ss_pred CCCCEEEEecccCCCCccc---CChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~---~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
.++|+|||+||........ +++...+++|+.++.++++.+.. .+.+||++||...+.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------- 145 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT---------------- 145 (258)
T ss_pred CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc----------------
Confidence 3589999999964322222 34566889999999998887743 224899999976541
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCC--chHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|...|.+++.++.+ .++++..|+||.++++....... ............. ++ . ...
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~-~-----~~~ 217 (258)
T PRK08628 146 GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK--IP-L-----GHR 217 (258)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc--CC-c-----ccc
Confidence 1223367999999999999998764 48999999999999874210000 0000111111111 11 0 024
Q ss_pred ccCHHHHHHHHHHHHcCC---CCc-cEEecCCCccCHH
Q 013467 327 FQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGEFTML 360 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~s~~ 360 (442)
++..+|+|+++++++..+ ..| .+.+.++ ...++
T Consensus 218 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg-~~~~~ 254 (258)
T PRK08628 218 MTTAEEIADTAVFLLSERSSHTTGQWLFVDGG-YVHLD 254 (258)
T ss_pred CCCHHHHHHHHHHHhChhhccccCceEEecCC-ccccc
Confidence 678899999999999765 235 4555433 44443
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-17 Score=151.79 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=141.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c-------CC-C
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L-------LE-V 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~~-~ 181 (442)
++++++||||+|+||+++++.|++.|++|++.++......+.+..... .++.++.+|+.+.. + .. +
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i 82 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKPI 82 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 456899999999999999999999999998876543222222222222 35777888886531 1 23 8
Q ss_pred CEEEEecccCCC------C----cccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 182 DQIYHLACPASP------V----HYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 182 d~Vih~A~~~~~------~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
|+|||+||.... . ...+++.+.+++|+.++.++++++. +.+. ++|++||....
T Consensus 83 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~------------ 150 (253)
T PRK08642 83 TTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ------------ 150 (253)
T ss_pred eEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc------------
Confidence 999999985311 0 0112355679999999999999885 3444 89999986432
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.+..+...|+.+|.+.|.+++.++++ .|+++..|+||.+..+..... .............+
T Consensus 151 ----~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~---~~~~~~~~~~~~~~--------- 214 (253)
T PRK08642 151 ----NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAA---TPDEVFDLIAATTP--------- 214 (253)
T ss_pred ----CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhcc---CCHHHHHHHHhcCC---------
Confidence 12233467999999999999998876 379999999999876532110 11122222222111
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+.+.+|++++++.++..+. .| .+.+.++
T Consensus 215 ~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 215 LRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred cCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 1347889999999999997543 35 5666554
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=152.47 Aligned_cols=217 Identities=17% Similarity=0.180 Sum_probs=139.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---ccCCCceeEEeccccccc-----c-------C
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HFGNPNFELIRHDVVEPL-----L-------L 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~-----~-------~ 179 (442)
++|+|+||||+|+||++++++|+++|++|++++|..+...+.... ......+.++.+|+.+.. + .
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999999998864332211111 112234567788887641 1 2
Q ss_pred CCCEEEEecccCCCC---cc-c---CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV---HY-K---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~---~~-~---~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
++|+|||||+..... .+ . +.+...+++|+.++..+++++ ++.+. +||++||...+..+... ..++
T Consensus 83 ~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-~~~~-- 159 (256)
T PRK09186 83 KIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFE-IYEG-- 159 (256)
T ss_pred CccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccch-hccc--
Confidence 389999999743211 11 1 224567788988876665554 44555 99999997654322211 1122
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|...+.+++.++++ .++++++++||.++++.. ..+........ ..
T Consensus 160 ---~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~--------~~~~~~~~~~~---------~~ 219 (256)
T PRK09186 160 ---TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP--------EAFLNAYKKCC---------NG 219 (256)
T ss_pred ---cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC--------HHHHHHHHhcC---------Cc
Confidence 12222347999999999999877765 489999999998876431 12222221111 11
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+++++|+|++++.++.+.. .| .+.+.+|
T Consensus 220 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred cCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 257899999999999997653 35 4454444
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=155.46 Aligned_cols=218 Identities=20% Similarity=0.250 Sum_probs=147.5
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccCCC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPASP 193 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~~~ 193 (442)
|+|+||||.+|+.+++.|++.+++|+++.|+... .....+...+++++.+|..+. +++++|+||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~---~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS---DRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH---HHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch---hhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 7999999999999999999999999999996521 122222334667888887654 6789999998876432
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (442)
........+++++|+++|+ +||+.|-...+.. . ....+....-..|...|+.+
T Consensus 77 -----------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~--------~-----~~~~p~~~~~~~k~~ie~~l-- 130 (233)
T PF05368_consen 77 -----------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDE--------S-----SGSEPEIPHFDQKAEIEEYL-- 130 (233)
T ss_dssp -----------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTT--------T-----TTSTTHHHHHHHHHHHHHHH--
T ss_pred -----------hhhhhhhhhHHHhhhccccceEEEEEecccccc--------c-----ccccccchhhhhhhhhhhhh--
Confidence 1445667899999999998 7776444333310 0 01111123445677666666
Q ss_pred HHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHH-HHcCC--CcEEecCCceeEecc-CHHHHHHHHHHHHcCCCC--
Q 013467 273 YHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ-ALRKE--PLTVYGDGKQTRSFQ-FVSDLVEGLMRLMEGEHV-- 346 (442)
Q Consensus 273 ~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~v-~v~Dva~ai~~~l~~~~~-- 346 (442)
++.++++++||||..+... +..+... ..... .+.+.++++....++ ..+|++++++.++.++..
T Consensus 131 --~~~~i~~t~i~~g~f~e~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~ 200 (233)
T PF05368_consen 131 --RESGIPYTIIRPGFFMENL--------LPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHN 200 (233)
T ss_dssp --HHCTSEBEEEEE-EEHHHH--------HTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTT
T ss_pred --hhccccceeccccchhhhh--------hhhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHhc
Confidence 4458999999998765421 1111110 11221 356667777666675 999999999999988742
Q ss_pred -c-cEEecCCCccCHHHHHHHHHHHhCCCCceE
Q 013467 347 -G-PFNLGNPGEFTMLELAQVVQETIDPNAKIE 377 (442)
Q Consensus 347 -g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~ 377 (442)
+ .+.++ ++.+|+.|+++.+.+.+|+++++.
T Consensus 201 ~~~~~~~~-~~~~t~~eia~~~s~~~G~~v~y~ 232 (233)
T PF05368_consen 201 NGKTIFLA-GETLTYNEIAAILSKVLGKKVKYV 232 (233)
T ss_dssp EEEEEEEG-GGEEEHHHHHHHHHHHHTSEEEEE
T ss_pred CCEEEEeC-CCCCCHHHHHHHHHHHHCCccEEe
Confidence 3 56665 488999999999999999987664
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=150.20 Aligned_cols=203 Identities=12% Similarity=0.059 Sum_probs=140.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||++++++|+++|++|++++|+........... ....+.++.+|+.+.. ..++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEA-LGRRFLSLTADLSDIEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 35679999999999999999999999999999998532111111111 1235778888886641 2359
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC-C-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+|||+||........ ..+++.+++|+.++.++++++. +.+ . ++|++||...+...
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------------- 147 (248)
T TIGR01832 82 DILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG-------------- 147 (248)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC--------------
Confidence 9999999975432221 2356778999999999988774 333 3 89999998766321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
.....|+.+|++.+.+++.++++. |+++.+++||.+..+........ .......... . ....|+
T Consensus 148 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~--~-------~~~~~~ 214 (248)
T TIGR01832 148 --IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD--EDRNAAILER--I-------PAGRWG 214 (248)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC--hHHHHHHHhc--C-------CCCCCc
Confidence 122569999999999999998764 89999999999987642100000 0111111111 1 123688
Q ss_pred CHHHHHHHHHHHHcCC
Q 013467 329 FVSDLVEGLMRLMEGE 344 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~ 344 (442)
..+|+|++++.++...
T Consensus 215 ~~~dva~~~~~l~s~~ 230 (248)
T TIGR01832 215 TPDDIGGPAVFLASSA 230 (248)
T ss_pred CHHHHHHHHHHHcCcc
Confidence 8999999999999754
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=149.41 Aligned_cols=212 Identities=17% Similarity=0.118 Sum_probs=144.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+... ...........+.++.+|+.+.. +.++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 90 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV--AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRI 90 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 456799999999999999999999999999999986431 11111222345567888876541 2368
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+||....... .+++...+++|+.++.++++++.. .+. +||++||..... +
T Consensus 91 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 154 (255)
T PRK06841 91 DILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV----------------A 154 (255)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc----------------C
Confidence 999999997543221 123556889999999999988754 344 899999976431 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+..... +............ ....+.+
T Consensus 155 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~~~---------~~~~~~~ 222 (255)
T PRK06841 155 LERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKA---WAGEKGERAKKLI---------PAGRFAY 222 (255)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccc---cchhHHHHHHhcC---------CCCCCcC
Confidence 112357999999999999888776 489999999999887642100 0001111111111 1235778
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+|++++++.++..+. .| .+.+.++.
T Consensus 223 ~~~va~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 223 PEEIAAAALFLASDAAAMITGENLVIDGGY 252 (255)
T ss_pred HHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 9999999999997653 35 56665553
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=153.21 Aligned_cols=190 Identities=13% Similarity=0.051 Sum_probs=133.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccc------------cCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~~~~d 182 (442)
+|+|+||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.+.. ...+|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQ-AFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999999999998643211 1111111 116788899987642 12489
Q ss_pred EEEEecccCCCCcc-----cCChhHHHHHhHHHHHHHHH----HHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY-----KFNPVKTIKTNVVGTLNMLG----LAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 183 ~Vih~A~~~~~~~~-----~~~~~~~~~~nv~gt~~ll~----~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|||+||....... .+.+...+++|+.++.++++ .+++.+. +||++||...+. +
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~----------------~ 144 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR----------------G 144 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------------C
Confidence 99999996532211 12366789999999988776 4455554 899999976431 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|++.+.+++.+.. ..|+++++++||.+.++.... ... .. ..++.
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------------~~~---~~----~~~~~ 201 (257)
T PRK07024 145 LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------------NPY---PM----PFLMD 201 (257)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------------CCC---CC----CCccC
Confidence 11235799999999999988764 458999999999998763210 000 00 01357
Q ss_pred HHHHHHHHHHHHcCCC
Q 013467 330 VSDLVEGLMRLMEGEH 345 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~ 345 (442)
.+|+++.++.++.+..
T Consensus 202 ~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 202 ADRFAARAARAIARGR 217 (257)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8999999999997643
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=147.29 Aligned_cols=211 Identities=17% Similarity=0.169 Sum_probs=142.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++|+||||+|+||++++++|+++|++|+++.|+...........+ ...++.++.+|+.+.. +.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 345799999999999999999999999999888876443222221111 1245777888886642 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCc-cccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSE-VYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~ 249 (442)
++|+|||+||........ +.+...+.+|+.++.++++++.. .+. +||++||.. +++.
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------------- 149 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------------- 149 (248)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC-------------
Confidence 689999999865432211 23556788999999999888764 343 799999964 3332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.....|+.+|.+.+.+++.++++ .++++++++||.+.++.. ......+........+ ...
T Consensus 150 ----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~----~~~~~~~~~~~~~~~~---------~~~ 212 (248)
T PRK05557 150 ----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMT----DALPEDVKEAILAQIP---------LGR 212 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccc----cccChHHHHHHHhcCC---------CCC
Confidence 12367999999999888877653 489999999998865432 1111222222222211 123
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+.+++|+++++..++.... .| .|++.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred CcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 6688999999998886532 34 7888765
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=175.06 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=151.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~~~ 180 (442)
..+++|+||||+|+||++++++|+++|++|++++|+...... ....+. ...+.++.+|+.+.. ..+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~-~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEA-AAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHH-HHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999999999999999986432211 111111 136778888886642 236
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+||||||........ ..+...+++|+.++.++++++. +.+ .+||++||...+.
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~--------------- 563 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN--------------- 563 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC---------------
Confidence 89999999965433221 2356788999999999977664 333 4899999976542
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCcee-CCCCccCCCchHHHHHHHHHcCCCcE----EecCCc
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTY-GPRMCIDDGRVVSNFVAQALRKEPLT----VYGDGK 322 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 322 (442)
+......|+.+|...+.+++.++.+. |+++.+++|+.+| +.+.... .+... .....+.... .+..+.
T Consensus 564 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~--~~~~~--~~~~~g~~~~~~~~~~~~~~ 638 (681)
T PRK08324 564 -PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTG--EWIEA--RAAAYGLSEEELEEFYRARN 638 (681)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccc--hhhhh--hhhhccCChHHHHHHHHhcC
Confidence 11223679999999999999987654 6999999999998 6543111 11000 0111111110 123444
Q ss_pred eeEeccCHHHHHHHHHHHHcC--C-CCc-cEEecCCCc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEG--E-HVG-PFNLGNPGE 356 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~--~-~~g-~~~i~~~~~ 356 (442)
....+++++|+|++++.++.. . ..| ++++.+|..
T Consensus 639 ~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 639 LLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNA 676 (681)
T ss_pred CcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCch
Confidence 567899999999999998842 2 235 888887754
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=148.52 Aligned_cols=216 Identities=14% Similarity=0.070 Sum_probs=143.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.++. +
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3556799999999999999999999999999999986432212221111 1235677888886641 2
Q ss_pred CCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
..+|+||||||...... ..++++..+++|+.++..+++++ ++.+. ++|++||...+...
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------ 152 (254)
T PRK06114 85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN------------ 152 (254)
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC------------
Confidence 35899999999754322 12346678899999998877665 34444 89999997643211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|++.+.+++.++.+ .|+++.+|+||.+.++.... ... ...........+ ...
T Consensus 153 --~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~--~~~-~~~~~~~~~~~p---------~~r 218 (254)
T PRK06114 153 --RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR--PEM-VHQTKLFEEQTP---------MQR 218 (254)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc--ccc-hHHHHHHHhcCC---------CCC
Confidence 1111357999999999999998764 48999999999998874311 111 111111221111 123
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|++.++++++.+.. .| ++.+.+|
T Consensus 219 ~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 219 MAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCceEEECcC
Confidence 5678999999999987543 35 5555544
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=148.94 Aligned_cols=211 Identities=17% Similarity=0.113 Sum_probs=136.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
|++|+||||+|+||++++++|+++|++|+++.+............+ ...++.++.+|+.+.. ..++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 4589999999999999999999999999876432222111111111 1235677888887642 2358
Q ss_pred CEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHc--------CCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 182 d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~--------g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
|+|||++|...... ..++....+++|+.++..+++++... +.+||++||...+...
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------- 149 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------- 149 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----------
Confidence 99999998643221 11234578899999998877765432 1369999997643211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+ .....|+.+|...+.+++.++.+ .|++++++|||.++++..... .. ...........++.
T Consensus 150 ---~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~--~~-~~~~~~~~~~~~~~--------- 213 (247)
T PRK09730 150 ---P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASG--GE-PGRVDRVKSNIPMQ--------- 213 (247)
T ss_pred ---C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccC--CC-HHHHHHHHhcCCCC---------
Confidence 1 11135999999999998887654 489999999999999854211 11 12222222222211
Q ss_pred eccCHHHHHHHHHHHHcCC---CCc-cEEecC
Q 013467 326 SFQFVSDLVEGLMRLMEGE---HVG-PFNLGN 353 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~ 353 (442)
...+.+|+++++++++.++ ..| .+++.+
T Consensus 214 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 245 (247)
T PRK09730 214 RGGQPEEVAQAIVWLLSDKASYVTGSFIDLAG 245 (247)
T ss_pred CCcCHHHHHHHHHhhcChhhcCccCcEEecCC
Confidence 1236899999999988765 234 555544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=151.67 Aligned_cols=156 Identities=18% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c--------CCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L--------LEVD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~--------~~~d 182 (442)
+++|+||||+|+||++++++|+++|++|++++|+..... .+ ...+++++.+|+.+.. + .++|
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~-~l----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id 78 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVA-AL----EAEGLEAFQLDYAEPESIAALVAQVLELSGGRLD 78 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HH----HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence 468999999999999999999999999999998643211 11 1235677888887641 1 2589
Q ss_pred EEEEecccCCCCcccC----ChhHHHHHhHHH----HHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKF----NPVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~----~~~~~~~~nv~g----t~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+||||||........+ .....+++|+.| +.++++.+++.+. +||++||...+. +.
T Consensus 79 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~~ 142 (277)
T PRK05993 79 ALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV----------------PM 142 (277)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------------CC
Confidence 9999998755433222 245688999999 5666777777775 999999975441 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCC
Q 013467 254 GVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGP 292 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~ 292 (442)
.....|+.+|++.|.+++.+.. ..|+++++|+||.+-.+
T Consensus 143 ~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 143 KYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 2346899999999999988764 35899999999988765
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=148.87 Aligned_cols=212 Identities=18% Similarity=0.136 Sum_probs=143.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||++++++|+++|++|+++.|+.....+.....+ ...++.++.+|+.+.. +.+
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR 83 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999999999888775432222221111 1246788888887641 236
Q ss_pred CCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc--C-CeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~--g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|+|||+||...... ..+.++..+++|+.++.++++++.+. . .++|++||...+. +.
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~ 147 (245)
T PRK12937 84 IDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL----------------PL 147 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------------CC
Confidence 899999999643221 12235667899999999999888653 2 3899999876431 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.....|+.+|...+.+++.++.+ .|+++++++||.+-.+..... ........+.+..++ ..+.++
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~ 215 (245)
T PRK12937 148 PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG---KSAEQIDQLAGLAPL---------ERLGTP 215 (245)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc---CCHHHHHHHHhcCCC---------CCCCCH
Confidence 23467999999999999888665 389999999998876532100 011222333322221 235578
Q ss_pred HHHHHHHHHHHcCCCC---c-cEEecCC
Q 013467 331 SDLVEGLMRLMEGEHV---G-PFNLGNP 354 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~~---g-~~~i~~~ 354 (442)
+|+++++..++..+.. | .+++.++
T Consensus 216 ~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 216 EEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHcCccccCccccEEEeCCC
Confidence 9999999999876532 4 6666543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=148.47 Aligned_cols=213 Identities=19% Similarity=0.145 Sum_probs=146.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++++|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. ..++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 35789999999999999999999999999999875432221111110 1236788888887642 1469
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||++|....... .+.+...++.|+.++.++++++.. .+. +||++||...+. +
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 149 (250)
T PRK12939 86 DGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW----------------G 149 (250)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc----------------C
Confidence 999999997543221 123556788999999999888753 233 899999976542 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...|.+++.++.+ .++++.+++||.+..+....... ..+....... .....+++
T Consensus 150 ~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~~---------~~~~~~~~ 217 (250)
T PRK12939 150 APKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA---DERHAYYLKG---------RALERLQV 217 (250)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC---hHHHHHHHhc---------CCCCCCCC
Confidence 222357999999999999987654 48999999999987765321111 0222222221 12345788
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
++|++++++.++..+. .| .+.+.++.
T Consensus 218 ~~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 218 PDDVAGAVLFLLSDAARFVTGQLLPVNGGF 247 (250)
T ss_pred HHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 9999999999997643 34 67776653
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=146.42 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQI 184 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~V 184 (442)
..+++|+||||+|+||++++++|+++|+ +|++++|+.....+ ...++.++.+|+.+. ....+|+|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 3456899999999999999999999998 99999986433221 224677888888764 12358999
Q ss_pred EEeccc-CCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACP-ASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~-~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
||++|. ..... ..+.+...+++|+.++.++++++. +.+. +||++||...+. +..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~----------------~~~ 141 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV----------------NFP 141 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc----------------CCC
Confidence 999997 22211 123356678899999999998864 3444 899999977652 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~ 292 (442)
....|+.+|...|.+++.++.+. |++++++||+.+.++
T Consensus 142 ~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~ 182 (238)
T PRK08264 142 NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD 182 (238)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence 34679999999999998887653 899999999988765
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-16 Score=145.51 Aligned_cols=210 Identities=17% Similarity=0.130 Sum_probs=144.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|+... ......+.++.+|+.+.. +.++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-------TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-------hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999999999986432 012245778888886641 1357
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----c-C-CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----V-G-ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~-g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||....... ...++..+++|+.++.++++++.. . + .+||++||...+.
T Consensus 77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------- 140 (252)
T PRK07856 77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR---------------- 140 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC----------------
Confidence 999999986433221 123567889999999999998753 2 3 3899999976542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
+......|+.+|...|.+++.++.+. .+++.+++||.+..+........ ...........+ ...+..
T Consensus 141 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~ 209 (252)
T PRK07856 141 PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGD--AEGIAAVAATVP---------LGRLAT 209 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccC--HHHHHHHhhcCC---------CCCCcC
Confidence 22233679999999999999988764 38899999999877642100000 011111111111 123567
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+|+++++++++..+. .| .+.+.+|...
T Consensus 210 p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~ 241 (252)
T PRK07856 210 PADIAWACLFLASDLASYVSGANLEVHGGGER 241 (252)
T ss_pred HHHHHHHHHHHcCcccCCccCCEEEECCCcch
Confidence 8999999999987543 35 6677665443
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-16 Score=146.05 Aligned_cols=206 Identities=16% Similarity=0.096 Sum_probs=140.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|..... .++.++.+|+.+.. +.++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~i 73 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGRI 73 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3467999999999999999999999999999998853221 25677888886641 2368
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||........ +++...+++|+.++..+++++. +.+. ++|++||...+. +
T Consensus 74 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 137 (258)
T PRK06398 74 DILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA----------------V 137 (258)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------------C
Confidence 9999999975432222 2356678999999998887764 3343 899999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccC-------CCchHHHHHHHHHcCCCcEEecCCce
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
......|+.+|.+.+.+++.++.+. ++++.+|+||.+-.+..... ...........+ .....
T Consensus 138 ~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 208 (258)
T PRK06398 138 TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREW---------GEMHP 208 (258)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhh---------hhcCC
Confidence 2234689999999999999987764 48999999998876531100 000000001111 11111
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|+|+++++++.... .| .+.+.+|
T Consensus 209 ~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg 243 (258)
T PRK06398 209 MKRVGKPEEVAYVVAFLASDLASFITGECVTVDGG 243 (258)
T ss_pred cCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCc
Confidence 2346678999999999887542 35 5555554
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=148.54 Aligned_cols=214 Identities=16% Similarity=0.170 Sum_probs=146.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++|+||||+|+||++++++|+++|++|++++|...... .....+ ...++.++.+|+.+.. +.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45679999999999999999999999999999988533211 111111 1235677788886542 23
Q ss_pred CCCEEEEecccCCCCccc---CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~---~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|+|||+||...+.... +.+...+++|+.++.++++++. +.+. ++|++||.... .
T Consensus 88 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~----------------~ 151 (255)
T PRK06113 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE----------------N 151 (255)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc----------------C
Confidence 589999999975433222 2355668999999999999885 3343 89999997643 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|++.+.+++.++.+ .|+++.++.||.+..+... ....+.+.....+..+ ...+.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~---~~~~~~~~~~~~~~~~---------~~~~~ 219 (255)
T PRK06113 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK---SVITPEIEQKMLQHTP---------IRRLG 219 (255)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccc---cccCHHHHHHHHhcCC---------CCCCc
Confidence 2223367999999999999998764 3899999999998766421 1111222222222211 12356
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
..+|+++++..++.... .| .+++.++..
T Consensus 220 ~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 220 QPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEECCCcc
Confidence 78999999999987543 35 777776643
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=153.91 Aligned_cols=216 Identities=13% Similarity=0.047 Sum_probs=138.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.....+ ....+ ..+.++.+|+.+.. ..++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~-~~~~l--~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVARE-ALAGI--DGVEVVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh--hhCeEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 456799999999999999999999999999999986432221 11111 23678888887642 2468
Q ss_pred CEEEEecccCCCCc--ccCChhHHHHHhHHHHHHHHH----HHHHcC-CeEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLG----LAKRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 182 d~Vih~A~~~~~~~--~~~~~~~~~~~nv~gt~~ll~----~a~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|+||||||...... ..+.++..+++|+.++..+++ .+++.+ .++|++||....... ..+++.....+..
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~----~~~~~~~~~~~~~ 176 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP----IRWDDPHFTRGYD 176 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC----CCccccCccCCCC
Confidence 99999999754321 223467788999999666555 445555 499999997543211 1111100012334
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
+...|+.+|.+.+.+++.++++ .|+++++++||++.++....... ..............+. . ..+...+
T Consensus 177 ~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~~~~~-~-----~~~~~~~ 248 (315)
T PRK06196 177 KWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPR--EEQVALGWVDEHGNPI-D-----PGFKTPA 248 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCCh--hhhhhhhhhhhhhhhh-h-----hhcCCHh
Confidence 4568999999999999888664 48999999999999875311100 0000000111000000 0 0245679
Q ss_pred HHHHHHHHHHcCC
Q 013467 332 DLVEGLMRLMEGE 344 (442)
Q Consensus 332 Dva~ai~~~l~~~ 344 (442)
|+|..++.++..+
T Consensus 249 ~~a~~~~~l~~~~ 261 (315)
T PRK06196 249 QGAATQVWAATSP 261 (315)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988754
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=155.46 Aligned_cols=178 Identities=15% Similarity=0.130 Sum_probs=122.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------LE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~~ 180 (442)
.+++|+||||+|+||.+++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. + .+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEA-AAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999999999999999986432211 11111 1235778888886642 1 24
Q ss_pred CCEEEEecccCCCC-----cccCChhHHHHHhHHHHHHHHHHHHH----cC---CeEEEeecCccccCCC--C--CCC--
Q 013467 181 VDQIYHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLAKR----VG---ARFLLTSTSEVYGDPL--Q--HPQ-- 242 (442)
Q Consensus 181 ~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~a~~----~g---~r~i~iSS~~vy~~~~--~--~~~-- 242 (442)
+|+||||||..... ...+.++..+++|+.|+.++++++.. .+ .|+|++||...+.... . .+.
T Consensus 84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~ 163 (322)
T PRK07453 84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPA 163 (322)
T ss_pred ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCcc
Confidence 89999999964321 11234677899999999998877653 32 3999999977543110 0 000
Q ss_pred CCCC-------------CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc----CCcEEEEeeCceeCCC
Q 013467 243 KETY-------------WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA----GVEVRIARIFNTYGPR 293 (442)
Q Consensus 243 ~E~~-------------~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~----g~~~~iiRp~~v~G~~ 293 (442)
+.++ +....+..+...|+.||++.+.+++.++++. |++++++|||+|++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 164 DLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred chhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 1000 0011234566889999999998888887754 7999999999998654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=149.75 Aligned_cols=215 Identities=16% Similarity=0.173 Sum_probs=143.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE-AVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45679999999999999999999999999999998643221 111111 1235677888886641 23
Q ss_pred CCCEEEEecccCCCCcc-------------------cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCcccc
Q 013467 180 EVDQIYHLACPASPVHY-------------------KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYG 235 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~-------------------~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~ 235 (442)
++|+|||+||...+... .+++...+++|+.++..+++.+ ++.+. +||++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 166 (278)
T PRK08277 87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT 166 (278)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence 68999999996433211 1235678899999988666544 44444 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc---CCCchHHHHHHHH
Q 013467 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI---DDGRVVSNFVAQA 309 (442)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~---~~~~~~~~~~~~~ 309 (442)
+......|+.+|++.+.+++.++.+. |+++.+|+||.+..+.... .............
T Consensus 167 ----------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 167 ----------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred ----------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 22234679999999999999987765 8999999999998874210 0000001111111
Q ss_pred HcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC-CC---Cc-cEEecCC
Q 013467 310 LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG-EH---VG-PFNLGNP 354 (442)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~-~~---~g-~~~i~~~ 354 (442)
.... ....+...+|+|+++++++.. .. .| .+.+.+|
T Consensus 231 ~~~~---------p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 231 LAHT---------PMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred hccC---------CccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 1111 123466789999999998876 33 35 5555444
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=147.82 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=133.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~V 184 (442)
|+|+||||+|+||.+++++|+++|++|++++|+..... .+.... ..++.++.+|+.+.. +.++|+|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQ-ELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 58999999999999999999999999999998643211 111111 235778888886641 2369999
Q ss_pred EEecccCCCC-----cccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
||+||..... ...+.+.+.+++|+.++..+++.+ ++.+. ++|++||...+ .+..
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~----------------~~~~ 142 (248)
T PRK10538 79 VNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS----------------WPYA 142 (248)
T ss_pred EECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC----------------CCCC
Confidence 9999864211 122345678899999966665554 45565 89999997643 1222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
....|+.+|...+.+++.++.+. ++++.+++||.+.|+...... ... ....... + . ...++..
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~-~~~~~~~--------~-~---~~~~~~~ 209 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKAEKT--------Y-Q---NTVALTP 209 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc-HHHHHhh--------c-c---ccCCCCH
Confidence 34679999999999998887653 799999999999876421000 000 0000000 0 0 1135688
Q ss_pred HHHHHHHHHHHcCCC
Q 013467 331 SDLVEGLMRLMEGEH 345 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~ 345 (442)
+|+|++++.++..+.
T Consensus 210 ~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 210 EDVSEAVWWVATLPA 224 (248)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=149.12 Aligned_cols=193 Identities=18% Similarity=0.081 Sum_probs=135.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||+.++++|+++|++|++.+|+.....+ ....+ ..+.++.+|+.+.. ..++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKE-TAAEL--GLVVGGPLDVTDPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh--ccceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 345799999999999999999999999999999885322211 11111 14677888887642 2368
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|++|||||........ +.....+++|+.++.++++.+ .+.+. +||++||...+. +
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 143 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI----------------P 143 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC----------------C
Confidence 9999999975432222 235668899999988877665 44565 899999976542 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...+.+++.+..+ .|+++++|+||.+-.+.. .+.. ......++.
T Consensus 144 ~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~----------------~~~~------~~~~~~~~~ 201 (273)
T PRK07825 144 VPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELI----------------AGTG------GAKGFKNVE 201 (273)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhh----------------cccc------cccCCCCCC
Confidence 223467999999988887776544 489999999998755321 0000 011224788
Q ss_pred HHHHHHHHHHHHcCCCCc
Q 013467 330 VSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~~g 347 (442)
.+|+|+.++.++.++...
T Consensus 202 ~~~va~~~~~~l~~~~~~ 219 (273)
T PRK07825 202 PEDVAAAIVGTVAKPRPE 219 (273)
T ss_pred HHHHHHHHHHHHhCCCCE
Confidence 999999999999876553
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-16 Score=145.57 Aligned_cols=213 Identities=16% Similarity=0.079 Sum_probs=140.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
..+|+++||||+|+||++++++|+++|++|+++++......+.+ ...++.++.+|+.+.. +.++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKEL----REKGVFTIKCDVGNRDQVKKSKEVVEKEFGRV 80 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH----HhCCCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34679999999999999999999999999998876433222222 1124677888887652 2368
Q ss_pred CEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHH----HHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNML----GLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll----~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||...... ..+.+...+++|+.++..+. +.+++.+. ++|++||...++. +
T Consensus 81 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---------------~ 145 (255)
T PRK06463 81 DVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT---------------A 145 (255)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC---------------C
Confidence 99999998743221 12236678899999965554 44444444 8999999876532 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++.+ .|+++.+++||++-.+..... .......+........ ....+.
T Consensus 146 ~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 216 (255)
T PRK06463 146 AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKT---------VLKTTG 216 (255)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCC---------CcCCCc
Confidence 112356999999999999998765 489999999998865432100 0000111111111111 122456
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|++++++.++..+. .| .+.+.+|
T Consensus 217 ~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 246 (255)
T PRK06463 217 KPEDIANIVLFLASDDARYITGQVIVADGG 246 (255)
T ss_pred CHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 78999999999987653 35 5666555
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-16 Score=145.56 Aligned_cols=211 Identities=18% Similarity=0.122 Sum_probs=138.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++++||||+|+||++++++|+++|++|++..+............+ ....+..+.+|+.+.. +.+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999886543222221111111 1234566778876541 236
Q ss_pred CCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||...... ..++++..+++|+.++..+++.+ ++.+. +||++||.....
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------- 145 (246)
T PRK12938 82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK---------------- 145 (246)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC----------------
Confidence 899999999754221 12346678899999977765544 45565 899999965321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++++ .|+++.+|+||++.++... ..............+ ...+.
T Consensus 146 ~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~----~~~~~~~~~~~~~~~---------~~~~~ 212 (246)
T PRK12938 146 GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK----AIRPDVLEKIVATIP---------VRRLG 212 (246)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhh----hcChHHHHHHHhcCC---------ccCCc
Confidence 1123367999999999988887654 4899999999999887431 111222222222211 12355
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|++.++.+++..+. .| .+.+.++
T Consensus 213 ~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 213 SPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred CHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 68999999999887643 24 5665544
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=146.96 Aligned_cols=210 Identities=15% Similarity=0.094 Sum_probs=142.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+||||+|+||.+++++|+++|++|+++++......+.....+ ...++.++.+|+.+.. +..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999988764332222221111 1246788889987642 2358
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+|||++|....... .+.+...+.+|+.++.++++++.. .+ .++|++||.... .
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~----------------~ 145 (256)
T PRK12743 82 DVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH----------------T 145 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc----------------C
Confidence 999999997543221 134667899999999999987753 22 389999996532 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+..+...|+.+|.+.+.+++.++.+ .|++++.|+||.+.++...... .........+.+ ...+.
T Consensus 146 ~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~----~~~~~~~~~~~~---------~~~~~ 212 (256)
T PRK12743 146 PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD----SDVKPDSRPGIP---------LGRPG 212 (256)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC----hHHHHHHHhcCC---------CCCCC
Confidence 3334468999999999999888764 3899999999999987532111 111111111111 11345
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+.+|+++++..++.... .| .+.+.++
T Consensus 213 ~~~dva~~~~~l~~~~~~~~~G~~~~~dgg 242 (256)
T PRK12743 213 DTHEIASLVAWLCSEGASYTTGQSLIVDGG 242 (256)
T ss_pred CHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 78999999999987543 35 5555544
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-16 Score=148.33 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=139.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---ccc--CCCceeEEecccccc------------c
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHF--GNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~D~~~~------------~ 177 (442)
++++++||||+|+||.+++++|+++|++|+++++......+... ..+ ...++.++.+|+.+. .
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999998887764332222111 111 123577888888654 1
Q ss_pred cCCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEee-cC-ccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTS-TS-EVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iS-S~-~vy~~~~~~~~~E~~~~ 248 (442)
+.++|+|||+||...... ..+.++..+++|+.++..+++++... +.++++++ |. ..+.
T Consensus 87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~------------- 153 (257)
T PRK12744 87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT------------- 153 (257)
T ss_pred hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC-------------
Confidence 236899999999643221 12246678899999999999988643 23566553 32 2221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.....|+.+|++.|.+++.++++. |+++++++||.+.++....... ..... ...... ........
T Consensus 154 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~---~~~~~~-~~~~~~~~ 221 (257)
T PRK12744 154 -----PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG---AEAVA---YHKTAA-ALSPFSKT 221 (257)
T ss_pred -----CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc---cchhh---cccccc-cccccccC
Confidence 112679999999999999998764 7999999999997763211000 00000 000000 00111122
Q ss_pred eccCHHHHHHHHHHHHcCCC--Cc-cEEecCCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH--VG-PFNLGNPG 355 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~~ 355 (442)
.+.+++|++.++..++.... .| ++++.++.
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg~ 254 (257)
T PRK12744 222 GLTDIEDIVPFIRFLVTDGWWITGQTILINGGY 254 (257)
T ss_pred CCCCHHHHHHHHHHhhcccceeecceEeecCCc
Confidence 57889999999999998532 24 77777653
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=145.48 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=143.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++|+||||+|+||++++++|+++|++|++++|+............ ...++.++.+|+.+.. +.++|
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id 82 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD 82 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999999999999986431111111111 1235788899987642 23589
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|||++|....... .+.++..+++|+.++.+++++ +++.+. +||++||...+.. .
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~----------------~ 146 (245)
T PRK12824 83 ILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG----------------Q 146 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC----------------C
Confidence 99999986533221 223566788999998888554 455554 9999999765521 1
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.....|+.+|.+.+.+++.++.+ .|+++.+++||++.++..... ............+ ...+...
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~----~~~~~~~~~~~~~---------~~~~~~~ 213 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM----GPEVLQSIVNQIP---------MKRLGTP 213 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc----CHHHHHHHHhcCC---------CCCCCCH
Confidence 12357999999999888887653 489999999999987643111 1122222222211 2235568
Q ss_pred HHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 331 SDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+|+++++..++..+. .| .+++.++..
T Consensus 214 ~~va~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 214 EEIAAAVAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 999999998886543 24 788887653
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-16 Score=143.05 Aligned_cols=206 Identities=15% Similarity=0.097 Sum_probs=141.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~ 187 (442)
.++++++||||+|+||++++++|+++|++|++++|..... ...++.++.+|+.+. .+.++|+|||+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--------LSGNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--------cCCcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 3457899999999999999999999999999998853221 123577888888664 23468999999
Q ss_pred cccCCC-----CcccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPASP-----VHYKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 188 A~~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
||.... ....+++...+++|+.++.++++++.. .+. +||++||...+.. .....
T Consensus 75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~~~~ 138 (235)
T PRK06550 75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVA----------------GGGGA 138 (235)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC----------------CCCCc
Confidence 985421 111224667899999999999887753 333 8999999765421 11235
Q ss_pred hhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHH
Q 013467 258 CYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 334 (442)
.|+.+|...+.+++.++.+. |+++++++||++.++....... -..+........ ....+...+|+|
T Consensus 139 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~a 207 (235)
T PRK06550 139 AYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE--PGGLADWVARET---------PIKRWAEPEEVA 207 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC--chHHHHHHhccC---------CcCCCCCHHHHH
Confidence 79999999999988877654 8999999999998875311100 011111122211 123467789999
Q ss_pred HHHHHHHcCCC---Cc-cEEecCC
Q 013467 335 EGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 335 ~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++++.++.+.. .| .+.+.+|
T Consensus 208 ~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 208 ELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHcChhhccCCCcEEEECCc
Confidence 99999986543 34 4555444
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=148.24 Aligned_cols=217 Identities=13% Similarity=0.026 Sum_probs=143.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~------------ 177 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.+...+ ....+ ...++.++.+|+.+..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAER-AAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999986432221 11111 1245778888987641
Q ss_pred cCCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|++|||||...... ..+++...+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 150 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK------------- 150 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc-------------
Confidence 236999999999643221 123466788999999988888764 3444 899999976542
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|++.+.+++.++.+. |+++.+|+||.+-.+.... .................+
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--------- 218 (260)
T PRK07063 151 ---IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQP--------- 218 (260)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCC---------
Confidence 11223579999999999999987654 8999999999987653210 000000001111111111
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
...+...+|+|.++++++.++. .| ...+.+|..
T Consensus 219 ~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~~ 255 (260)
T PRK07063 219 MKRIGRPEEVAMTAVFLASDEAPFINATCITIDGGRS 255 (260)
T ss_pred CCCCCCHHHHHHHHHHHcCccccccCCcEEEECCCee
Confidence 1235568999999999987653 35 555555533
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=142.65 Aligned_cols=202 Identities=18% Similarity=0.140 Sum_probs=137.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c------CCCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L------LEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~------~~~d~V 184 (442)
+++|+||||+|+||++++++|+++|++|++++|..... ...+++.+|+.+.. + .++|+|
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~v 72 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----------FPGELFACDLADIEQTAATLAQINEIHPVDAI 72 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc----------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEE
Confidence 46899999999999999999999999999999864331 01245667766541 1 158999
Q ss_pred EEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||++|......+. +++...+++|+.++.++.+++ ++.+. ++|++||...|+.+ .
T Consensus 73 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------------~ 135 (234)
T PRK07577 73 VNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL-----------------D 135 (234)
T ss_pred EECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-----------------C
Confidence 9999975543322 235567889999987776655 44555 89999998766421 1
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|...|.+++.++.+ .|+++++||||.+..+..... ...........+...+ ...+...+|
T Consensus 136 ~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~ 205 (234)
T PRK07577 136 RTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQT-RPVGSEEEKRVLASIP---------MRRLGTPEE 205 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccc-cccchhHHHHHhhcCC---------CCCCcCHHH
Confidence 267999999999999887654 489999999999887643110 0000111111222111 112446899
Q ss_pred HHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 333 LVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 333 va~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+|++++.++..+. .| .+.+.++
T Consensus 206 ~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (234)
T PRK07577 206 VAAAIAFLLSDDAGFITGQVLGVDGG 231 (234)
T ss_pred HHHHHHHHhCcccCCccceEEEecCC
Confidence 9999999997652 35 5666544
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=145.98 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=143.0
Q ss_pred EEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc--------cCCCCEEEEeccc
Q 013467 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL--------LLEVDQIYHLACP 190 (442)
Q Consensus 120 lVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~--------~~~~d~Vih~A~~ 190 (442)
+||||+|+||+.++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. ..++|++||++|.
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLA-AAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 59999999999999999999999999998632211 111111 1245778888887651 2358999999986
Q ss_pred CCCCcc----cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 191 ASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 191 ~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
...... .++....+++|+.++.+++++....+. ++|++||...+. +..+...|+.+|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~----------------~~~~~~~Y~~sK~a 143 (230)
T PRK07041 80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR----------------PSASGVLQGAINAA 143 (230)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC----------------CCCcchHHHHHHHH
Confidence 543221 234667889999999999996665554 899999987763 22234679999999
Q ss_pred HHHHHHHHHhhc-CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 266 AETLTMDYHRGA-GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 266 ~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
.+.+++.++.+. ++++.+++||.+-.+............++.......+. ..+...+|+|++++.++.+.
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~dva~~~~~l~~~~ 214 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA---------RRVGQPEDVANAILFLAANG 214 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhcCC
Confidence 999999987664 68899999998765431100000001122222221111 12346799999999999866
Q ss_pred C-Cc-cEEecCCCc
Q 013467 345 H-VG-PFNLGNPGE 356 (442)
Q Consensus 345 ~-~g-~~~i~~~~~ 356 (442)
. .| .|++.++..
T Consensus 215 ~~~G~~~~v~gg~~ 228 (230)
T PRK07041 215 FTTGSTVLVDGGHA 228 (230)
T ss_pred CcCCcEEEeCCCee
Confidence 3 35 788877654
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=146.70 Aligned_cols=213 Identities=12% Similarity=0.109 Sum_probs=143.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---ccCCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HFGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~------------~~ 178 (442)
..+++++||||+|+||+.++++|+++|++|++++|+.+...+.... .....++.++.+|+.+. .+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3467999999999999999999999999999999864322211111 11123577788888664 23
Q ss_pred CCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+|||+||...... ..+++...+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~-------------- 152 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT-------------- 152 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC--------------
Confidence 46899999998642211 223466788999999999988774 3444 899999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|...+.+++.++.+ .|+++..++||++.++....... ...+........++ .-
T Consensus 153 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~--~~~~~~~~~~~~~~---------~~ 219 (257)
T PRK09242 153 --HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS--DPDYYEQVIERTPM---------RR 219 (257)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC--ChHHHHHHHhcCCC---------CC
Confidence 2223467999999999999988654 48999999999998875311000 11222222222221 12
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGN 353 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~ 353 (442)
+...+|++.++..++.... .| .+.+.+
T Consensus 220 ~~~~~~va~~~~~l~~~~~~~~~g~~i~~~g 250 (257)
T PRK09242 220 VGEPEEVAAAVAFLCMPAASYITGQCIAVDG 250 (257)
T ss_pred CcCHHHHHHHHHHHhCcccccccCCEEEECC
Confidence 4457999999999986542 34 455543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=145.72 Aligned_cols=200 Identities=17% Similarity=0.056 Sum_probs=136.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
|+|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. ..++|+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 47999999999999999999999999999998643322211111 01245677888886641 236899
Q ss_pred EEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||+||......... .++..+++|+.++.++.+. +++.+. ++|++||...+. +..
T Consensus 81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~~ 144 (270)
T PRK05650 81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM----------------QGP 144 (270)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------------CCC
Confidence 999999754432222 3455788998887776655 456665 899999976542 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
....|+.+|++.+.+.+.++.+ .|+++++++||.+..+...... ............ ...+++
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 211 (270)
T PRK05650 145 AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLL-------------EKSPIT 211 (270)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHh-------------hcCCCC
Confidence 3468999999988888887765 3899999999999876432110 011111111111 113578
Q ss_pred HHHHHHHHHHHHcCCC
Q 013467 330 VSDLVEGLMRLMEGEH 345 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~ 345 (442)
++|+|+.++.++++..
T Consensus 212 ~~~vA~~i~~~l~~~~ 227 (270)
T PRK05650 212 AADIADYIYQQVAKGE 227 (270)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-16 Score=144.95 Aligned_cols=211 Identities=13% Similarity=0.084 Sum_probs=143.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++++++||||+|+||..+++.|+++|++|++++|+.....+...... ...++.++.+|+.+.. ..++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL 83 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45689999999999999999999999999999886432111111110 1245677888876531 1358
Q ss_pred CEEEEecccCCCCc-------------ccCChhHHHHHhHHHHHHHHHHHH----Hc-C-CeEEEeecCccccCCCCCCC
Q 013467 182 DQIYHLACPASPVH-------------YKFNPVKTIKTNVVGTLNMLGLAK----RV-G-ARFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 182 d~Vih~A~~~~~~~-------------~~~~~~~~~~~nv~gt~~ll~~a~----~~-g-~r~i~iSS~~vy~~~~~~~~ 242 (442)
|+|||+||...... ..+.+...+++|+.++..+++.+. +. . .++|++||...|+..
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~----- 158 (253)
T PRK08217 84 NGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM----- 158 (253)
T ss_pred CEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC-----
Confidence 99999998643211 112345678899999987765443 32 2 379999998766421
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
....|+.+|.+.+.+++.++++ .|++++.++||++.++... ...+.+........
T Consensus 159 ------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~----~~~~~~~~~~~~~~------ 216 (253)
T PRK08217 159 ------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTA----AMKPEALERLEKMI------ 216 (253)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc----ccCHHHHHHHHhcC------
Confidence 2367999999999999988765 4899999999999887531 11123322222222
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPG 355 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~ 355 (442)
....+.+++|+++++..++.... .| ++++.++-
T Consensus 217 ---~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 217 ---PVGRLGEPEEIAHTVRFIIENDYVTGRVLEIDGGL 251 (253)
T ss_pred ---CcCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCCCc
Confidence 12246688999999999987643 45 88887653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-16 Score=146.02 Aligned_cols=213 Identities=17% Similarity=0.150 Sum_probs=141.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++++||||+|+||++++++|+++|++|++++|+..... ...... ..++.++.+|+.+.. +..+|
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA-AVAASL-GERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-CCeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4569999999999999999999999999999998643221 111111 235778888987652 23589
Q ss_pred EEEEecccCCCCc---ccCChhHHHHHhHHHHHHHHHHHHH---c-CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH---YKFNPVKTIKTNVVGTLNMLGLAKR---V-GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 183 ~Vih~A~~~~~~~---~~~~~~~~~~~nv~gt~~ll~~a~~---~-g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
+||||||...... ..+.+.+.+++|+.++..+++.+.. . +.++|++||...+. +...
T Consensus 83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~~ 146 (261)
T PRK08265 83 ILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------------AQTG 146 (261)
T ss_pred EEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc----------------CCCC
Confidence 9999998643221 2234667889999999988887643 2 24899999976431 1112
Q ss_pred CChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|...+.+++.++.+. |+++.+|+||.+..+....-...... ........ ......+...+|
T Consensus 147 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~-~~~~~~~~--------~~p~~r~~~p~d 217 (261)
T PRK08265 147 RWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRA-KADRVAAP--------FHLLGRVGDPEE 217 (261)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchh-HHHHhhcc--------cCCCCCccCHHH
Confidence 3579999999999999887653 89999999998876532100000000 00011000 011123567899
Q ss_pred HHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 333 LVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 333 va~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+|+++.+++..+. .| .+.+.++
T Consensus 218 va~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 218 VAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred HHHHHHHHcCccccCccCcEEEECCC
Confidence 9999999997543 34 5666555
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-16 Score=144.33 Aligned_cols=201 Identities=14% Similarity=0.062 Sum_probs=138.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
+++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.++|
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEE-AAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD 84 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHH-HHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4689999999999999999999999999999986432211 11111 1146778888876541 23699
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+|||+++....... .+.....+++|+.++.++++++.+. +. ++|++||...+. +..
T Consensus 85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~~ 148 (237)
T PRK07326 85 VLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN----------------FFA 148 (237)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------------CCC
Confidence 99999986543211 1234567889999999988887542 33 799999976442 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|+..+.+++.++.+ .|++++++|||.+..+..... .. . .....+..+
T Consensus 149 ~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~-------------~~-------~--~~~~~~~~~ 206 (237)
T PRK07326 149 GGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT-------------PS-------E--KDAWKIQPE 206 (237)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc-------------cc-------h--hhhccCCHH
Confidence 2367999999999888887543 489999999999876532100 00 0 000136789
Q ss_pred HHHHHHHHHHcCCCC---ccEEecCCC
Q 013467 332 DLVEGLMRLMEGEHV---GPFNLGNPG 355 (442)
Q Consensus 332 Dva~ai~~~l~~~~~---g~~~i~~~~ 355 (442)
|+++++..++..+.. +...+..+.
T Consensus 207 d~a~~~~~~l~~~~~~~~~~~~~~~~~ 233 (237)
T PRK07326 207 DIAQLVLDLLKMPPRTLPSKIEVRPSR 233 (237)
T ss_pred HHHHHHHHHHhCCccccccceEEecCC
Confidence 999999999988754 255555443
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-16 Score=144.71 Aligned_cols=213 Identities=14% Similarity=0.041 Sum_probs=142.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++++||||+|+||++++++|+++|++|++++|+.....+ ....+. ..++.++.+|+.+.. +.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL-AVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH-HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 356789999999999999999999999999999986432211 111111 235667778876641 23
Q ss_pred CCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+|||+||...... ..++++..+++|+.++..+++.+.. .+. +||++||....
T Consensus 86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~---------------- 149 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSE---------------- 149 (254)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhc----------------
Confidence 5899999999643221 1234667899999998888887653 343 89999997532
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|+||++..+....... ...+........+ ...+
T Consensus 150 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~--~~~~~~~~~~~~p---------~~~~ 218 (254)
T PRK08085 150 LGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE--DEAFTAWLCKRTP---------AARW 218 (254)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc--CHHHHHHHHhcCC---------CCCC
Confidence 112223679999999999999987754 8999999999998874311000 0111111222111 2246
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|++.++.+++.... .| ...+.+|
T Consensus 219 ~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 219 GDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred cCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 678999999999987543 35 4444443
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=147.38 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=142.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+..... .+...+ ...++.++.+|+.+.. +.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLD-EVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34679999999999999999999999999999998643221 111111 1235778888887652 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH-----cCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~-----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+|||+||....... .+++...+++|+.++.++++++.. .+. +||++||....
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~--------------- 151 (263)
T PRK07814 87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGR--------------- 151 (263)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcccccc---------------
Confidence 68999999986433222 234667899999999999999863 343 89999996532
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+. ++++..|+||.+..+....-... ..+........ ....+
T Consensus 152 -~~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~---------~~~~~ 219 (263)
T PRK07814 152 -LAGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAAN--DELRAPMEKAT---------PLRRL 219 (263)
T ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCC--HHHHHHHHhcC---------CCCCC
Confidence 122234679999999999999987754 57899999998876532100000 11111111111 11234
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+|+++++++.... .| .+.+.++
T Consensus 220 ~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 220 GDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred cCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 578999999999986542 23 4555443
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=145.76 Aligned_cols=197 Identities=11% Similarity=0.042 Sum_probs=138.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+|++++||||+|+||+.++++|+++|++|++++|+..... .+.... ...++.++.+|+.+.. +.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE-ALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999999999998643221 111111 1246778889987642 135
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||+||....... .++....+++|+.++.++++.+ ++.+. ++|++||...++.
T Consensus 84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 148 (241)
T PRK07454 84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNA--------------- 148 (241)
T ss_pred CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcC---------------
Confidence 8999999986433221 1235667889999988877765 34443 8999999877632
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|...+.+++.++++ .|+++++||||.+-.+.... .. ....+ ....++
T Consensus 149 -~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~--~~-------------~~~~~----~~~~~~ 208 (241)
T PRK07454 149 -FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDT--ET-------------VQADF----DRSAML 208 (241)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccc--cc-------------ccccc----ccccCC
Confidence 222367999999999998887654 48999999999987764210 00 00000 012357
Q ss_pred CHHHHHHHHHHHHcCCCCc
Q 013467 329 FVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~~g 347 (442)
..+|+|++++.++..+...
T Consensus 209 ~~~~va~~~~~l~~~~~~~ 227 (241)
T PRK07454 209 SPEQVAQTILHLAQLPPSA 227 (241)
T ss_pred CHHHHHHHHHHHHcCCccc
Confidence 8999999999999888654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=147.09 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=140.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||.+++++|+++|++|++++|+ .. .+.....+ ...++.++.+|+.+.. +.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EA-VSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HH-HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 346799999999999999999999999999999986 22 12211111 1235778888887641 23
Q ss_pred CCCEEEEecccCCCC-ccc----CChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~-~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++|||||..... ... +.++..+++|+.++..+++++ ++.+.++|++||...+.
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQA--------------- 146 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcC---------------
Confidence 589999999975321 111 235667889999987776654 34445899999976542
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.|..+.........-..+........... .....+
T Consensus 147 -~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 220 (272)
T PRK08589 147 -ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWM-----TPLGRL 220 (272)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhcc-----CCCCCC
Confidence 11223679999999999999987754 799999999998776321000000000000000000000 011235
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+++++.+++..+. .| .+.+.++
T Consensus 221 ~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg 251 (272)
T PRK08589 221 GKPEEVAKLVVFLASDDSSFITGETIRIDGG 251 (272)
T ss_pred cCHHHHHHHHHHHcCchhcCcCCCEEEECCC
Confidence 678999999999987543 34 4555544
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=146.07 Aligned_cols=213 Identities=14% Similarity=0.052 Sum_probs=139.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc---------------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL--------------- 177 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~--------------- 177 (442)
++++++||||+|+||.+++++|++.|++|++.++......+.....+ ....+..+..|+.+..
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 45799999999999999999999999999887543222211111111 1123455666665421
Q ss_pred ---cCCCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHc--C-CeEEEeecCccccCCCCCCCCCCCC
Q 013467 178 ---LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 178 ---~~~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~--g-~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
..++|+||||||........+ .++..+++|+.++..+++++... . .++|++||...+.
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI------------ 150 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc------------
Confidence 126999999999643322222 25678889999999999877543 2 3899999987542
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|++.+.+++.++.+. |+++.+|.||.|.++....... .......... ....
T Consensus 151 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~---~~~~~~~~~~--------~~~~ 215 (252)
T PRK12747 151 ----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS---DPMMKQYATT--------ISAF 215 (252)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc---CHHHHHHHHh--------cCcc
Confidence 22223679999999999999887654 8999999999998874210000 0011111110 0012
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+..++|+++++.+++.... .| .+.+.+|
T Consensus 216 ~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 216 NRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred cCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 347789999999999887543 35 5555544
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=145.49 Aligned_cols=213 Identities=16% Similarity=0.107 Sum_probs=139.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++++||||+|+||.++++.|+++|++|++++|+.....+ ....+. ..++.++++|+.+.. +.++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQA-AADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999986432211 111111 245677888887642 2358
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||........ +..+..+++|+.++..+++.+.. .+ .++|++||...+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 144 (256)
T PRK08643 81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV---------------- 144 (256)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc----------------
Confidence 9999999864332221 23566788999998877776643 22 4899999976431
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-------CchHHHHHHHHHcCCCcEEecCC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-------GRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
+......|+.+|...+.+++.++.+ .|+++++|+||++.++...... ..-........... +
T Consensus 145 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------ 216 (256)
T PRK08643 145 GNPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD--I------ 216 (256)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc--C------
Confidence 1112367999999999998888764 4899999999999876421000 00000000011110 0
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+...+|++.++.+++.... .| .+.+.+|
T Consensus 217 -~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg 252 (256)
T PRK08643 217 -TLGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDGG 252 (256)
T ss_pred -CCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 11245678999999999987543 35 5555544
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=144.00 Aligned_cols=212 Identities=13% Similarity=0.135 Sum_probs=143.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++|+||||+|+||..++++|+++|++|++++|+ . ..+.....+ ...++.++.+|+.+.. +.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-T-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-c-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999886 2 212222111 1245778889987642 22
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++||+||....... ..+++..+++|+.++..+++++. +.+. ++|++||...+..
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 156 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG-------------- 156 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC--------------
Confidence 58999999997543221 12356788999999877776654 4444 8999999876521
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|.+.+.+++.++++. |+++.+|+||.+..+........ .......... + ....+
T Consensus 157 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~--~-------~~~~~ 223 (258)
T PRK06935 157 --GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD--KNRNDEILKR--I-------PAGRW 223 (258)
T ss_pred --CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC--hHHHHHHHhc--C-------CCCCC
Confidence 1123579999999999999988754 89999999999887642110000 1111111111 1 11246
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|++..+.+++.... .| ++.+.++
T Consensus 224 ~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 224 GEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred CCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 778999999999887543 35 5666554
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-16 Score=143.98 Aligned_cols=193 Identities=16% Similarity=0.109 Sum_probs=136.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.+++++||||+|+||.+++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.+
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKA-VAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 34689999999999999999999999999999986432211 11111 1235778888886542 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+|||++|....... .++++..+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---------------- 148 (239)
T PRK07666 85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK---------------- 148 (239)
T ss_pred ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc----------------
Confidence 9999999986543221 12356778999999999888775 3444 899999976542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+ .|++++++|||.+.++... .. .... +. ...++
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~--------~~---~~~~------~~---~~~~~ 208 (239)
T PRK07666 149 GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAV--------DL---GLTD------GN---PDKVM 208 (239)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchh--------hc---cccc------cC---CCCCC
Confidence 1222356999999999998887654 4899999999998876320 00 0000 01 12457
Q ss_pred CHHHHHHHHHHHHcCC
Q 013467 329 FVSDLVEGLMRLMEGE 344 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~ 344 (442)
..+|+|+.+..++.++
T Consensus 209 ~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 209 QPEDLAEFIVAQLKLN 224 (239)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8899999999999876
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-16 Score=145.29 Aligned_cols=213 Identities=12% Similarity=0.073 Sum_probs=141.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||+.++++|+++|++|++++|............ ...++.++.+|+.+.. +.++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEA-LGRKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 35679999999999999999999999999999887432111111111 1245778888887651 2358
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|++|||||....... .++++..+++|+.++..+.+++. +.+ .++|++||...+..
T Consensus 85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~--------------- 149 (251)
T PRK12481 85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG--------------- 149 (251)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC---------------
Confidence 999999997543221 23467789999999888877663 333 38999999876521
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||.+-.+....... ........... ++ ...+.
T Consensus 150 -~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~--~p-------~~~~~ 217 (251)
T PRK12481 150 -GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRA--DTARNEAILER--IP-------ASRWG 217 (251)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhccc--ChHHHHHHHhc--CC-------CCCCc
Confidence 111257999999999999988774 48999999999987653210000 01111111211 11 12356
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|++.++.+++.... .| .+.+.++
T Consensus 218 ~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 218 TPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred CHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 78999999999987543 34 4555443
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=144.27 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=140.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++++||||+|+||.+++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELD-QLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999999999998643222 111111 1235677888886641 236
Q ss_pred CCEEEEecccCCCC-c----ccCChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+|||+||..... . ..++++..+++|+.++..++++ +++.+. ++|++||...+..
T Consensus 84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-------------- 149 (254)
T PRK07478 84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-------------- 149 (254)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc--------------
Confidence 89999999964321 1 1123567899999887776554 444544 8999999765421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|++.+.+++.++++. |+++.+|+||.+-.+........ ........... ....+
T Consensus 150 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~---------~~~~~ 217 (254)
T PRK07478 150 -GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDT--PEALAFVAGLH---------ALKRM 217 (254)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCC--HHHHHHHHhcC---------CCCCC
Confidence 11223679999999999999987764 79999999999876632100000 11111111111 11235
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+++++++++.++. .| .+.+.++
T Consensus 218 ~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 248 (254)
T PRK07478 218 AQPEEIAQAALFLASDAASFVTGTALLVDGG 248 (254)
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCeEEeCCc
Confidence 678999999999987543 34 5555544
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=142.87 Aligned_cols=207 Identities=12% Similarity=0.047 Sum_probs=141.3
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----------
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL----------- 177 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~----------- 177 (442)
+...++++|+||||+|+||+.++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA-AVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999986432111 11111 1235778888886641
Q ss_pred -cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
+..+|+|||++|........ +.++..+.+|+.++.++++.+.+ .+. +||++||...+.
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------ 152 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV------------ 152 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc------------
Confidence 23579999999965432211 23566789999999998866643 454 899999976431
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++....... -..+....... . ..
T Consensus 153 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~--~~~~~~~~~~~--~-------~~ 217 (256)
T PRK06124 153 ----ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA--DPAVGPWLAQR--T-------PL 217 (256)
T ss_pred ----CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc--ChHHHHHHHhc--C-------CC
Confidence 1112367999999999998887665 38999999999999875211000 01111111111 1 11
Q ss_pred EeccCHHHHHHHHHHHHcCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~ 345 (442)
..+++.+|++++++.++.++.
T Consensus 218 ~~~~~~~~~a~~~~~l~~~~~ 238 (256)
T PRK06124 218 GRWGRPEEIAGAAVFLASPAA 238 (256)
T ss_pred CCCCCHHHHHHHHHHHcCccc
Confidence 247889999999999998763
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=142.95 Aligned_cols=208 Identities=13% Similarity=0.110 Sum_probs=138.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++++||||+|+||++++++|+++|+.|++.+|+.....+ ..... ..++.++.+|+.+.. +.++|
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEA-LAAEL-GERVKIFPANLSDRDEVKALGQKAEADLEGVD 82 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 45699999999999999999999999998888775322111 11111 235677888876541 34689
Q ss_pred EEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHH----cC-CeEEEeecCc-cccCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSE-VYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 183 ~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g-~r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|||+||...... ...++...+++|+.++.++++++.+ .+ .+||++||.. .++.+
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------------- 147 (245)
T PRK12936 83 ILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP--------------- 147 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC---------------
Confidence 9999999754321 1234667889999999988887642 33 3899999965 33321
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
....|+.+|.+.+.+++.++++ .|+++++++||.+..+.... ............. ....+..
T Consensus 148 --~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~---------~~~~~~~ 212 (245)
T PRK12936 148 --GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK----LNDKQKEAIMGAI---------PMKRMGT 212 (245)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc----cChHHHHHHhcCC---------CCCCCcC
Confidence 1256999999988888777654 38999999999876643210 0011111111111 1223567
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+|+++++..++..+. .| .+++.++
T Consensus 213 ~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 213 GAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred HHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 8999999998886543 35 7887765
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-16 Score=143.79 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=135.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c----CCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L----LEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~----~~~d~Vih 186 (442)
|++|+||||+|+||.+++++|+++|++|++++|+.... +.+.. ...++.++.+|+.+.. + ...|.+||
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVL-DELHT--QSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHH--hcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 35899999999999999999999999999999853221 11111 1235677888886642 1 23689999
Q ss_pred ecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 187 LACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 187 ~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+||...... ..+..+..+++|+.++.++++++... +.++|++||.... .+......|
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~----------------~~~~~~~~Y 141 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE----------------LALPRAEAY 141 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc----------------cCCCCCchh
Confidence 998543211 11224568999999999999988752 4589999986522 111123579
Q ss_pred HHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
+.+|...+.+++.++. ..|+++++++||.++++..... ... . ..++..+|+++.
T Consensus 142 ~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~----------------~~~---~----~~~~~~~~~a~~ 198 (240)
T PRK06101 142 GASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN----------------TFA---M----PMIITVEQASQE 198 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC----------------CCC---C----CcccCHHHHHHH
Confidence 9999999999988764 4589999999999998742110 000 0 013678999999
Q ss_pred HHHHHcCCCCccE
Q 013467 337 LMRLMEGEHVGPF 349 (442)
Q Consensus 337 i~~~l~~~~~g~~ 349 (442)
++..++.....++
T Consensus 199 i~~~i~~~~~~~~ 211 (240)
T PRK06101 199 IRAQLARGKSHIY 211 (240)
T ss_pred HHHHHhcCCCEEE
Confidence 9999988654444
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=146.63 Aligned_cols=208 Identities=19% Similarity=0.134 Sum_probs=139.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~~~ 180 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+..... .+...+. ...+..+.+|+.+.. +.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~-~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELA-ALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45679999999999999999999999999999998643211 1111111 234555568876641 246
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|+||||||........ +.+++.+++|+.++.++++.+.. .+.+||++||...+. +
T Consensus 86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 149 (296)
T PRK05872 86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA----------------A 149 (296)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC----------------C
Confidence 89999999975432222 23567899999999999888743 234899999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...+.+++.+..+ .|+++.++.||++..+........ . .....+....+. ....++.
T Consensus 150 ~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~-~~~~~~~~~~~~-------p~~~~~~ 220 (296)
T PRK05872 150 APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-L-PAFRELRARLPW-------PLRRTTS 220 (296)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-c-hhHHHHHhhCCC-------cccCCCC
Confidence 222367999999999999887654 489999999999876632110000 0 111111111111 1224677
Q ss_pred HHHHHHHHHHHHcCCCCc
Q 013467 330 VSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~~g 347 (442)
.+|++++++.++.+....
T Consensus 221 ~~~va~~i~~~~~~~~~~ 238 (296)
T PRK05872 221 VEKCAAAFVDGIERRARR 238 (296)
T ss_pred HHHHHHHHHHHHhcCCCE
Confidence 899999999999875533
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=143.66 Aligned_cols=202 Identities=14% Similarity=0.072 Sum_probs=137.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++|+||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+.+.. ..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLK-ELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45679999999999999999999999999999998643211 111111 1235677888876541 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----c---------CCeEEEeecCccccCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----V---------GARFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~---------g~r~i~iSS~~vy~~~~~~~~ 242 (442)
++|+|||++|....... ...+...+++|+.++.++++++.. . +.++|++||...+.
T Consensus 86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------- 158 (258)
T PRK06949 86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR------- 158 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-------
Confidence 58999999996433221 124667789999999998887642 2 13899999977542
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+ .|+++++|+||+++++.... .+............+
T Consensus 159 ---------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~---~~~~~~~~~~~~~~~----- 221 (258)
T PRK06949 159 ---------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHH---HWETEQGQKLVSMLP----- 221 (258)
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchh---ccChHHHHHHHhcCC-----
Confidence 2223367999999999999998765 48999999999999875311 001111111111111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...+...+|+++++.+++..+
T Consensus 222 ----~~~~~~p~~~~~~~~~l~~~~ 242 (258)
T PRK06949 222 ----RKRVGKPEDLDGLLLLLAADE 242 (258)
T ss_pred ----CCCCcCHHHHHHHHHHHhChh
Confidence 123555799999999998754
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=142.66 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=139.7
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCCEE
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVDQI 184 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d~V 184 (442)
|+|||++|+||++++++|+++|++|++++|......+.....+ ....+.++.+|+.+.. +..+|+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 5899999999999999999999999999886422211111111 1224678888886642 1357999
Q ss_pred EEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCc-cccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSE-VYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
||++|...... ....++..+++|+.++.++++.+.. .+. +||++||.. +++.+
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~----------------- 143 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA----------------- 143 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC-----------------
Confidence 99999753211 1234667889999999999998864 344 899999965 44321
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|...+.+++.+.++ .|+++++++||.+.++... .....+........+ ...+.+++
T Consensus 144 ~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~ 210 (239)
T TIGR01830 144 GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTD----KLSEKVKKKILSQIP---------LGRFGTPE 210 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhh----hcChHHHHHHHhcCC---------cCCCcCHH
Confidence 2257999999999988887654 4899999999988765321 111122222222211 12356789
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
|++++++.++..+. .| +||+.++
T Consensus 211 ~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 211 EVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 99999998885542 23 7888654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=143.77 Aligned_cols=196 Identities=19% Similarity=0.101 Sum_probs=134.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-------------cCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-------------LLEVD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------~~~~d 182 (442)
|++++||||+|+||+.++++|+++|++|++++|+..... .........++.++.+|+.+.. ..++|
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLA-ALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 468999999999999999999999999999998643211 1111122346788888887641 33579
Q ss_pred EEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC-CeEEEeecCc-cccCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG-ARFLLTSTSE-VYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g-~r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~ 252 (442)
+||||||......+. ++.+..+++|+.++.++++++. +.+ .++|++||.. .++.
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------- 143 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ---------------- 143 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC----------------
Confidence 999999975443222 2356789999999999988874 334 4899999965 3332
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
.....|+.+|...+.+++.++.+ .++++.+++||.+..+...... ......... .....+.
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~----~~~~~~~~~-----------~~~~~~~ 207 (260)
T PRK08267 144 -PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTS----NEVDAGSTK-----------RLGVRLT 207 (260)
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccccccc----chhhhhhHh-----------hccCCCC
Confidence 12367999999999999888654 4899999999998765321100 000000000 0111355
Q ss_pred HHHHHHHHHHHHcCC
Q 013467 330 VSDLVEGLMRLMEGE 344 (442)
Q Consensus 330 v~Dva~ai~~~l~~~ 344 (442)
.+|++++++.+++..
T Consensus 208 ~~~va~~~~~~~~~~ 222 (260)
T PRK08267 208 PEDVAEAVWAAVQHP 222 (260)
T ss_pred HHHHHHHHHHHHhCC
Confidence 699999999999754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=144.64 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=142.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc-----------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL-----------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLK-KAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 45679999999999999999999999999999998643221 111111 1235778888887641 13
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++|||||....... .+++...+++|+.++..+++. +++.+. ++|++||...+.
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~--------------- 149 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE--------------- 149 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC---------------
Confidence 58999999996543222 234667889998886665554 445554 899999987541
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC-------CCchHHHHHHHHHcCCCcEEecC
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+..... ...........+... .
T Consensus 150 -~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 221 (263)
T PRK08339 150 -PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP--I----- 221 (263)
T ss_pred -CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc--C-----
Confidence 22223579999999999999987764 89999999999876521000 000001111111111 1
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
....+...+|+|.++.+++..+. .| .+.+.+|...
T Consensus 222 --p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~ 260 (263)
T PRK08339 222 --PLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRLN 260 (263)
T ss_pred --CcccCcCHHHHHHHHHHHhcchhcCccCceEEECCCccc
Confidence 12246678999999999987543 35 5655555433
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=146.59 Aligned_cols=208 Identities=14% Similarity=0.088 Sum_probs=131.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc-----ccC-CCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP-----LLL-EVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~-----~~~-~~d~Vih~ 187 (442)
+++|+||||+|+||++++++|+++|++|++++|+..... .+.... ....+.++.+|+.+. .+. ++|+||||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVT-ALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 458999999999999999999999999999998642211 111110 123577788888664 222 79999999
Q ss_pred cccCCCCccc----CChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 188 ACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 188 A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
||........ +.....+++|+.++.++.+. +++.+. +||++||...+.. ......
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~----------------~~~~~~ 144 (257)
T PRK09291 81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT----------------GPFTGA 144 (257)
T ss_pred CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC----------------CCCcch
Confidence 9865332111 22456788899987766554 455565 8999999754311 112367
Q ss_pred hHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC-CCcEEecCCceeEeccCHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva 334 (442)
|+.+|...|.+++.+..+ .|+++++||||.+..+.. ......+. ..... .......+.....++...+|++
T Consensus 145 Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK09291 145 YCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFN----DTMAETPK-RWYDPARNFTDPEDLAFPLEQFDPQEMI 219 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccch----hhhhhhhh-hhcchhhHHHhhhhhhccccCCCHHHHH
Confidence 999999999998877654 599999999988643211 00011110 00000 0000001112233557888888
Q ss_pred HHHHHHHcCCC
Q 013467 335 EGLMRLMEGEH 345 (442)
Q Consensus 335 ~ai~~~l~~~~ 345 (442)
+.++.++..+.
T Consensus 220 ~~~~~~l~~~~ 230 (257)
T PRK09291 220 DAMVEVIPADT 230 (257)
T ss_pred HHHHHHhcCCC
Confidence 88888876654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=144.07 Aligned_cols=198 Identities=18% Similarity=0.107 Sum_probs=133.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-------------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-------------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------~~~~d~ 183 (442)
++|+||||+|+||.+++++|+++|++|++++|+..... .. ...+++.+.+|+.+.. ...+|.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~-~~----~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ 77 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVA-RM----NSLGFTGILLDLDDPESVERAADEVIALTDNRLYG 77 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhH-HH----HhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeE
Confidence 47999999999999999999999999999988643211 11 1124566777775531 135799
Q ss_pred EEEecccCCCCc----ccCChhHHHHHhHHHHHHH----HHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVH----YKFNPVKTIKTNVVGTLNM----LGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~l----l~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+||++|...... ..+.++..+++|+.|+.++ ++.+++.+. ++|++||...+. +..
T Consensus 78 ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~~ 141 (256)
T PRK08017 78 LFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------------STP 141 (256)
T ss_pred EEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc----------------CCC
Confidence 999998643221 1123557889999998775 566666665 899999964331 112
Q ss_pred CCChhHHHHHHHHHHHHHHH---hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCC-CcEEecCCceeEeccCH
Q 013467 255 VRSCYDEGKRTAETLTMDYH---RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v 330 (442)
....|+.+|...|.+.+.+. ...++++++++||.+..+.. .. ..... .......+...+.++++
T Consensus 142 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~ 209 (256)
T PRK08017 142 GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT--------DN----VNQTQSDKPVENPGIAARFTLGP 209 (256)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh--------hc----ccchhhccchhhhHHHhhcCCCH
Confidence 23679999999998877653 34589999999987754321 11 11100 11111122233457999
Q ss_pred HHHHHHHHHHHcCCCCc
Q 013467 331 SDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~~g 347 (442)
+|+++++..+++++...
T Consensus 210 ~d~a~~~~~~~~~~~~~ 226 (256)
T PRK08017 210 EAVVPKLRHALESPKPK 226 (256)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 99999999999887665
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=142.46 Aligned_cols=193 Identities=12% Similarity=0.107 Sum_probs=132.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc-----c------C
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL-----L------L 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----~------~ 179 (442)
.+++|+||||+|+||++++++|+++| ++|++++|+.....+.....+ ...++.++.+|+.+.. + .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 35689999999999999999999995 899999987553222111111 2236788888886542 1 3
Q ss_pred CCCEEEEecccCCCC--cccCC--hhHHHHHhHHHHHH----HHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV--HYKFN--PVKTIKTNVVGTLN----MLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~--~~~~~--~~~~~~~nv~gt~~----ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++||++|..... .+... ..+.+++|+.++.. +++.+++.+. +||++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~--------------- 151 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER--------------- 151 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC---------------
Confidence 699999999875331 11111 12468999998776 5666677665 999999975431
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|++...+.+.+.. ..|+++++++||++..+.. . .... . ...
T Consensus 152 -~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~--------~-------~~~~-----~----~~~ 206 (253)
T PRK07904 152 -VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMS--------A-------HAKE-----A----PLT 206 (253)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchh--------c-------cCCC-----C----CCC
Confidence 111235699999999987776644 4589999999999986421 0 0000 0 124
Q ss_pred cCHHHHHHHHHHHHcCCCCc
Q 013467 328 QFVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~g 347 (442)
+..+|+|+.++.++.++...
T Consensus 207 ~~~~~~A~~i~~~~~~~~~~ 226 (253)
T PRK07904 207 VDKEDVAKLAVTAVAKGKEL 226 (253)
T ss_pred CCHHHHHHHHHHHHHcCCCE
Confidence 67899999999999876554
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=143.04 Aligned_cols=213 Identities=19% Similarity=0.147 Sum_probs=140.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+..... .....+ ....+.++.+|+.+.. +.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQ-AVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 44568999999999999999999999999999998543211 111111 1234667788876541 23
Q ss_pred CCCEEEEecccCCC-----CcccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-----VHYKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.+|+|||+||.... ....+.++..+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 150 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-------------- 150 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC--------------
Confidence 58999999985321 1111235668899999988887766 44444 899999865431
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|++.+.+++.++++. |+++..|.||.+..+........ ...........+ ...
T Consensus 151 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~ 217 (252)
T PRK07035 151 --PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN--DAILKQALAHIP---------LRR 217 (252)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC--HHHHHHHHccCC---------CCC
Confidence 22234679999999999999987654 89999999999876532100000 111222222111 123
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+++++.+++.+.. .| .+.+.++
T Consensus 218 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 218 HAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred cCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 5678999999999887653 35 5555443
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=140.72 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=137.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------cCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--------LLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vih 186 (442)
++++|+||||+|+||++++++|+++|++|+++++......+.+... ..+.++..|+.+.. ..++|+|||
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE---TGATAVQTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH---hCCeEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 4579999999999999999999999999988876432222221111 13456677775531 235899999
Q ss_pred ecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 187 LACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 187 ~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+||....... .++++..+++|+.++..++..+... +.++|++||..... .+......|
T Consensus 82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------~~~~~~~~Y 146 (237)
T PRK12742 82 NAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR---------------MPVAGMAAY 146 (237)
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc---------------CCCCCCcch
Confidence 9986533221 1246778999999999987666543 24899999965311 122334679
Q ss_pred HHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
+.+|++.|.+++.++.+ .|+++.+|+||.+..+... . .. ..........+ ...+...+|++++
T Consensus 147 ~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~-~-~~---~~~~~~~~~~~---------~~~~~~p~~~a~~ 212 (237)
T PRK12742 147 AASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANP-A-NG---PMKDMMHSFMA---------IKRHGRPEEVAGM 212 (237)
T ss_pred HHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccc-c-cc---HHHHHHHhcCC---------CCCCCCHHHHHHH
Confidence 99999999999888765 4799999999999776421 1 10 11111111111 1235678999999
Q ss_pred HHHHHcCCC---Cc-cEEecC
Q 013467 337 LMRLMEGEH---VG-PFNLGN 353 (442)
Q Consensus 337 i~~~l~~~~---~g-~~~i~~ 353 (442)
+.+++.... .| .+.+.+
T Consensus 213 ~~~l~s~~~~~~~G~~~~~dg 233 (237)
T PRK12742 213 VAWLAGPEASFVTGAMHTIDG 233 (237)
T ss_pred HHHHcCcccCcccCCEEEeCC
Confidence 999987543 35 454443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=142.79 Aligned_cols=191 Identities=13% Similarity=0.083 Sum_probs=134.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccccccc---------cCCCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEPL---------LLEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~---------~~~~d~V 184 (442)
||+|+||||+|+||.+++++|+++|++|++++|+.+...+..... ....++.++.+|+.+.. ...+|+|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 568999999999999999999999999999998653222111111 12346788999987652 1247999
Q ss_pred EEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||++|....... .+++.+.+++|+.++.++++++.. .+. +||++||..... +...
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~ 144 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR----------------GRAS 144 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC----------------CCCC
Confidence 999986443221 123456788999999999887653 344 899999865321 1112
Q ss_pred CChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|+..+.+++.++. +.|+++.+++||.+.++.. .+...+ ...+..++|
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~----------------~~~~~~-------~~~~~~~~~ 201 (243)
T PRK07102 145 NYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMT----------------AGLKLP-------GPLTAQPEE 201 (243)
T ss_pred CcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhh----------------hccCCC-------ccccCCHHH
Confidence 25699999999999988754 3489999999999987531 000000 112567899
Q ss_pred HHHHHHHHHcCCC
Q 013467 333 LVEGLMRLMEGEH 345 (442)
Q Consensus 333 va~ai~~~l~~~~ 345 (442)
+++.++.+++++.
T Consensus 202 ~a~~i~~~~~~~~ 214 (243)
T PRK07102 202 VAKDIFRAIEKGK 214 (243)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=142.48 Aligned_cols=215 Identities=14% Similarity=0.061 Sum_probs=141.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
++++++||||+|+||++++++|+++|++|++++|... ..+...... ...++.++.+|+.+.. +..+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 83 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI 83 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4579999999999999999999999999999988642 111111111 1235678888887641 2358
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+||........ ...+..+++|+.++.++++++.. .+. ++|++||..... .+
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------~~ 148 (263)
T PRK08226 84 DILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM---------------VA 148 (263)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc---------------cC
Confidence 9999999975432222 22455788999999998887643 333 899999865310 11
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc----CCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI----DDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
......|+.+|...|.+++.++.+. |+++..++||.+.++.... ........++..+..+.+ ..
T Consensus 149 ~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p---------~~ 219 (263)
T PRK08226 149 DPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP---------LR 219 (263)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC---------CC
Confidence 1123579999999999999887654 8999999999998863210 000011222233332211 12
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+++++..++.... .| .+.+.++
T Consensus 220 ~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg 252 (263)
T PRK08226 220 RLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252 (263)
T ss_pred CCCCHHHHHHHHHHHcCchhcCCcCceEeECCC
Confidence 35678999999999886432 34 4444444
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=141.56 Aligned_cols=200 Identities=17% Similarity=0.149 Sum_probs=141.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC---CCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG---NPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~------------~ 178 (442)
..+++++|||||++||..++++|+++|++|+.+.|+.+.- +.+...+. ...++++..|+.+.. .
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL-~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKL-EALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHH-HHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 4567999999999999999999999999999999864322 22222222 245788999987651 1
Q ss_pred CCCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHH----HHHHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLG----LAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~----~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
..+|++|||||......+.+ ...+++++|+.++..+-. -..+.+. .+|.++|...|
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~--------------- 147 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGL--------------- 147 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhc---------------
Confidence 25999999999866543332 356689999998665544 4456665 99999998876
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.|......|+.||...-.+...+..+ .|++|+++.||.+..... + . .+..... .....-
T Consensus 148 -~p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~------------~-~-~~~~~~~---~~~~~~ 209 (265)
T COG0300 148 -IPTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF------------D-A-KGSDVYL---LSPGEL 209 (265)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc------------c-c-ccccccc---ccchhh
Confidence 34444588999999988877776654 489999999987765421 1 0 1111110 012245
Q ss_pred ccCHHHHHHHHHHHHcCCCCc
Q 013467 327 FQFVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~g 347 (442)
++..+|+|+..+.++++...-
T Consensus 210 ~~~~~~va~~~~~~l~~~k~~ 230 (265)
T COG0300 210 VLSPEDVAEAALKALEKGKRE 230 (265)
T ss_pred ccCHHHHHHHHHHHHhcCCce
Confidence 778899999999999886543
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=141.94 Aligned_cols=202 Identities=19% Similarity=0.152 Sum_probs=132.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+||||+|+||+.++++|+++|++|++++++.....+.....+ ...++.++.+|+.+.. +..+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999877653322222221111 1235778888886541 2368
Q ss_pred CEEEEecccCCCCc-c----cCChhHHHHHhHHHHHHHHHHHHH----c----CCeEEEeecCcc-ccCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLAKR----V----GARFLLTSTSEV-YGDPLQHPQKETYW 247 (442)
Q Consensus 182 d~Vih~A~~~~~~~-~----~~~~~~~~~~nv~gt~~ll~~a~~----~----g~r~i~iSS~~v-y~~~~~~~~~E~~~ 247 (442)
|+|||+||...... . .+++...+.+|+.++..+++.+.+ . +.+||++||... ++..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~---------- 151 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP---------- 151 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC----------
Confidence 99999999653321 1 123456789999999888754432 1 126999999754 3211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.....|+.+|...+.+++.++++. |+++++++||.+..+..... .. ...........+ .
T Consensus 152 ------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~-~~--~~~~~~~~~~~~---------~ 213 (248)
T PRK06947 152 ------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASG-GQ--PGRAARLGAQTP---------L 213 (248)
T ss_pred ------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccccc-CC--HHHHHHHhhcCC---------C
Confidence 112469999999999998887664 89999999999988743111 11 111111111111 1
Q ss_pred EeccCHHHHHHHHHHHHcCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~ 345 (442)
..+..++|+++.++.++.++.
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~ 234 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAA 234 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccc
Confidence 124568999999999988764
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-16 Score=145.09 Aligned_cols=202 Identities=14% Similarity=0.076 Sum_probs=132.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC----CCceeEEeccccccc------------cCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+|+||||+|+||.+++++|+++|++|++++|......+.+...+. ...+.++.+|+.+.. +.++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 389999999999999999999999999999863222222221111 112345667776531 2468
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHH----HHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVV----GTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~----gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+||........ ++....+++|+. ++..+++.+++.+. +||++||...+..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~---------------- 144 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA---------------- 144 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC----------------
Confidence 9999999975432211 234567788888 67778888877765 8999999876532
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCccCCCch-HHHHHHHHHcCCCcEEecCCceeEe
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCIDDGRV-VSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|...+.+++.++.+. ++++.+++||.+.++......... .........++. ....
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 215 (251)
T PRK07069 145 EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV---------PLGR 215 (251)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC---------CCCC
Confidence 1223579999999999998877653 488999999999887531100000 001111111111 1224
Q ss_pred ccCHHHHHHHHHHHHcCC
Q 013467 327 FQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~ 344 (442)
+.+++|++++++.++..+
T Consensus 216 ~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 216 LGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 567899999999987654
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=140.84 Aligned_cols=209 Identities=17% Similarity=0.141 Sum_probs=138.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
|+++||||+|+||++++++|+++|++|+++.|......+...... ...++.++.+|+.+.. ...+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 479999999999999999999999999999883222111111111 1236778888887642 23589
Q ss_pred EEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|||+||........ +.+...++.|+.++..+++. +++.+. ++|++||..... +.
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~----------------~~ 144 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK----------------GQ 144 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------CC
Confidence 999999865432211 23566788999997775544 455565 899999965321 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.....|+.+|...+.+++.++++ .|+++.+++||++.++... .+...+...+....+. ..+...
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~----~~~~~~~~~~~~~~~~---------~~~~~~ 211 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVM----AMREDVLNSIVAQIPV---------GRLGRP 211 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccc----ccchHHHHHHHhcCCC---------CCCcCH
Confidence 12367999999999888887654 3899999999999887531 1112233333322211 124456
Q ss_pred HHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 331 SDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+|+++++..++.++. .| .+.+.++
T Consensus 212 ~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 212 EEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred HHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 899999988876643 24 6666655
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=142.10 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=136.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---cccCCCceeEEeccccccc------------cCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+++++||||+|+||++++++|+++|++|++++|+.....+... ......++.++.+|+.+.. +.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999986432211111 1111346788889987652 246
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccc-cCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVY-GDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy-~~~~~~~~~E~~~~~~ 250 (442)
+|+|||+||....... .+.+...+++|+.++.++++++. +.+. +||++||.... +.+
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 148 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLP------------- 148 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCC-------------
Confidence 9999999997543221 12345678899999988888764 4454 89999996543 211
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+...|+.+|.+.+.+++.+..+ .++++++++||++.++... . . + . ....
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~--------~-----~-~-------~---~~~~ 201 (248)
T PRK08251 149 ---GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNA--------K-----A-K-------S---TPFM 201 (248)
T ss_pred ---CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhh--------c-----c-c-------c---CCcc
Confidence 12367999999999998887754 3799999999998775310 0 0 0 0 0124
Q ss_pred cCHHHHHHHHHHHHcCCCCccE
Q 013467 328 QFVSDLVEGLMRLMEGEHVGPF 349 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~g~~ 349 (442)
+..+|.|++++.+++++...+|
T Consensus 202 ~~~~~~a~~i~~~~~~~~~~~~ 223 (248)
T PRK08251 202 VDTETGVKALVKAIEKEPGRAA 223 (248)
T ss_pred CCHHHHHHHHHHHHhcCCCeEE
Confidence 6789999999999987655444
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=140.45 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=140.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-eCCCCCCcccccccc--CCCceeEEeccccccc-----c-------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-DNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L------- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 178 (442)
..+++|+||||+|+||.+++++|+++|++|+++ +|..... +.....+ ...++.++.+|+.+.. +
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAA-QELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 346799999999999999999999999999998 7753221 1111111 1245788888887642 1
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+|||++|....... .+.++..+++|+.++.++++.+.. .+. +||++||...+..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------------- 148 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG------------- 148 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC-------------
Confidence 269999999997532211 123567789999998888877653 344 7999999765421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.+.++ .|+++++++||.+..+.... ............ .....
T Consensus 149 ---~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~----~~~~~~~~~~~~---------~~~~~ 212 (247)
T PRK05565 149 ---ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSS----FSEEDKEGLAEE---------IPLGR 212 (247)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccc----cChHHHHHHHhc---------CCCCC
Confidence 112256999999999888887664 38999999999987654211 111111111111 01124
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|++++++.++.... .| .+++.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 213 LGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred CCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 5678999999999987653 24 5666544
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=141.34 Aligned_cols=212 Identities=11% Similarity=0.046 Sum_probs=140.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.++. +.++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE-EAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 368999999999999999999999999999998643221 111111 1246778888887641 2368
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC-C-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+|||+||....... .+.+...+++|+.++.++++++.+ .+ . ++|++||...+.
T Consensus 80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------- 143 (252)
T PRK07677 80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD---------------- 143 (252)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc----------------
Confidence 999999985332111 123567899999999999988842 22 3 899999875431
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.+...... ...-+.....+.+..+ ...+
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~ 213 (252)
T PRK07677 144 AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADK-LWESEEAAKRTIQSVP---------LGRL 213 (252)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeeccccccccccc-ccCCHHHHHHHhccCC---------CCCC
Confidence 1112256999999999999987665 389999999999885432100 0000222222222211 1236
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+++++..++.... .| .+.+.++
T Consensus 214 ~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 244 (252)
T PRK07677 214 GTPEEIAGLAYFLLSDEAAYINGTCITMDGG 244 (252)
T ss_pred CCHHHHHHHHHHHcCccccccCCCEEEECCC
Confidence 678999999988886542 34 4555544
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-16 Score=149.78 Aligned_cols=177 Identities=16% Similarity=0.089 Sum_probs=120.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc---ccccCCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV---MHHFGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~D~~~~~------------~ 178 (442)
..+++|+||||+|+||.+++++|+++|++|++++|+.....+.. ........+.++.+|+.+.. +
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 35679999999999999999999999999999998643222111 11111245778889987642 2
Q ss_pred CCCCEEEEecccCCCCc--ccCChhHHHHHhHHH----HHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~--~~~~~~~~~~~nv~g----t~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
.++|+||||||...+.. ..+..+..+++|+.+ +..+++.+++.+. +||++||...+.... .+.++..+. .
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~~--~ 170 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQWE--R 170 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccCcc--c
Confidence 35899999999754322 223466778999999 5666667766654 999999986432111 111111111 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEE--eeCceeCCC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIA--RIFNTYGPR 293 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~ii--Rp~~v~G~~ 293 (442)
+..+...|+.+|++.+.+++.++++. |+++.++ .||.|..+.
T Consensus 171 ~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 171 RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 33455789999999999999987764 6665554 799887653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=147.55 Aligned_cols=199 Identities=14% Similarity=0.115 Sum_probs=135.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~-~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEA-LAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 345689999999999999999999999999999986432111 11111 1235677888886642 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHH----HHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNML----GLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll----~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.+|++|||||....... .+..+..+++|+.++.++. ..+++.+. +||++||...+..
T Consensus 85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~-------------- 150 (334)
T PRK07109 85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS-------------- 150 (334)
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC--------------
Confidence 69999999996433221 1235667888888766654 44455554 8999999887632
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
......|+.+|...+.+++.+..+ .++++++|+||.+..|.. ... ...+... .....
T Consensus 151 --~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~--------~~~-~~~~~~~-------~~~~~ 212 (334)
T PRK07109 151 --IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF--------DWA-RSRLPVE-------PQPVP 212 (334)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh--------hhh-hhhcccc-------ccCCC
Confidence 122367999999999988877654 369999999999876531 111 1111110 01122
Q ss_pred eccCHHHHHHHHHHHHcCCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~ 345 (442)
.+...+|+|++++.++.++.
T Consensus 213 ~~~~pe~vA~~i~~~~~~~~ 232 (334)
T PRK07109 213 PIYQPEVVADAILYAAEHPR 232 (334)
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 45678999999999998763
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=142.42 Aligned_cols=156 Identities=14% Similarity=0.042 Sum_probs=114.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d~ 183 (442)
||+++||||+|+||++++++|+++|++|++++|+..... .+ ...++.++.+|+.+. ...++|+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE-AL----AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HH----HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 468999999999999999999999999999998532211 11 112456777887653 1236899
Q ss_pred EEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH---cC-CeEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR---VG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~---~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
|||+||........ +++...+++|+.++.++++++.. .+ .++|++||...+. +...
T Consensus 76 vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~ 139 (274)
T PRK05693 76 LINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL----------------VTPF 139 (274)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC----------------CCCC
Confidence 99999965433222 23567889999999998887643 23 3899999865431 1112
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCC
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~ 292 (442)
...|+.+|...+.+++.++.+ .|+++++++||.+..+
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 367999999999998887654 5899999999999765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=140.12 Aligned_cols=212 Identities=15% Similarity=0.066 Sum_probs=142.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||.+++++|+++|++|++++|+.... +.....+ ...++.++.+|+.+.. +.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL-EKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3467999999999999999999999999999998864322 1121111 1235677888886641 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||....... .+.+...+++|+.++..+++++. +.+ .++|++||....-.
T Consensus 86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------- 152 (253)
T PRK05867 86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII------------- 152 (253)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC-------------
Confidence 69999999997543221 12356678999999998888764 333 37999988653210
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
........|+.+|++.+.+++.++++. |+++.+|+||.+-.+... .. ......+....+ ...
T Consensus 153 -~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~----~~-~~~~~~~~~~~~---------~~r 217 (253)
T PRK05867 153 -NVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVE----PY-TEYQPLWEPKIP---------LGR 217 (253)
T ss_pred -CCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccc----cc-hHHHHHHHhcCC---------CCC
Confidence 001112579999999999999987754 899999999999776421 11 111112222111 124
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+|+++.+++.... .| .+.+.+|
T Consensus 218 ~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred CcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 6678999999999997543 34 5665554
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=140.84 Aligned_cols=214 Identities=13% Similarity=0.045 Sum_probs=142.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||.+++++|+++|++|++++|......+ ....+ ...++.++.+|+.+.. +.
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDK-GLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 455789999999999999999999999999999875432211 11111 1235778889987652 23
Q ss_pred CCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCc-cccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~ 249 (442)
.+|+|||+||...... ..+.+...+++|+.++..+++.+. +.+. +||++||.. .++
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 152 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELG-------------- 152 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCC--------------
Confidence 5899999999754322 122366678899999887777653 3444 899999964 332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC----chHHHHHHHHHcCCCcEEecCCc
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG----RVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
......|+.+|.+.+.+++.++++. |+++..|+||.+..+....... .....+........+
T Consensus 153 ---~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 221 (265)
T PRK07097 153 ---RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP-------- 221 (265)
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC--------
Confidence 1223679999999999999988764 8999999999998874311000 000111111111111
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|++..++.++.... .| .+.+.++
T Consensus 222 -~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 256 (265)
T PRK07097 222 -AARWGDPEDLAGPAVFLASDASNFVNGHILYVDGG 256 (265)
T ss_pred -ccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 1235668999999999997642 34 5555554
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=139.74 Aligned_cols=203 Identities=13% Similarity=0.047 Sum_probs=136.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++++++||||+|+||.+++++|++.|++|+++++............ ....+..+.+|+.+. .+.++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTA-LGRRFLSLTADLRKIDGIPALLERAVAEFGHI 86 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 45679999999999999999999999999998876422111000111 123567788888663 12368
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|++|||||....... .+++.+.+++|+.++.++++++. +.+ .++|++||...+...
T Consensus 87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 152 (253)
T PRK08993 87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG-------------- 152 (253)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC--------------
Confidence 999999997543221 23477889999999998888764 333 389999998765321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
.....|+.+|.+.+.+++.++.+ .|+++..++||.+-.+........ .......... ++ ...+.
T Consensus 153 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~--~~~~~~~~~~--~p-------~~r~~ 219 (253)
T PRK08993 153 --IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRAD--EQRSAEILDR--IP-------AGRWG 219 (253)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccc--hHHHHHHHhc--CC-------CCCCc
Confidence 11247999999999999988776 489999999999977632100000 0111111111 11 12366
Q ss_pred CHHHHHHHHHHHHcCC
Q 013467 329 FVSDLVEGLMRLMEGE 344 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~ 344 (442)
..+|+++.+++++.+.
T Consensus 220 ~p~eva~~~~~l~s~~ 235 (253)
T PRK08993 220 LPSDLMGPVVFLASSA 235 (253)
T ss_pred CHHHHHHHHHHHhCcc
Confidence 7899999999999765
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=141.26 Aligned_cols=201 Identities=14% Similarity=0.080 Sum_probs=136.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----------cCCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----------LLEVD 182 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~d 182 (442)
.++++|+||||+|+||..++++|+++|++|++++|+.....+.........++.++.+|+.+.. +..+|
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 3456899999999999999999999999999999864322111111111246778888887642 24589
Q ss_pred EEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cC-CeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|||+||........ +.....+++|+.|+.++++.+.. .+ .++|++||...+. +.
T Consensus 83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 146 (263)
T PRK09072 83 VLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI----------------GY 146 (263)
T ss_pred EEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc----------------CC
Confidence 999999865432211 23566788999999999888753 33 3789888865321 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.....|+.+|...+.+++.++.+ .++++.++.||.+..+.. .... . ... ......+..+
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~--------~~~~-----~-~~~----~~~~~~~~~~ 208 (263)
T PRK09072 147 PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMN--------SEAV-----Q-ALN----RALGNAMDDP 208 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccch--------hhhc-----c-ccc----ccccCCCCCH
Confidence 12367999999999888887765 379999999998866431 1100 0 000 0001135678
Q ss_pred HHHHHHHHHHHcCCCCcc
Q 013467 331 SDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~~g~ 348 (442)
+|+|++++.++++...+.
T Consensus 209 ~~va~~i~~~~~~~~~~~ 226 (263)
T PRK09072 209 EDVAAAVLQAIEKERAER 226 (263)
T ss_pred HHHHHHHHHHHhCCCCEE
Confidence 999999999999875544
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=135.86 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=136.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
+++++||||+|+||++++++|+++|++|++++|+.....+.. ...++.++.+|+.+.. +.++|+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 77 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGL----RQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRA 77 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHH----HHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccE
Confidence 458999999999999999999999999999998643222111 1123567788876541 235899
Q ss_pred EEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC---CeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG---ARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+||+||....... .++++..+++|+.++..+.+.+. +.+ .++|++||..... +
T Consensus 78 lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~----------------~ 141 (236)
T PRK06483 78 IIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK----------------G 141 (236)
T ss_pred EEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------------C
Confidence 9999986433211 23467788999999887766553 333 3899999865321 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
......|+.+|.+.+.+++.++.+. ++++.+|+||.+.-+.. . . ...........++. .+...
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~--~-~---~~~~~~~~~~~~~~---------~~~~~ 206 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEG--D-D---AAYRQKALAKSLLK---------IEPGE 206 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCC--C-C---HHHHHHHhccCccc---------cCCCH
Confidence 1123579999999999999998875 58999999998743211 1 1 11111222221111 23457
Q ss_pred HHHHHHHHHHHcCCC-Cc-cEEecCC
Q 013467 331 SDLVEGLMRLMEGEH-VG-PFNLGNP 354 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~-~g-~~~i~~~ 354 (442)
+|+++++.+++.... .| .+.+.+|
T Consensus 207 ~~va~~~~~l~~~~~~~G~~i~vdgg 232 (236)
T PRK06483 207 EEIIDLVDYLLTSCYVTGRSLPVDGG 232 (236)
T ss_pred HHHHHHHHHHhcCCCcCCcEEEeCcc
Confidence 999999999986432 34 5555544
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-15 Score=138.89 Aligned_cols=211 Identities=18% Similarity=0.125 Sum_probs=135.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++++|+||||+|+||.+++++|+++|++|++++|+..... .....+ ...++.+|+.+.. ..++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK-AAADEV---GGLFVPTDVTDEDAVNALFDTAAETYGSV 80 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHc---CCcEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45679999999999999999999999999999998532211 111111 1246677776541 1358
Q ss_pred CEEEEecccCCCCc---c---cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCc-cccCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH---Y---KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSE-VYGDPLQHPQKETYWGN 249 (442)
Q Consensus 182 d~Vih~A~~~~~~~---~---~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~ 249 (442)
|+|||+||...+.. . .+.+...+++|+.++..+++.+ ++.+. ++|++||.. +++..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~------------ 148 (255)
T PRK06057 81 DIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA------------ 148 (255)
T ss_pred CEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC------------
Confidence 99999998653211 1 1235678889999988777665 34444 899999854 44321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.....|+.+|++.+.+++.++.+ .|+++++++||++.++............. ...+. .+ + ...
T Consensus 149 ----~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~-~~~~~--~~---~----~~~ 214 (255)
T PRK06057 149 ----TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERA-ARRLV--HV---P----MGR 214 (255)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHH-HHHHh--cC---C----CCC
Confidence 12256999998888777765443 38999999999998875311000001111 01111 01 1 125
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+..++|+++++..++.... .| .+.+.++
T Consensus 215 ~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 215 FAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 7889999999998886542 24 5555543
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=139.43 Aligned_cols=204 Identities=15% Similarity=0.065 Sum_probs=135.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||.+++++|+++|++|+++.|............+ ...++.++.+|+.+.. ..
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 84 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG 84 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999988875332222222111 1235667888887642 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHH----HHHHHcC--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNML----GLAKRVG--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll----~~a~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+|||+||........ +.++..+++|+.++..++ +.+++.+ .++|++||...+
T Consensus 85 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~--------------- 149 (261)
T PRK08936 85 TLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ--------------- 149 (261)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc---------------
Confidence 589999999975443222 235567899988876554 4445554 389999996533
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+........ ...........+ ...
T Consensus 150 -~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~ 217 (261)
T PRK08936 150 -IPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD--PKQRADVESMIP---------MGY 217 (261)
T ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC--HHHHHHHHhcCC---------CCC
Confidence 233334679999999888888876544 89999999999988743111000 111112222111 124
Q ss_pred ccCHHHHHHHHHHHHcCC
Q 013467 327 FQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~ 344 (442)
+...+|+++.+.+++..+
T Consensus 218 ~~~~~~va~~~~~l~s~~ 235 (261)
T PRK08936 218 IGKPEEIAAVAAWLASSE 235 (261)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 666899999999988754
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-15 Score=142.54 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=135.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
...+++|+||||+|+||.+++++|+++|++|++++|+.+... .....+ ....+.++.+|+.+.. +
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLD-AVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 345679999999999999999999999999999998643211 111111 1234678888887642 2
Q ss_pred CCCCEEEEecccCCCCccc------CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~------~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|+||||||........ ......+++|+.++.++++++ ++.+. ++|++||.+++..
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 184 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE----------- 184 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC-----------
Confidence 3689999999975433222 224567899999988887765 35554 9999999765531
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|++.+.+++.++.+. |+++.+++||.+-.+.... ... . .+
T Consensus 185 ----~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~------------~~~------~-~~--- 238 (293)
T PRK05866 185 ----ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP------------TKA------Y-DG--- 238 (293)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc------------ccc------c-cC---
Confidence 11123679999999999988876653 8999999999776653200 000 0 00
Q ss_pred EeccCHHHHHHHHHHHHcCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~ 345 (442)
...+..+++|+.++.++++..
T Consensus 239 ~~~~~pe~vA~~~~~~~~~~~ 259 (293)
T PRK05866 239 LPALTADEAAEWMVTAARTRP 259 (293)
T ss_pred CCCCCHHHHHHHHHHHHhcCC
Confidence 123578999999999998753
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=142.29 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=139.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +.+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 345699999999999999999999999999999986432211111110 1234567788886541 235
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|+|||+||....... .+++...+++|+.++.++++++.. .+.+||++||...+. +
T Consensus 87 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------------~ 150 (264)
T PRK07576 87 IDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------------P 150 (264)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc----------------C
Confidence 8999999985432211 123556788999999999988753 334899999976431 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHH--HHHHHHHcCCCcEEecCCceeEec
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVS--NFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|...+.+++.++.+ .|+++++++||.+.+.... ..... .+....... . ....+
T Consensus 151 ~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~---~~~~~~~~~~~~~~~~--~-------~~~~~ 218 (264)
T PRK07576 151 MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGM---ARLAPSPELQAAVAQS--V-------PLKRN 218 (264)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHH---hhcccCHHHHHHHHhc--C-------CCCCC
Confidence 222367999999999999988665 4799999999988753210 00000 011111111 1 12345
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+++++++++..+. .| .+.+.++
T Consensus 219 ~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg 249 (264)
T PRK07576 219 GTKQDIANAALFLASDMASYITGVVLPVDGG 249 (264)
T ss_pred CCHHHHHHHHHHHcChhhcCccCCEEEECCC
Confidence 678999999999997543 35 4444444
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=162.23 Aligned_cols=223 Identities=18% Similarity=0.176 Sum_probs=142.8
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc----cCCCceeEEeccccccc----------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH----FGNPNFELIRHDVVEPL---------- 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~---------- 177 (442)
....+++|+||||+|+||++++++|+++|++|++++|+..... ..... .....+..+.+|+.+..
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~-~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~ 488 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAE-AVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA 488 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHH-HHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999998643221 11111 12234667888887641
Q ss_pred --cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcC--CeEEEeecCccccCCCCCCCCCC
Q 013467 178 --LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 178 --~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g--~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+.++|+||||||........ ..+...+++|+.+...+++.+ ++.+ .+||++||...+.
T Consensus 489 ~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~---------- 558 (676)
T TIGR02632 489 LAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY---------- 558 (676)
T ss_pred HhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC----------
Confidence 23689999999975432222 235667889998877665443 4444 4899999965431
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCcee-CCCCccCCCchHHHHHHHHHcCCCc----EE
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTY-GPRMCIDDGRVVSNFVAQALRKEPL----TV 317 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~----~~ 317 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+|+.|+ |.+.... . +..... ...+... ..
T Consensus 559 ------~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~-~-~~~~~~--~~~~~~~~~~~~~ 628 (676)
T TIGR02632 559 ------AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDG-E-WREERA--AAYGIPADELEEH 628 (676)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccc-c-chhhhh--hcccCChHHHHHH
Confidence 1112368999999999999998775 37999999999987 4322100 0 000000 0000000 00
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+........+++.+|+|+++.+++.... .| ++++.+|.
T Consensus 629 ~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~ 670 (676)
T TIGR02632 629 YAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGV 670 (676)
T ss_pred HHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCc
Confidence 1111223457889999999999886542 35 67776653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-15 Score=138.32 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=142.0
Q ss_pred CCCCEEEEEcCCc-hhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc---cCCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAG-FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH---FGNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG-~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~------------ 177 (442)
.++++++||||+| .||+.+++.|+++|++|++.+|+.....+..... ....++.++.+|+.+..
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3457999999997 7999999999999999999988543222111111 12235778888886641
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
+..+|+||||||........ +.+...+++|+.++..+++.+. +.+ .++|++||...+
T Consensus 95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~------------- 161 (262)
T PRK07831 95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW------------- 161 (262)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc-------------
Confidence 23689999999964332221 2366678899999988887764 333 378888886543
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|++.+.+++.++.+ .|+++.+|+||.+..+...... -......+....+ .
T Consensus 162 ---~~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~---~~~~~~~~~~~~~---------~ 226 (262)
T PRK07831 162 ---RAQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT---SAELLDELAAREA---------F 226 (262)
T ss_pred ---CCCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc---CHHHHHHHHhcCC---------C
Confidence 12223367999999999999998865 4899999999999887431110 1222222222221 1
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGN 353 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~ 353 (442)
..+...+|+++++++++.... .| .+.+.+
T Consensus 227 ~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 227 GRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 245667999999999887653 35 444443
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=141.63 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=136.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~ 178 (442)
+++++++||||+++||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+.. +
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999999888764322222211111 1236778888987641 2
Q ss_pred CCCCEEEEecccCCCC------cc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV------HY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~------~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~ 243 (442)
.++|++|||||..... .. .+.....+++|+.+...+.+.+ ++.+. ++|++||...+.
T Consensus 86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 157 (260)
T PRK08416 86 DRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV-------- 157 (260)
T ss_pred CCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc--------
Confidence 3689999999864211 11 1234557788888766655443 44444 899999975321
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|++.+.+++.++.+. |+++.+|.||.+-.+....... ............+
T Consensus 158 --------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~--~~~~~~~~~~~~~------ 221 (260)
T PRK08416 158 --------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTN--YEEVKAKTEELSP------ 221 (260)
T ss_pred --------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccC--CHHHHHHHHhcCC------
Confidence 11223579999999999999988764 8999999999886542100000 0111111111111
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|++.++++++..+. .| .+.+.++
T Consensus 222 ---~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 222 ---LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred ---CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 1236678999999999987542 35 4555443
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=145.81 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=137.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~-~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQA-VAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 345689999999999999999999999999999986432221 11111 1235667788887641 24
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++|||||........ +.+++.+++|+.++.++.+++ ++.+. ++|++||...+.
T Consensus 84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~--------------- 148 (330)
T PRK06139 84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA--------------- 148 (330)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC---------------
Confidence 689999999975443332 235568999999998877765 34444 899999977552
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.+..+ .|++++++.||.+.++...... .+ .+... .....
T Consensus 149 -~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~-----~~-----~~~~~------~~~~~ 211 (330)
T PRK06139 149 -AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGA-----NY-----TGRRL------TPPPP 211 (330)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccc-----cc-----ccccc------cCCCC
Confidence 1122367999999888777776654 3799999999999887531100 00 01000 01123
Q ss_pred ccCHHHHHHHHHHHHcCCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~ 346 (442)
+...+|+|++++.+++++..
T Consensus 212 ~~~pe~vA~~il~~~~~~~~ 231 (330)
T PRK06139 212 VYDPRRVAKAVVRLADRPRA 231 (330)
T ss_pred CCCHHHHHHHHHHHHhCCCC
Confidence 56899999999999987654
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=147.32 Aligned_cols=174 Identities=18% Similarity=0.100 Sum_probs=123.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---ccCCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HFGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++++||||+|+||.+++++|+++|++|++++|+.....+.... .....++.++.+|+.+.. .
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999864322221111 112235788889986641 2
Q ss_pred CCCCEEEEecccCCCCc---ccCChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccc-cCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH---YKFNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVY-GDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~---~~~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy-~~~~~~~~~E~~~~~~ 250 (442)
..+|++|||||...... ..+.++..+.+|+.++..+.+.+. +...++|++||...+ +.....++.+.
T Consensus 92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~----- 166 (313)
T PRK05854 92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE----- 166 (313)
T ss_pred CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc-----
Confidence 35899999999754322 224577789999999877776654 333489999997643 32222222222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCC
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGP 292 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~ 292 (442)
.+..+...|+.||.+.+.++++++++ .|+++.++.||.+..+
T Consensus 167 ~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 167 RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 23445578999999999999998753 3799999999998765
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=137.99 Aligned_cols=215 Identities=21% Similarity=0.221 Sum_probs=154.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|+|+||||||++|++++++|+++|++|+++.|+....... . .++++...|+.+. .+.++|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~-----~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAAL-----A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhh-----c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 4799999999999999999999999999999864433222 1 6778888887765 567899999988643
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
. . .. ...........+..+.+. .++ +++++|....- . .....|..+|...|..+
T Consensus 75 ~-~----~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~-----------------~-~~~~~~~~~~~~~e~~l 129 (275)
T COG0702 75 D-G----SD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD-----------------A-ASPSALARAKAAVEAAL 129 (275)
T ss_pred c-c----cc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC-----------------C-CCccHHHHHHHHHHHHH
Confidence 2 1 11 222344444444444444 334 78888876542 1 22367999999999998
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHH-HHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC--Cc
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFV-AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH--VG 347 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~g 347 (442)
.+ .|+.++++|+..+|.... ..+. .....+.+....+. ...+++.++|++.++..++..+. ..
T Consensus 130 ~~----sg~~~t~lr~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~a~~~~~~l~~~~~~~~ 195 (275)
T COG0702 130 RS----SGIPYTTLRRAAFYLGAG--------AAFIEAAEAAGLPVIPRGI--GRLSPIAVDDVAEALAAALDAPATAGR 195 (275)
T ss_pred Hh----cCCCeEEEecCeeeeccc--------hhHHHHHHhhCCceecCCC--CceeeeEHHHHHHHHHHHhcCCcccCc
Confidence 55 589999999766655321 1112 22333333333333 37899999999999999998874 34
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCce
Q 013467 348 PFNLGNPGEFTMLELAQVVQETIDPNAKI 376 (442)
Q Consensus 348 ~~~i~~~~~~s~~dl~~~l~~~~g~~~~~ 376 (442)
+|.+++++..++.++++.+.+..|++..+
T Consensus 196 ~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 196 TYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred EEEccCCceecHHHHHHHHHHHhCCccee
Confidence 99999999999999999999999998877
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-15 Score=138.56 Aligned_cols=208 Identities=16% Similarity=0.130 Sum_probs=139.5
Q ss_pred CCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCC--------ccc--ccccc--CCCceeEEeccccccc---
Q 013467 115 KGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGR--------KEN--VMHHF--GNPNFELIRHDVVEPL--- 177 (442)
Q Consensus 115 ~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~--------~~~--~~~~~--~~~~v~~~~~D~~~~~--- 177 (442)
++++|+||||+| +||.+++++|+++|++|++++|+.... .+. +...+ ...++.++.+|+.+..
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 83 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPN 83 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 456899999995 799999999999999999999862111 000 11111 1235788889987642
Q ss_pred ---------cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----C-CeEEEeecCccccCCCC
Q 013467 178 ---------LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 178 ---------~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g-~r~i~iSS~~vy~~~~~ 239 (442)
+..+|+|||+||........ +.++..+.+|+.++.++++++... + .+||++||...++
T Consensus 84 ~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---- 159 (256)
T PRK12748 84 RVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG---- 159 (256)
T ss_pred HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC----
Confidence 23589999999875433222 235667899999999999887532 3 3899999976653
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
+......|+.+|++.+.+++.++.+ .+++++.++||.+..+... ...........
T Consensus 160 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~-------~~~~~~~~~~~--- 217 (256)
T PRK12748 160 ------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWIT-------EELKHHLVPKF--- 217 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCC-------hhHHHhhhccC---
Confidence 2222367999999999999888765 4899999999987765321 11111111110
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+...+|+++++..++.... .| .+++.++
T Consensus 218 ------~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 218 ------PQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred ------CCCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 01124457999999998886542 35 6666554
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-15 Score=139.21 Aligned_cols=215 Identities=16% Similarity=0.082 Sum_probs=142.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 34579999999999999999999999999999998643221111110 01235778888886541 235
Q ss_pred CCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+|||+||...... ..+++...+++|+.++..+++.+ .+.+. ++|++||...+.
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~--------------- 149 (253)
T PRK06172 85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG--------------- 149 (253)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc---------------
Confidence 799999999643221 12345677889999987776643 34444 899999987653
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|.+.+.+++.++.+. |+++.++.||.+-.+........ ............ ....+
T Consensus 150 -~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~~~~---------~~~~~ 218 (253)
T PRK06172 150 -AAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA-DPRKAEFAAAMH---------PVGRI 218 (253)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhccc-ChHHHHHHhccC---------CCCCc
Confidence 22234679999999999999987764 79999999998876542110000 011111111111 11235
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+++.+++++.... .| .+.+.++
T Consensus 219 ~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 219 GKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred cCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 678999999999987642 35 5566554
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=142.08 Aligned_cols=214 Identities=18% Similarity=0.081 Sum_probs=137.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
++++||||+|+||.+++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +..+|+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 479999999999999999999999999999886322111111110 1235778888887642 235899
Q ss_pred EEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
|||+||....... .+.++..+++|+.++..+++++. +.+ .++|++||..... +.
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~ 144 (254)
T TIGR02415 81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE----------------GN 144 (254)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC----------------CC
Confidence 9999987433211 12356778999999887776654 333 3899999965431 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEE------ecCCcee
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV------YGDGKQT 324 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 324 (442)
.....|+.+|++.+.+++.+..+. ++++.+++||.+..+.. ..+............ +......
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (254)
T TIGR02415 145 PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMW--------EEIDEETSEIAGKPIGEGFEEFSSEIAL 216 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhh--------hhhhhhhhhcccCchHHHHHHHHhhCCC
Confidence 123679999999999998876653 79999999998866531 111000000000000 0000012
Q ss_pred EeccCHHHHHHHHHHHHcCCC---CccEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VGPFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g~~~i~~~ 354 (442)
..+..++|+++++..++..+. .|.+...++
T Consensus 217 ~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~ 249 (254)
T TIGR02415 217 GRPSEPEDVAGLVSFLASEDSDYITGQSILVDG 249 (254)
T ss_pred CCCCCHHHHHHHHHhhcccccCCccCcEEEecC
Confidence 247788999999999998764 355554443
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=140.89 Aligned_cols=214 Identities=16% Similarity=0.097 Sum_probs=140.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|+.... +.+.... ..++.++.+|+.+.. +.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKL-ASLRQRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 3457999999999999999999999999999999864321 1111111 235677888876541 2368
Q ss_pred CEEEEecccCCCC-cc-c---C----ChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPV-HY-K---F----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 182 d~Vih~A~~~~~~-~~-~---~----~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
|++||+||..... .. . + .++..+++|+.++..+++++.. .+.++|++||...+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 148 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY------------- 148 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC-------------
Confidence 9999999964321 11 1 1 1456788999998888887753 334899999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCC----C-c--hHHHHHHHHHcCCCcEEec
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDD----G-R--VVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~----~-~--~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+. ++++.+|.||.+..+...... . . ............
T Consensus 149 ---~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 218 (263)
T PRK06200 149 ---PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAI------- 218 (263)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcC-------
Confidence 22223579999999999999988764 589999999998765321000 0 0 001111111111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC-C---Cc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE-H---VG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~-~---~g-~~~i~~~ 354 (442)
.....+...+|+++++++++..+ . .| .+.+.+|
T Consensus 219 --~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 219 --TPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred --CCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 11234667899999999998765 3 34 5555544
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=138.80 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=131.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEecccccc--------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEP-------------- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~-------------- 176 (442)
+++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ....+.++..|+.+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEK-VYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHH-HHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence 345799999999999999999999999999999986532211 11111 112344555665421
Q ss_pred cc-CCCCEEEEecccCCCC-c-cc---CChhHHHHHhHHHHHHHHHHHH----HcC-CeEEEeecCccccCCCCCCCCCC
Q 013467 177 LL-LEVDQIYHLACPASPV-H-YK---FNPVKTIKTNVVGTLNMLGLAK----RVG-ARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 177 ~~-~~~d~Vih~A~~~~~~-~-~~---~~~~~~~~~nv~gt~~ll~~a~----~~g-~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.+ ..+|+|||+||..... . .. +++...+++|+.++.++++++. +.+ .++|++||....
T Consensus 83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~----------- 151 (239)
T PRK08703 83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE----------- 151 (239)
T ss_pred HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc-----------
Confidence 12 4589999999964321 1 11 2345578999999888887764 334 489999985432
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc----CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA----GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~----g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
.+......|+.+|++.+.+++.++.+. ++++.+|+||+|+++.... ...+
T Consensus 152 -----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~------------~~~~--------- 205 (239)
T PRK08703 152 -----TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIK------------SHPG--------- 205 (239)
T ss_pred -----cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccc------------cCCC---------
Confidence 122233579999999999999887764 5999999999999875210 0001
Q ss_pred ceeEeccCHHHHHHHHHHHHcCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
.....+...+|++.++..++...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~ 228 (239)
T PRK08703 206 EAKSERKSYGDVLPAFVWWASAE 228 (239)
T ss_pred CCccccCCHHHHHHHHHHHhCcc
Confidence 11123457899999999998743
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=139.22 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=136.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc----------------c
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL----------------L 178 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~----------------~ 178 (442)
+++||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. +
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~ 82 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRAF 82 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999998764332222222111 1124556788887652 2
Q ss_pred CCCCEEEEecccCCCCcccC---------------ChhHHHHHhHHHHHHHHHHHHHc---------C--CeEEEeecCc
Q 013467 179 LEVDQIYHLACPASPVHYKF---------------NPVKTIKTNVVGTLNMLGLAKRV---------G--ARFLLTSTSE 232 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~---------------~~~~~~~~nv~gt~~ll~~a~~~---------g--~r~i~iSS~~ 232 (442)
.++|+||||||...+..... .....+++|+.++..+++++... + .++|++||..
T Consensus 83 g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~~ 162 (267)
T TIGR02685 83 GRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDAM 162 (267)
T ss_pred CCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhhh
Confidence 35999999999644322111 24567899999999988765321 1 2577777754
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHH
Q 013467 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQA 309 (442)
Q Consensus 233 vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~ 309 (442)
.. .+......|+.+|.+.+.+++.++.+ .|+++++|+||.+..+... . .......
T Consensus 163 ~~----------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~---~---~~~~~~~ 220 (267)
T TIGR02685 163 TD----------------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAM---P---FEVQEDY 220 (267)
T ss_pred cc----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcccc---c---hhHHHHH
Confidence 32 12233467999999999999998776 5899999999998765321 1 1111112
Q ss_pred HcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 310 LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
....++ + ..+...+|+++++++++.... .| .+.+.++.
T Consensus 221 ~~~~~~---~-----~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (267)
T TIGR02685 221 RRKVPL---G-----QREASAEQIADVVIFLVSPKAKYITGTCIKVDGGL 262 (267)
T ss_pred HHhCCC---C-----cCCCCHHHHHHHHHHHhCcccCCcccceEEECCce
Confidence 111111 0 124578999999999987642 35 45555443
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=136.93 Aligned_cols=202 Identities=14% Similarity=0.069 Sum_probs=136.9
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~ 179 (442)
.++++++||||+ +.||..++++|+++|++|++.+|+. +............+.++.+|+.+. .+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND--RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch--HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 356799999999 7999999999999999999998852 111111112223567888998764 123
Q ss_pred CCCEEEEecccCCCC--------cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV--------HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|++|||||...+. ...++++..+++|+.++..+++++... +.++|++||....
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-------------- 148 (252)
T PRK06079 83 KIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE-------------- 148 (252)
T ss_pred CCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc--------------
Confidence 589999999975321 111236678899999998888776542 2389999986532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|++.+.+++.++.+ .|+++.+|.||.|-.+....... ...+........+ ..
T Consensus 149 --~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~--~~~~~~~~~~~~p---------~~ 215 (252)
T PRK06079 149 --RAIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG--HKDLLKESDSRTV---------DG 215 (252)
T ss_pred --ccCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC--hHHHHHHHHhcCc---------cc
Confidence 11122367999999999999998875 48999999999987653210000 1122222222111 12
Q ss_pred eccCHHHHHHHHHHHHcCC
Q 013467 326 SFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~ 344 (442)
.+...+|+++++.+++...
T Consensus 216 r~~~pedva~~~~~l~s~~ 234 (252)
T PRK06079 216 VGVTIEEVGNTAAFLLSDL 234 (252)
T ss_pred CCCCHHHHHHHHHHHhCcc
Confidence 3667899999999999764
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=137.17 Aligned_cols=199 Identities=13% Similarity=0.069 Sum_probs=134.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc------cccccc--CCCceeEEeccccccc--------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE------NVMHHF--GNPNFELIRHDVVEPL-------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~--~~~~v~~~~~D~~~~~-------- 177 (442)
.++++++||||+|+||++++++|+++|++|++++|....... .....+ ...++.++.+|+.+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 345789999999999999999999999999999986532211 000001 1235677888886641
Q ss_pred ----cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cC-CeEEEeecCccccCCCCCCCCC
Q 013467 178 ----LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQKE 244 (442)
Q Consensus 178 ----~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g-~r~i~iSS~~vy~~~~~~~~~E 244 (442)
+.++|+|||+||........ +.++..+++|+.++.++++++.. .+ .++|++||......
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~-------- 155 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP-------- 155 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc--------
Confidence 13689999999975432222 23566788999999999998853 23 48899987532100
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
........|+.+|.+.|.+++.++.+. ++++.+|.|+.+... .+......+.
T Consensus 156 ------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t-----------~~~~~~~~~~-------- 210 (273)
T PRK08278 156 ------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIAT-----------AAVRNLLGGD-------- 210 (273)
T ss_pred ------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCcccc-----------HHHHhccccc--------
Confidence 111334789999999999999987764 899999999843221 0111111111
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
.....+...+|+++.++.++....
T Consensus 211 ~~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 211 EAMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred ccccccCCHHHHHHHHHHHhcCcc
Confidence 112246688999999999987653
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=135.97 Aligned_cols=196 Identities=17% Similarity=0.116 Sum_probs=133.8
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCCEE
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVDQI 184 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d~V 184 (442)
|+||||+|+||.+++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. ...+|++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6899999999999999999999999999875432222222211 1245788888886641 2357999
Q ss_pred EEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH-----HcCC-eEEEeecCc-cccCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSE-VYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 185 ih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~-----~~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~ 253 (442)
||++|...... ..+++...+++|+.++.++++++. +.+. +||++||.. .++.
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------------- 143 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN----------------- 143 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC-----------------
Confidence 99998654321 223467789999999999988652 2333 899999965 3321
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+.++.... . ...........++ ..+...
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~-~~~~~~~~~~~~~---------~~~~~~ 209 (239)
T TIGR01831 144 RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE----V-EHDLDEALKTVPM---------NRMGQP 209 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh----h-hHHHHHHHhcCCC---------CCCCCH
Confidence 12357999999999888887655 48999999999988765311 1 1111122221111 134567
Q ss_pred HHHHHHHHHHHcCCC
Q 013467 331 SDLVEGLMRLMEGEH 345 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~ 345 (442)
+|+++++.+++..+.
T Consensus 210 ~~va~~~~~l~~~~~ 224 (239)
T TIGR01831 210 AEVASLAGFLMSDGA 224 (239)
T ss_pred HHHHHHHHHHcCchh
Confidence 999999999988653
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-15 Score=139.67 Aligned_cols=211 Identities=18% Similarity=0.181 Sum_probs=140.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++++||||+|+||.+++++|+++|++|++++|...... ..++.++.+|+.+.. +..
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFGR 77 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 345679999999999999999999999999999988543221 135677888887642 235
Q ss_pred CCEEEEecccCCCCc-------------ccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCC
Q 013467 181 VDQIYHLACPASPVH-------------YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~-------------~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~ 242 (442)
+|+|||+||...... ..++++..+++|+.++..+++++.. .+. ++|++||...+.
T Consensus 78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 150 (266)
T PRK06171 78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE------- 150 (266)
T ss_pred CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC-------
Confidence 899999999643211 1123566889999999999888754 333 799999976542
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-Cc--------hHHHHHHHHH
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-GR--------VVSNFVAQAL 310 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-~~--------~~~~~~~~~~ 310 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+......... .. ....+...+.
T Consensus 151 ---------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (266)
T PRK06171 151 ---------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYT 221 (266)
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhc
Confidence 1122367999999999999998765 4899999999987522110000 00 0011111111
Q ss_pred cCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 311 RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 311 ~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..... ....+...+|+|.++.+++.... .| ++++.+|
T Consensus 222 ~~~~~-------p~~r~~~~~eva~~~~fl~s~~~~~itG~~i~vdgg 262 (266)
T PRK06171 222 KTSTI-------PLGRSGKLSEVADLVCYLLSDRASYITGVTTNIAGG 262 (266)
T ss_pred ccccc-------cCCCCCCHHHhhhheeeeeccccccceeeEEEecCc
Confidence 10011 12346678999999999887543 34 5555544
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-15 Score=138.04 Aligned_cols=215 Identities=12% Similarity=0.088 Sum_probs=142.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
+++++|+||||+|+||++++++|+++|++ |++++|....... ....+ ....+.++..|+.+.. +
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEA-QAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHH-HHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999998 9999885332211 11111 1235667778876541 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+|||++|....... .+.+...+++|+.++.++++++.. .+ .++|++||...++..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~----------- 151 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ----------- 151 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC-----------
Confidence 368999999996543221 122456789999999999887743 22 279999998766421
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC---chHHHHHHHHHcCCCcEEecCCc
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG---RVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
.....|+.+|...|.+++.++.+. +++++.++||+++++....... .....+....... .
T Consensus 152 -----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~ 217 (260)
T PRK06198 152 -----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAAT---------Q 217 (260)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhcc---------C
Confidence 123679999999999999887654 7999999999999875210000 0011112111111 1
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+++.+|++++++.++.... .| .+.+.++
T Consensus 218 ~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~ 253 (260)
T PRK06198 218 PFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQS 253 (260)
T ss_pred CccCCcCHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence 12356789999999999886543 34 5555543
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-15 Score=138.30 Aligned_cols=213 Identities=12% Similarity=0.093 Sum_probs=134.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d~V 184 (442)
|+++||||+|+||+.++++|+++|++|++++|+.....+.........++.++.+|+.+. .+.++|+|
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 589999999999999999999999999999986432211111111123567788888664 12469999
Q ss_pred EEecccCCCC---ccc---CChhHHHHHhHHHHHHHHHH----HH-HcC-CeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPV---HYK---FNPVKTIKTNVVGTLNMLGL----AK-RVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 185 ih~A~~~~~~---~~~---~~~~~~~~~nv~gt~~ll~~----a~-~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|||||..... ..+ +++...+.+|+.++..+... .. +.+ .+||++||.... .+
T Consensus 81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~----------------~~ 144 (259)
T PRK08340 81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVK----------------EP 144 (259)
T ss_pred EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccC----------------CC
Confidence 9999964211 111 12444567787776554433 32 233 389999998654 12
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCC-------CchHHH-HHHHHHcCCCcEEecCC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDD-------GRVVSN-FVAQALRKEPLTVYGDG 321 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~ 321 (442)
......|+.+|...+.+++.++.+. |+++..|.||.+-.+...... ....+. .........
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERT-------- 216 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccC--------
Confidence 2234679999999999999988764 799999999988765421000 000000 001111110
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+...+|+|+++++++..+. .| +..+.+|
T Consensus 217 -p~~r~~~p~dva~~~~fL~s~~~~~itG~~i~vdgg 252 (259)
T PRK08340 217 -PLKRTGRWEELGSLIAFLLSENAEYMLGSTIVFDGA 252 (259)
T ss_pred -CccCCCCHHHHHHHHHHHcCcccccccCceEeecCC
Confidence 12246678999999999998653 35 4555544
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-14 Score=139.58 Aligned_cols=198 Identities=18% Similarity=0.088 Sum_probs=132.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc-----c------cC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP-----L------LL 179 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~-----~------~~ 179 (442)
..++++++||||+|+||++++++|+++|++|++.++......+.....+ ...++.++.+|+.+. . +.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3456799999999999999999999999999999875332222222211 123577888888663 1 24
Q ss_pred CCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHH----c----C----CeEEEeecCccccCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----V----G----ARFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~----g----~r~i~iSS~~vy~~~~~~~~~ 243 (442)
++|+||||||...... ..+++...+++|+.++.++++++.. . + .++|++||...+..
T Consensus 89 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 161 (306)
T PRK07792 89 GLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG------- 161 (306)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC-------
Confidence 6899999999754422 1234667889999999999887642 1 1 28999999764421
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|.|+. ...+ ....+ ...... .
T Consensus 162 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t~~-------~~~~~----~~~~~~-~-- 216 (306)
T PRK07792 162 ---------PVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RTAM-------TADVF----GDAPDV-E-- 216 (306)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CCch-------hhhhc----cccchh-h--
Confidence 112357999999999999888765 589999999973 1111 01110 000000 0
Q ss_pred CceeEeccCHHHHHHHHHHHHcC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
.....++..+|++.++..++..
T Consensus 217 -~~~~~~~~pe~va~~v~~L~s~ 238 (306)
T PRK07792 217 -AGGIDPLSPEHVVPLVQFLASP 238 (306)
T ss_pred -hhccCCCCHHHHHHHHHHHcCc
Confidence 0112345789999999988865
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=135.76 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=139.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---cccCCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHFGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~~~~~v~~~~~D~~~~------------~~ 178 (442)
.++++++||||+|+||.+++++|+++|++|++++|+.....+... ......++.++.+|+.+. .+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999986432221111 111123566788888664 12
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||........ +.+...+++|+.+...+++.+ ++.+. ++|++||...+.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 151 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ-------------- 151 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC--------------
Confidence 3589999999965332222 235667888988876666554 44444 899999976542
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC------CCchHHHHHHHHHcCCCcEEecC
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID------DGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+..... .......+.........+
T Consensus 152 --~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 224 (265)
T PRK07062 152 --PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGI----- 224 (265)
T ss_pred --CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCC-----
Confidence 1122367999999999888887665 489999999999876532100 000001111111111111
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+...+|+|+++++++.... .| .+.+.+|
T Consensus 225 --p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg 260 (265)
T PRK07062 225 --PLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGG 260 (265)
T ss_pred --CcCCCCCHHHHHHHHHHHhCchhcccccceEEEcCc
Confidence 11246678999999999887532 35 5555544
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=134.38 Aligned_cols=203 Identities=16% Similarity=0.054 Sum_probs=134.4
Q ss_pred CCCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCc--cccccccCCCceeEEecccccc------------
Q 013467 113 KRKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRK--ENVMHHFGNPNFELIRHDVVEP------------ 176 (442)
Q Consensus 113 ~~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~------------ 176 (442)
..++++++||||+ +.||..++++|+++|++|++.+|+....+ +.+...+ ..+.++.+|+.+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHH
Confidence 3456799999998 59999999999999999999988632111 1111111 2345678888664
Q ss_pred ccCCCCEEEEecccCCCC--------cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPV--------HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.+.++|++|||||..... ...++++..+++|+.++..+++.+... +.++|++||....
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~----------- 153 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE----------- 153 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc-----------
Confidence 124589999999964321 111246778999999999988876432 2489999986532
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
.+......|+.+|++.+.+++.++.+ .|+++.+|.||.+-.+..... .. ............+
T Consensus 154 -----~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~~p-------- 218 (258)
T PRK07533 154 -----KVVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-DD-FDALLEDAAERAP-------- 218 (258)
T ss_pred -----cCCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-CC-cHHHHHHHHhcCC--------
Confidence 11122367999999999999988765 489999999998876531100 00 1112222221111
Q ss_pred eeEeccCHHHHHHHHHHHHcCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...+...+|++.++++++..+
T Consensus 219 -~~r~~~p~dva~~~~~L~s~~ 239 (258)
T PRK07533 219 -LRRLVDIDDVGAVAAFLASDA 239 (258)
T ss_pred -cCCCCCHHHHHHHHHHHhChh
Confidence 123567899999999998754
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=135.29 Aligned_cols=213 Identities=13% Similarity=0.025 Sum_probs=137.7
Q ss_pred CCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~------------~~ 178 (442)
+++++++||||++ .||+.++++|+++|++|++.+|+... .+....... .....++.+|+.+. .+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3457899999997 99999999999999999998875321 111111101 11224677888764 12
Q ss_pred CCCCEEEEecccCCCC--------cccCChhHHHHHhHHHHHHHHHHHHH---cCCeEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV--------HYKFNPVKTIKTNVVGTLNMLGLAKR---VGARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~---~g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
..+|++|||||..... ...+++...+++|+.++.++++++.. .+.++|++||.....
T Consensus 84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~------------ 151 (271)
T PRK06505 84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR------------ 151 (271)
T ss_pred CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc------------
Confidence 4699999999964321 11234677889999999888876642 234899999875321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|++.+.+++.++.+. |+++..|.||.+-.+..... .. ............+ .
T Consensus 152 ----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~-~~-~~~~~~~~~~~~p---------~ 216 (271)
T PRK06505 152 ----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGI-GD-ARAIFSYQQRNSP---------L 216 (271)
T ss_pred ----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccC-cc-hHHHHHHHhhcCC---------c
Confidence 11223579999999999999988764 89999999999876532100 00 0111111111111 1
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+|+++++++.... .| .+.+.++
T Consensus 217 ~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 217 RRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred cccCCHHHHHHHHHHHhCccccccCceEEeecCC
Confidence 234568999999999987543 35 4555444
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=135.28 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=130.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEecccccc------------ccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEP------------LLLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~------------~~~~~d 182 (442)
|+++||||+|+||.+++++|+++|++|++++|+.+...+..... .....+.++.+|+.+. .+.++|
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 47999999999999999999999999999988543211111110 1112234566777553 123589
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|||++|....... .+++...+++|+.++.++++++. +.+ .++|++||...+. +
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~----------------~ 144 (272)
T PRK07832 81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV----------------A 144 (272)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------------C
Confidence 99999986432221 22356789999999999999863 222 4899999975431 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHh---hcCCcEEEEeeCceeCCCCccCC--C-chHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHR---GAGVEVRIARIFNTYGPRMCIDD--G-RVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~---~~g~~~~iiRp~~v~G~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.+.. ..++++++++||.+.++...... + ............. ....
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 214 (272)
T PRK07832 145 LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR----------FRGH 214 (272)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh----------cccC
Confidence 11235699999988888777654 35899999999999887532100 0 0000000000000 0123
Q ss_pred ccCHHHHHHHHHHHHcC
Q 013467 327 FQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~ 343 (442)
.+..+|+|++++.++.+
T Consensus 215 ~~~~~~vA~~~~~~~~~ 231 (272)
T PRK07832 215 AVTPEKAAEKILAGVEK 231 (272)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 57889999999999964
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=149.80 Aligned_cols=213 Identities=16% Similarity=0.175 Sum_probs=143.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
..+++++||||+|+||.+++++|+++|++|++++|+.... +.+.... ...+..+.+|+.+.. +..+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA-KKLAEAL-GDEHLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh-CCceeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999999999999999999999999999999853221 1122211 234556778886641 2358
Q ss_pred CEEEEecccCCCC-c----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 182 d~Vih~A~~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
|+||||||..... . ..+.++.++++|+.++.++++++... +.+||++||...+. +.
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 408 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------AL 408 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------CC
Confidence 9999999964221 1 11246778999999999999887653 23899999977542 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.....|+.+|+..+.+++.++.+. |+++.+|+||.+..+........ -......+.+..++ ..+...
T Consensus 409 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~ 478 (520)
T PRK06484 409 PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKAS-GRADFDSIRRRIPL---------GRLGDP 478 (520)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccc-cHHHHHHHHhcCCC---------CCCcCH
Confidence 234679999999999999987754 89999999999987642100000 00111112221111 135678
Q ss_pred HHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 331 SDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+|+|+++++++..+. .| .+.+.++
T Consensus 479 ~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 479 EEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred HHHHHHHHHHhCccccCccCcEEEECCC
Confidence 999999999987542 35 5555544
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=127.95 Aligned_cols=180 Identities=17% Similarity=0.214 Sum_probs=127.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~Vih~A 188 (442)
|+++||||+|+||.+++++|.++ ++|++++|+.. .+.+|+.+. .+.++|+|||+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~a 63 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSAA 63 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEECC
Confidence 48999999999999999999999 99999988531 133444332 123699999999
Q ss_pred ccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHH
Q 013467 189 CPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 189 ~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
|....... .+++...+++|+.++.++++++... +.+|+++||.... .+......|+.
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~----------------~~~~~~~~Y~~ 127 (199)
T PRK07578 64 GKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD----------------EPIPGGASAAT 127 (199)
T ss_pred CCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC----------------CCCCCchHHHH
Confidence 96433221 2235667899999999999987642 2379999986532 12223467999
Q ss_pred HHHHHHHHHHHHHhh--cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRG--AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 262 sK~~~E~~v~~~~~~--~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
+|...+.+++.++.+ .|+++..|+||.+-.+. ..+ +..+ .. ..++..+|+|+++..
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~---------~~~------~~~~---~~----~~~~~~~~~a~~~~~ 185 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESL---------EKY------GPFF---PG----FEPVPAARVALAYVR 185 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCch---------hhh------hhcC---CC----CCCCCHHHHHHHHHH
Confidence 999999999988775 48999999999875431 100 0001 01 236789999999999
Q ss_pred HHcCCCCc-cEEe
Q 013467 340 LMEGEHVG-PFNL 351 (442)
Q Consensus 340 ~l~~~~~g-~~~i 351 (442)
+++....| +|++
T Consensus 186 ~~~~~~~g~~~~~ 198 (199)
T PRK07578 186 SVEGAQTGEVYKV 198 (199)
T ss_pred HhccceeeEEecc
Confidence 99876555 5543
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=139.21 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=114.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c-----------C
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L-----------L 179 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-----------~ 179 (442)
||+|+||||+|+||++++++|+++|++|++++|+.... ... ....++.++.+|+.+.. + .
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~---~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS---LAA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh---hhh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 56899999999999999999999999999999864321 111 11235777888876541 1 1
Q ss_pred CCCEEEEecccCCCCc-c----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~-~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.+|++|||||...+.. . .+.+...+++|+.++..+++.+. +.+. ++|++||...+.
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 142 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN-------------- 142 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC--------------
Confidence 4789999998654311 1 12356778899999776665543 3444 899999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh--cCCcEEEEeeCceeCC
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG--AGVEVRIARIFNTYGP 292 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~--~g~~~~iiRp~~v~G~ 292 (442)
+......|+.+|...|.+++.++.+ .++++.+|+||.+-.+
T Consensus 143 --~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 3334478999999999999988754 4899999999987554
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=137.98 Aligned_cols=215 Identities=18% Similarity=0.138 Sum_probs=138.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|+.... +.+... ...++.++.+|+.+.. +.++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGL-QELEAA-HGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHhh-cCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 3467999999999999999999999999999998854321 111111 1235677888886531 2358
Q ss_pred CEEEEecccCCCC----ccc-----CChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPV----HYK-----FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 182 d~Vih~A~~~~~~----~~~-----~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
|++|||||..... ... +.++..+++|+.++..+++++... +.++|++||...+.
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------------- 147 (262)
T TIGR03325 81 DCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------------- 147 (262)
T ss_pred CEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec-------------
Confidence 9999999864211 111 135678999999999999888542 23788888865431
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCC----CchHHHH-HHHHHcCCCcEEecCC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDD----GRVVSNF-VAQALRKEPLTVYGDG 321 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~ 321 (442)
+......|+.+|.+.+.+++.++.+. .+++..|.||.+..+...... ......+ ....... ..
T Consensus 148 ---~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------ 217 (262)
T TIGR03325 148 ---PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS-VL------ 217 (262)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh-cC------
Confidence 11223579999999999999998875 388999999998766321100 0000000 0111111 01
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC----Cc-cEEecCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH----VG-PFNLGNP 354 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~----~g-~~~i~~~ 354 (442)
....+...+|+|+++++++..+. .| ++.+.++
T Consensus 218 -p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg 254 (262)
T TIGR03325 218 -PIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGG 254 (262)
T ss_pred -CCCCCCChHHhhhheeeeecCCCcccccceEEEecCC
Confidence 12245668999999999886532 34 5555444
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9e-15 Score=137.29 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=130.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccc--------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVE--------------P 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~--------------~ 176 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.....+ ....+ ...++.++..|+.+ +
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEA-VYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHH-HHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999986432111 11111 22345566666642 1
Q ss_pred ccCCCCEEEEecccCCCC-----cccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.+..+|+|||+|+..... ...+.+...+++|+.++.++++++. +.+. +||++||.....
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~----------- 157 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ----------- 157 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC-----------
Confidence 223689999999864331 1123356788999999888887763 4454 899999975431
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|++.+.+++.+.++. ++++.+++|+.+-++.. .. ..... +
T Consensus 158 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~--------~~----~~~~~------~--- 211 (247)
T PRK08945 158 -----GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMR--------AS----AFPGE------D--- 211 (247)
T ss_pred -----CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcch--------hh----hcCcc------c---
Confidence 11123579999999999998876654 78899999988765421 00 00000 0
Q ss_pred eEeccCHHHHHHHHHHHHcCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...+...+|++.++++++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 212 PQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred ccCCCCHHHHHHHHHHHhCcc
Confidence 113567899999999988654
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=133.99 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=129.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----cC---------CC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----LL---------EV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~---------~~ 181 (442)
||+|+||||+|+||++++++|+++|++|++++|........+... ...++.++.+|+.+.. ++ +.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDNV 79 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCcccC
Confidence 468999999999999999999999999999998642221111111 1246778888886641 11 11
Q ss_pred --CEEEEecccCCCCc-c----cCChhHHHHHhHHHHHHHHHHH----HHc-C-CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 182 --DQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLA----KRV-G-ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 182 --d~Vih~A~~~~~~~-~----~~~~~~~~~~nv~gt~~ll~~a----~~~-g-~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+++||+||...+.. + .+.+...+++|+.++..+++.+ ++. + .+||++||...+
T Consensus 80 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~-------------- 145 (251)
T PRK06924 80 SSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK-------------- 145 (251)
T ss_pred CceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc--------------
Confidence 27899998654321 1 1235567888998866666544 333 2 389999997653
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCcc---CCCchHHHHHHHHHcCCCcEEecC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCI---DDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
.+......|+.+|.+.+.+++.++.+ .++++.+|+||.+-.+.... ....... ......... +
T Consensus 146 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~~~-----~- 216 (251)
T PRK06924 146 --NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFT-NLDRFITLK-----E- 216 (251)
T ss_pred --CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccch-HHHHHHHHh-----h-
Confidence 23334578999999999999988755 37999999999876543110 0000000 011111100 0
Q ss_pred CceeEeccCHHHHHHHHHHHHcC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
...+..++|+|+.++.++.+
T Consensus 217 ---~~~~~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 217 ---EGKLLSPEYVAKALRNLLET 236 (251)
T ss_pred ---cCCcCCHHHHHHHHHHHHhc
Confidence 11357889999999999986
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=129.41 Aligned_cols=273 Identities=16% Similarity=0.079 Sum_probs=176.1
Q ss_pred EEEEEcCCchhHHHHHH-----HHHhCC----CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 118 RIVVTGGAGFVGSHLVD-----RLIARG----DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~-----~Ll~~g----~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
..++-+++|+|+..|.. ++-+-+ |.|+++.|.+... .-..+.+..+++- ..||.++|++
T Consensus 14 ~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-ritw~el~~~Gip-----------~sc~a~vna~ 81 (315)
T KOG3019|consen 14 DAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-RITWPELDFPGIP-----------ISCVAGVNAV 81 (315)
T ss_pred cCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-ccccchhcCCCCc-----------eehHHHHhhh
Confidence 57778899999988877 555545 8999999864322 1122221111111 1245555544
Q ss_pred ccCC--C-CcccCCh-hHHHHHhHHHHHHHHHHHHHcC--C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHH
Q 013467 189 CPAS--P-VHYKFNP-VKTIKTNVVGTLNMLGLAKRVG--A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 189 ~~~~--~-~~~~~~~-~~~~~~nv~gt~~ll~~a~~~g--~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
|... + ..|.... .+.+...+..|..|+++.+++. . .+|.+|..++|-....+.++|+ .+.+.++...+
T Consensus 82 g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~-----~~~qgfd~~sr 156 (315)
T KOG3019|consen 82 GNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK-----IVHQGFDILSR 156 (315)
T ss_pred hhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc-----cccCChHHHHH
Confidence 4221 1 2344332 2345555666889999998876 3 5999999999987777778887 34444333333
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l 341 (442)
--..=|...+.. ....++++||+|.|.|.+ +..+..++.-+.-+-.-+ .|+|.+++.|||++|++..|..++
T Consensus 157 L~l~WE~aA~~~--~~~~r~~~iR~GvVlG~g-----GGa~~~M~lpF~~g~GGP-lGsG~Q~fpWIHv~DL~~li~~al 228 (315)
T KOG3019|consen 157 LCLEWEGAALKA--NKDVRVALIRIGVVLGKG-----GGALAMMILPFQMGAGGP-LGSGQQWFPWIHVDDLVNLIYEAL 228 (315)
T ss_pred HHHHHHHHhhcc--CcceeEEEEEEeEEEecC-----CcchhhhhhhhhhccCCc-CCCCCeeeeeeehHHHHHHHHHHH
Confidence 222223333232 225899999999999975 444444444333332222 378999999999999999999999
Q ss_pred cCCC-CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC---CCC--C-----CccccChHHHHHhhCCCccc-CHH
Q 013467 342 EGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT---EDD--P-----HKRKPDISRAKELLGWEPKV-SLR 409 (442)
Q Consensus 342 ~~~~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~---~~~--~-----~~~~~d~~k~~~~LG~~p~~-~l~ 409 (442)
+++. .|+.|-+.+++.+..||++.+..+++++.-+...+.- ... . .....-+.++.+ +||+.++ .+.
T Consensus 229 e~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqral~-~Gf~f~yp~vk 307 (315)
T KOG3019|consen 229 ENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRALE-LGFEFKYPYVK 307 (315)
T ss_pred hcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhHhh-cCceeechHHH
Confidence 9965 5899999999999999999999999988655432110 000 0 112334566665 9999988 566
Q ss_pred HHHHHHH
Q 013467 410 KGLPKMV 416 (442)
Q Consensus 410 e~l~~~~ 416 (442)
++++++.
T Consensus 308 ~Al~~i~ 314 (315)
T KOG3019|consen 308 DALRAIM 314 (315)
T ss_pred HHHHHHh
Confidence 7776653
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=150.41 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=120.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++++||||+|+||++++++|+++|++|++++|+.....+ +...+ ...++.++.+|+.+.. ..
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAER-TAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456799999999999999999999999999999986432221 11111 1236788889987752 22
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcC--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.+|+||||||....... .+++...+++|+.|+.++++++ .+.+ .+||++||...|..
T Consensus 392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------- 458 (582)
T PRK05855 392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP------------- 458 (582)
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC-------------
Confidence 58999999997543322 2346678889999999988865 3333 38999999887632
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCC
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~ 292 (442)
......|+.+|++.+.+++.++.+ .|+++++|+||.|-.+
T Consensus 459 ---~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ---SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 223468999999999998887654 4899999999988664
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-14 Score=134.70 Aligned_cols=212 Identities=14% Similarity=0.042 Sum_probs=137.2
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCC--CccccccccCCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTG--RKENVMHHFGNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~--~~~~~~~~~~~~~v~~~~~D~~~~~------------ 177 (442)
+++|+++||||+ +.||..++++|+++|++|++.+|+... ..+.....+.. . .++.+|+.+..
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 346799999997 799999999999999999999886311 11111111111 2 46788887651
Q ss_pred cCCCCEEEEecccCCC----Cc----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASP----VH----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~----~~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|++|||||.... .. ..+.++..+++|+.++..+.+++... +.++|++||....
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~------------ 148 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGV------------ 148 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCc------------
Confidence 2458999999996432 11 11236778999999998888776432 2489999986532
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.+......|+.+|++.+.+++.++.+ .|+++.+|.||.+..+.... ...+ ... ..... ... .
T Consensus 149 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~~-~~~-~~~~~-~~~-------p 213 (274)
T PRK08415 149 ----KYVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASG-IGDF-RMI-LKWNE-INA-------P 213 (274)
T ss_pred ----cCCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhc-cchh-hHH-hhhhh-hhC-------c
Confidence 11122357999999999999998875 48999999999987642100 0000 000 00000 001 1
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|++.++++++.... .| .+.+.+|
T Consensus 214 l~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG 248 (274)
T PRK08415 214 LKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAG 248 (274)
T ss_pred hhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCc
Confidence 1235678999999999987542 35 4555444
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-14 Score=133.63 Aligned_cols=223 Identities=17% Similarity=0.106 Sum_probs=137.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc-----------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL-----------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~-----------~~~~d~ 183 (442)
++++|||| |+||++++++|. +|++|++++|+.....+ ....+. ..++.++.+|+.+.. +.++|+
T Consensus 3 k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEA-AAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 57899998 799999999996 89999999986432211 111111 235677888886641 235999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCC-----CCCCCCCCCCCC--C--
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPL-----QHPQKETYWGNV--N-- 251 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~-----~~~~~E~~~~~~--~-- 251 (442)
||||||... ...++...+++|+.++.++++++... +.++|++||........ .......++.+. .
T Consensus 80 li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (275)
T PRK06940 80 LVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPF 156 (275)
T ss_pred EEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccccc
Confidence 999999642 23457889999999999999887543 23567777755332110 000011100000 0
Q ss_pred --C---CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 252 --P---IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 252 --~---~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+ ......|+.+|++.+.+++.++.+ .|+++.+|.||.+..+.....................+
T Consensus 157 ~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p--------- 227 (275)
T PRK06940 157 LQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSP--------- 227 (275)
T ss_pred ccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCC---------
Confidence 0 013467999999999999887665 38999999999988764210000000011111111111
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|+|+++++++.... .| .+.+.++
T Consensus 228 ~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg 262 (275)
T PRK06940 228 AGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGG 262 (275)
T ss_pred cccCCCHHHHHHHHHHHcCcccCcccCceEEEcCC
Confidence 1246678999999999886543 35 5555544
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-14 Score=132.18 Aligned_cols=213 Identities=11% Similarity=0.020 Sum_probs=137.7
Q ss_pred CCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCC--CccccccccCCCceeEEecccccc------------cc
Q 013467 115 KGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTG--RKENVMHHFGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 115 ~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~--~~~~~~~~~~~~~v~~~~~D~~~~------------~~ 178 (442)
.+++++||||+ +.||..++++|+++|++|++.+|.... ..+.+.......++.++.+|+.+. .+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 45789999997 899999999999999999998875321 111122222224567788898765 12
Q ss_pred CCCCEEEEecccCCC----Cc-cc---CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP----VH-YK---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~----~~-~~---~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|++|||||.... .. .+ +.+...+++|+.++..+++++... +.++|++||....
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~------------- 152 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE------------- 152 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc-------------
Confidence 458999999986431 11 11 124567889999988877776532 2389999997542
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|++.+.+++.++.+. |+++..|.||.+..+..... .. ............ ..
T Consensus 153 ---~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~~---------p~ 218 (257)
T PRK08594 153 ---RVVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV-GG-FNSILKEIEERA---------PL 218 (257)
T ss_pred ---cCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh-cc-ccHHHHHHhhcC---------Cc
Confidence 112223579999999999999887654 89999999998876521000 00 001111111111 11
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+++++++++.... .| .+.+.++
T Consensus 219 ~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg 252 (257)
T PRK08594 219 RRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSG 252 (257)
T ss_pred cccCCHHHHHHHHHHHcCcccccccceEEEECCc
Confidence 245678999999999987543 35 4444433
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=131.18 Aligned_cols=215 Identities=15% Similarity=0.088 Sum_probs=139.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEecccccc--------ccCCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEP--------LLLEVD 182 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~--------~~~~~d 182 (442)
.++++|+||||+|+||..+++.|+++|++|++++|+..... .....+ ...++.++.+|+.+. ....+|
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALE-ALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 34679999999999999999999999999999998643221 111111 123567788888664 234699
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
++|||+|....... .+++...+++|+.+...+++.+ ++.+. ++|++||.... .+.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~----------------~~~ 147 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE----------------NPD 147 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc----------------CCC
Confidence 99999986432221 1235677899999988888765 34433 89999886432 122
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC----CCc-h-HHHHHHHHHcCCCcEEecCCcee
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID----DGR-V-VSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.....|+.+|.+.+.+++.++.+ .|+++..|.||.+..+..... ... + -......+... . ..
T Consensus 148 ~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~ 218 (259)
T PRK06125 148 ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAG--L-------PL 218 (259)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhcc--C-------Cc
Confidence 23367999999999999988654 489999999998876531000 000 0 00000011110 0 11
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+..++|+++++++++.... .| .+.+.++
T Consensus 219 ~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg 252 (259)
T PRK06125 219 GRPATPEEVADLVAFLASPRSGYTSGTVVTVDGG 252 (259)
T ss_pred CCCcCHHHHHHHHHHHcCchhccccCceEEecCC
Confidence 246688999999999987542 35 5555544
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=134.10 Aligned_cols=197 Identities=14% Similarity=0.058 Sum_probs=132.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++|+||||+|+||+++++.|+++|++|++++|+...............++.++.+|+.+.. +.++|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 456999999999999999999999999999999864322111011111235778888887541 23579
Q ss_pred EEEEecccCCCCc--ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 183 ~Vih~A~~~~~~~--~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
.+||+++...... ..+.....++.|+.++..+++.+... +.+||++||..... .+.....
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------~~~~~~~ 148 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY---------------KASPDQL 148 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc---------------cCCCCch
Confidence 9999998532211 11234556789999988887776542 34899999865321 1112235
Q ss_pred hhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHH
Q 013467 258 CYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 334 (442)
.|+.+|...+.+++.+..+. |++++++||++++++... . .. +.. ....+ ..++..+|++
T Consensus 149 ~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~---~----~~----~~~--~~~~~-----~~~~~~~~va 210 (238)
T PRK05786 149 SYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEP---E----RN----WKK--LRKLG-----DDMAPPEDFA 210 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCc---h----hh----hhh--hcccc-----CCCCCHHHHH
Confidence 79999999999888877654 899999999999987421 0 00 000 00000 1356779999
Q ss_pred HHHHHHHcCC
Q 013467 335 EGLMRLMEGE 344 (442)
Q Consensus 335 ~ai~~~l~~~ 344 (442)
++++.++..+
T Consensus 211 ~~~~~~~~~~ 220 (238)
T PRK05786 211 KVIIWLLTDE 220 (238)
T ss_pred HHHHHHhccc
Confidence 9999999754
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-14 Score=134.24 Aligned_cols=209 Identities=18% Similarity=0.118 Sum_probs=136.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC--------CCcccccccc--CCCceeEEecccccc-------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT--------GRKENVMHHF--GNPNFELIRHDVVEP------- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~--------~~~~~~~~~~--~~~~v~~~~~D~~~~------- 176 (442)
.++++++||||+++||..++++|+++|++|++++|+.. ...+.....+ ...++.++.+|+.+.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 34579999999999999999999999999999887531 1111111111 123566788888763
Q ss_pred -----ccCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----Hc---C----CeEEEeecCccccC
Q 013467 177 -----LLLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RV---G----ARFLLTSTSEVYGD 236 (442)
Q Consensus 177 -----~~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~---g----~r~i~iSS~~vy~~ 236 (442)
.+.++|++|||||....... .+++...+++|+.++..+++++. +. + .+||++||...+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~- 162 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ- 162 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc-
Confidence 12468999999997543211 23467789999999988887663 21 1 3799999976431
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCC
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKE 313 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 313 (442)
+......|+.+|.+.+.+++.++.+ .|+++..|.|| +..+. ............
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~--------~~~~~~~~~~~~ 218 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM--------TETVFAEMMAKP 218 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc--------chhhHHHHHhcC
Confidence 1122367999999999999988775 48999999998 42221 111111111111
Q ss_pred CcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 314 PLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 314 ~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+ . ....+...+|++.++++++.... .| .+.+.++
T Consensus 219 ~-----~--~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 256 (286)
T PRK07791 219 E-----E--GEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGG 256 (286)
T ss_pred c-----c--cccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCC
Confidence 0 1 11135578999999999886542 45 4444444
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-14 Score=132.01 Aligned_cols=213 Identities=11% Similarity=-0.014 Sum_probs=135.6
Q ss_pred CCCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~ 178 (442)
.++++++|||| ++.||+.++++|+++|++|++.+|... ..+.+.... .......+.+|+.+. .+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK-LEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-HHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence 34568999997 679999999999999999998876421 111111111 112334678888764 12
Q ss_pred CCCCEEEEecccCCCC----c-cc----CChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccccCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV----H-YK----FNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~----~-~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.++|++|||||..... . .+ +.+...+++|+.++..+.+.+. +.+.++|++||...+.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~---------- 152 (261)
T PRK08690 83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR---------- 152 (261)
T ss_pred CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc----------
Confidence 3699999999975321 1 11 1245667899998877776543 2223799999876431
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .|+++..|.||.+-.+..... .. .......+....+
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~~p-------- 216 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGI-AD-FGKLLGHVAAHNP-------- 216 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcC-Cc-hHHHHHHHhhcCC--------
Confidence 1222367999999999998887654 489999999999876531100 00 0111111211111
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|+|+++.+++..+. .| .+.+.+|
T Consensus 217 -~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG 251 (261)
T PRK08690 217 -LRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGG 251 (261)
T ss_pred -CCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCC
Confidence 1246678999999999998643 34 5555444
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=137.64 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=129.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEecccccc----------ccC--
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEP----------LLL-- 179 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~----------~~~-- 179 (442)
+++++||||+|+||++++++|+++|++|++++|+.+... .....+ ...++..+..|+.+. .+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLK-DVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 568999999999999999999999999999999643222 111111 123456666676531 112
Q ss_pred CCCEEEEecccCCCC--cc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV--HY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~--~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|++|||||..... .. .++....+++|+.++..+.+++. +.+. ++|++||...+..+
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~----------- 200 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP----------- 200 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-----------
Confidence 366999999975321 11 12355689999999988888763 4454 89999997654210
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|++.+.+.+.++.+. |+++.++.||.+-.+... ..... .
T Consensus 201 ---~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~--------------~~~~~----------~ 253 (320)
T PLN02780 201 ---SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS--------------IRRSS----------F 253 (320)
T ss_pred ---CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc--------------ccCCC----------C
Confidence 01123689999999999999987664 899999999998765310 00000 0
Q ss_pred eccCHHHHHHHHHHHHcC
Q 013467 326 SFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~ 343 (442)
-....+++|+.++..+..
T Consensus 254 ~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 254 LVPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 134679999999999864
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=130.42 Aligned_cols=212 Identities=15% Similarity=0.054 Sum_probs=136.0
Q ss_pred CCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------ccC
Q 013467 115 KGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 115 ~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~~ 179 (442)
++++++||||++ .||+.++++|+++|++|++.+|+.. ..+...... ....+.++.+|+.+. .+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchh-HHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 457899999985 9999999999999999998887521 111111111 113455778888664 123
Q ss_pred CCCEEEEecccCCCCc---------ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH---------YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~---------~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.+|++|||||...... ..+.++..+++|+.++..+.+++... +.++|++||.+..
T Consensus 84 ~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~------------- 150 (262)
T PRK07984 84 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------- 150 (262)
T ss_pred CCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC-------------
Confidence 5899999999643211 11235567889999988887776432 2379999987532
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|.||.+..+... .... ............+ .
T Consensus 151 ---~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~-~~~~-~~~~~~~~~~~~p---------~ 216 (262)
T PRK07984 151 ---RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS-GIKD-FRKMLAHCEAVTP---------I 216 (262)
T ss_pred ---CCCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHh-cCCc-hHHHHHHHHHcCC---------C
Confidence 12222357999999999999998875 4899999999988654210 0000 1111111111111 1
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|++.++++++.... .| .+.+.++
T Consensus 217 ~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg 250 (262)
T PRK07984 217 RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 250 (262)
T ss_pred cCCCCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 245678999999999987643 35 4444444
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=127.45 Aligned_cols=199 Identities=15% Similarity=0.096 Sum_probs=132.1
Q ss_pred CCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCC-------cc---cccccc--CCCceeEEecccccc---
Q 013467 114 RKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGR-------KE---NVMHHF--GNPNFELIRHDVVEP--- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~-------~~---~~~~~~--~~~~v~~~~~D~~~~--- 176 (442)
.++++|+||||+| +||.+++++|+++|++|++.+|....+ .+ .....+ ...++.++.+|+.+.
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 4567999999995 899999999999999999886532111 01 111111 123567788888664
Q ss_pred ---------ccCCCCEEEEecccCCCCcc-c---CChhHHHHHhHHHHHHHHHH----HHHcC-CeEEEeecCccccCCC
Q 013467 177 ---------LLLEVDQIYHLACPASPVHY-K---FNPVKTIKTNVVGTLNMLGL----AKRVG-ARFLLTSTSEVYGDPL 238 (442)
Q Consensus 177 ---------~~~~~d~Vih~A~~~~~~~~-~---~~~~~~~~~nv~gt~~ll~~----a~~~g-~r~i~iSS~~vy~~~~ 238 (442)
.+..+|+|||+||....... . +.+...+++|+.++..+.+. +++.+ .+||++||....
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---- 159 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ---- 159 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC----
Confidence 12348999999986433211 1 23556789999998877543 34333 389999997643
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCc
Q 013467 239 QHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL 315 (442)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 315 (442)
.+......|+.+|.+.+.+++.++.+ .|++++.|+||.+-.+... ..+...+....+
T Consensus 160 ------------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~-------~~~~~~~~~~~~- 219 (256)
T PRK12859 160 ------------GPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT-------EEIKQGLLPMFP- 219 (256)
T ss_pred ------------CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC-------HHHHHHHHhcCC-
Confidence 12233478999999999999988765 4899999999998765321 111111111111
Q ss_pred EEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 316 ~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...+...+|+++++..++...
T Consensus 220 --------~~~~~~~~d~a~~~~~l~s~~ 240 (256)
T PRK12859 220 --------FGRIGEPKDAARLIKFLASEE 240 (256)
T ss_pred --------CCCCcCHHHHHHHHHHHhCcc
Confidence 123456799999999988654
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.6e-14 Score=135.46 Aligned_cols=218 Identities=13% Similarity=0.099 Sum_probs=135.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+++++||||+++||.+++++|+++| ++|++++|+..... .....+ ....+.++.+|+.+.. ..+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAE-QAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4589999999999999999999999 99999998643221 111111 1235677888886541 235
Q ss_pred CCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHH----HHcC---CeEEEeecCccccCCC----CCCCCC
Q 013467 181 VDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLA----KRVG---ARFLLTSTSEVYGDPL----QHPQKE 244 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a----~~~g---~r~i~iSS~~vy~~~~----~~~~~E 244 (442)
+|++|||||...+.. ..+.++..+++|+.++..+++++ ++.+ .++|++||...+.... ..+.+.
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 999999999643211 12345678899999987776554 3442 4999999987653210 001110
Q ss_pred CC-------C------CCCCCCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHH
Q 013467 245 TY-------W------GNVNPIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVA 307 (442)
Q Consensus 245 ~~-------~------~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~ 307 (442)
.+ + ....+..+...|+.||++...+++.++++ .|++++.++||.|.......+.......+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~~ 241 (314)
T TIGR01289 162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLFP 241 (314)
T ss_pred cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHHHH
Confidence 10 0 00123344567999999988888888764 3799999999998643221111111111111
Q ss_pred HHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 308 QALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
..... . ...+...++.++.++.++..+
T Consensus 242 ~~~~~---~-------~~~~~~~~~~a~~l~~~~~~~ 268 (314)
T TIGR01289 242 PFQKY---I-------TKGYVSEEEAGERLAQVVSDP 268 (314)
T ss_pred HHHHH---H-------hccccchhhhhhhhHHhhcCc
Confidence 11100 0 012456888999998888754
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-14 Score=131.24 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=137.8
Q ss_pred CCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCC-Ccccccccc--CCCceeEEecccccc------------c
Q 013467 115 KGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTG-RKENVMHHF--GNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 115 ~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~-~~~~~~~~~--~~~~v~~~~~D~~~~------------~ 177 (442)
++++++||||+ +.||..++++|+++|++|++.+|+... +.+.....+ ....+.++.+|+.+. .
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence 45789999986 799999999999999999888764321 221111111 112355778888664 1
Q ss_pred cCCCCEEEEecccCCC----Ccc----cCChhHHHHHhHHHHHHHHHHHHH---cCCeEEEeecCccccCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASP----VHY----KFNPVKTIKTNVVGTLNMLGLAKR---VGARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~----~~~----~~~~~~~~~~nv~gt~~ll~~a~~---~g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|++|||||.... ... .+.++..+++|+.++..+++++.. .+.++|++||....
T Consensus 85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~------------ 152 (258)
T PRK07370 85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV------------ 152 (258)
T ss_pred cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc------------
Confidence 2369999999996431 111 123677889999998888877642 23489999996532
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.+......|+.+|++.+.+++.++.+. |+++.+|.||.+-.+..... ... ........... .
T Consensus 153 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~-~~~-~~~~~~~~~~~---------p 217 (258)
T PRK07370 153 ----RAIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV-GGI-LDMIHHVEEKA---------P 217 (258)
T ss_pred ----cCCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc-ccc-hhhhhhhhhcC---------C
Confidence 122223679999999999999988754 79999999999876531000 000 11111111111 1
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|++.++.+++..+. .| .+.+.++
T Consensus 218 ~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 218 LRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred cCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 2246678999999999987543 34 4555443
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=130.84 Aligned_cols=212 Identities=12% Similarity=0.005 Sum_probs=136.1
Q ss_pred CCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC-CceeEEecccccc------------ccC
Q 013467 115 KGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 115 ~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~------------~~~ 179 (442)
++++++||||++ .||..+++.|+++|++|++.+|+. ...+........ ....++.+|+.+. .+.
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456899999997 899999999999999999988752 111111111111 1223567888664 224
Q ss_pred CCCEEEEecccCCCC----c----ccCChhHHHHHhHHHHHHHHHHHHH---cCCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV----H----YKFNPVKTIKTNVVGTLNMLGLAKR---VGARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~----~----~~~~~~~~~~~nv~gt~~ll~~a~~---~g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|++|||||..... . ..+++...+++|+.++..+++.+.. .+.++|++||....
T Consensus 86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~-------------- 151 (260)
T PRK06603 86 SFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE-------------- 151 (260)
T ss_pred CccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc--------------
Confidence 599999999864311 1 1124667899999999888886532 12489999996542
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|++.+.+++.++.+ .|+++.+|.||.+-.+..... .. ............+ ..
T Consensus 152 --~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~~p---------~~ 218 (260)
T PRK06603 152 --KVIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAI-GD-FSTMLKSHAATAP---------LK 218 (260)
T ss_pred --cCCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcC-CC-cHHHHHHHHhcCC---------cC
Confidence 11112367999999999999998775 489999999999866521000 00 0111111211111 12
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+|+++++++..+. .| .+.+.++
T Consensus 219 r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 219 RNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred CCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 35678999999999997543 35 4555444
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=128.73 Aligned_cols=211 Identities=12% Similarity=0.086 Sum_probs=135.7
Q ss_pred CCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCC-CCccccccccCCCceeEEeccccccc------------cC
Q 013467 115 KGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFT-GRKENVMHHFGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 115 ~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 179 (442)
++++++|||| ++.||..++++|+++|++|++.+|+.. ...+.....+. ..+.++.+|+.+.. +.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4568999999 899999999999999999999987531 11122222222 24667888887641 24
Q ss_pred CCCEEEEecccCCCC----cc----cCChhHHHHHhHHHHHHHHHHHHH---cCCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV----HY----KFNPVKTIKTNVVGTLNMLGLAKR---VGARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~----~~----~~~~~~~~~~nv~gt~~ll~~a~~---~g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|++|||||..... .. .+++.+.+++|+.++..+++.+.. .+.++|++|+....
T Consensus 85 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~-------------- 150 (256)
T PRK07889 85 GLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV-------------- 150 (256)
T ss_pred CCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc--------------
Confidence 699999999975321 11 123556789999998888777643 12378888754321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|+..+.+++.++.+ .|+++.+|.||.+-.+....... .......+....++ .+
T Consensus 151 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------~~ 217 (256)
T PRK07889 151 ---AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG--FELLEEGWDERAPL--------GW 217 (256)
T ss_pred ---cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC--cHHHHHHHHhcCcc--------cc
Confidence 1112356999999999999988775 48999999999987653210000 01111111111111 01
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGN 353 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~ 353 (442)
.+...+|+|+++++++.+.. .| .+.+.+
T Consensus 218 ~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdg 249 (256)
T PRK07889 218 DVKDPTPVARAVVALLSDWFPATTGEIVHVDG 249 (256)
T ss_pred ccCCHHHHHHHHHHHhCcccccccceEEEEcC
Confidence 35678999999999987643 35 444443
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=130.63 Aligned_cols=212 Identities=12% Similarity=0.005 Sum_probs=137.3
Q ss_pred CCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------ccC
Q 013467 115 KGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 115 ~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~~ 179 (442)
++++++||||+ +.||..++++|+++|++|++.+|... ..+.+.... .......+.+|+.+. .+.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 87 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG 87 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45689999997 89999999999999999998877421 111111110 112245678888664 123
Q ss_pred CCCEEEEecccCCCC----c----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV----H----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~----~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.+|++|||||..... . ..+.+...+++|+.++..+++.+... +.++|++||....
T Consensus 88 ~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-------------- 153 (272)
T PRK08159 88 KLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE-------------- 153 (272)
T ss_pred CCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc--------------
Confidence 589999999965321 1 11246778999999999999877542 2489999986532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|++.+.+++.++.+. |+++.+|.||.+..+..... ..+ .. ....... ..+ ..
T Consensus 154 --~~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~-~~-~~~~~~~-~~p-------~~ 220 (272)
T PRK08159 154 --KVMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI-GDF-RY-ILKWNEY-NAP-------LR 220 (272)
T ss_pred --cCCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC-Ccc-hH-HHHHHHh-CCc-------cc
Confidence 111223679999999999999887754 89999999998865421000 000 00 0111110 111 12
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+|+++++++.... .| .+.+.++
T Consensus 221 r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG 253 (272)
T PRK08159 221 RTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSG 253 (272)
T ss_pred ccCCHHHHHHHHHHHhCccccCccceEEEECCC
Confidence 35678999999999997543 35 5555555
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=128.90 Aligned_cols=212 Identities=11% Similarity=-0.033 Sum_probs=135.5
Q ss_pred CCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEecccccc------------ccC
Q 013467 115 KGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 115 ~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~------------~~~ 179 (442)
++++++|||| ++.||..++++|+++|++|++.+|... ..+.+..... ......+.+|+.+. .+.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence 4568999996 679999999999999999998876421 1111111111 11223567787664 124
Q ss_pred CCCEEEEecccCCCC----c-----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV----H-----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~----~-----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
++|++|||||..... . ..++++..+++|+.++..+++++... +.++|++||....
T Consensus 84 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~------------- 150 (260)
T PRK06997 84 GLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE------------- 150 (260)
T ss_pred CCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc-------------
Confidence 699999999975321 1 11246678899999998888876542 2389999986542
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|++.+.+++.++.+ .|+++..|.||.+-.+..... .. .......+....+ .
T Consensus 151 ---~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~~p---------~ 216 (260)
T PRK06997 151 ---RVVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGI-KD-FGKILDFVESNAP---------L 216 (260)
T ss_pred ---cCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccc-cc-hhhHHHHHHhcCc---------c
Confidence 11122356999999999999998775 389999999998866421100 00 0111111111111 1
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+++++.+++..+. .| ++.+.++
T Consensus 217 ~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 217 RRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred cccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 235678999999999997643 24 5555443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-14 Score=149.81 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=137.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDE-LVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3557899999999999999999999999999999986432211 11111 1246788888987641 2
Q ss_pred CCCCEEEEecccCCCCcc------cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY------KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~------~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|+||||||....... .+++...+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 515 (657)
T PRK07201 447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN----------- 515 (657)
T ss_pred CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC-----------
Confidence 358999999996432211 1235678899999988876665 44554 8999999887632
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
......|+.+|.+.+.+++.++.+ .|+++++|+||.+..+..... .. +. .
T Consensus 516 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~---------------~~---~~----~ 568 (657)
T PRK07201 516 -----APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT---------------KR---YN----N 568 (657)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc---------------cc---cc----C
Confidence 122367999999999999888765 389999999999987642100 00 00 0
Q ss_pred EeccCHHHHHHHHHHHHcCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~ 344 (442)
..++..+++|+.++..+.+.
T Consensus 569 ~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 569 VPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 12567899999999987654
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.6e-14 Score=128.19 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=129.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------cC--CCCEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--------LL--EVDQIY 185 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~--~~d~Vi 185 (442)
|++++||||+|+||++++++|+++|++|++++|...... .+ ....++++.+|+.+.. +. ++|+||
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~-~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALA-AL----QALGAEALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHH-HH----HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999998643211 11 1124567788876541 22 489999
Q ss_pred EecccCCCCc------ccCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCc-cccCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVH------YKFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSE-VYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 186 h~A~~~~~~~------~~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|++|...... ..++++..+++|+.++.++++++.. .+.++|++||.. .++.. +..
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------~~~ 141 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA--------------TGT 141 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc--------------cCC
Confidence 9998753211 2234677899999999999988864 223789998854 44321 111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc-CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
+...|+.+|...+.+++.+..+. ++++..++||++..+... + ...+..++.
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~------------------------~----~~~~~~~~~ 193 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG------------------------A----QAALDPAQS 193 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC------------------------C----CCCCCHHHH
Confidence 12369999999999999887654 789999999988765310 0 113466888
Q ss_pred HHHHHHHHcCCC
Q 013467 334 VEGLMRLMEGEH 345 (442)
Q Consensus 334 a~ai~~~l~~~~ 345 (442)
+..+..++....
T Consensus 194 ~~~~~~~~~~~~ 205 (222)
T PRK06953 194 VAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHhcC
Confidence 888888776543
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=126.51 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=130.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c----CCCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L----LEVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~----~~~d~Vih~ 187 (442)
|+++||||+|+||++++++|+++|++|++++|+.+.. +.... ...+.++.+|+.+.. + .++|++|||
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~-~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDL-EVAAK---ELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH---hccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 4799999999999999999999999999998853211 11111 113567778876642 1 258999999
Q ss_pred cccCCC----C--c---ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPASP----V--H---YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 188 A~~~~~----~--~---~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||.... . . ..+++.+.+++|+.++.++++++... +.++|++||... + .
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~------------------~--~ 136 (223)
T PRK05884 77 PAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP------------------P--A 136 (223)
T ss_pred CCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC------------------C--C
Confidence 984211 0 0 12346788999999999999887542 248999998641 0 1
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|++.+.+++.++.+ .|+++..|.||.+..+.. .. ... . .....+|
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~--------~~-----~~~--~----------p~~~~~~ 191 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY--------DG-----LSR--T----------PPPVAAE 191 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh--------hh-----ccC--C----------CCCCHHH
Confidence 257999999999999988775 489999999998865321 00 000 0 0126799
Q ss_pred HHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 333 LVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 333 va~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+++++.+++..+. .| ++.+.+|
T Consensus 192 ia~~~~~l~s~~~~~v~G~~i~vdgg 217 (223)
T PRK05884 192 IARLALFLTTPAARHITGQTLHVSHG 217 (223)
T ss_pred HHHHHHHHcCchhhccCCcEEEeCCC
Confidence 9999999887543 34 5555544
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-14 Score=129.85 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=115.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc---cccccccCCCceeEEecccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK---ENVMHHFGNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~------------~ 177 (442)
...+|+|+||||+.+||.+++.+|.++|..++.+.|....-+ +.+...+...++.++++|+.+. .
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 345679999999999999999999999998877777532211 1122222222588899999775 3
Q ss_pred cCCCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHH----HHcC-CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a----~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|++|||||......... +....+++|+.|+..+.+++ ++.+ -++|.+||+.-+
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~-------------- 154 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK-------------- 154 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc--------------
Confidence 457999999999876332222 24458899999977776655 5666 499999998754
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEE----EEeeCceeC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR----IARIFNTYG 291 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~----iiRp~~v~G 291 (442)
.+......|+.||.+.+.+...+..+..-..+ +|-||+|-.
T Consensus 155 --~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~T 199 (282)
T KOG1205|consen 155 --MPLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIET 199 (282)
T ss_pred --cCCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceee
Confidence 23333358999999999999998877633222 366766543
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=128.45 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=119.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 188 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+. .... ...++.+|+.+. .+.++|++||||
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~---~~~~-~~~~~~~D~~~~~~~~~~~~~iDilVnnA 87 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSES---NDES-PNEWIKWECGKEESLDKQLASLDVLILNH 87 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhh---hccC-CCeEEEeeCCCHHHHHHhcCCCCEEEECC
Confidence 4567999999999999999999999999999999864211111 1111 124566776553 455799999999
Q ss_pred ccCCCCcc-cCChhHHHHHhHHHHHHHHHHHHHc--------CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 189 CPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 189 ~~~~~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~--------g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
|....... .+++...+++|+.++.++++++... +..++..||...+. +. ....|
T Consensus 88 G~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------~~-~~~~Y 150 (245)
T PRK12367 88 GINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------PA-LSPSY 150 (245)
T ss_pred ccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------CC-CCchh
Confidence 96433222 2346778999999999999876431 22344444433221 11 12569
Q ss_pred HHHHHHHHHHH---HHHH---hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 260 DEGKRTAETLT---MDYH---RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 260 ~~sK~~~E~~v---~~~~---~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
+.||.+.+.+. +++. ...++.+..+.||.+..+. .+ ...+..+|+
T Consensus 151 ~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~-------------------~~----------~~~~~~~~v 201 (245)
T PRK12367 151 EISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSEL-------------------NP----------IGIMSADFV 201 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCccccc-------------------Cc----------cCCCCHHHH
Confidence 99999975433 2222 1347778778776643210 00 014678999
Q ss_pred HHHHHHHHcCCCCcc
Q 013467 334 VEGLMRLMEGEHVGP 348 (442)
Q Consensus 334 a~ai~~~l~~~~~g~ 348 (442)
|+.++.++.+....+
T Consensus 202 A~~i~~~~~~~~~~~ 216 (245)
T PRK12367 202 AKQILDQANLGLYLI 216 (245)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998765543
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.9e-13 Score=122.39 Aligned_cols=187 Identities=15% Similarity=0.151 Sum_probs=126.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~Vih 186 (442)
|+|+||||+|+||++++++|+++| ..|+..+|.... + ....++.++++|+.+. .+.++|+|||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~--~-----~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP--D-----FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc--c-----cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999986 456555553221 1 1234677888888664 2346999999
Q ss_pred ecccCCCCc------c-c---CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 187 LACPASPVH------Y-K---FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 187 ~A~~~~~~~------~-~---~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|||...... . . +.+...+++|+.++..+++.+.. .+. +++++||.. +.... .
T Consensus 74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~~-----------~ 140 (235)
T PRK09009 74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSISD-----------N 140 (235)
T ss_pred CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccccc-----------C
Confidence 999754211 0 1 12456788999998877776543 333 888988732 11000 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|...+.+++.++.+ .++++..+.||.+..+... .+ ... . ....
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~--------~~----~~~--~-------~~~~ 199 (235)
T PRK09009 141 RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSK--------PF----QQN--V-------PKGK 199 (235)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCc--------ch----hhc--c-------ccCC
Confidence 1223357999999999999988765 3788999999998776421 00 000 0 1123
Q ss_pred ccCHHHHHHHHHHHHcCC
Q 013467 327 FQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~ 344 (442)
+...+|+|++++.++...
T Consensus 200 ~~~~~~~a~~~~~l~~~~ 217 (235)
T PRK09009 200 LFTPEYVAQCLLGIIANA 217 (235)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 567899999999999875
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-13 Score=135.76 Aligned_cols=210 Identities=15% Similarity=0.087 Sum_probs=136.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||..++++|.++|++|++++|... .+.+.......+..++.+|+.+.. ..++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~--~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 285 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA--GEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGL 285 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCC
Confidence 45689999999999999999999999999999987421 111111111123356677776541 2258
Q ss_pred CEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc-----CCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV-----GARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~-----g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+|||+||...... ..+.+...+++|+.++.++.+++... +.+||++||...+..
T Consensus 286 d~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g---------------- 349 (450)
T PRK08261 286 DIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAG---------------- 349 (450)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC----------------
Confidence 99999999754322 12346678899999999999988653 248999999764311
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|...+.+++.++.+ .|+++.++.||.+-.+... . +........+. +. .......
T Consensus 350 ~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~----~-~~~~~~~~~~~--~~------~l~~~~~ 416 (450)
T PRK08261 350 NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTA----A-IPFATREAGRR--MN------SLQQGGL 416 (450)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhh----c-cchhHHHHHhh--cC------CcCCCCC
Confidence 112367999999988888887654 4899999999987543210 0 01111111110 00 1112234
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+|+++++.+++.... +| .+.++++
T Consensus 417 p~dva~~~~~l~s~~~~~itG~~i~v~g~ 445 (450)
T PRK08261 417 PVDVAETIAWLASPASGGVTGNVVRVCGQ 445 (450)
T ss_pred HHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 6799999999886543 35 5556543
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-13 Score=122.31 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=140.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d 182 (442)
++.+||||||.++||+.++.+|+++|..+.+.|.+.....+..........+..+.+|+.+. ...++|
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ 116 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVD 116 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence 45589999999999999999999999999999988766665544333223678888888664 334699
Q ss_pred EEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHH----HHHHcC-CeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLG----LAKRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~----~a~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
++|||||........+ .-++.+++|+.+.....+ .+.+.. .++|.++|+.-+ ...
T Consensus 117 ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~----------------~g~ 180 (300)
T KOG1201|consen 117 ILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGL----------------FGP 180 (300)
T ss_pred EEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcc----------------cCC
Confidence 9999999876544332 255689999998665544 445544 499999997643 122
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc------CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA------GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~------g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.....|+.||.++..+.+.+..+. |++++.+.|+.+= .++ ..+ ..+ -......
T Consensus 181 ~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~-Tgm---------------f~~-~~~----~~~l~P~ 239 (300)
T KOG1201|consen 181 AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN-TGM---------------FDG-ATP----FPTLAPL 239 (300)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc-ccc---------------cCC-CCC----CccccCC
Confidence 233679999999988877765432 7889999987654 111 111 111 1134567
Q ss_pred cCHHHHHHHHHHHHcCCCCcc
Q 013467 328 QFVSDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~g~ 348 (442)
+..+.+|+-|+.++..+..+.
T Consensus 240 L~p~~va~~Iv~ai~~n~~~~ 260 (300)
T KOG1201|consen 240 LEPEYVAKRIVEAILTNQAGL 260 (300)
T ss_pred CCHHHHHHHHHHHHHcCCccc
Confidence 888999999999999877663
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=125.83 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=113.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------c--CCCCEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--------L--LEVDQIY 185 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~--~~~d~Vi 185 (442)
|++|+||||+|+||++++++|+++|++|++++|+..... .... ..++.+..+|+.+.. + .++|+||
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT-ALQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH-HHHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 468999999999999999999999999999999754322 1111 134566777776541 1 2589999
Q ss_pred EecccCCCCc------ccCChhHHHHHhHHHHHHHHHHHHHc---C-CeEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVH------YKFNPVKTIKTNVVGTLNMLGLAKRV---G-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 186 h~A~~~~~~~------~~~~~~~~~~~nv~gt~~ll~~a~~~---g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
|+||...... ...+....+.+|+.++..+++++... + ..++++||.. +.... .+...
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-----------~~~~~ 143 (225)
T PRK08177 77 VNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-----------PDGGE 143 (225)
T ss_pred EcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-----------CCCCC
Confidence 9998753321 11234567788999998888877532 3 3788888753 22111 11122
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCC
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~ 293 (442)
...|+.+|.+.+.+++.++++ .++++..++||.+-.+.
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 346999999999999988765 37899999999887653
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=130.28 Aligned_cols=178 Identities=19% Similarity=0.109 Sum_probs=126.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc---ccccCCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV---MHHFGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~D~~~~~------------~ 178 (442)
..+++++|||||.+||.+++++|+.+|.+|++.+|+.....+.. ........+.++++|+.+.. .
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~ 112 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKE 112 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcC
Confidence 34468999999999999999999999999999999763322222 22234567888999997742 2
Q ss_pred CCCCEEEEecccCCCCc--ccCChhHHHHHhHHHHHHH----HHHHHHcC-CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNM----LGLAKRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~--~~~~~~~~~~~nv~gt~~l----l~~a~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
...|++|||||+..+.. ..+..+..+.+|..|+..| +..++.+. .|+|++||..-.....-..++.. ...
T Consensus 113 ~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~---~~~ 189 (314)
T KOG1208|consen 113 GPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGE---KAK 189 (314)
T ss_pred CCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccch---hcc
Confidence 35899999999877654 2245788899999996555 55566666 59999999754110011111111 001
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRM 294 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~ 294 (442)
.......|+.||.+...++.+++++. |+.+..+.||.+..+..
T Consensus 190 ~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 190 LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 13233459999999999999998866 79999999999888743
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=116.02 Aligned_cols=209 Identities=16% Similarity=0.121 Sum_probs=143.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d~ 183 (442)
.+.++||||+..||+.++..|.+.|++|.+.+++....++.....-...+..-+.+|+.++ .+..+++
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv 93 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV 93 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence 4579999999999999999999999999999987654433332222223455667777554 2335899
Q ss_pred EEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc------CC-eEEEeecCc-cccCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV------GA-RFLLTSTSE-VYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 184 Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~------g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~~~ 251 (442)
++||||+..... ..++|+..+.+|+.|+..+.+++.+. +. ++|.+||+- -.|..
T Consensus 94 lVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~-------------- 159 (256)
T KOG1200|consen 94 LVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNF-------------- 159 (256)
T ss_pred EEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccc--------------
Confidence 999999865432 23468899999999998888877543 23 899999953 22211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
.+..|+.+|.-.--+.+.++++ .++++.++-||+|-.|.. ..+-+..++.++...|+.-+|+
T Consensus 160 ---GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT----~~mp~~v~~ki~~~iPmgr~G~-------- 224 (256)
T KOG1200|consen 160 ---GQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMT----EAMPPKVLDKILGMIPMGRLGE-------- 224 (256)
T ss_pred ---cchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhh----hhcCHHHHHHHHccCCccccCC--------
Confidence 1255777766444333333332 389999999999988864 2233566677777766665554
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+|+|..+.++..... .| .+.+++|
T Consensus 225 -~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 225 -AEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred -HHHHHHHHHHHhccccccccceeEEEecc
Confidence 6899999988884332 24 6777665
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=129.27 Aligned_cols=200 Identities=13% Similarity=0.024 Sum_probs=128.9
Q ss_pred EEEEEcCCchhHHHHHHHHHh----CCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccc-----c----C-
Q 013467 118 RIVVTGGAGFVGSHLVDRLIA----RGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPL-----L----L- 179 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~----~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~-----~----~- 179 (442)
.++||||+++||.+++++|++ .|++|++++|+.....+ +...+ ...++.++.+|+.+.. + .
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~-~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQ-LKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHH-HHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 69999999986432221 11111 1235778888886641 1 1
Q ss_pred ------CCCEEEEecccCCCC--cc-----cCChhHHHHHhHHHHHHHHHHHH----Hc-C--CeEEEeecCccccCCCC
Q 013467 180 ------EVDQIYHLACPASPV--HY-----KFNPVKTIKTNVVGTLNMLGLAK----RV-G--ARFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 180 ------~~d~Vih~A~~~~~~--~~-----~~~~~~~~~~nv~gt~~ll~~a~----~~-g--~r~i~iSS~~vy~~~~~ 239 (442)
+.|+||||||..... .. .+.+...+++|+.++..+.+.+. +. + .++|++||...+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 126999999964321 11 12356789999999877776553 32 3 3799999976531
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCCc
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPL 315 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~ 315 (442)
+......|+.+|.+.+.+++.++.+ .|+++.++.||++-.+..... ....-......+....
T Consensus 157 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-- 222 (256)
T TIGR01500 157 ------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELK-- 222 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHH--
Confidence 2223467999999999999988765 489999999998865421000 0000000000011000
Q ss_pred EEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 316 ~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
....+...+|+|++++.++.+
T Consensus 223 -------~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 223 -------AKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred -------hcCCCCCHHHHHHHHHHHHhc
Confidence 111366789999999999863
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=129.92 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=121.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
..++|+|+||||+|+||++++++|.++|++|++++|+.+...+.... ....+..+.+|+.+. .+.++|++|||
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 34678999999999999999999999999999998864322111111 112356677777664 35679999999
Q ss_pred cccCCCCc-ccCChhHHHHHhHHHHHHHHHHHHH----cC----C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPASPVH-YKFNPVKTIKTNVVGTLNMLGLAKR----VG----A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 188 A~~~~~~~-~~~~~~~~~~~nv~gt~~ll~~a~~----~g----~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
||...... ..++..+.+++|+.++.++++++.. .+ . .+|.+|+... .+ ....
T Consensus 253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-----------------~~-~~~~ 314 (406)
T PRK07424 253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-----------------NP-AFSP 314 (406)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-----------------cC-CCch
Confidence 98643222 1224567899999999999988642 22 2 3455554221 11 1124
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
.|+.||.+.+.+..-...+.+..+.++.||.+..+ + .+ ...+..+|+|+.+
T Consensus 315 ~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~--------~-----------~~----------~~~~spe~vA~~i 365 (406)
T PRK07424 315 LYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN--------L-----------NP----------IGVMSADWVAKQI 365 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC--------C-----------Cc----------CCCCCHHHHHHHH
Confidence 69999999998764332334555555555432110 0 00 1236789999999
Q ss_pred HHHHcCCCCccE
Q 013467 338 MRLMEGEHVGPF 349 (442)
Q Consensus 338 ~~~l~~~~~g~~ 349 (442)
+.+++++...++
T Consensus 366 l~~i~~~~~~i~ 377 (406)
T PRK07424 366 LKLAKRDFRNII 377 (406)
T ss_pred HHHHHCCCCEEE
Confidence 999988776543
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=122.55 Aligned_cols=194 Identities=12% Similarity=0.158 Sum_probs=129.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEecccccc------------ccCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
|+++||||++.||..++++|. +|++|++++|+..... .+...+ ....+.++.+|+.+. ...++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQ-GLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHH-HHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999998 5999999998643222 221111 112467788888764 12358
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHH----HHHcC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~----a~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|++|||||........ ....+..++|+.+...++.. +.+.+ .++|++||...+-
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---------------- 142 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR---------------- 142 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc----------------
Confidence 9999999975432211 12345567888887655443 44443 4899999975431
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+ .|+++.++.||.+..+... ...+.+ -..
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~---------------~~~~~~---------~~~ 198 (246)
T PRK05599 143 ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTT---------------GMKPAP---------MSV 198 (246)
T ss_pred CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhc---------------CCCCCC---------CCC
Confidence 1122367999999999999888765 4899999999988764210 000000 024
Q ss_pred CHHHHHHHHHHHHcCCCCc-cEEec
Q 013467 329 FVSDLVEGLMRLMEGEHVG-PFNLG 352 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~~g-~~~i~ 352 (442)
..+|+|++++.++.+...+ .+.+.
T Consensus 199 ~pe~~a~~~~~~~~~~~~~~~~~~~ 223 (246)
T PRK05599 199 YPRDVAAAVVSAITSSKRSTTLWIP 223 (246)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEeC
Confidence 6799999999999886543 44443
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=139.45 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++++||||+++||..++++|+++|++|++++|+.....+ ....+ ..++.++.+|+.+.. +.++|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD 81 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARE-RADSL-GPDHHALAMDVSDEAQIREGFEQLHREFGRID 81 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceeEEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence 45689999999999999999999999999999886432222 11111 234567788886641 23599
Q ss_pred EEEEecccCCC------CcccCChhHHHHHhHHHHHHHHHHHHHc----C--CeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASP------VHYKFNPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 183 ~Vih~A~~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~----g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+||||||...+ ....+++...+++|+.++..+++++... + .++|++||.....
T Consensus 82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~--------------- 146 (520)
T PRK06484 82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV--------------- 146 (520)
T ss_pred EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC---------------
Confidence 99999986321 1112346778999999999988877432 2 4899999976432
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCC
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~ 293 (442)
+......|+.+|.+.+.+++.++.+ .++++++|+||.+..+.
T Consensus 147 -~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 147 -ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 1122367999999999999988776 38999999999886653
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=115.62 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=111.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc--ccc--CCCceeEEeccccccc------------cC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM--HHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~--~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
++++||||+|+||.+++++|+++|. .|+++.|+......... ..+ ...++.++.+|+.+.. ..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999996 68888775432221110 111 1245677888886531 13
Q ss_pred CCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
.+|.|||++|...... ..+++...+++|+.++.++++++++.+. ++|++||....- +..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~----------------~~~ 144 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL----------------GNP 144 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc----------------CCC
Confidence 4799999998643221 1134567789999999999999988775 899999865421 112
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCcee
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~ 290 (442)
....|+.+|...+.+++.+ +..+++++++.||.+-
T Consensus 145 ~~~~y~~sk~~~~~~~~~~-~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 145 GQANYAAANAFLDALAAHR-RARGLPATSINWGAWA 179 (180)
T ss_pred CchhhHHHHHHHHHHHHHH-HhcCCceEEEeecccc
Confidence 2357999999999999665 5568999999987653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=108.77 Aligned_cols=195 Identities=14% Similarity=0.138 Sum_probs=131.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|||.|.||||.+|+.|++++++|||+|++++|+....... ..+.+.+.|+.+. .+.+.|+||..-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 6899999999999999999999999999999965433221 3455666666554 567899999876532
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCc-cccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
. .+.. .........|++..+.+++ |++.+...+ .|-+++... .+ .|..|...|...+..+|.
T Consensus 74 ~-----~~~~---~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rL--vD-----~p~fP~ey~~~A~~~ae~- 137 (211)
T COG2910 74 A-----SDND---ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRL--VD-----TPDFPAEYKPEALAQAEF- 137 (211)
T ss_pred C-----CChh---HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCcee--ec-----CCCCchhHHHHHHHHHHH-
Confidence 1 1111 1233447788899999898 999888765 343333111 11 344444556777777764
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
+..+..+.+++|+.+.|..+|-|+......+ +.+..+..-. .--++|...|.|.+++..++++..
T Consensus 138 L~~Lr~~~~l~WTfvSPaa~f~PGerTg~yr---------lggD~ll~n~---~G~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 138 LDSLRAEKSLDWTFVSPAAFFEPGERTGNYR---------LGGDQLLVNA---KGESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred HHHHhhccCcceEEeCcHHhcCCccccCceE---------eccceEEEcC---CCceeeeHHHHHHHHHHHHhcccc
Confidence 3445455579999999999998875322211 2222233211 223788889999999999998854
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=125.78 Aligned_cols=214 Identities=13% Similarity=0.115 Sum_probs=129.2
Q ss_pred EEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCCCEE
Q 013467 120 VVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEVDQI 184 (442)
Q Consensus 120 lVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d~V 184 (442)
+||||+++||.+++++|+++| ++|++.+|+..... .....+ ...++.++.+|+.+.. ..++|++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAE-RAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 599999999999999999999 99999988543211 111111 1235677788886641 2358999
Q ss_pred EEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHH----HHcC---CeEEEeecCccccCCC-C--CC---C----
Q 013467 185 YHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLA----KRVG---ARFLLTSTSEVYGDPL-Q--HP---Q---- 242 (442)
Q Consensus 185 ih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a----~~~g---~r~i~iSS~~vy~~~~-~--~~---~---- 242 (442)
|||||...... ..+.++..+++|+.|+..+++.+ ++.+ .++|++||...+-... . .+ +
T Consensus 80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
T PLN00015 80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 159 (308)
T ss_pred EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence 99999743211 12346678999999977775554 4443 4999999976431100 0 00 0
Q ss_pred ------CCC---CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHH
Q 013467 243 ------KET---YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQA 309 (442)
Q Consensus 243 ------~E~---~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~ 309 (442)
.+. .+...........|+.||++.+.+++.++++ .|+++++++||+|....+..........+. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~-~~ 238 (308)
T PLN00015 160 GLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLF-PP 238 (308)
T ss_pred hhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHH-HH
Confidence 000 0000112234467999999988877777665 379999999999964322111111111000 00
Q ss_pred HcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 310 LRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
+.. .. ...+...++.|+.++.++.++
T Consensus 239 ~~~--~~-------~~~~~~pe~~a~~~~~l~~~~ 264 (308)
T PLN00015 239 FQK--YI-------TKGYVSEEEAGKRLAQVVSDP 264 (308)
T ss_pred HHH--HH-------hcccccHHHhhhhhhhhcccc
Confidence 000 00 012456799999999887654
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=124.36 Aligned_cols=208 Identities=12% Similarity=0.051 Sum_probs=130.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC---------CccccccccC--CCceeEEecccccc------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---------RKENVMHHFG--NPNFELIRHDVVEP------ 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~---------~~~~~~~~~~--~~~v~~~~~D~~~~------ 176 (442)
+++++++||||+++||..++++|++.|++|++++|+... ..+.....+. ...+.++.+|+.+.
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 346799999999999999999999999999999986421 1111111111 12466788888765
Q ss_pred ------ccCCCCEEEEec-ccCC-----CCccc---CChhHHHHHhHHHHHHHHHHHH----HcC-CeEEEeecCcc-cc
Q 013467 177 ------LLLEVDQIYHLA-CPAS-----PVHYK---FNPVKTIKTNVVGTLNMLGLAK----RVG-ARFLLTSTSEV-YG 235 (442)
Q Consensus 177 ------~~~~~d~Vih~A-~~~~-----~~~~~---~~~~~~~~~nv~gt~~ll~~a~----~~g-~r~i~iSS~~v-y~ 235 (442)
.+.++|++|||| |... ...+. +.+.+.+++|+.++..+++++. +.+ .++|++||... +.
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~ 165 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN 165 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence 123589999999 6321 11111 2355678899998877776653 333 38999998543 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC
Q 013467 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK 312 (442)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 312 (442)
. .+......|+.+|.+...+++.++.+. |+++.+|.||.|-.+.. ..... ...
T Consensus 166 ~--------------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~--------~~~~~--~~~ 221 (305)
T PRK08303 166 A--------------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMM--------LDAFG--VTE 221 (305)
T ss_pred C--------------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHH--------HHhhc--cCc
Confidence 1 011123569999999999998887754 79999999998765421 00000 000
Q ss_pred CCc-EEecCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 313 EPL-TVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 313 ~~~-~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
... ..........-+...+|++.++++++..+.
T Consensus 222 ~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~~ 255 (305)
T PRK08303 222 ENWRDALAKEPHFAISETPRYVGRAVAALAADPD 255 (305)
T ss_pred cchhhhhccccccccCCCHHHHHHHHHHHHcCcc
Confidence 000 000000001123468999999999997653
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-12 Score=122.90 Aligned_cols=208 Identities=20% Similarity=0.140 Sum_probs=120.5
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccC----C
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLL----E 180 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~----~ 180 (442)
....++++|+|+||||.+|+-+++.|+++|+.|+++.|+.....+.............+..+.... ... .
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~ 153 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKG 153 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccc
Confidence 344567799999999999999999999999999999997654444333111122222222222211 111 1
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
..+++-+++ .....+ +...-+.+...|+.|++++|+.+|+ ||+++|+++.-.. +... ........+
T Consensus 154 ~~~v~~~~g--grp~~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~------~~~~----~~~~~~~~~ 220 (411)
T KOG1203|consen 154 VVIVIKGAG--GRPEEE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKF------NQPP----NILLLNGLV 220 (411)
T ss_pred ceeEEeccc--CCCCcc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCccc------CCCc----hhhhhhhhh
Confidence 334444443 212211 1222345889999999999999998 9999998764211 0100 000001234
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
-.+|..+|.++ ++.|++++|||++...-...... .. .....+...-+++ .--.+.-.|+|+.++.
T Consensus 221 ~~~k~~~e~~~----~~Sgl~ytiIR~g~~~~~~~~~~-----~~----~~~~~~~~~~~~~--~~~~i~r~~vael~~~ 285 (411)
T KOG1203|consen 221 LKAKLKAEKFL----QDSGLPYTIIRPGGLEQDTGGQR-----EV----VVDDEKELLTVDG--GAYSISRLDVAELVAK 285 (411)
T ss_pred hHHHHhHHHHH----HhcCCCcEEEeccccccCCCCcc-----ee----cccCccccccccc--cceeeehhhHHHHHHH
Confidence 46677777666 56799999999987554321100 00 0001111111111 1135667899999999
Q ss_pred HHcCCCC
Q 013467 340 LMEGEHV 346 (442)
Q Consensus 340 ~l~~~~~ 346 (442)
++.++..
T Consensus 286 all~~~~ 292 (411)
T KOG1203|consen 286 ALLNEAA 292 (411)
T ss_pred HHhhhhh
Confidence 9988754
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=116.89 Aligned_cols=211 Identities=17% Similarity=0.108 Sum_probs=139.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc----cCCCceeEEecccccc------------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH----FGNPNFELIRHDVVEP------------ 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~------------ 176 (442)
...+|+++||||+..||+.++.+|++.|.+|++.+|..+...+..... ....++..+.+|+.+.
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 456779999999999999999999999999999999655432222211 1234577888888643
Q ss_pred c-cCCCCEEEEecccCCCCc--cc---CChhHHHHHhHHH-HHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCC
Q 013467 177 L-LLEVDQIYHLACPASPVH--YK---FNPVKTIKTNVVG-TLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKE 244 (442)
Q Consensus 177 ~-~~~~d~Vih~A~~~~~~~--~~---~~~~~~~~~nv~g-t~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E 244 (442)
. +.++|++|||||...... ++ +.++..+++|+.| ...+..++ ++.+. .++++||...+..
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~-------- 156 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGP-------- 156 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccC--------
Confidence 2 346999999999766442 22 3477789999995 55555544 33334 7888888764321
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCc-cCCCchHHHHHHHHHcCCCcEEecC
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMC-IDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
.......|+.+|.+.+.+++..+.+. |+++.+|-||.|..+... .-.......+..........
T Consensus 157 -------~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~----- 224 (270)
T KOG0725|consen 157 -------GPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAV----- 224 (270)
T ss_pred -------CCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhcccccc-----
Confidence 11111679999999999999988754 899999999998886410 00001111221110001111
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
..-.+...+|++.++.+++....
T Consensus 225 --p~gr~g~~~eva~~~~fla~~~a 247 (270)
T KOG0725|consen 225 --PLGRVGTPEEVAEAAAFLASDDA 247 (270)
T ss_pred --ccCCccCHHHHHHhHHhhcCccc
Confidence 12346678999999999887753
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-11 Score=115.90 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=130.6
Q ss_pred CCCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCCCCc--------ccccc---ccCC---CceeEEecccc---
Q 013467 114 RKGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFTGRK--------ENVMH---HFGN---PNFELIRHDVV--- 174 (442)
Q Consensus 114 ~~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~--------~~~~~---~~~~---~~v~~~~~D~~--- 174 (442)
.++|+++|||| +.+||..+++.|.++|.+|++ .|.....+ ..... .... .....+.+|+.
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDT 85 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCc
Confidence 56789999999 799999999999999999988 54321110 00000 0000 01233444441
Q ss_pred ----------------------c-------cccCCCCEEEEecccCC----C--CcccCChhHHHHHhHHHHHHHHHHHH
Q 013467 175 ----------------------E-------PLLLEVDQIYHLACPAS----P--VHYKFNPVKTIKTNVVGTLNMLGLAK 219 (442)
Q Consensus 175 ----------------------~-------~~~~~~d~Vih~A~~~~----~--~~~~~~~~~~~~~nv~gt~~ll~~a~ 219 (442)
+ +.+.++|++|||||... + ....+++...+++|+.++..+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~ 165 (303)
T PLN02730 86 PEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFG 165 (303)
T ss_pred cccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 01235899999997432 1 11123577889999999988887764
Q ss_pred Hc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeC
Q 013467 220 RV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (442)
Q Consensus 220 ~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G 291 (442)
.. +.++|++||..... +.... ..|+.+|.+.+.+++.++.+ .|+++..|.||.+-.
T Consensus 166 p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T 229 (303)
T PLN02730 166 PIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGS 229 (303)
T ss_pred HHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccC
Confidence 32 24899999976431 11111 36999999999999998875 378999999998876
Q ss_pred CCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+.... ....+..........+ ...+...+|++.++++++.... .| .+.+.++
T Consensus 230 ~~~~~--~~~~~~~~~~~~~~~p---------l~r~~~peevA~~~~fLaS~~a~~itG~~l~vdGG 285 (303)
T PLN02730 230 RAAKA--IGFIDDMIEYSYANAP---------LQKELTADEVGNAAAFLASPLASAITGATIYVDNG 285 (303)
T ss_pred chhhc--ccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 53210 0001111111111111 1134568999999999997543 34 4544444
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9e-12 Score=115.49 Aligned_cols=160 Identities=8% Similarity=0.008 Sum_probs=110.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------ccC-
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LLL- 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~~- 179 (442)
.++++++||||++.||..++++|+++|++|+++.|+.....+...... ...++..+.+|+.+. .+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 345799999999999999999999999999999886432221111110 123455667776553 223
Q ss_pred CCCEEEEecccCCCC-cccC----ChhHHHHHhHHHHHHHHHHH----HHcC--CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV-HYKF----NPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~-~~~~----~~~~~~~~nv~gt~~ll~~a----~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|++|||||..... .+.+ .+.+.++.|+.++..+++.+ ++.+ ..+|++||...+
T Consensus 83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-------------- 148 (227)
T PRK08862 83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH-------------- 148 (227)
T ss_pred CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC--------------
Confidence 699999999743221 1211 23446677888776665543 3433 389999985422
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~ 292 (442)
+ ....|+.+|...+.+++.++.+ .|+++..|.||++-.+
T Consensus 149 ---~--~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 ---Q--DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ---C--CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1 1356999999999999888765 4899999999988775
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-12 Score=112.67 Aligned_cols=205 Identities=19% Similarity=0.147 Sum_probs=139.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc-ccccCCCceeEEeccccccccCCCCEEEEecccCCCCcc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV-MHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHY 196 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~ 196 (442)
+.++.|++||.|+++++.....++.|-++.|+....-... .......+.+....|..+..+.++..++-+++-.
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggf----- 128 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGF----- 128 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCc-----
Confidence 6899999999999999999999999999988643221111 1111223344455556666777888888887632
Q ss_pred cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q 013467 197 KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR 275 (442)
Q Consensus 197 ~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~ 275 (442)
.+...+.+.|-....+-+++++++|+ +|+|+|... ||- .+..+ .+|-.+|+++|..+.+.
T Consensus 129 -gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~--------------~~~i~-rGY~~gKR~AE~Ell~~-- 189 (283)
T KOG4288|consen 129 -GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL--------------PPLIP-RGYIEGKREAEAELLKK-- 189 (283)
T ss_pred -cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC--------------CCccc-hhhhccchHHHHHHHHh--
Confidence 23456667888888888999999998 999999643 111 23333 58999999999877664
Q ss_pred hcCCcEEEEeeCceeCCCCccCCCchHH---HHHHHHHcC-----CCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-
Q 013467 276 GAGVEVRIARIFNTYGPRMCIDDGRVVS---NFVAQALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV- 346 (442)
Q Consensus 276 ~~g~~~~iiRp~~v~G~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~- 346 (442)
.+++-+++|||.+||.+.-..-...+. .-+.+.++. ..++..+ .-....+.+++||.+.+.++++|+-
T Consensus 190 -~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg--~l~~ppvnve~VA~aal~ai~dp~f~ 266 (283)
T KOG4288|consen 190 -FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLG--PLLAPPVNVESVALAALKAIEDPDFK 266 (283)
T ss_pred -cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccc--cccCCCcCHHHHHHHHHHhccCCCcC
Confidence 458889999999999853221111111 122222222 2244433 3667899999999999999999864
Q ss_pred ccE
Q 013467 347 GPF 349 (442)
Q Consensus 347 g~~ 349 (442)
|++
T Consensus 267 Gvv 269 (283)
T KOG4288|consen 267 GVV 269 (283)
T ss_pred cee
Confidence 444
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-12 Score=110.56 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=106.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC-CCCCcccccccc--CCCceeEEecccccc------------ccCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF-FTGRKENVMHHF--GNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~-~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~~ 180 (442)
|+|+||||++.||..++++|+++|. .|+++.|+ .......+...+ ...++.++++|+.+. ....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999965 77777775 011112221111 236788999998765 1236
Q ss_pred CCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
+|++|||+|........+ ...+.+++|+.+...+.+++...+. ++|++||.... .+...
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------------~~~~~ 144 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV----------------RGSPG 144 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT----------------SSSTT
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc----------------cCCCC
Confidence 999999999866433332 3567899999999999998887444 89999997754 23334
Q ss_pred CChhHHHHHHHHHHHHHHHhh
Q 013467 256 RSCYDEGKRTAETLTMDYHRG 276 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~ 276 (442)
...|+.+|++.+.+++.++++
T Consensus 145 ~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHh
Confidence 478999999999999998765
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=122.33 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=138.5
Q ss_pred cCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------cc-CCCCEEEEe
Q 013467 123 GGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LL-LEVDQIYHL 187 (442)
Q Consensus 123 Gat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~-~~~d~Vih~ 187 (442)
|++ +.||..++++|+++|++|++.+|+.+...+.+.........+++.+|+.++ .+ .++|++||+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~ 80 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN 80 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence 566 999999999999999999999997554322222222222345688998664 24 679999999
Q ss_pred cccCCC----Cccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPASP----VHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 188 A~~~~~----~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
++.... .... +.+...+++|+.++..+++.+... +..+|++||.... .+....
T Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~----------------~~~~~~ 144 (241)
T PF13561_consen 81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQ----------------RPMPGY 144 (241)
T ss_dssp EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGT----------------SBSTTT
T ss_pred ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhc----------------ccCccc
Confidence 987654 1211 246678899999999988877442 3479999987643 223333
Q ss_pred ChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 257 SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
..|+.+|.+.+.+++.++.+ .|+++.+|.||.+..+... .....+.+........++ ..+...+|
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~--~~~~~~~~~~~~~~~~pl---------~r~~~~~e 213 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTE--RIPGNEEFLEELKKRIPL---------GRLGTPEE 213 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHH--HHHTHHHHHHHHHHHSTT---------SSHBEHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchh--ccccccchhhhhhhhhcc---------CCCcCHHH
Confidence 58999999999999887653 5899999999988865310 000013333333333222 13456899
Q ss_pred HHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 333 LVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 333 va~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+|.++++++.... +| ++.+.+|
T Consensus 214 vA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 214 VANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred HHHHHHHHhCccccCccCCeEEECCC
Confidence 9999999998653 35 5555544
|
... |
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=108.22 Aligned_cols=171 Identities=15% Similarity=0.112 Sum_probs=120.8
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|.++|.||||-.|+.+++++++.+. +|+++.|+.....+.- ..+....+++-.++-......+.|+.+++-|
T Consensus 14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~-k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLg 92 (238)
T KOG4039|consen 14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD-KVVAQVEVDFSKLSQLATNEQGPDVLFCALG 92 (238)
T ss_pred HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc-ceeeeEEechHHHHHHHhhhcCCceEEEeec
Confidence 456788999999999999999999999984 8999988642222111 1111112333333334446678999999887
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
-.... ...+.++++..+-...++++|++.|+ +|+.+||.+. +......|.+.|...|+
T Consensus 93 TTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GA------------------d~sSrFlY~k~KGEvE~ 151 (238)
T KOG4039|consen 93 TTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGA------------------DPSSRFLYMKMKGEVER 151 (238)
T ss_pred ccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCC------------------Ccccceeeeeccchhhh
Confidence 53322 22444567888888899999999998 8999999875 22334679999999998
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHH
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVA 307 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~ 307 (442)
-+.++. --+++|+|||.+.|.+.....+.|+.+++.
T Consensus 152 ~v~eL~---F~~~~i~RPG~ll~~R~esr~geflg~~~~ 187 (238)
T KOG4039|consen 152 DVIELD---FKHIIILRPGPLLGERTESRQGEFLGNLTA 187 (238)
T ss_pred hhhhcc---ccEEEEecCcceecccccccccchhhheeh
Confidence 886652 235899999999998876665655555443
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-11 Score=109.67 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=116.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc--------------CCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL--------------LEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--------------~~~d 182 (442)
+.|+|||.-...|..++++|.++|+.|++-+-..++. +.+......++...++.|++++.. .+.=
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~ga-e~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gLw 108 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGA-ESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGLW 108 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchH-HHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccccce
Confidence 3699999999999999999999999999998543332 333333336777888889877522 2467
Q ss_pred EEEEecccC---CCCccc--CChhHHHHHhHHHHHHHHH----HHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPA---SPVHYK--FNPVKTIKTNVVGTLNMLG----LAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~---~~~~~~--~~~~~~~~~nv~gt~~ll~----~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
.||||||.. ++.+|. +++...+++|+.|+..+.. ..+++.-|+|++||..-- .+.
T Consensus 109 glVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR----------------~~~ 172 (322)
T KOG1610|consen 109 GLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR----------------VAL 172 (322)
T ss_pred eEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC----------------ccC
Confidence 899999954 334443 3578899999999666544 556666699999997531 233
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCC
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~ 292 (442)
.....|+.||.+.|.+...+.++ .|+++.+|-|| +|-.
T Consensus 173 p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 173 PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 34478999999999887776554 49999999999 4443
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=112.09 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=114.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC-ccccccccC-C--CceeEEeccccc-c------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR-KENVMHHFG-N--PNFELIRHDVVE-P------------ 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~-~~~~~~~~~-~--~~v~~~~~D~~~-~------------ 176 (442)
..+++|+||||++.||..+++.|+++|+.|+++.|..... .+....... . ..+.+...|+.+ .
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~ 82 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE 82 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999999998888764431 111111100 0 256667788875 3
Q ss_pred ccCCCCEEEEecccCCCC-c----ccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.+.++|++|||||..... . ..+.++..+++|+.+...+.+++...-. ++|++||.... ...
T Consensus 83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~----------- 150 (251)
T COG1028 83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGP----------- 150 (251)
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCC-----------
Confidence 123499999999975421 1 1234777899999998888775543333 89999998653 211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCC
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~ 292 (442)
.. ...|+.||.+.+.+++.+..+ .|+++..|.||.+-.+
T Consensus 151 ---~~-~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 151 ---PG-QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred ---CC-cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 00 368999999999999888754 4899999999955533
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=106.04 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=113.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc------------CCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL------------LEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~~d 182 (442)
.+-+||||||+.+||..++++|.+.|.+|++..|+...-.+... ..+.+.-..+|+.|... -..+
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~---~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lN 80 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA---ENPEIHTEVCDVADRDSRRELVEWLKKEYPNLN 80 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh---cCcchheeeecccchhhHHHHHHHHHhhCCchh
Confidence 34589999999999999999999999999999885332222211 34556666777766421 2489
Q ss_pred EEEEecccCCCCccc------CChhHHHHHhHHHHHHHHHHH----HHcC-CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~------~~~~~~~~~nv~gt~~ll~~a----~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|||||.....+.. +...+.+.+|+.++..|..+. .+.. +.+|.+||.-.+ .
T Consensus 81 vliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf----------------v 144 (245)
T COG3967 81 VLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF----------------V 144 (245)
T ss_pred eeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc----------------C
Confidence 999999987654433 123456789999988877655 3333 489999997655 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHH---hhcCCcEEEEeeCceeCC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYH---RGAGVEVRIARIFNTYGP 292 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~---~~~g~~~~iiRp~~v~G~ 292 (442)
|....-.|+.+|++...+...+. +..+++|+=+-|+.|-.+
T Consensus 145 Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 33334569999999998776654 344788888889887764
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=106.86 Aligned_cols=208 Identities=19% Similarity=0.176 Sum_probs=139.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc--cccccccCCCceeEEecccccc------------ccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK--ENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
.++++++|||.|+||..+.++|+++|..+.+++-+.+..+ .++........+-|+++|+.+. .+..
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~ 83 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT 83 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence 4679999999999999999999999987777765433322 2233344556889999999774 2335
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHH----HHHHHHHHHHc--CC--eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVG----TLNMLGLAKRV--GA--RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~g----t~~ll~~a~~~--g~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|++||.||+.. +.+++..+.+|+.| |...+....+. |. -+|.+||..-. +|
T Consensus 84 iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL----------------~P 143 (261)
T KOG4169|consen 84 IDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL----------------DP 143 (261)
T ss_pred eEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc----------------Cc
Confidence 999999999754 45678888999876 55566666443 23 69999996433 45
Q ss_pred CCCCChhHHHHHHHHHHHHHHH-----hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC----Cce
Q 013467 253 IGVRSCYDEGKRTAETLTMDYH-----RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD----GKQ 323 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~-----~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 323 (442)
......|+.||...-.+.|.++ ++.|+++..++||.+-- .++..+-.........+ .-.
T Consensus 144 ~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t------------~l~~~~~~~~~~~e~~~~~~~~l~ 211 (261)
T KOG4169|consen 144 MPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRT------------DLAENIDASGGYLEYSDSIKEALE 211 (261)
T ss_pred cccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchH------------HHHHHHHhcCCcccccHHHHHHHH
Confidence 5555789999998887777743 45699999999975321 11111111111110100 000
Q ss_pred eEeccCHHHHHHHHHHHHcCCCCc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~~g-~~~i~~~ 354 (442)
...-....+++.-++.++|.+..| +|-+..+
T Consensus 212 ~~~~q~~~~~a~~~v~aiE~~~NGaiw~v~~g 243 (261)
T KOG4169|consen 212 RAPKQSPACCAINIVNAIEYPKNGAIWKVDSG 243 (261)
T ss_pred HcccCCHHHHHHHHHHHHhhccCCcEEEEecC
Confidence 112345688999999999998888 6766655
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-10 Score=108.92 Aligned_cols=214 Identities=10% Similarity=-0.013 Sum_probs=127.4
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCC--------CCCcccccc----c-------------cCCCce
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFF--------TGRKENVMH----H-------------FGNPNF 166 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~--------~~~~~~~~~----~-------------~~~~~v 166 (442)
..+|+++||||. ..||+++++.|+++|.+|++.++.. ....+.... . ......
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 456799999995 8999999999999999999976531 000000000 0 000011
Q ss_pred eEEeccccc--------------------cccCCCCEEEEecccCC--CCc----ccCChhHHHHHhHHHHHHHHHHHHH
Q 013467 167 ELIRHDVVE--------------------PLLLEVDQIYHLACPAS--PVH----YKFNPVKTIKTNVVGTLNMLGLAKR 220 (442)
Q Consensus 167 ~~~~~D~~~--------------------~~~~~~d~Vih~A~~~~--~~~----~~~~~~~~~~~nv~gt~~ll~~a~~ 220 (442)
+-+..|+.+ ..+.++|++|||||... ... ..+++...+++|+.++.++++++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111111111 12235999999998532 111 1234677899999999999887754
Q ss_pred c---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCC
Q 013467 221 V---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (442)
Q Consensus 221 ~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~ 292 (442)
. +.++|++||....- +.... ..|+.+|.+.+.+++.++.+ .|+++..|.||.+-.+
T Consensus 166 ~m~~~G~ii~iss~~~~~----------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~ 229 (299)
T PRK06300 166 IMNPGGSTISLTYLASMR----------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASR 229 (299)
T ss_pred HhhcCCeEEEEeehhhcC----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccCh
Confidence 2 23788888855321 11111 26999999999999988765 3899999999988765
Q ss_pred CCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.... -..............+ ...+...+|++.++++++..+. .| .+.+.++
T Consensus 230 ~~~~--~~~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG 284 (299)
T PRK06300 230 AGKA--IGFIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSPLASAITGETLYVDHG 284 (299)
T ss_pred hhhc--ccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 3200 0000111111111111 1134568999999999887542 34 4555443
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-11 Score=104.35 Aligned_cols=165 Identities=16% Similarity=0.069 Sum_probs=113.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCC-CCCCcccccc-ccCCCceeEEeccccccc--------------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMH-HFGNPNFELIRHDVVEPL-------------- 177 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~-~~~~~~~~~~-~~~~~~v~~~~~D~~~~~-------------- 177 (442)
.++.|+||||+.+||--|+++|++. |.++++-.++ .+...+.+.. ....+++.+++.|+....
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 3557999999999999999999987 5666655544 4332222222 124678999999986541
Q ss_pred cCCCCEEEEecccCCCCcccCC-----hhHHHHHhHHHHHHHHHHH----HHcC------------CeEEEeecCccccC
Q 013467 178 LLEVDQIYHLACPASPVHYKFN-----PVKTIKTNVVGTLNMLGLA----KRVG------------ARFLLTSTSEVYGD 236 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~~~-----~~~~~~~nv~gt~~ll~~a----~~~g------------~r~i~iSS~~vy~~ 236 (442)
..++|++|||||.......... +-..+++|..|+..+.+.+ +++. +.+|++||...-
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s-- 159 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS-- 159 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc--
Confidence 3468999999998665443332 4567899998876665543 2211 258889986532
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCC
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGP 292 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~ 292 (442)
.. .....+...|..||.+.-.+.++..-+. ++-++.++||||--.
T Consensus 160 ~~-----------~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TD 207 (249)
T KOG1611|consen 160 IG-----------GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTD 207 (249)
T ss_pred cC-----------CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcC
Confidence 00 0233445889999999999988876543 678889999998754
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=108.12 Aligned_cols=188 Identities=15% Similarity=0.106 Sum_probs=121.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc----CCCCEEEEecccCCCCcccCChhH
Q 013467 132 LVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL----LEVDQIYHLACPASPVHYKFNPVK 202 (442)
Q Consensus 132 lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~----~~~d~Vih~A~~~~~~~~~~~~~~ 202 (442)
++++|+++|++|++++|+..... ...++.+|+.+. .+ .++|+||||||... ..++..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~~ 66 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVEL 66 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHHH
Confidence 47889999999999998643210 123456666543 11 35899999998642 245778
Q ss_pred HHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC-----------CCCCCCCCCChhHHHHHHHHH
Q 013467 203 TIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW-----------GNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 203 ~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~-----------~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
.+++|+.++..+++++... +.+||++||...|+.....+..|... ....+......|+.+|.+.+.
T Consensus 67 ~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~ 146 (241)
T PRK12428 67 VARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALIL 146 (241)
T ss_pred hhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHH
Confidence 8999999999999988653 24999999998876332211111100 000233445789999999999
Q ss_pred HHHHHH-h---hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 269 LTMDYH-R---GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 269 ~v~~~~-~---~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
+++.++ . ..|+++.+|+||.+.++.... .....-....... . .....+...+|+|+++++++..+
T Consensus 147 ~~~~la~~e~~~~girvn~v~PG~v~T~~~~~----~~~~~~~~~~~~~-~------~~~~~~~~pe~va~~~~~l~s~~ 215 (241)
T PRK12428 147 WTMRQAQPWFGARGIRVNCVAPGPVFTPILGD----FRSMLGQERVDSD-A------KRMGRPATADEQAAVLVFLCSDA 215 (241)
T ss_pred HHHHHHHHhhhccCeEEEEeecCCccCccccc----chhhhhhHhhhhc-c------cccCCCCCHHHHHHHHHHHcChh
Confidence 998877 3 348999999999998874311 0000000000000 0 01123567899999999988654
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=103.32 Aligned_cols=198 Identities=20% Similarity=0.174 Sum_probs=133.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEecccccc--------cc----CCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEP--------LL----LEVD 182 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~--------~~----~~~d 182 (442)
+|+||||+..||..++.++..+|++|+++.|+...-.+...+.- ....+.+...|+.+- .+ ..+|
T Consensus 35 hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~d 114 (331)
T KOG1210|consen 35 HILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPID 114 (331)
T ss_pred eEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCcc
Confidence 79999999999999999999999999999986443333222221 122355666777321 12 2489
Q ss_pred EEEEecccCCCCcccCC----hhHHHHHhHHHHHHHHHHHHHc----C-C-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~----~~~~~~~nv~gt~~ll~~a~~~----g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
.+|||||...+..+.+. .+...++|..|+.|++.++..+ . . +++++||.... .+
T Consensus 115 ~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~----------------~~ 178 (331)
T KOG1210|consen 115 NLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM----------------LG 178 (331)
T ss_pred eEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh----------------cC
Confidence 99999998877666553 4557899999999998876432 2 2 78888886532 34
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
+...+.|..+|.+...+.....++ .|+.++..-|+.+-.|+....+. .+-....+.. ...+.+.
T Consensus 179 i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~----------tkP~~t~ii~---g~ss~~~ 245 (331)
T KOG1210|consen 179 IYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENK----------TKPEETKIIE---GGSSVIK 245 (331)
T ss_pred cccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccc----------cCchheeeec---CCCCCcC
Confidence 455578888888887776666554 48999999999988887432110 0101111111 1124577
Q ss_pred HHHHHHHHHHHHcCC
Q 013467 330 VSDLVEGLMRLMEGE 344 (442)
Q Consensus 330 v~Dva~ai~~~l~~~ 344 (442)
.+++|.+++.=+.+.
T Consensus 246 ~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 246 CEEMAKAIVKGMKRG 260 (331)
T ss_pred HHHHHHHHHhHHhhc
Confidence 899999998866654
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=98.99 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=111.5
Q ss_pred CCCEEEEEc-CCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-------------cCC
Q 013467 115 KGLRIVVTG-GAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtG-atG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------~~~ 180 (442)
.+++|+||| +.|+||-+++++|.+.|+.|++..|..+...+ +. ...++.....|+.++. ...
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~-L~---~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ-LA---IQFGLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh-HH---HhhCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 455799886 57999999999999999999999886443222 21 1234566667765541 224
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
.|++|||||....... ...-++++++|+.|..++.++..+ +.-.+|++.|..+| -|
T Consensus 82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~----------------vp 145 (289)
T KOG1209|consen 82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV----------------VP 145 (289)
T ss_pred eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE----------------ec
Confidence 8999999996443211 123577899999998888887653 23389999998877 34
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYG 291 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G 291 (442)
....+.|..||++...+.+.+.-+ .|++++.+-+|.|-.
T Consensus 146 fpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 146 FPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred cchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 444588999999999887776433 378888777776543
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.4e-11 Score=99.69 Aligned_cols=203 Identities=19% Similarity=0.166 Sum_probs=134.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC---CCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL---EVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~---~~d~Vi 185 (442)
..++.|++||+.-+||+.++..|.+.|.+|+++.|....-.....+ ....+..+..|+... .+. .+|.++
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e--~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLV 82 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE--TPSLIIPIVGDLSAWEALFKLLVPVFPIDGLV 82 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh--CCcceeeeEecccHHHHHHHhhcccCchhhhh
Confidence 3466899999999999999999999999999998853322211111 122366677776542 222 379999
Q ss_pred EecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC--eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA--RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 186 h~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||||......+. .+.+..+++|+.+..++.+...+ .++ .+|.+||.... .+...
T Consensus 83 NNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~----------------R~~~n 146 (245)
T KOG1207|consen 83 NNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI----------------RPLDN 146 (245)
T ss_pred ccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc----------------cccCC
Confidence 999976543332 23556788999998877776432 232 69999997643 35555
Q ss_pred CChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
.+.|+.+|.+...+.+-++-+. .+++..+.|..+...... +++-+....+ ++. +--....|.-|+.
T Consensus 147 HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~-------dnWSDP~K~k-~mL---~riPl~rFaEV~e 215 (245)
T KOG1207|consen 147 HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGR-------DNWSDPDKKK-KML---DRIPLKRFAEVDE 215 (245)
T ss_pred ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccc-------cccCCchhcc-chh---hhCchhhhhHHHH
Confidence 5889999999999988887765 578888888887654210 0111111111 111 1112335778999
Q ss_pred HHHHHHHHHcCCC
Q 013467 333 LVEGLMRLMEGEH 345 (442)
Q Consensus 333 va~ai~~~l~~~~ 345 (442)
+..++.+++.+..
T Consensus 216 VVnA~lfLLSd~s 228 (245)
T KOG1207|consen 216 VVNAVLFLLSDNS 228 (245)
T ss_pred HHhhheeeeecCc
Confidence 9999999887654
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-09 Score=93.92 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=101.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc--ccccccc--CCCceeEEeccccccc------------cCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK--ENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+++||||+|.||..+++.|.++|. +|+++.|...... ......+ ....+.++.+|+.+.. ...
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 699999999999999999999985 8999988732121 1111111 2457888999987751 135
Q ss_pred CCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCc-cccCCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
++.|||+|+........+ .....+..-+.|+.+|.++...... .||++||+. ++|..
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~----------------- 144 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP----------------- 144 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T-----------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc-----------------
Confidence 799999999754332222 2455677889999999999988776 789999976 55432
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCc
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~ 288 (442)
....|+..-...+.+.+.. +..|.++.+|.-+.
T Consensus 145 gq~~YaaAN~~lda~a~~~-~~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 145 GQSAYAAANAFLDALARQR-RSRGLPAVSINWGA 177 (181)
T ss_dssp TBHHHHHHHHHHHHHHHHH-HHTTSEEEEEEE-E
T ss_pred chHhHHHHHHHHHHHHHHH-HhCCCCEEEEEccc
Confidence 2267999999999888765 44589988887654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-09 Score=122.84 Aligned_cols=162 Identities=19% Similarity=0.113 Sum_probs=118.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCc---------------------------------------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRK--------------------------------------- 154 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~--------------------------------------- 154 (442)
++++|+||||+++||..++++|+++ |.+|++++|+.....
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4679999999999999999999998 689999998721000
Q ss_pred ----ccc---cccc--CCCceeEEecccccccc-----------CCCCEEEEecccCCCCcc----cCChhHHHHHhHHH
Q 013467 155 ----ENV---MHHF--GNPNFELIRHDVVEPLL-----------LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVG 210 (442)
Q Consensus 155 ----~~~---~~~~--~~~~v~~~~~D~~~~~~-----------~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~g 210 (442)
... ...+ ....+.++.+|+.+... .++|.|||+||....... .+++...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 000 0000 12356788899877511 258999999997543322 23477789999999
Q ss_pred HHHHHHHHHHcCC-eEEEeecCcc-ccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc-CCcEEEEeeC
Q 013467 211 TLNMLGLAKRVGA-RFLLTSTSEV-YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIF 287 (442)
Q Consensus 211 t~~ll~~a~~~g~-r~i~iSS~~v-y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~iiRp~ 287 (442)
+.++++++..... +||++||... +|. .....|+.+|...+.+.+.+..+. ++++..|.||
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~-----------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG 2218 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYGN-----------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWG 2218 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECC
Confidence 9999999987654 8999999764 332 123679999999998888877665 6899999999
Q ss_pred ceeCCC
Q 013467 288 NTYGPR 293 (442)
Q Consensus 288 ~v~G~~ 293 (442)
.+-|..
T Consensus 2219 ~wdtgm 2224 (2582)
T TIGR02813 2219 PWDGGM 2224 (2582)
T ss_pred eecCCc
Confidence 876653
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=97.04 Aligned_cols=170 Identities=13% Similarity=0.026 Sum_probs=113.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCc-cccccccCCCceeEEec-ccc--ccccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRK-ENVMHHFGNPNFELIRH-DVV--EPLLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~-D~~--~~~~~~~d~Vih~ 187 (442)
.+|+||+|+|+.|.||+.++..|..++ .+++.+|+...... ..+.+.. ....+... |.. .+.+.++|+||++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~--~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHID--TPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcC--cCceEEEecCCCchHHHhCCCCEEEEC
Confidence 467799999999999999999998665 58999998211110 1111111 12233321 211 3678899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC--CCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ--HPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~--~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
||... ....+..+.+..|+..+.+++++++++++ ++|+++|-.+-.-..- ....+. ..+.+...||.+-+
T Consensus 84 aG~~~--~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~-----sg~p~~~viG~g~L 156 (321)
T PTZ00325 84 AGVPR--KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKA-----GVYDPRKLFGVTTL 156 (321)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhc-----cCCChhheeechhH
Confidence 99632 22345778899999999999999999998 8999999654321000 000111 23344456776656
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
..-++-...++..++....|+ ++|+|..
T Consensus 157 Ds~R~r~~la~~l~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 157 DVVRARKFVAEALGMNPYDVN-VPVVGGH 184 (321)
T ss_pred HHHHHHHHHHHHhCcChhheE-EEEEeec
Confidence 666777777778889988888 7888854
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.1e-09 Score=97.26 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=110.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc---------cC--CCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL---------LL--EVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~---------~~--~~d~ 183 (442)
.-.+|||||.+||+..+++|+++|.+|+.+.|..+.-..-..+..+ ..++.++..|..+.. +. ++.+
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgI 129 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGI 129 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEE
Confidence 3699999999999999999999999999999975433222222211 134555666654432 22 3678
Q ss_pred EEEecccCC--CCcccC----ChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPAS--PVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 184 Vih~A~~~~--~~~~~~----~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|||+|... |..+.+ ...+.+.+|+.++..+.+. +.+.+. -+|++||..-. .|
T Consensus 130 LVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~----------------~p 193 (312)
T KOG1014|consen 130 LVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL----------------IP 193 (312)
T ss_pred EEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc----------------cc
Confidence 999999765 222222 2345677888886655554 344454 79999997632 34
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM 294 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~ 294 (442)
....+.|+.+|...+.+...+.+++ |+.+..+-|..|-+...
T Consensus 194 ~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~ 238 (312)
T KOG1014|consen 194 TPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA 238 (312)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence 5555889999998888777766554 89999999988877643
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-09 Score=92.07 Aligned_cols=200 Identities=16% Similarity=0.088 Sum_probs=126.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-cccccccCCCceeEEeccccccc------------cCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
.+.+||||++-.||..++..+..++.+.....+...... +.+..... .......+|+.+.. ..+-|
T Consensus 6 r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~gkr~ 84 (253)
T KOG1204|consen 6 RKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGGKRD 84 (253)
T ss_pred ceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCCcee
Confidence 346999999999999999999999875544433222211 11111111 22233444444331 12489
Q ss_pred EEEEecccCCCCcc-------cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY-------KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 183 ~Vih~A~~~~~~~~-------~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.||||||...+... .+.+..+++.|+.+...+...+.. .. .-+|++||....
T Consensus 85 iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav--------------- 149 (253)
T KOG1204|consen 85 IIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV--------------- 149 (253)
T ss_pred EEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh---------------
Confidence 99999997655321 124788999999998888776643 32 258999997643
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCc-cCCC-chHHH---HHHHHHcCCCcEEecCCc
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMC-IDDG-RVVSN---FVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~ 322 (442)
.|+.....|+.+|++-+-+.+.++.+. ++++..++||.+-.+..- ..++ ++-+. ++......
T Consensus 150 -~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~---------- 218 (253)
T KOG1204|consen 150 -RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKES---------- 218 (253)
T ss_pred -ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhc----------
Confidence 567777899999999999999987654 889999999988765321 1111 11122 22222222
Q ss_pred eeEeccCHHHHHHHHHHHHcCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
-..+...+-++.+..++++.
T Consensus 219 --~~ll~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 219 --GQLLDPQVTAKVLAKLLEKG 238 (253)
T ss_pred --CCcCChhhHHHHHHHHHHhc
Confidence 13445567788888877765
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-09 Score=88.31 Aligned_cols=201 Identities=20% Similarity=0.231 Sum_probs=130.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d 182 (442)
++...+||||...+|...++.|.+.|..|.+++-..++-.+... .+ ..++-|...|++.+ .+...|
T Consensus 8 kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vak-el-g~~~vf~padvtsekdv~aala~ak~kfgrld 85 (260)
T KOG1199|consen 8 KGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAK-EL-GGKVVFTPADVTSEKDVRAALAKAKAKFGRLD 85 (260)
T ss_pred cCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHH-Hh-CCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence 44579999999999999999999999999999875443333222 22 24677888887654 234589
Q ss_pred EEEEecccCCCC----------cccCChhHHHHHhHHHHHHHHHHHHH---------cCC--eEEEeecCccccCCCCCC
Q 013467 183 QIYHLACPASPV----------HYKFNPVKTIKTNVVGTLNMLGLAKR---------VGA--RFLLTSTSEVYGDPLQHP 241 (442)
Q Consensus 183 ~Vih~A~~~~~~----------~~~~~~~~~~~~nv~gt~~ll~~a~~---------~g~--r~i~iSS~~vy~~~~~~~ 241 (442)
+.+||||..-.. +..++.++.+++|+.||.|+++.... .|- -+|.+.|...|....
T Consensus 86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~--- 162 (260)
T KOG1199|consen 86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT--- 162 (260)
T ss_pred eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc---
Confidence 999999964321 11234667889999999999886421 122 377777777764322
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHc-CCCcEE
Q 013467 242 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR-KEPLTV 317 (442)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~ 317 (442)
....|..||...--+..-.+++. |+++..|-||.+-.|-. ..++.-+..++. ..+++.
T Consensus 163 -------------gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpll-----sslpekv~~fla~~ipfps 224 (260)
T KOG1199|consen 163 -------------GQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLL-----SSLPEKVKSFLAQLIPFPS 224 (260)
T ss_pred -------------chhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhh-----hhhhHHHHHHHHHhCCCch
Confidence 23679999987766555554443 89999999987655532 112222223332 222221
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
..-+....+..+-.+++++--
T Consensus 225 --------rlg~p~eyahlvqaiienp~l 245 (260)
T KOG1199|consen 225 --------RLGHPHEYAHLVQAIIENPYL 245 (260)
T ss_pred --------hcCChHHHHHHHHHHHhCccc
Confidence 233456667777778888753
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=89.71 Aligned_cols=169 Identities=11% Similarity=0.006 Sum_probs=113.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccC-CCceeEE---eccccccccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFG-NPNFELI---RHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~-~~~v~~~---~~D~~~~~~~~~d~Vih~A~ 189 (442)
+.||+|+|++|.||+.++..|..++. +++++|+.. ......+... .....+. ..+-..+.+.++|+|||+||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 34899999999999999999997764 899999865 1111111100 1112222 12222357899999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
.... ......+.+..|...+.++++.+++.+. .+|+++|--+-+.. ...... ......+.+...||.+++..++
T Consensus 96 ~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~--~i~t~~-~~~~s~~p~~~viG~~~LDs~R 170 (323)
T PLN00106 96 VPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTV--PIAAEV-LKKAGVYDPKKLFGVTTLDVVR 170 (323)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccH--HHHHHH-HHHcCCCCcceEEEEecchHHH
Confidence 6432 2345788899999999999999999997 78888874331000 000000 0011344455788888999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCC
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGP 292 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~ 292 (442)
+-..++++.|++...|+- +|+|.
T Consensus 171 l~~~lA~~lgv~~~~V~~-~ViGe 193 (323)
T PLN00106 171 ANTFVAEKKGLDPADVDV-PVVGG 193 (323)
T ss_pred HHHHHHHHhCCChhheEE-EEEEe
Confidence 999999999999888864 55553
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=80.95 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~ 179 (442)
.++++++||||+|+||..+++.|.++|++|++++|..+... .....+ ....+.++.+|+.+. .+.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ-ATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45679999999999999999999999999999998643211 111111 123456778887543 123
Q ss_pred CCCEEEEecccCCCCc-ccC-ChhHHHHHhHHHHHH----HHHHHHHcC-------C-eEEEeecCcc
Q 013467 180 EVDQIYHLACPASPVH-YKF-NPVKTIKTNVVGTLN----MLGLAKRVG-------A-RFLLTSTSEV 233 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~-~~~-~~~~~~~~nv~gt~~----ll~~a~~~g-------~-r~i~iSS~~v 233 (442)
++|++|||||...... ++. ........|+.++.. +.....+.+ . ||-.+||.++
T Consensus 93 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 93 RIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 6999999999754322 112 211122344544333 333322222 3 7888888664
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-08 Score=69.65 Aligned_cols=59 Identities=27% Similarity=0.460 Sum_probs=40.8
Q ss_pred HHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 365 VVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 365 ~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
+++++.|.++++.+.+..+.++...+.|++|++++|||+|+++|+++++++.+|++++-
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np 59 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNP 59 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHST
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCc
Confidence 47889999999999999999999999999999999999999999999999999998763
|
... |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=83.34 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=67.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
|+++|||||||+|. +++.|.++|++|++++|+.... +.+...+ ...++.++.+|+.+.. ...+|.
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~-~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKL-ENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHH-HHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 58999999998876 9999999999999999854321 1111111 1246777888887641 124677
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCe-----EEEeecCc
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-----FLLTSTSE 232 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r-----~i~iSS~~ 232 (442)
+|+. +.+.++.++..+|++.|++ |+++=.+.
T Consensus 79 lv~~------------------vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 79 AVAW------------------IHSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred EEEe------------------ccccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 7764 4556788999999999854 88775443
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=85.17 Aligned_cols=113 Identities=16% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-------CeEEEEeCCCCCC-ccc-cccccCC---CceeEEeccccccccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-------DSVIVVDNFFTGR-KEN-VMHHFGN---PNFELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-------~~V~~l~r~~~~~-~~~-~~~~~~~---~~v~~~~~D~~~~~~~~~d~ 183 (442)
+.+|+||||+|+||++++..|+..+ .+|+++++..... .+. ..+..+. ...++...+-..+.+.++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 4589999999999999999999854 5899999854211 111 1111100 00011111222356789999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeec
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTST 230 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS 230 (442)
|||+||... ....+..+.++.|+.-...+.+..++.. . .+|.+|.
T Consensus 82 VI~tAG~~~--~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 82 AILVGAMPR--KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEEeCCcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999643 2344568889999999999998888873 2 5666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=83.94 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=113.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCC--CccccccccCC-----CceeEEeccccccccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTG--RKENVMHHFGN-----PNFELIRHDVVEPLLLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~--~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~ 181 (442)
+++|.|+|++|.||..++..|+..|. ++..+|+.... ......+.... ..+.+.. -..+.+.++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~--~~~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD--DPNVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec--CcHHHhCCC
Confidence 56899999999999999999998874 78888874322 11111111110 1233332 123578899
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeecC---ccccCCCCCCCCCCCCCCCCC-CC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTS---EVYGDPLQHPQKETYWGNVNP-IG 254 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS~---~vy~~~~~~~~~E~~~~~~~~-~~ 254 (442)
|+||.+||... ....+..+.+..|..-.+.+....++.+ . .+|.+|-- -+|-- -+. .+ +.
T Consensus 80 DivvitaG~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~------~k~-----sg~~p 146 (322)
T cd01338 80 DWALLVGAKPR--GPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA------MKN-----APDIP 146 (322)
T ss_pred CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH------HHH-----cCCCC
Confidence 99999999632 2234567789999999999999998876 3 56666631 01100 000 21 33
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
+...||.+++..+++...+++..|++...+|..+|||+.
T Consensus 147 ~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 147 PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 446799999999999999999999999999998999986
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.4e-06 Score=76.47 Aligned_cols=75 Identities=21% Similarity=0.505 Sum_probs=49.9
Q ss_pred CCCEEEEEcCC----------------chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec--cccc-
Q 013467 115 KGLRIVVTGGA----------------GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH--DVVE- 175 (442)
Q Consensus 115 ~~~~vlVtGat----------------G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--D~~~- 175 (442)
++++|+||+|. ||+|++|+++|+++|++|+++++.......... ....+..+.. |+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~~ 78 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQDK 78 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHHH
Confidence 46799999775 999999999999999999999864322111111 0112233444 3332
Q ss_pred --ccc--CCCCEEEEecccCC
Q 013467 176 --PLL--LEVDQIYHLACPAS 192 (442)
Q Consensus 176 --~~~--~~~d~Vih~A~~~~ 192 (442)
..+ .++|+|||+||...
T Consensus 79 l~~~~~~~~~D~VIH~AAvsD 99 (229)
T PRK09620 79 MKSIITHEKVDAVIMAAAGSD 99 (229)
T ss_pred HHHHhcccCCCEEEECccccc
Confidence 234 36899999999743
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-05 Score=75.33 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCchhHHH--HHHHHHhCCCeEEEEeCCCCCCcc-----------ccccccC--CCceeEEecccccc---
Q 013467 115 KGLRIVVTGGAGFVGSH--LVDRLIARGDSVIVVDNFFTGRKE-----------NVMHHFG--NPNFELIRHDVVEP--- 176 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~--lv~~Ll~~g~~V~~l~r~~~~~~~-----------~~~~~~~--~~~v~~~~~D~~~~--- 176 (442)
.+|++|||||++.+|.. +++.| +.|.+|+++++....... ....... ...+..+.+|+.+.
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v 118 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK 118 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 45799999999999999 89999 999999888753211111 1111111 12356778888764
Q ss_pred ---------ccCCCCEEEEecccC
Q 013467 177 ---------LLLEVDQIYHLACPA 191 (442)
Q Consensus 177 ---------~~~~~d~Vih~A~~~ 191 (442)
.+.++|+|||++|..
T Consensus 119 ~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 119 QKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHhcCCCCEEEECCccC
Confidence 234699999999965
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-06 Score=83.90 Aligned_cols=94 Identities=23% Similarity=0.309 Sum_probs=69.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vih~A~ 189 (442)
||+|+|.|+ |+||+.++..|+++| .+|++.+|+.....+-... ...+++..+.|+.+ +.+.+.|+|||++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~--~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL--IGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh--ccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 578999998 999999999999999 8999999964332222111 11256666766655 46678899999986
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
+. . ..+++++|.++|+.++=+|=
T Consensus 78 ~~--------------~----~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 78 PF--------------V----DLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred ch--------------h----hHHHHHHHHHhCCCEEEccc
Confidence 31 1 12789999999998887763
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=75.18 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=75.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHh-C--CCeEEEEeCCCCCCccccccccCCC-ceeEEe--ccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIA-R--GDSVIVVDNFFTGRKENVMHHFGNP-NFELIR--HDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~-~--g~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~--~D~~~~~~~~~d~Vih~A~~ 190 (442)
|+|+|+||+|.+|++++..|.. . ++++++++|... ......+..... ...+.. .+-..+.+.++|+||.++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 6899999999999999998855 2 468888887532 211111111111 122221 22213567889999999986
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeec
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS 230 (442)
.. ....+..+.+..|.....++++.+++.+. ++|.+.|
T Consensus 80 ~~--~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 80 AR--KPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 32 22335677889999999999999999987 7777776
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=71.82 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=106.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-----eEEEEeCCCCCCcccccc---cc--CCCceeEEecccccc----------
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-----SVIVVDNFFTGRKENVMH---HF--GNPNFELIRHDVVEP---------- 176 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-----~V~~l~r~~~~~~~~~~~---~~--~~~~v~~~~~D~~~~---------- 176 (442)
|.++|||++..||-.|+.+|++... .+++.+|+.+..++.-.. .. ....++++..|+.+-
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di 83 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDI 83 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHH
Confidence 4699999999999999999999754 456667765443322111 11 234678888888653
Q ss_pred --ccCCCCEEEEecccCCCCc--c-----------------------------cCChhHHHHHhHHHHHHHHHHHHH---
Q 013467 177 --LLLEVDQIYHLACPASPVH--Y-----------------------------KFNPVKTIKTNVVGTLNMLGLAKR--- 220 (442)
Q Consensus 177 --~~~~~d~Vih~A~~~~~~~--~-----------------------------~~~~~~~~~~nv~gt~~ll~~a~~--- 220 (442)
-+...|.|+-|||...... | .++...+++.||.|..-+++....
T Consensus 84 ~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll~ 163 (341)
T KOG1478|consen 84 KQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLC 163 (341)
T ss_pred HHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHhh
Confidence 2346899999998653321 1 122356788999997766654432
Q ss_pred -cC-CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeC
Q 013467 221 -VG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYG 291 (442)
Q Consensus 221 -~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G 291 (442)
.. .++|.+||...-.. .++-+|. ........|..||++...+-....++. |+.-.++.||....
T Consensus 164 ~~~~~~lvwtSS~~a~kk----~lsleD~---q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 164 HSDNPQLVWTSSRMARKK----NLSLEDF---QHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred cCCCCeEEEEeecccccc----cCCHHHH---hhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence 22 38999999764211 1111111 233344679999999987766654443 66677777776544
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=66.16 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=75.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccc---cccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKEN---VMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
|||.|+|++|.+|++++..|...+ .+++.+++........ +.+.............-..+.+.++|+||.+||..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 589999999999999999999987 4899999853211111 11111111122222223445688999999999863
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. ....+..+.++.|..-...+.+...+.+. .++.+|
T Consensus 81 ~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 R--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp S--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred c--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 2 23345777889999999999999999874 566655
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=72.93 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=46.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-------cccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-------PLLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-------~~~~~~d~Vih~A~~ 190 (442)
|++=-.+|||+|.+|+++|+++|++|++++|....... ...++.++..+..+ ..+.++|+|||+||.
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAv 91 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAV 91 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCcc
Confidence 34444789999999999999999999999875321110 11345555433322 244579999999997
Q ss_pred CC
Q 013467 191 AS 192 (442)
Q Consensus 191 ~~ 192 (442)
..
T Consensus 92 sd 93 (229)
T PRK06732 92 SD 93 (229)
T ss_pred CC
Confidence 53
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00018 Score=69.95 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=74.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCC--CCCccccccccCC-----CceeEEeccccccccCCCCE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFF--TGRKENVMHHFGN-----PNFELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~--~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~d~ 183 (442)
+|.|+||+|.||+.++..|..+|. +++.+|+.. +.......+.... ..+.+. +-..+.+.++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~~~~~~~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDPEEAFKDVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cChHHHhCCCCE
Confidence 799999999999999999998662 488888864 2111111111110 112222 223467889999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEee
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTS 229 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iS 229 (442)
|||+||.. .....+..+.+..|..-.+.+....++.+ . .+|.+|
T Consensus 80 VVitAG~~--~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 80 AILVGAFP--RKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEEeCCCC--CCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 99999963 33344677889999999999999998884 4 566665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.4e-05 Score=72.24 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=61.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc----ccc--CCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE----PLL--LEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~~--~~~d~Vih~A~~ 190 (442)
|+|||+||||. |+.+++.|.++|++|++..+........... ....++.+.+.. ..+ .++|+||+.+.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~----g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP 75 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH----QALTVHTGALDPQELREFLKRHSIDILVDATHP 75 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccccc----CCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH
Confidence 58999999999 9999999999999999998865433221111 111222221111 122 259999998753
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
-....+.|+.++|++.|+.++
T Consensus 76 ---------------fA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 76 ---------------FAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred ---------------HHHHHHHHHHHHHHHhCCcEE
Confidence 234567899999999997444
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=68.09 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=94.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCCC-ccccccccCCCc----eeEEeccccccccCCCCEEE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTGR-KENVMHHFGNPN----FELIRHDVVEPLLLEVDQIY 185 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~~-~~~~~~~~~~~~----v~~~~~D~~~~~~~~~d~Vi 185 (442)
+|.|+|++|.||+.++..|...+. +++.+|+..... .+.....+.... ..++..+-..+.+.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 489999999999999999988553 588998853321 111111111100 01111111235788999999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeecC---ccc--cCCCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTS---EVY--GDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS~---~vy--~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
|+||.... ...+..+.+..|+.-.+.+.+..++.+ . .+|.+|-- .+| -...+. .+.. .
T Consensus 81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~----------~~~~--v 146 (324)
T TIGR01758 81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPS----------IPPK--N 146 (324)
T ss_pred EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCC----------CCcc--e
Confidence 99996422 233477889999999999999998884 4 56666631 011 000000 0000 0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
.=..+.+..-++-...++..+++..-++-.+|+|..
T Consensus 147 ig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 182 (324)
T TIGR01758 147 FSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNH 182 (324)
T ss_pred EEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECC
Confidence 011122333344444556668888888777888863
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0005 Score=66.64 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=74.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCC--CCCcccccc---cc--CCCceeEEe-ccccccccCCCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFF--TGRKENVMH---HF--GNPNFELIR-HDVVEPLLLEVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~--~~~~~~~~~---~~--~~~~v~~~~-~D~~~~~~~~~d~Vih 186 (442)
|+|.|+|++|.+|..++..|+..|+ +|++++|.. +.......+ .+ ......+.- .| ...+.++|+||-
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence 5899999999999999999999986 599999843 111111111 10 011123322 23 235889999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
++|.. .....+..+.+..|+.-...+++...+.+. .+|.+++
T Consensus 79 tag~p--~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 79 TAGVP--RKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred ecCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99853 222234467788999999999998887753 6777775
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.1e-05 Score=75.09 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=62.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCC-C-eEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARG-D-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g-~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|+|.|| |++|+.+++.|++++ + +|++.+|+..... .+...+...++..+..|+.+. .+.++|+|||++++.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999 999999999999997 4 8999998543221 222222456888899888764 567899999999752
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
....++++|.+.|+++|-+|
T Consensus 79 ------------------~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 ------------------FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp ------------------GHHHHHHHHHHHT-EEEESS
T ss_pred ------------------hhHHHHHHHHHhCCCeeccc
Confidence 12368889999988877744
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=69.32 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
+++|+|.||||++|+.+++.|.+++| ++..+.+..... +.+. +. ..++...|.....+.++|+||.+++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g-~~l~--~~--g~~i~v~d~~~~~~~~vDvVf~A~g~-- 73 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG-KELS--FK--GKELKVEDLTTFDFSGVDIALFSAGG-- 73 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC-Ceee--eC--CceeEEeeCCHHHHcCCCEEEECCCh--
Confidence 46899999999999999999999887 457776642211 1111 11 22344445554455789999987652
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
.-+..++....+.|+++|=.|+..-+
T Consensus 74 ----------------g~s~~~~~~~~~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 74 ----------------SVSKKYAPKAAAAGAVVIDNSSAFRM 99 (334)
T ss_pred ----------------HHHHHHHHHHHhCCCEEEECCchhhc
Confidence 12334555666678877777775433
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0004 Score=57.44 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=58.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc----CCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
||.|+||||++|+.+++.|.+..+ +++.+..........+.... ...++.+.+ .....+.++|+||.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dvvf~a~~--- 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADPEELSDVDVVFLALP--- 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSGHHHTTESEEEE-SC---
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cchhHhhcCCEEEecCc---
Confidence 699999999999999999999643 55554443221222222111 112233333 33345688999999864
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
-.....+...+.+.|+++|=.|+..-
T Consensus 76 ---------------~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 76 ---------------HGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp ---------------HHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred ---------------hhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 12234566677788888887777553
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00087 Score=64.68 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=76.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCC-CceeEEe--c-cccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGN-PNFELIR--H-DVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~--~-D~~~~~~~~~d~Vih~A~~ 190 (442)
|+|.|+|++|.+|+.++..|+..| .+++++|.. .......+.... ....+.. . |-..+.++++|+||-+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 589999999999999999999887 489999876 111111111111 1223332 2 1123678899999999996
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
. .....+..+.++.|..-...+++..++.+. .+|.+|-
T Consensus 79 ~--~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 79 P--RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3 223345778899999999999999998874 5666663
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00057 Score=67.94 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccC-CCceeEE-eccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFG-NPNFELI-RHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~-~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.++|+|.|.||||++|+.|++.|.++ +++|..+.+..... +.+..... ....+.. ..++....+.++|+||-+.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 35679999999999999999999999 56999988743221 11111100 0001111 112222235789999986641
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
....+++..+ +.|+++|-.|+...+.+
T Consensus 115 ------------------~~s~~i~~~~-~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 115 ------------------GTTQEIIKAL-PKDLKIVDLSADFRLRD 141 (381)
T ss_pred ------------------HHHHHHHHHH-hCCCEEEEcCchhccCC
Confidence 1455666665 46789999999876543
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00081 Score=65.30 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccC----CCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.++||.|+|+ |.+|..++..|+..|. ++..+|++.........+... ...+.+...| .+.+.++|+||.+|
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~--~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD--YSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC--HHHhCCCCEEEEec
Confidence 4569999998 9999999999999886 899999854432222111111 0234444333 24588999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
|.. .....+..+.+..|....+.+++.+++.+. .+|.+|
T Consensus 82 g~~--~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 82 GAP--QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 863 222345678889999999999999988774 666666
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.9e-05 Score=66.85 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccc-----cccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVE-----PLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~-----~~~~~~d~Vih~A 188 (442)
++++++|+||+|.+|+.+++.|.+.|++|+++.|+... .+.+...+. .....+...|..+ ..+.++|+||++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLER-AQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence 45689999999999999999999999999999886422 112211111 1122233333322 4567899999976
Q ss_pred c
Q 013467 189 C 189 (442)
Q Consensus 189 ~ 189 (442)
.
T Consensus 106 ~ 106 (194)
T cd01078 106 A 106 (194)
T ss_pred C
Confidence 4
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=64.15 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=98.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCC--CccccccccC-----CCceeEEeccccccccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTG--RKENVMHHFG-----NPNFELIRHDVVEPLLLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~--~~~~~~~~~~-----~~~v~~~~~D~~~~~~~~~ 181 (442)
+.+|.|+|++|++|+.++..|+..|. +++.+|+.... ......+... ...+.+. .+ ..+.+.++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~-~~~~~~da 80 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TD-PEEAFKDV 80 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cC-hHHHhCCC
Confidence 45899999999999999999998873 78888875311 1111111110 0122222 11 23568899
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC---eEEEeecC---ccccCCCCCCCCCCCCCCCC-CCC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTS---EVYGDPLQHPQKETYWGNVN-PIG 254 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~---r~i~iSS~---~vy~~~~~~~~~E~~~~~~~-~~~ 254 (442)
|+||.+||.. .....+..+.+..|..-.+.+.+.+++.+. .+|.+|-- -+|-- -+. . .+.
T Consensus 81 DvVVitAG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~-----s~g~p 147 (323)
T TIGR01759 81 DAALLVGAFP--RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA------SKN-----APDIP 147 (323)
T ss_pred CEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH------HHH-----cCCCC
Confidence 9999999963 223446778899999999999999988763 56666520 01100 000 0 111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
+....|.+.+..-++-...++..+++...++-.+|+|..
T Consensus 148 ~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 186 (323)
T TIGR01759 148 PKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH 186 (323)
T ss_pred HHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecC
Confidence 111223244444455555566678888888777788853
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00058 Score=66.70 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
+|++|.|+||||++|+.+++.|.+++| ++..+... ....+.+. +....+++.+.|.. .+.++|+|+-+.+.
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~--~~~~~l~~~~~~~~--~~~~vD~vFla~p~- 76 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP--FAGKNLRVREVDSF--DFSQVQLAFFAAGA- 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec--cCCcceEEeeCChH--HhcCCCEEEEcCCH-
Confidence 457999999999999999999998877 33344322 11111111 11123444444332 35789999986631
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCC---CC---CCCCCCCChhHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYW---GN---VNPIGVRSCYDEGKRT 265 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~---~~---~~~~~~~~~Y~~sK~~ 265 (442)
.-...++..+.+.|+++|=.|+..-+. .....+.|--. .. ..-+...++|...-..
T Consensus 77 -----------------~~s~~~v~~~~~~G~~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~t~~~l 138 (336)
T PRK05671 77 -----------------AVSRSFAEKARAAGCSVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVSSPSASAVALAV 138 (336)
T ss_pred -----------------HHHHHHHHHHHHCCCeEEECchhhcCC-CCCEEecccCHHHHccccCCCEEECCCcHHHHHHH
Confidence 112347777888898999888876542 11112222100 00 1223334788776665
Q ss_pred HHHHHHHHHhhcCCc-EEEEeeCceeCCCC
Q 013467 266 AETLTMDYHRGAGVE-VRIARIFNTYGPRM 294 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~-~~iiRp~~v~G~~~ 294 (442)
+-.-+... .+++ +++--..-+-|.|.
T Consensus 139 aL~PL~~~---~~~~~v~v~t~~~vSGaG~ 165 (336)
T PRK05671 139 ALAPLKGL---LDIQRVQVTACLAVSSLGR 165 (336)
T ss_pred HHHHHHHh---cCCCEEEEEEeecCcccCc
Confidence 55544432 2333 33333334555543
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0066 Score=54.83 Aligned_cols=208 Identities=11% Similarity=0.056 Sum_probs=117.3
Q ss_pred CCCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC-CceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~------------~~ 178 (442)
+.+|++||+|- +-.|+..|++.|.+.|.++...+... .-.+.+.+.... ...-++.+|+.+. ..
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~ 82 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKW 82 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhh
Confidence 56789999985 46789999999999999988887643 112222222111 1234688888664 22
Q ss_pred CCCCEEEEecccCCCCcccCChh--------HHHHHhHHHHHHHHHHHHHc---CCeEEEee---cCccccCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYKFNPV--------KTIKTNVVGTLNMLGLAKRV---GARFLLTS---TSEVYGDPLQHPQKE 244 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~~~~--------~~~~~nv~gt~~ll~~a~~~---g~r~i~iS---S~~vy~~~~~~~~~E 244 (442)
.+.|.|+|+.|.........++. ...++...+...++++|+.. |..+|.+| |.-
T Consensus 83 g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r------------ 150 (259)
T COG0623 83 GKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER------------ 150 (259)
T ss_pred CcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee------------
Confidence 35999999999765332222222 12223333344444544431 32344333 322
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC--chHHHHHHHHHcCCCcEEec
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 319 (442)
.....+.-+..|+..|.-++.++.+. |+++..|--|.|= ..... ..+..++...-..-
T Consensus 151 -------~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIr----TLAasgI~~f~~~l~~~e~~a------ 213 (259)
T COG0623 151 -------VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIR----TLAASGIGDFRKMLKENEANA------ 213 (259)
T ss_pred -------ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchH----HHHhhccccHHHHHHHHHhhC------
Confidence 22234678999999999999888765 6666666654321 10000 01222222211111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCCC---c-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEHV---G-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~~---g-~~~i~~~ 354 (442)
..+.-+..+||...-++++.+-.. | +.++.+|
T Consensus 214 ---Pl~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G 249 (259)
T COG0623 214 ---PLRRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSG 249 (259)
T ss_pred ---CccCCCCHHHhhhhHHHHhcchhcccccceEEEcCC
Confidence 223445688998888888766443 4 5555544
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=71.01 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-C-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-G-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
.++++|+||||+|+||+.++++|.++ | .+++++.|... +...+...+.. .++. | .+..+.++|+|||+++..
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~-rl~~La~el~~--~~i~--~-l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE-RLQELQAELGG--GKIL--S-LEEALPEADIVVWVASMP 226 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH-HHHHHHHHhcc--ccHH--h-HHHHHccCCEEEECCcCC
Confidence 45679999999999999999999865 5 58888887532 22222221111 1111 1 235677899999999853
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=71.64 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
++++|+|+|+.+ +|..+++.|+++|++|++.++.....-+.....+...++.++..|..+....++|+||+++|.
T Consensus 4 ~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 467999999877 999999999999999999988532211111122223356778888777767789999999874
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00069 Score=56.33 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=57.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHh-CCCeEEE-EeCCCCCC-ccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIA-RGDSVIV-VDNFFTGR-KENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~-~g~~V~~-l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
|+|+|.|++|-+|+.+++.+.+ .++++.. ++|..... .+............+.-.+-.+..+..+|+||.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT----- 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT----- 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-----
Confidence 5899999999999999999999 5777654 45543111 11121111111222222244455666699999863
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
+-..+...++.|.++|+.+|.-+|
T Consensus 76 -------------~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 76 -------------NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp --------------HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred -------------ChHHhHHHHHHHHhCCCCEEEECC
Confidence 345566788999999987765444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=64.18 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=75.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccc---c--CCCceeEEeccccccccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHH---F--GNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~---~--~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+|.|.|+ |.+|+.++..|+..| ++|+++++..........+. . ......+...+. ..+.++|+||+++|.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~--~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY--SDCKDADIVVITAGA 78 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH--HHhCCCCEEEEccCC
Confidence 7999995 999999999999998 68999998654332211111 0 012223332222 346899999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
.. ....+..+.+..|..-.+.+.+..++.+. .+|.+|-
T Consensus 79 ~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 79 PQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 32 22345677889999999999999998874 6776663
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00047 Score=68.89 Aligned_cols=69 Identities=25% Similarity=0.276 Sum_probs=49.4
Q ss_pred CCCCEEEEEcC----------------CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc--
Q 013467 114 RKGLRIVVTGG----------------AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-- 175 (442)
Q Consensus 114 ~~~~~vlVtGa----------------tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-- 175 (442)
.++++|+|||| +|.+|.+++++|.++|++|+++++..... . ...+.. .|+.+
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~---~-----~~~~~~--~dv~~~~ 255 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP---T-----PAGVKR--IDVESAQ 255 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc---C-----CCCcEE--EccCCHH
Confidence 56789999999 89999999999999999999998754211 0 011222 22222
Q ss_pred -------cccCCCCEEEEecccCC
Q 013467 176 -------PLLLEVDQIYHLACPAS 192 (442)
Q Consensus 176 -------~~~~~~d~Vih~A~~~~ 192 (442)
..+.++|++||+||+..
T Consensus 256 ~~~~~v~~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 256 EMLDAVLAALPQADIFIMAAAVAD 279 (399)
T ss_pred HHHHHHHHhcCCCCEEEEcccccc
Confidence 23456999999999754
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=65.62 Aligned_cols=162 Identities=9% Similarity=0.050 Sum_probs=100.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-------CC--eEEEEeCCCCCCccccccccCC-----CceeEEeccccccccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-------GD--SVIVVDNFFTGRKENVMHHFGN-----PNFELIRHDVVEPLLLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-------g~--~V~~l~r~~~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~ 181 (442)
+-+|.|+|++|.||.+++..|+.. |. +++.+++..+.......+..+. .++.+... ..+.++++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~--~ye~~kda 177 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID--PYEVFQDA 177 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC--CHHHhCcC
Confidence 458999999999999999999988 54 7888887654433222221111 12322222 23578899
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHH-cCC--eEEEeecC---ccc--cCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR-VGA--RFLLTSTS---EVY--GDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~-~g~--r~i~iSS~---~vy--~~~~~~~~~E~~~~~~~~~ 253 (442)
|+||-+||.. .....+..+.++.|..-.+.+.+..++ ++. .+|.+|-- ..| -...+.+ +
T Consensus 178 DiVVitAG~p--rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~----------~- 244 (444)
T PLN00112 178 EWALLIGAKP--RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNI----------P- 244 (444)
T ss_pred CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCC----------C-
Confidence 9999999863 223446778899999999999999999 564 67777631 011 0000000 0
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
....=..+.+..-++-...+++.+++...|+-.+|+|..
T Consensus 245 -~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH 283 (444)
T PLN00112 245 -AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 283 (444)
T ss_pred -cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecC
Confidence 001111222333344444556678888888777888863
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=64.45 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
..++|.|.||||++|+.|++.|.+++| ++..+..... ..+.. .. . ..++...++....+.++|+||-+++.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs-aGk~~-~~-~--~~~~~v~~~~~~~~~~~D~vf~a~p~- 79 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS-AGKKV-TF-E--GRDYTVEELTEDSFDGVDIALFSAGG- 79 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC-CCCee-ee-c--CceeEEEeCCHHHHcCCCEEEECCCc-
Confidence 346899999999999999999999887 3444432211 11111 11 1 12333333333456789999977642
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
.....++..+.+.|+++|=.|+..-+.+
T Consensus 80 -----------------~~s~~~~~~~~~~g~~VIDlS~~fR~~~ 107 (344)
T PLN02383 80 -----------------SISKKFGPIAVDKGAVVVDNSSAFRMEE 107 (344)
T ss_pred -----------------HHHHHHHHHHHhCCCEEEECCchhhcCC
Confidence 1233455556667889998888765543
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0034 Score=60.67 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=74.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCC-CceeEEe--cc-ccccccCCCCEEEEecccC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGN-PNFELIR--HD-VVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~--~D-~~~~~~~~~d~Vih~A~~~ 191 (442)
||.|+|++|.||+.++..|+.++. +++++|+.. ......+.... ....+.. .| -..+.+.++|+||-+||..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 589999999999999999998875 788998864 11111111111 1223332 11 1245789999999999963
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. ....+..+.+..|..-.+.+.+..++.+. .+|.+|
T Consensus 79 ~--~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 79 R--KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred C--CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 2 22345677889999999999999988874 566666
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0027 Score=60.84 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=74.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccc---cccccC--CCceeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKEN---VMHHFG--NPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~---~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
+||.|+|+ |.||+.++..|+.++ .+++++++.....+.. +.+... .....+.. |-..+.+.++|+|+-+||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCChhhhcCCCEEEEeCC
Confidence 48999999 999999999998875 4899999872222211 111111 11222222 222467889999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. ........+.++.|..-...+.+...+.+. .|+.+|
T Consensus 79 ~p--rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 79 VP--RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CC--CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 53 333456778899999999999999998885 455555
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00037 Score=58.89 Aligned_cols=75 Identities=28% Similarity=0.379 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.++++++|.|+ |..|+.++..|.+.|.+ |+++.|+.. +.+.+...+....+.++..+-....+.++|+||++.+.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~-ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE-RAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH-HHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 34569999996 99999999999999975 999988532 33344444444567777777766778889999998764
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00064 Score=62.78 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=44.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-------ccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-------LLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-------~~~~~d~Vih~A~~ 190 (442)
|++=-.++|+||.+++++|+++|++|+++++..... . .....+++.+.+..+. .+.++|++||+||.
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~-----~-~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv 90 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALK-----P-EPHPNLSIREIETTKDLLITLKELVQEHDILIHSMAV 90 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcc-----c-ccCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEe
Confidence 444446699999999999999999999987531110 0 0112345544332222 23468999999996
Q ss_pred CC
Q 013467 191 AS 192 (442)
Q Consensus 191 ~~ 192 (442)
..
T Consensus 91 ~d 92 (227)
T TIGR02114 91 SD 92 (227)
T ss_pred cc
Confidence 43
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.005 Score=59.99 Aligned_cols=163 Identities=11% Similarity=0.042 Sum_probs=97.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCC--Cccc---ccccc-C-CCceeEEeccccccccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTG--RKEN---VMHHF-G-NPNFELIRHDVVEPLLLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~--~~~~---~~~~~-~-~~~v~~~~~D~~~~~~~~ 180 (442)
++++|.|+|++|.+|+.++..|+..|. ++..+|+.... .... +.+.. . ...+.+.. -..+.+.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~y~~~~d 80 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD--DPNVAFKD 80 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec--ChHHHhCC
Confidence 456999999999999999999988763 78888874321 1111 11111 0 01233332 22356889
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecC---ccccCCCCCCCCCCCCCCCC-CC
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTS---EVYGDPLQHPQKETYWGNVN-PI 253 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~---~vy~~~~~~~~~E~~~~~~~-~~ 253 (442)
+|+||-+||.. .....+..+.+..|..-.+.+.+..++.. +.+|.+|-- -+|--. +. . .+
T Consensus 81 aDiVVitaG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~------k~-----s~g~ 147 (326)
T PRK05442 81 ADVALLVGARP--RGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAM------KN-----APDL 147 (326)
T ss_pred CCEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHH------HH-----cCCC
Confidence 99999999853 22344677889999999999999998843 267766631 011000 00 0 00
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCC
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~ 292 (442)
.+....|.+-+..-++-...++..+++...|+...|+|.
T Consensus 148 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~Ge 186 (326)
T PRK05442 148 PAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGN 186 (326)
T ss_pred CHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEEC
Confidence 011122223344444445555666788777776566775
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00032 Score=69.83 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCCCEEEEEcC----------------CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccc-c-
Q 013467 114 RKGLRIVVTGG----------------AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV-E- 175 (442)
Q Consensus 114 ~~~~~vlVtGa----------------tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~- 175 (442)
.++++|+|||| +|.+|..++++|.++|++|+++.+..... ... ....+++...+-. +
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~---~~~--~~~~~~v~~~~~~~~~ 257 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL---TPP--GVKSIKVSTAEEMLEA 257 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC---CCC--CcEEEEeccHHHHHHH
Confidence 56789999998 46799999999999999999988643221 100 0112233222111 2
Q ss_pred ---cccCCCCEEEEecccCCCCcccCC------hhHHHHHhHHHHHHHHHHHHHcC
Q 013467 176 ---PLLLEVDQIYHLACPASPVHYKFN------PVKTIKTNVVGTLNMLGLAKRVG 222 (442)
Q Consensus 176 ---~~~~~~d~Vih~A~~~~~~~~~~~------~~~~~~~nv~gt~~ll~~a~~~g 222 (442)
....++|++||+||.......... ....+..|+.-+-.++...++..
T Consensus 258 ~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 258 ALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred HHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 223468999999998644322111 11223456666777787776543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=64.10 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=57.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEE---EEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVI---VVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~---~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
+|+|.||||++|+.|++.|.+++|.++ .+.+.... .+.+. + ...+....|+....+.++|+||-+++..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~-g~~~~--~--~~~~~~~~~~~~~~~~~~D~v~~a~g~~--- 72 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA-GRKVT--F--KGKELEVNEAKIESFEGIDIALFSAGGS--- 72 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC-CCeee--e--CCeeEEEEeCChHHhcCCCEEEECCCHH---
Confidence 489999999999999999999888543 44343211 11111 1 1234444444445567899999887621
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
-+..++..+.+.|+++|=.|+..
T Consensus 73 ---------------~s~~~a~~~~~~G~~VID~ss~~ 95 (339)
T TIGR01296 73 ---------------VSKEFAPKAAKCGAIVIDNTSAF 95 (339)
T ss_pred ---------------HHHHHHHHHHHCCCEEEECCHHH
Confidence 23344555666787777667644
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0044 Score=61.16 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=57.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc--------CC--CceeEEeccccccccCCCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF--------GN--PNFELIRHDVVEPLLLEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~--------~~--~~v~~~~~D~~~~~~~~~d~V 184 (442)
+++|+|+||||++|+.+++.|.+... +++.+.++.....+...... .. ..+.+...|. ..+.++|+|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~DvV 80 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVDIV 80 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCCEE
Confidence 46999999999999999999998765 88887554322222221110 00 1122222222 223579999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
+-+... + ....+++.+.+.|+++|-.|+..
T Consensus 81 f~a~p~----------------~--~s~~~~~~~~~~G~~vIDls~~f 110 (349)
T PRK08664 81 FSALPS----------------D--VAGEVEEEFAKAGKPVFSNASAH 110 (349)
T ss_pred EEeCCh----------------h--HHHHHHHHHHHCCCEEEECCchh
Confidence 876431 1 12345567777888777777644
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=62.93 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccc---cCCC-ceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHH---FGNP-NFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~---~~~~-~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|++|+|+||||++|+.+++.|.+. +++++.+.+... ..+..... +... ...+.+.|. ....++|+|+-+...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDP--EILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCH--HHhcCCCEEEECCCc
Confidence 579999999999999999999987 568877765321 21111111 1100 112222222 244679999986531
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
.....++..+.++|+++|=.|+..-+
T Consensus 79 ------------------~~~~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 79 ------------------GVSMDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred ------------------HHHHHHHHHHHhCCCEEEECCcccCC
Confidence 12345666677788899999987655
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=63.10 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=69.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc--------------------ccccccc----CCCcee
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK--------------------ENVMHHF----GNPNFE 167 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~--------------------~~~~~~~----~~~~v~ 167 (442)
+.+..+|+|.|+ |+||++++..|.+.|. +|+++|.+.-... +.....+ ..-.++
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 345568999996 9999999999999997 8999987531100 0000011 112334
Q ss_pred EEeccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 168 LIRHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 168 ~~~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
.+..++.. +.+.++|+||.+. .|...-..+-++|.+.++.+|+.++.+.||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-----------------Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~ 155 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIIDAT-----------------DNFETRFIVNDAAQKYGIPWIYGACVGSYGL 155 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEEcC-----------------CCHHHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence 44444433 3466789999874 2333334577889999999999988777663
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=62.60 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=67.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc------------------------cccccccCCCcee
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK------------------------ENVMHHFGNPNFE 167 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~------------------------~~~~~~~~~~~v~ 167 (442)
..+.++|+|.|+ |.+|+++++.|.+.|. +++++|++.-... +.+......-.++
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 345568999995 8899999999999997 8888887631100 0000111122344
Q ss_pred EEecccc----ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 168 LIRHDVV----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 168 ~~~~D~~----~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
.+..|+. +..+.++|+||.+.. |...-..+-++|.+.++.+|+.+..+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D-----------------~~~~r~~in~~~~~~~ip~i~~~~~g~~G 154 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATD-----------------NFDTRLLINDLSQKYNIPWIYGGCVGSYG 154 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 4544543 235667999998652 22222345678889999999988777665
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00033 Score=66.83 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=52.4
Q ss_pred EEEEEcCCchhHHHHHHHHHh----CCCeEEEEeCCCCCCcccccccc-----CCCceeEEecccccc-----ccCCCCE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIA----RGDSVIVVDNFFTGRKENVMHHF-----GNPNFELIRHDVVEP-----LLLEVDQ 183 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~----~g~~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~-----~~~~~d~ 183 (442)
-++|.||+||-|.++++++++ .|...-+..|+...-.+.+.... ...+.-++-+|..++ ..+.+.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v 86 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV 86 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence 489999999999999999999 67788888886543332222111 112223677787554 4567999
Q ss_pred EEEecccCC
Q 013467 184 IYHLACPAS 192 (442)
Q Consensus 184 Vih~A~~~~ 192 (442)
|+||+|+..
T Consensus 87 ivN~vGPyR 95 (423)
T KOG2733|consen 87 IVNCVGPYR 95 (423)
T ss_pred EEeccccce
Confidence 999999754
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0066 Score=59.76 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=58.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccC------C----CceeEEeccccccccCCCCEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFG------N----PNFELIRHDVVEPLLLEVDQIY 185 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~------~----~~v~~~~~D~~~~~~~~~d~Vi 185 (442)
++|.|+|++|++|+++++.|.+++ .+|..+................ . ..+.+.. .....+.++|+|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVE--PEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEe--CCHHHhccCCEEE
Confidence 479999999999999999998876 5887774432222111111100 0 1111111 2222346799999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
-+.. .++ +..+...+.+.|+++|..|+..-+.
T Consensus 79 ~a~p----------------~~~--s~~~~~~~~~~G~~VIDlsg~fR~~ 110 (341)
T TIGR00978 79 SALP----------------SEV--AEEVEPKLAEAGKPVFSNASNHRMD 110 (341)
T ss_pred EeCC----------------HHH--HHHHHHHHHHCCCEEEECChhhccC
Confidence 8764 111 2234466677888888888876543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0026 Score=56.63 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=38.0
Q ss_pred cCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-------cccCCCCEEEEecccCC
Q 013467 123 GGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-------PLLLEVDQIYHLACPAS 192 (442)
Q Consensus 123 GatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-------~~~~~~d~Vih~A~~~~ 192 (442)
-.||-.|..|++++..+|++|+.+....... ....+..++.+-.+ ..+..+|++||+|++..
T Consensus 26 ~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--------~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 26 RSSGKMGAALAEEAARRGAEVTLIHGPSSLP--------PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp S--SHHHHHHHHHHHHTT-EEEEEE-TTS------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEecCcccc--------ccccceEEEecchhhhhhhhccccCcceeEEEecchhh
Confidence 4589999999999999999999998642111 12355666654333 24456899999999754
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0092 Score=50.80 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=63.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc------------------c----cCCCceeEEecccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH------------------H----FGNPNFELIRHDVV 174 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~------------------~----~~~~~v~~~~~D~~ 174 (442)
+|+|.|+ |.+|+++++.|.+.|. +++++|...-......++ . ...-+++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4899995 9999999999999997 788887642111100000 0 01122333433333
Q ss_pred c----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 175 E----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 175 ~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
+ ..+.++|+||.+.. |......+.+.|++.++.||..++.+.+
T Consensus 80 ~~~~~~~~~~~diVi~~~d-----------------~~~~~~~l~~~~~~~~i~~i~~~~~g~~ 126 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAID-----------------NIAVRRALNRACKELGIPVIDAGGLGLG 126 (143)
T ss_pred hhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCCCcE
Confidence 2 34567999998752 2344556778999999889988876543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0078 Score=58.35 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=71.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc---ccC--CCceeEEe-ccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH---HFG--NPNFELIR-HDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~---~~~--~~~v~~~~-~D~~~~~~~~~d~Vih~A 188 (442)
||+|.|+|+ |.+|..++..|+..|. +|+++|+..+.......+ ... .....+.. .|. ..+.++|+||.++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence 579999998 9999999999998875 999999854432221111 110 11122322 233 3578999999998
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+... .......+.+..|+.-...+++...+... .+|.+|
T Consensus 79 ~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 79 GVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7532 22234456667888888888888877763 466665
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0083 Score=58.14 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=74.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccc---cccCC-CceeEEe-ccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVM---HHFGN-PNFELIR-HDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~---~~~~~-~~v~~~~-~D~~~~~~~~~d~Vih~A~ 189 (442)
+||.|+|+ |.||..++..|+..|. +++++|........... +.... ....+.. .|.. .+.++|+||.+||
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCC
Confidence 48999996 9999999999988874 78999875432221111 11100 1123343 3433 4789999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
... ....+..+.+..|..-.+.+.+..++.+. .+|.+|-
T Consensus 81 ~~~--k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 81 ARQ--NEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 632 22345667889999999999999998874 6776663
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.01 Score=57.45 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=74.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccc---cccC---CCceeEEeccccccccCCCCEEEEecc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVM---HHFG---NPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~---~~~~---~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
||.|.|+ |.||+.++..|+.++. +++++|........... +... ...+.+...| -+.+.++|+||-+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence 4889997 9999999999998874 79999875432222211 2111 1234454443 357889999999998
Q ss_pred cCCCCcccCC--hhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFN--PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~--~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.... .... ..+.+..|..-.+.+.+..++.+. .+|.+|
T Consensus 78 ~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 78 PSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 6321 1222 477889999999999999999885 455555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0063 Score=57.37 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=52.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
+++|.|+|++|.+|+.+++.+.+. +.++..++.....+.... . ...+...+-.+..+.++|+||.+..+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~--~~~i~~~~dl~~ll~~~DvVid~t~p---- 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----G--ALGVAITDDLEAVLADADVLIDFTTP---- 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----C--CCCccccCCHHHhccCCCEEEECCCH----
Confidence 468999999999999999988875 577776543222221111 1 11221112223344579999987632
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
+ ....++..|.++|+.+|
T Consensus 71 ------------~--~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 71 ------------E--ATLENLEFALEHGKPLV 88 (257)
T ss_pred ------------H--HHHHHHHHHHHcCCCEE
Confidence 1 12346667777777655
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=57.19 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=73.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccc---ccccc-CCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKEN---VMHHF-GNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~---~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|+|.|.|+ |.+|..++..|+.+| ++|.+++++....... +.+.. -.....+...|. +.+.++|+||.+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence 58999997 999999999999999 5899999864322211 11110 001223333343 457899999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. .....+..+....|+.-...+++..++.+. .++.++
T Consensus 78 ~--~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 78 N--QKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3 222345667788999999999998888764 455554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0073 Score=50.89 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=64.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc----------------------CCCceeEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF----------------------GNPNFELIRHDV 173 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~----------------------~~~~v~~~~~D~ 173 (442)
++|+|.| .|.+|+.+++.|...|. +++++|...-.......+.+ ...++..+..++
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 4899999 59999999999999997 78888865321111111100 112334444444
Q ss_pred c----ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 174 V----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 174 ~----~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
. +..+.++|+||.+.. +...-..+.+.|++.++.+|+.+..+.+|
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g~~G 130 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVD-----------------SLAARLLLNEICREYGIPFIDAGVNGFYG 130 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESS-----------------SHHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred ccccccccccCCCEEEEecC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 2 234557999998752 23344457789999999999888766554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.016 Score=56.53 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=73.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccc---cccC--CCceeEEeccccccccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVM---HHFG--NPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~---~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.++|.|+|| |.+|..++..|+..| .+|+.+|++.+....... +... .....+...+-. +.+.++|+||.++|
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence 458999997 999999999998888 689999886433221111 1101 112233321212 37789999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
... .......+.+..|..-...+++.+.+... .+|++|-
T Consensus 83 ~~~--~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 83 VQR--KEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 532 22334567788899888888888888764 4676664
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0055 Score=60.35 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=60.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC-CCeEEEE-eCCCCCCccccccccC---CC-ceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVV-DNFFTGRKENVMHHFG---NP-NFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l-~r~~~~~~~~~~~~~~---~~-~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|+|.|.||||++|+.+++.|.+. +.+++.+ ++.. ...+....... .. ...+...|.. ..+.++|+||-+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~-sagk~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE-SAGKPVSEVHPHLRGLVDLNLEPIDEE-EIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch-hcCCChHHhCccccccCCceeecCCHH-HhhcCCCEEEECCCc
Confidence 48999999999999999999987 4677754 4322 11111111111 10 1223323322 233479999987641
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
.....++..+.+.|+++|=.|+..-+.
T Consensus 79 ------------------~~s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 79 ------------------GVSAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred ------------------hHHHHHHHHHHhCCCEEEeCChhhhcC
Confidence 133456777777888999999876543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0085 Score=59.47 Aligned_cols=162 Identities=9% Similarity=0.057 Sum_probs=93.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-e----EEE--E--eCCCCCCccccccccCC-----CceeEEeccccccccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-S----VIV--V--DNFFTGRKENVMHHFGN-----PNFELIRHDVVEPLLLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~----V~~--l--~r~~~~~~~~~~~~~~~-----~~v~~~~~D~~~~~~~~~ 181 (442)
+.+|.|+|++|.+|.+++..|+..|. . |.+ + ++..+.......+..+. ..+.+... ....++++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~--~y~~~kda 121 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID--PYEVFEDA 121 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC--CHHHhCCC
Confidence 45899999999999999999998873 2 333 2 44332222111111110 12222222 23578899
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeecC---ccc--cCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTS---EVY--GDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS~---~vy--~~~~~~~~~E~~~~~~~~~ 253 (442)
|+||-+||.. .....+..+.+..|..-.+.+....++.. . ++|.+|-- .+| -...+. .+
T Consensus 122 DIVVitAG~p--rkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~----------~~- 188 (387)
T TIGR01757 122 DWALLIGAKP--RGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPN----------IP- 188 (387)
T ss_pred CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCC----------Cc-
Confidence 9999999863 22334677889999999999999998843 3 67766631 011 000000 00
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
....=..+.+..-++-...+++.+++..-|+-.+|+|..
T Consensus 189 -~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH 227 (387)
T TIGR01757 189 -RKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH 227 (387)
T ss_pred -ccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence 000111222333444444556667777777767788853
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.014 Score=57.36 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=74.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccc---cccC-CCceeEEe-ccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVM---HHFG-NPNFELIR-HDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~---~~~~-~~~v~~~~-~D~~~~~~~~~d~Vih~A~ 189 (442)
++|.|+|+ |.||+.++..|+..+. ++..+|........... +... .....+.. .|. +.+.++|+||-+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy--~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY--AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH--HHhCCCCEEEECCC
Confidence 69999996 9999999999998874 79999885432222111 1110 01233332 232 34789999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
... ....+..+.+..|+.-.+.+.+..++.+. .+|.+|
T Consensus 115 ~~~--k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 115 ARQ--IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 632 22345667888999999999999988874 677666
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0051 Score=62.94 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC-CCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL-EVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~Vih~A~~ 190 (442)
.+++|+|+|+.| +|..+++.|++.|++|++.++........ ...+...++.+..+......+. ++|.||++.|.
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi 78 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPE-AQELLEEGIKVICGSHPLELLDEDFDLMVKNPGI 78 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhH-HHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCC
Confidence 456899999977 99999999999999999998754222211 1112223445544332222233 48999999885
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.024 Score=55.23 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc---cc--cCCCceeEEe-ccccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM---HH--FGNPNFELIR-HDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~---~~--~~~~~v~~~~-~D~~~~~~~~~d~Vih~ 187 (442)
+.+||.|.| .|.+|..++..|+..|. +|+++|++......... +. .......+.. .|. +.+.++|+||.+
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~t 81 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVT 81 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEEC
Confidence 346899999 59999999999999995 89999886543211111 11 1112233442 343 467899999999
Q ss_pred cccCCCCcc---cCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 188 ACPASPVHY---KFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 188 A~~~~~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
++....... +.+..+.+..|+.-...+++.+.+.+. .+|.+|-
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 986432111 114566778898888888888888764 5666663
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0098 Score=58.07 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
+.++|.|.||||++|..+++.|.++.| ++..+..... ..+... +....+.+. ++.+..+.++|+|+.+++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-aG~~~~--~~~~~~~v~--~~~~~~~~~~Dvvf~a~p~- 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-AGETLR--FGGKSVTVQ--DAAEFDWSQAQLAFFVAGR- 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-CCceEE--ECCcceEEE--eCchhhccCCCEEEECCCH-
Confidence 346899999999999999999998654 6666643211 111111 122223333 3333344689999987641
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
.....++..+.+.|+++|=.|+..-+.
T Consensus 77 -----------------~~s~~~~~~~~~~g~~VIDlS~~fRl~ 103 (336)
T PRK08040 77 -----------------EASAAYAEEATNAGCLVIDSSGLFALE 103 (336)
T ss_pred -----------------HHHHHHHHHHHHCCCEEEECChHhcCC
Confidence 123456666667788999888876554
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.02 Score=55.36 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=72.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccC-----CCceeEE-eccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFG-----NPNFELI-RHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~-~~D~~~~~~~~~d~Vih~A~ 189 (442)
|+|.|.|+ |++|..++..|+.+|+ +|+++++..........+... .....+. ..|.. .+.++|+||-++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence 48999996 9999999999999886 899999853322211111110 1111222 23433 2678999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
... ....+..+.+..|..-...+++...+.+. .+|.+|-
T Consensus 79 ~p~--~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 79 LPR--KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 532 22334556788999999999998887764 5666663
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.018 Score=54.45 Aligned_cols=109 Identities=17% Similarity=0.090 Sum_probs=73.9
Q ss_pred EEEEcCCchhHHHHHHHHHhCC----CeEEEEeCCCCCCccccc---cccCCC-ceeEEeccccccccCCCCEEEEeccc
Q 013467 119 IVVTGGAGFVGSHLVDRLIARG----DSVIVVDNFFTGRKENVM---HHFGNP-NFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g----~~V~~l~r~~~~~~~~~~---~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|.|+||+|.+|..++..|+..| .+|+.+|+.......... +..... ...+...+-..+.+.++|+||.+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 5799999999999999999998 699999986533221111 111111 23333333235678899999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
... ...........|+...+.+++..++... .+|.+|
T Consensus 81 ~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 81 GRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 332 2334556778899999999999988864 566654
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0052 Score=59.61 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|+| .|.+|..++..|+++|++|++.+|+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 5899999 79999999999999999999999864
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.019 Score=51.77 Aligned_cols=104 Identities=15% Similarity=0.297 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc------------------------cccccCCCceeEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN------------------------VMHHFGNPNFELI 169 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~------------------------~~~~~~~~~v~~~ 169 (442)
+..+|+|.|..| +|+++++.|...|. +++++|...-..... +.+.-...+++.+
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 345899999755 99999999999995 788888652211100 0000011223333
Q ss_pred ecccc------ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 170 RHDVV------EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 170 ~~D~~------~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
..++. +..+.++|+||.+. .+......+-+.|++.++.||+.++.+.||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~dvVi~~~-----------------d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATE-----------------ENYERTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred ecccccchhhHHHHHhCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 33332 12355788888653 1233334566889999999999998877763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.01 Score=49.63 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=62.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc---CCCCEEEEecccCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL---LEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~d~Vih~A~~~~ 192 (442)
+++|++.| .| -|..++..|.+.|++|+++|.+...-. ......++++..|+.++.+ .++|.|+-.=
T Consensus 17 ~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~-----~a~~~~~~~v~dDlf~p~~~~y~~a~liysir---- 85 (134)
T PRK04148 17 NKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVE-----KAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR---- 85 (134)
T ss_pred CCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHH-----HHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC----
Confidence 35899999 56 788999999999999999998643211 1122356888999988754 4788888542
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
.-.+-...+++.|++.++.++
T Consensus 86 -------------pp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 86 -------------PPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred -------------CCHHHHHHHHHHHHHcCCCEE
Confidence 223344578999999998544
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.014 Score=53.96 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc----------------------ccCCCceeEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH----------------------HFGNPNFELIR 170 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~----------------------~~~~~~v~~~~ 170 (442)
.+..+|+|.| .|.+|+++++.|...|. +++++|...-....-.+. .....+++.+.
T Consensus 19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 3455899999 69999999999999996 777776542111100000 00012334444
Q ss_pred ccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 171 HDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 171 ~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
.++.. +.+.++|+||.+.. |...-..+-+.|.+.++.+|+.+..+.+|
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~g~~g~~g 149 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTD-----------------NFATRYLINDACVKLGKPLVSGAVLGFEG 149 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 33322 34567999998753 22223456788899998899887766554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0012 Score=62.65 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=49.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC--CceeEEeccccccccCCCCEEEEecccCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN--PNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
.++|-|||||.|..++++|..+|..-....|+.. +-..+...+.. ..+.....+..++.+.+.++|+||+|+..
T Consensus 8 d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~-kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt 83 (382)
T COG3268 8 DIIIYGATGYAGGLVAEYLAREGLTAALAGRSSA-KLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYT 83 (382)
T ss_pred eEEEEccccchhHHHHHHHHHcCCchhhccCCHH-HHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence 6999999999999999999999987755555422 22222222211 11222223456667788999999999754
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0034 Score=56.19 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
||++.|.| +|-||+.+++.|.+.||+|++-.|+.+.+.+.....+... +.+--.+.+.+.+|+||-..
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~----i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL----ITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc----cccCChHHHHhcCCEEEEec
Confidence 45666665 8999999999999999999999776665544444332221 22323444667799999654
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.004 Score=59.81 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCC--CCccccccccC--CCceeEEeccccc-----cccCCCCE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFT--GRKENVMHHFG--NPNFELIRHDVVE-----PLLLEVDQ 183 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~--~~~~~~~~~~~--~~~v~~~~~D~~~-----~~~~~~d~ 183 (442)
.++++++|+|| |++|+.++..|.+.|.+ |++++|+.. .+.+.+...+. ...+.+...|+.+ ..+..+|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 34578999998 89999999999999985 999998642 22222222221 1223333344432 23456899
Q ss_pred EEEeccc
Q 013467 184 IYHLACP 190 (442)
Q Consensus 184 Vih~A~~ 190 (442)
|||+-..
T Consensus 203 lINaTp~ 209 (289)
T PRK12548 203 LVNATLV 209 (289)
T ss_pred EEEeCCC
Confidence 9998754
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=57.61 Aligned_cols=162 Identities=10% Similarity=0.035 Sum_probs=95.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC---CC----eEEEEeCCC-CCCcccc----cccc-C-CCceeEEeccccccccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR---GD----SVIVVDNFF-TGRKENV----MHHF-G-NPNFELIRHDVVEPLLLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~---g~----~V~~l~r~~-~~~~~~~----~~~~-~-~~~v~~~~~D~~~~~~~~~ 181 (442)
+.+|+||||+|.||-+|+-.++.- |. .++.++... ....+.. .+.. . ...+.+... ....+.++
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~--~~ea~~da 200 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTD--LDVAFKDA 200 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEEC--CHHHhCCC
Confidence 348999999999999999988763 42 345555521 1111111 0100 0 113444422 34678899
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCcc----c--cCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEV----Y--GDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~v----y--~~~~~~~~~E~~~~~~~~ 252 (442)
|+||-+||.. .....+..+.++.|..-...+.+...+.+ ++++.+.|--+ | -... ..
T Consensus 201 DvvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~a------------pg 266 (452)
T cd05295 201 HVIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYA------------PS 266 (452)
T ss_pred CEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHc------------CC
Confidence 9999999853 22344677889999999999999988776 35666654111 1 0000 01
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
+.+....|.+....-++....+++.|++...|+-.+|+|..
T Consensus 267 iP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH 307 (452)
T cd05295 267 IPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNI 307 (452)
T ss_pred CCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc
Confidence 11112223333444455555667778888888878888863
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.01 Score=53.74 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc------------------ccccc--CCC--ceeEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN------------------VMHHF--GNP--NFELIR 170 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~------------------~~~~~--~~~--~v~~~~ 170 (442)
....+|+|.| .|.+|+++++.|...|. +++++|.+.-....- ....+ -++ .++.+.
T Consensus 19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 4455899999 69999999999999996 899988752111000 00000 012 223333
Q ss_pred cccc----ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 171 HDVV----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 171 ~D~~----~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
..+. ++.+.++|+||.+.. |...-..+-+.|.+.++.||+.+..+.+|
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTD-----------------NFATRYLINDACVALGTPLISAAVVGFGG 149 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence 2332 234667999998652 22333346788899998999988766655
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.025 Score=52.94 Aligned_cols=105 Identities=20% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc------------------cc--CCC--ceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH------------------HF--GNP--NFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~------------------~~--~~~--~v~~~ 169 (442)
..+..+|+|.|+ |.+|+++++.|+..|. +++++|...-....-.+. .+ -++ .++.+
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 445668999997 9999999999999995 788887642211110000 00 012 23333
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+.+ ..+.++|+||.+.. |...-..+-++|.+.++.+|+.++.+.+|
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCTD-----------------NVATRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecCC-----------------CHHHHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 333322 24567999998752 22233356688889998888876655444
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=55.02 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=71.9
Q ss_pred EEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccc---cccCC-CceeEEeccccccccCCCCEEEEecccCC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVM---HHFGN-PNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~---~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
|.|.|+ |.+|..++..|+..| ++++++|+.......... +.... ....+...+- ...+.++|+||.++|..
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p- 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP- 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC-
Confidence 468885 899999999999988 689999986432221111 11111 1223332221 34788999999999853
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.....+..+.+..|+.-.+.+++..++.+. .+|.+|
T Consensus 78 -~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 78 -RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 222345677888999999999999988874 666666
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.019 Score=55.27 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=56.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCe---EEEEeCCCCCCccccc-cccCCCceeEEecc-ccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDS---VIVVDNFFTGRKENVM-HHFGNPNFELIRHD-VVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~---V~~l~r~~~~~~~~~~-~~~~~~~v~~~~~D-~~~~~~~~~d~Vih~A~~ 190 (442)
+++|.|.||||-+|+.+++.|.++... +.++-. .+..... ..+....+..-+ + .....+.++|+++.++|-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS---~rSaG~~~~~f~~~~~~v~~-~~~~~~~~~~~Divf~~ag~ 76 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLAS---ARSAGKKYIEFGGKSIGVPE-DAADEFVFSDVDIVFFAAGG 76 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEec---ccccCCccccccCccccCcc-ccccccccccCCEEEEeCch
Confidence 458999999999999999999997542 333321 1111111 111111111111 1 112234579999999862
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
. -+..+...+.++|+-+|=-||..-+.
T Consensus 77 ----------------~--~s~~~~p~~~~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 77 ----------------S--VSKEVEPKAAEAGCVVIDNSSAFRMD 103 (334)
T ss_pred ----------------H--HHHHHHHHHHHcCCEEEeCCcccccC
Confidence 1 12456778888886666555555543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.03 Score=50.52 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc----------------------cccccCCCceeEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN----------------------VMHHFGNPNFELIR 170 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~----------------------~~~~~~~~~v~~~~ 170 (442)
.+.++|+|.|+ |.+|+++++.|...|. +++++|...-..... +...-....++...
T Consensus 19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 34558999996 5599999999999996 788887542111000 00000111233333
Q ss_pred cccc---ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 171 HDVV---EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 171 ~D~~---~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
..+. +..+.++|+||.+.. |...-..+-+.|.+.++.||+.++.+.+|.
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATEL-----------------SRAELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred cCccccHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 3222 223567899987542 222334456889999999999998776653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.026 Score=55.23 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh-CCCe---EEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIA-RGDS---VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~-~g~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
.++|.|.||||++|+.+++.|.+ .... +..+..... ..+.. .+....+.+...|. ..+.++|+|+-+++.
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s-aGk~~--~~~~~~l~v~~~~~--~~~~~~Divf~a~~~- 78 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS-AGKTV--QFKGREIIIQEAKI--NSFEGVDIAFFSAGG- 78 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc-CCCCe--eeCCcceEEEeCCH--HHhcCCCEEEECCCh-
Confidence 45899999999999999999985 5555 555543211 11111 12222344444443 345789999987641
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCC---CCC-CCCCCCChhHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYW---GNV-NPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~---~~~-~~~~~~~~Y~~sK~~~E 267 (442)
.....++..+.+.|+.+|=.||..-+.....-.+.|--. ... .-+...++|...-..+-
T Consensus 79 -----------------~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~tt~~~laL 141 (347)
T PRK06728 79 -----------------EVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTAL 141 (347)
T ss_pred -----------------HHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHHHHHHHHH
Confidence 123355666677788888888877653322222222100 000 11223467765544443
Q ss_pred HHHHHHHhhcCCcEEEEe
Q 013467 268 TLTMDYHRGAGVEVRIAR 285 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiR 285 (442)
.-+ .+..+++.+++-
T Consensus 142 ~PL---~~~~~i~~v~V~ 156 (347)
T PRK06728 142 QPI---RKVFGLERIIVS 156 (347)
T ss_pred HHH---HHcCCccEEEEE
Confidence 333 344566655444
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.01 Score=53.82 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 109 ~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|.-...++++|+|+|| |-+|...++.|++.|++|+++.+.. .+.+........+.+...+.....+.++|.||-+.
T Consensus 3 Pl~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~---~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 3 PLMIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL---TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred ceEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC---CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 3344567789999996 9999999999999999999996532 11222222234566666555666678899888653
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.029 Score=52.22 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccc------------------c--CCCc--eeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHH------------------F--GNPN--FELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~------------------~--~~~~--v~~~ 169 (442)
+.+..+|+|.| .|.+|++++..|...|. +++++|.+.-....-.+.. + -++. ++.+
T Consensus 21 ~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 34456899999 59999999999999995 7888876532111100000 0 0122 2233
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+.+ +.+.++|+||.+.- |...-..+-++|.+.++.||+.++.+.+|
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCTD-----------------NVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 222221 24567898887652 22333456688999999999877765554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.031 Score=53.24 Aligned_cols=104 Identities=15% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc----------------------ccccccCCCceeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE----------------------NVMHHFGNPNFELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~----------------------~~~~~~~~~~v~~~~~ 171 (442)
...+|||.| .|.||..+++.|...|. +|+++|...-...+ .+.+.-..-+++....
T Consensus 18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 345899999 58899999999999996 78888754211111 0001111224455555
Q ss_pred cccccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 172 D~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
++.+..+.+.|+||.+.. |......+-++|++.++.||...+.+.+|.
T Consensus 97 ~~~~~~l~~fdvVV~~~~-----------------~~~~~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 97 PLTTDELLKFQVVVLTDA-----------------SLEDQLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred cCCHHHHhcCCEEEEecC-----------------CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence 555567778999887642 233334566889999999999998887763
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.027 Score=51.15 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=53.3
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEe
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
...++++|+|.|| |-+|..-++.|++.|.+|++++.... +.+.......++.++..+.....+.+++.||-+
T Consensus 5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 5 ANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred EEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 3456779999995 99999999999999999999975322 222222233478888888777777888888854
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.033 Score=51.71 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEE---EEeCC-CCCCccccccccCCCcee-EEeccccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVI---VVDNF-FTGRKENVMHHFGNPNFE-LIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~---~l~r~-~~~~~~~~~~~~~~~~v~-~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.+.+|.|.||.|+||+-|.. |++....|. ..|.. .++-...+.+.-....+. |.-.|-.+.++.++|+||--||
T Consensus 27 ~~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAG 105 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAG 105 (345)
T ss_pred CcceEEEEecCCccCccHHH-HHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCC
Confidence 34589999999999999966 556665332 33322 122223333332222332 3334566778899999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. ....-..++.+++|-.-...|..++.+.-. .+.++|
T Consensus 106 VP--RKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 106 VP--RKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CC--CCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 53 333345678899999999999998887643 566666
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.026 Score=52.05 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=50.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
|+++|.| .|-+|..+++.|.++||+|++++++.....+... ....+..+.+|.+++ -+.++|++|-..+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA---DELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh---hhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 5789999 5999999999999999999999975433222111 124567777777665 2457999997654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.035 Score=54.90 Aligned_cols=105 Identities=17% Similarity=0.088 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc--------------------CCC--ceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF--------------------GNP--NFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~--------------------~~~--~v~~~ 169 (442)
+.+..+|+|.|+ |.+|+++++.|...|. +++++|...-......+..+ -++ .++.+
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 345568999995 9999999999999996 88888865311111000000 012 23333
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+.. ..+.++|+||.+.. |...-..+-++|.+.++.||+.+..+.+|
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd~~d-----------------~~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILDGSD-----------------NFDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 333332 34678999998752 22233346678899998999888766554
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.046 Score=52.79 Aligned_cols=100 Identities=13% Similarity=0.235 Sum_probs=64.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc----------------------ccCCCceeEEecccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH----------------------HFGNPNFELIRHDVV 174 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~----------------------~~~~~~v~~~~~D~~ 174 (442)
+|+|.|+ |.||.++++.|+..|. +++++|.+.-.....-+. .-..-.++....++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4899995 9999999999999996 788887642211110000 001123334444444
Q ss_pred c-----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 175 E-----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 175 ~-----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
+ ..+.+.|+||.+. .|...-..+-+.|.+.++.||...+.+.+|
T Consensus 80 ~~~~~~~f~~~~DvVv~a~-----------------Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNAL-----------------DNLAARRHVNKMCLAADVPLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcCCEEEECC-----------------CCHHHHHHHHHHHHHCCCCEEEEecCccee
Confidence 3 3456788888764 234444556788888888999888877665
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=54.62 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccC----CCceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|+||.|.||+|+-|..|++.|..+.+ +++....+.. ..+.+..... .....+...|.......+||+||-+-..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh-cCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 67999999999999999999999864 7665543221 2222222111 1123333334333345569999976421
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
.....++....+.|+++|=+|...
T Consensus 81 ------------------g~s~~~v~~l~~~g~~VIDLSadf 104 (349)
T COG0002 81 ------------------GVSAELVPELLEAGCKVIDLSADF 104 (349)
T ss_pred ------------------hhHHHHHHHHHhCCCeEEECCccc
Confidence 112345555666677888888765
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.038 Score=53.32 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=54.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
+++|.|.||||++|..|++.|.++.+ ++..+..... . .. +..+..+.++|+||-+...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~----------~~-----~~~~~~~~~~DvvFlalp~---- 60 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--K----------DA-----AARRELLNAADVAILCLPD---- 60 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--C----------cc-----cCchhhhcCCCEEEECCCH----
Confidence 45899999999999999999988864 5555543211 1 00 1122344578999876531
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
.-...++..+.+.|+++|=.|+..-
T Consensus 61 --------------~~s~~~~~~~~~~g~~VIDlSadfR 85 (313)
T PRK11863 61 --------------DAAREAVALIDNPATRVIDASTAHR 85 (313)
T ss_pred --------------HHHHHHHHHHHhCCCEEEECChhhh
Confidence 1233455556667889998888653
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.052 Score=44.73 Aligned_cols=30 Identities=23% Similarity=0.556 Sum_probs=26.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhC-CCeEEEEe
Q 013467 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVD 147 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~ 147 (442)
++.|+|++|.+|..++..|.+. ++++..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~ 31 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALA 31 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEE
Confidence 4889999999999999999995 77888773
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.01 Score=56.60 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCC-ceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNP-NFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++|+|+|+ |.+|+.++..|.+.| .+|++++|+.... +.+...+... .+.+ ..+. ...+.++|+|||+...
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a-~~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~ 195 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERA-EELAKLFGALGKAEL-DLEL-QEELADFDLIINATSA 195 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHhhhccceee-cccc-hhccccCCEEEECCcC
Confidence 45678999996 999999999999999 7999999864322 2222222111 1222 1121 2455679999998754
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.021 Score=49.43 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=51.1
Q ss_pred cCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEe
Q 013467 108 IPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 108 ~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
+|.-...++++|+|.|| |-+|...++.|++.|++|+++.. ...+.+.. ...+.+......+..+.+.|.||-+
T Consensus 5 ~P~~l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp---~~~~~l~~---l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSP---EICKEMKE---LPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cceEEEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC---ccCHHHHh---ccCcEEEecccChhcCCCceEEEEC
Confidence 55566778889999995 99999999999999999999842 12222221 1244455555555567778888864
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.035 Score=54.58 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=57.7
Q ss_pred CEEEEEcCCchhHHHHHHHHH-hCCCe---EEEEeCCCCCCccccccccCCCceeEEecccccc-ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLI-ARGDS---VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll-~~g~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~d~Vih~A~~~ 191 (442)
++|.|.||||-+|+.+++.|. ++.+. ++.+.-. +.......+......+. ++.+. .+.++|+++.+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~---~s~g~~~~f~~~~~~v~--~~~~~~~~~~vDivffa~g~- 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS---QLGQAAPSFGGTTGTLQ--DAFDIDALKALDIIITCQGG- 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch---hhCCCcCCCCCCcceEE--cCcccccccCCCEEEEcCCH-
Confidence 479999999999999999999 55653 4444321 11111112222233222 33342 67789999998862
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccc
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVY 234 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy 234 (442)
.-+..+...+.++|. .+|=-||..-+
T Consensus 75 -----------------~~s~~~~p~~~~aG~~~~VIDnSSa~Rm 102 (366)
T TIGR01745 75 -----------------DYTNEIYPKLRESGWQGYWIDAASSLRM 102 (366)
T ss_pred -----------------HHHHHHHHHHHhCCCCeEEEECChhhhc
Confidence 134567777888894 45555555443
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.071 Score=49.39 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc-------------------cc--CCCce--eEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH-------------------HF--GNPNF--ELI 169 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~-------------------~~--~~~~v--~~~ 169 (442)
.+..+|+|.| .|.+|+++++.|...|. +++++|.+.-....-.+. .+ -++.+ +..
T Consensus 25 L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 25 LKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 3455899999 59999999999999995 788887542111000000 00 01222 222
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
...+.+ ..+.++|+||.+.- |...-..+-++|++.++.+|+.++.+.+|.
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d-----------------~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLD-----------------NFETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 222221 24567888887652 222223455788999999999888877764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.036 Score=57.30 Aligned_cols=74 Identities=24% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.+++|+|.|+ |++|..+++.|.++|++|+++++............+...++.+...+-.. ...++|.||...|.
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGW 88 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCc
Confidence 4568999995 99999999999999999999986543222222222333456665543322 34568999988775
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.058 Score=51.26 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccc------------------c--CCC--ceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHH------------------F--GNP--NFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~------------------~--~~~--~v~~~ 169 (442)
+.+..+|+|.| .|.||+.++..|+..|. +++++|.+.-......+.. + -++ +++.+
T Consensus 24 kL~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 24 RLRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 34456899999 58999999999999996 7888876421111100000 0 012 23333
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
...+.+ +.+.++|+||.+.- . .++..-..+-++|.+.++.+|+.|..+..
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D-----~----------~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLD-----F----------FEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCC-----C----------CcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 333332 34567899885431 0 11233345678899999999988765443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.19 Score=46.43 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc------------------cc--CCC--ceeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH------------------HF--GNP--NFELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~------------------~~--~~~--~v~~~~~ 171 (442)
+..+|+|.| .|.+|+++++.|.+.|. +++++|...-......+. .+ -++ +++.+..
T Consensus 10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 345899999 59999999999999996 888887542111000000 00 012 2233332
Q ss_pred ccc----cccc-CCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 172 DVV----EPLL-LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 172 D~~----~~~~-~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
.+. +..+ .++|+||.+.. |+..-..|.+.|.+.++.||...+.+-
T Consensus 89 ~i~~~~~~~l~~~~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAID-----------------SIRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred ecCHhHHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 222 1222 35899888752 233345678999999888877665543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.013 Score=55.70 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC-CceeEEeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.+++++|+|+ |.+|+.++..|.+.|++|++.+|..... +.+...+.. ..+.... ..+....++|+|||+.+.
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~-~~la~~~~~~~~~~~~~--~~~~~~~~~DivInatp~ 188 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKA-EELAERFQRYGEIQAFS--MDELPLHRVDLIINATSA 188 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHhhcCceEEec--hhhhcccCccEEEECCCC
Confidence 3568999997 8999999999999999999998864322 222222111 1122222 222234579999999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.072 Score=48.63 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccc-----------------cccc--CCC--ceeEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENV-----------------MHHF--GNP--NFELIRH 171 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~-----------------~~~~--~~~--~v~~~~~ 171 (442)
.+..+|+|.| .|.+|+.++..|.+.|. +++++|.+.-...... ...+ -++ .++.+..
T Consensus 26 L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 3445899999 59999999999999996 6888887521110000 0000 012 2223332
Q ss_pred cccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CCeEEEeecCccccC
Q 013467 172 DVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GARFLLTSTSEVYGD 236 (442)
Q Consensus 172 D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~r~i~iSS~~vy~~ 236 (442)
.+.+ ..+.++|+||.+. -|...-..+.+.|.+. ++.+|+.+...-|+.
T Consensus 105 ~i~~~~~~~~~~~~DvVI~a~-----------------D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 105 KIDEDNIEELFKDCDIVVEAF-----------------DNAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred ecCHHHHHHHHcCCCEEEECC-----------------CCHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 2322 3456789888763 2333334567788887 888998876555543
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.2 Score=42.88 Aligned_cols=191 Identities=17% Similarity=0.120 Sum_probs=100.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccc---------ccc---c--cCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---------VEP---L--LLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~---------~~~---~--~~~~d 182 (442)
.+|+|.||-|-+|+..++.+.++++-|.-++-......+ .--+++.|- .++ . -+++|
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad---------~sI~V~~~~swtEQe~~v~~~vg~sL~gekvD 74 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD---------SSILVDGNKSWTEQEQSVLEQVGSSLQGEKVD 74 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc---------ceEEecCCcchhHHHHHHHHHHHHhhcccccc
Confidence 379999999999999999999999988887753221111 011222221 010 1 13599
Q ss_pred EEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecC-ccccCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTS-EVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 183 ~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~-~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
.|++.||-..... ...+-+.+++-.+....--...+..+ .. -++.+... ... .+..
T Consensus 75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl----------------~gTP 138 (236)
T KOG4022|consen 75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAAL----------------GGTP 138 (236)
T ss_pred eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccccc----------------CCCC
Confidence 9999997322111 11122223333332222122222222 11 23333322 222 2223
Q ss_pred CCChhHHHHHHHHHHHHHHHhh-cCCc----EEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG-AGVE----VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~-~g~~----~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
..-.|+..|.+..++++.++.+ .|++ +..|-|-.+--|. +++-++ + ....+|.+
T Consensus 139 gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPM-----------------NRKwMP---~-ADfssWTP 197 (236)
T KOG4022|consen 139 GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPM-----------------NRKWMP---N-ADFSSWTP 197 (236)
T ss_pred cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcc-----------------ccccCC---C-CcccCccc
Confidence 3468999999999999998643 4554 3333333232332 111122 1 23457888
Q ss_pred HHHHHHHHHHHHc---CCCCc-cEEecC
Q 013467 330 VSDLVEGLMRLME---GEHVG-PFNLGN 353 (442)
Q Consensus 330 v~Dva~ai~~~l~---~~~~g-~~~i~~ 353 (442)
..-+++.+..-.. +|..| ...++.
T Consensus 198 L~fi~e~flkWtt~~~RPssGsLlqi~T 225 (236)
T KOG4022|consen 198 LSFISEHFLKWTTETSRPSSGSLLQITT 225 (236)
T ss_pred HHHHHHHHHHHhccCCCCCCCceEEEEe
Confidence 8888888777654 34455 444443
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.047 Score=53.82 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCe---EEEEeCCCCCCccccccccCCCceeEEecccc-ccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDS---VIVVDNFFTGRKENVMHHFGNPNFELIRHDVV-EPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~d~Vih~A~~ 190 (442)
|++|.|.||||++|+.+++.|+++ ... ++.+.....+ .....+........ +.. ...+.++|+|+.+++.
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg---~~~~~f~g~~~~v~--~~~~~~~~~~~Divf~a~~~ 75 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAG---GAAPSFGGKEGTLQ--DAFDIDALKKLDIIITCQGG 75 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhC---CcccccCCCcceEE--ecCChhHhcCCCEEEECCCH
Confidence 468999999999999999966655 454 5555432111 11112222222222 222 2345789999987752
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCe--EEEeecCccc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR--FLLTSTSEVY 234 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r--~i~iSS~~vy 234 (442)
.-+..+...+.++|++ +|=.||..-+
T Consensus 76 ------------------~~s~~~~~~~~~aG~~~~VID~Ss~fR~ 103 (369)
T PRK06598 76 ------------------DYTNEVYPKLRAAGWQGYWIDAASTLRM 103 (369)
T ss_pred ------------------HHHHHHHHHHHhCCCCeEEEECChHHhC
Confidence 1234566667778854 6666665544
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.033 Score=55.62 Aligned_cols=104 Identities=23% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCC------------------Ccccccccc--CCCce--eEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTG------------------RKENVMHHF--GNPNF--ELIR 170 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~------------------~~~~~~~~~--~~~~v--~~~~ 170 (442)
.+..+|+|.| .|.+|++++..|...|. +++++|+..-. +.+.....+ .++.+ ....
T Consensus 133 l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4556899998 58999999999999997 78888875210 001111111 01222 2233
Q ss_pred cccc----ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 171 HDVV----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 171 ~D~~----~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
..+. +..+.++|+||++.. |...-..+-++|.+.++.||+.+..+.+|
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~g~~g 263 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGAD-----------------NFPTRYLLNDACVKLGKPLVYGAVFRFEG 263 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 2222 224567999998752 12222246688999999999988765544
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.066 Score=51.69 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=68.4
Q ss_pred EEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc---ccccc--CCCceeEEe-ccccccccCCCCEEEEecccC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN---VMHHF--GNPNFELIR-HDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~---~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A~~~ 191 (442)
|.|+|+ |.+|..++..|+..|. +|+++|++....... +.+.. ......+.. .| ...+.++|+||.+++..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCCC
Confidence 568997 9999999999998876 999999874322111 11111 111223322 34 24588999999999853
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. .......+.+..|+.-...+++...+... .+|.+|
T Consensus 78 ~--~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 78 R--KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred C--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 22233445667788888888888888764 455555
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.057 Score=54.17 Aligned_cols=105 Identities=22% Similarity=0.178 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc--------------------CCCc--eeEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF--------------------GNPN--FELIR 170 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~--------------------~~~~--v~~~~ 170 (442)
.+..+|+|.| .|.||++++..|...|. +++++|.+.-......+..+ -++. ++.+.
T Consensus 40 L~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 4455899999 59999999999999996 78888754211111000000 0122 33333
Q ss_pred ccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC
Q 013467 171 HDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236 (442)
Q Consensus 171 ~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~ 236 (442)
..+.. ..+.++|+||.+. .|...-..+-++|.+.++.||+.+..+.+|.
T Consensus 119 ~~i~~~~~~~~~~~~D~Vvd~~-----------------d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 119 FRLDPSNAVELFSQYDLILDGT-----------------DNFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred ccCChhHHHHHHhcCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 33332 3456789888764 2233333466888999989999888776663
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.028 Score=61.50 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=99.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc---ccccccCCC--ceeEEecccccc-----------ccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE---NVMHHFGNP--NFELIRHDVVEP-----------LLL 179 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~--~v~~~~~D~~~~-----------~~~ 179 (442)
.+.++|+||-|+.|-.++..|..||.+-.++..+..-+.. ...+..... ++.+...|+... .+.
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 3579999999999999999999999876666533221211 111111222 333333444332 223
Q ss_pred CCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
-+-.|+|+|+.....-.++ ++.+.-+.-+.||.||=+..++.= . -||..||.+.- ..
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscG----------------RG 1911 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCG----------------RG 1911 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeeccc----------------CC
Confidence 4788999998655433333 344455566788888888777754 2 68989987642 11
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~ 288 (442)
....+.||.+..+.|+++..- +..|++-+.|-=|-
T Consensus 1912 N~GQtNYG~aNS~MERiceqR-r~~GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1912 NAGQTNYGLANSAMERICEQR-RHEGFPGTAIQWGA 1946 (2376)
T ss_pred CCcccccchhhHHHHHHHHHh-hhcCCCcceeeeec
Confidence 122377999999999999775 45577776665443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.073 Score=51.32 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=71.4
Q ss_pred EEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcccccccc-----CCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 121 VTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHF-----GNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 121 VtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
|.| .|.||..++..|+..+. ++..+|+..........+.. ....+.+...| .+.+.++|+||-+||...
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~r- 76 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQ- 76 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCC-
Confidence 456 59999999999998874 79999885432222211111 11233444222 357889999999999632
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
....+..+.+..|..-.+.+.+..++.+. .+|.+|-
T Consensus 77 -k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 77 -KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 22345678899999999999999988874 6777763
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.019 Score=49.42 Aligned_cols=74 Identities=23% Similarity=0.379 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
++++|+|+|+ |.+|..+++.|.+.| ++|++.+|+..... .....+....+.....|. ++.+.++|+||++....
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~ 92 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAK-ALAERFGELGIAIAYLDL-EELLAEADLIINTTPVG 92 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHH-HHHHHHhhcccceeecch-hhccccCCEEEeCcCCC
Confidence 3468999997 999999999999996 78999988543222 111111111011111222 22367899999998643
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.1 Score=47.73 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=57.9
Q ss_pred CCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEE
Q 013467 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIY 185 (442)
Q Consensus 106 ~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vi 185 (442)
+.+|.....++++|||+|| |-+|..=++.|++.|.+|+++.-. -.+.+.......++.++..+.....+.+++.||
T Consensus 15 ~~~pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVi 90 (223)
T PRK05562 15 KYMFISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIV 90 (223)
T ss_pred CEeeeEEECCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEE
Confidence 3566677778889999996 999999899999999999998532 222222233445788888777777778888888
Q ss_pred Eec
Q 013467 186 HLA 188 (442)
Q Consensus 186 h~A 188 (442)
-+.
T Consensus 91 aAT 93 (223)
T PRK05562 91 IAT 93 (223)
T ss_pred ECC
Confidence 653
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.27 Score=46.57 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=55.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeC-CCCCCc-cccccccCC--CceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDN-FFTGRK-ENVMHHFGN--PNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r-~~~~~~-~~~~~~~~~--~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|++|.|.|++|.+|+.+++.+.+. +.++.++.- ..+... ......... ..+.+ ..|+.+ ...++|+||-+..
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~-~~d~~~-l~~~~DvVIdfT~- 77 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV-TDDLEA-VETDPDVLIDFTT- 77 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCcee-eCCHHH-hcCCCCEEEECCC-
Confidence 368999999999999999999875 677776543 322111 111111010 11211 123322 2346899998652
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
-.....+++.|.+.|+.+|.-++
T Consensus 78 -----------------p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 78 -----------------PEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred -----------------hHHHHHHHHHHHHCCCCEEEECC
Confidence 12345678888999987665443
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=48.29 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=54.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeE-EEEeCCCCCCcccccc-ccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSV-IVVDNFFTGRKENVMH-HFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V-~~l~r~~~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
+|+|.|.|++|-+|+.+++.+.+.+ .++ -+++|........... ......+.+.-.|-......++|++|-+-.+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P-- 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP-- 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCc--
Confidence 6799999999999999999999886 444 4555543322111111 1111112222122233345578999976432
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
.++...++.|.+.++++|
T Consensus 80 ----------------~~~~~~l~~~~~~~~~lV 97 (266)
T COG0289 80 ----------------EATLENLEFALEHGKPLV 97 (266)
T ss_pred ----------------hhhHHHHHHHHHcCCCeE
Confidence 345667888888876544
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=47.97 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=63.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccc------------------c--CCC--ceeEEecccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHH------------------F--GNP--NFELIRHDVV 174 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~------------------~--~~~--~v~~~~~D~~ 174 (442)
+|+|.| .|.+|.++++.|...|. +++++|.+.-......++. + .++ ++..+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 489999 69999999999999996 7888886521111000000 0 012 2333333331
Q ss_pred ------ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 175 ------EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 175 ------~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
+..+.++|+||.+. .|+..-..+-+.|.+.++.+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~-----------------Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNAL-----------------DNIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence 23456788888764 344455567788888888899888876665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.065 Score=54.87 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=48.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
|+|+|+|+ |.+|+.+++.|.+.|++|++++++..... ... ....+.++.+|..+. .+.++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~-~~~---~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLR-RLQ---DRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHH-HHH---hhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 58999997 99999999999999999999987533211 111 113567777877654 256789988765
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.015 Score=50.76 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
||+|.+.| .|-+|+.+++.|++.|++|++.+|......+ +.. .. ....+-..+...++|+||-+-
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~-~~~----~g--~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEA-LAE----AG--AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHH-HHH----TT--EEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhh-hHH----hh--hhhhhhhhhHhhcccceEeec
Confidence 57899999 6999999999999999999999885322111 111 12 333444555666789999764
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.078 Score=46.79 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=59.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc-----------------ccccc--CCC--ceeEEeccccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN-----------------VMHHF--GNP--NFELIRHDVVE 175 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~-----------------~~~~~--~~~--~v~~~~~D~~~ 175 (442)
+|+|.| .|.+|+++++.|.+.|. +++++|.+.-..... ....+ -++ ++..+...+..
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 489999 59999999999999997 699998753110000 00000 012 22223322222
Q ss_pred ----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CCeEEEeecCccccC
Q 013467 176 ----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GARFLLTSTSEVYGD 236 (442)
Q Consensus 176 ----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~r~i~iSS~~vy~~ 236 (442)
..+.++|+||.+. .|...-..+.+.|.+. ++.||+.+...-|+.
T Consensus 80 ~~~~~~l~~~DlVi~~~-----------------d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~ 128 (174)
T cd01487 80 NNLEGLFGDCDIVVEAF-----------------DNAETKAMLAESLLGNKNKPVVCASGMAGFGD 128 (174)
T ss_pred hhHHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHHCCCCEEEEehhhccCC
Confidence 3466799999874 2223334466777666 778887765554443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.036 Score=50.08 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.++|+|+|+|. |-+|+++++.|.+.|++|++.+++.... ......+ ....+.. .+....++|+++.+|.
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~-~~~~~~~---g~~~v~~--~~l~~~~~Dv~vp~A~ 94 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAV-ARAAELF---GATVVAP--EEIYSVDADVFAPCAL 94 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHc---CCEEEcc--hhhccccCCEEEeccc
Confidence 45679999996 7999999999999999999888753211 1111111 2233222 2222237999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.02 Score=51.12 Aligned_cols=33 Identities=39% Similarity=0.542 Sum_probs=26.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|.| .||+|..++..|++.||+|++++.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 6899998 89999999999999999999999753
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.19 Score=47.43 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~ 149 (442)
+..+|+|.| .|.+|+++++.|++.| .+++++|.+
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 445899999 5999999999999999 588888864
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.094 Score=41.86 Aligned_cols=88 Identities=23% Similarity=0.245 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
.++++|+|+|| |-+|..-++.|++.|.+|+++.... +... ..+.+..-+.. ..+.+++.||-+.+
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at~---- 69 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAATD---- 69 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-SS----
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecCC----
Confidence 45679999996 9999999999999999999997642 1001 34455555443 56778898884331
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
|-.-...+.+.|++.++ ++.++.
T Consensus 70 -------------d~~~n~~i~~~a~~~~i-~vn~~D 92 (103)
T PF13241_consen 70 -------------DPELNEAIYADARARGI-LVNVVD 92 (103)
T ss_dssp --------------HHHHHHHHHHHHHTTS-EEEETT
T ss_pred -------------CHHHHHHHHHHHhhCCE-EEEECC
Confidence 11122457778877663 555554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.04 Score=56.08 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=44.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|+|+|+||+|.+|..+++.|.+.|++|++.+|+..... ..... .++.+ .+-....+.++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-~~a~~---~gv~~--~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-EVAKE---LGVEY--ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-HHHHH---cCCee--ccCHHHHhccCCEEEEec
Confidence 58999999999999999999999999999998543211 11111 12221 111233466789999875
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.042 Score=57.32 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecc-ccccccCCCCEEEEecccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD-VVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D-~~~~~~~~~d~Vih~A~~~ 191 (442)
.++++++|+|+ |.+|+.++..|.+.|.+|++++|..+ +.+.+...+.. ..+..+ ..+......|+|||+....
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e-~a~~la~~l~~---~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYE-RAKELADAVGG---QALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHhCC---ceeeHhHhhhhccccCeEEEecccCC
Confidence 45678999998 89999999999999999999888532 22222222211 122222 1111223578899887543
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.085 Score=53.40 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
+|+|.|.| .|++|..++..|.+.||+|++++++..
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 57899998 699999999999999999999998643
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=51.61 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc------------------cc--CCC--ceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH------------------HF--GNP--NFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~------------------~~--~~~--~v~~~ 169 (442)
+.+..+|+|.| .|.+|++++..|...|. +++++|.+.-....-.+. .+ -++ +++.+
T Consensus 38 ~l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 38 RLHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 34556899999 59999999999999995 888888652111100000 00 012 23333
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+.. +.+.++|+||.+. .|...-..+-++|.+.++.+|+.+..+.+|
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-----------------Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-----------------DSFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 333322 3566799999875 233333455678888898888887755544
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.099 Score=52.41 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc--------------------CCC--ceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF--------------------GNP--NFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~--------------------~~~--~v~~~ 169 (442)
+.+..+|+|.| .|.||+.+++.|...|. +++++|.+.-......+..+ .++ +++.+
T Consensus 35 ~L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 34556899999 58999999999999996 78887754211111001000 012 33334
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+.. ..+.++|+||.+.. |...-..+-++|.+.++.+|+.+..+.+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGTD-----------------NFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 433332 24567999998752 22233345578888888899888766665
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.16 Score=48.81 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=114.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
++|.| ||||-+|+.+++-|.++++ +++.+........+. -.+.. -++..-++.+..+.++|+++. +|.
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~--i~f~g--~~~~V~~l~~~~f~~vDia~f-ag~--- 74 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQG--IRFNN--KAVEQIAPEEVEWADFNYVFF-AGK--- 74 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCE--EEECC--EEEEEEECCccCcccCCEEEE-cCH---
Confidence 47999 9999999999999999986 455553321111111 11122 233334556667789999998 652
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCC------CCCCChhHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNP------IGVRSCYDEGKRTAE 267 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~------~~~~~~Y~~sK~~~E 267 (442)
.........+.++|+.+|=-||..-+...-.-.+.|--+..... +...++=. ...-
T Consensus 75 ---------------~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCsT---i~l~ 136 (322)
T PRK06901 75 ---------------MAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQV---SQLA 136 (322)
T ss_pred ---------------HHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHHH---HHHH
Confidence 12334566778889888888887665433222222221100000 00112211 2222
Q ss_pred HHHHHHHhhcCCcEEEEeeCc-eeCCCCccCCCchHHHHHH---HHHcCCCcEEecCCcee-EeccCHHH--HHHHHHHH
Q 013467 268 TLTMDYHRGAGVEVRIARIFN-TYGPRMCIDDGRVVSNFVA---QALRKEPLTVYGDGKQT-RSFQFVSD--LVEGLMRL 340 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~-v~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~v~v~D--va~ai~~~ 340 (442)
..+.-+.+..|++-+++-.-. +-|.|. .-++.+.. ..+.+.+... ...+. +|.++.-| +..-..++
T Consensus 137 ~aL~pL~~~~~l~rv~VsTyQavSGaG~-----~gv~eL~~qt~~~~n~~~~~~--~~~~iAFNviP~ig~~m~~EtrKI 209 (322)
T PRK06901 137 LALAPFLQEQPLSQIFVTSLLPASYTDA-----ETVKKLAGQTARLLNGIPLDE--EEQRLAFDVFPANAQNLELQLQKI 209 (322)
T ss_pred HHHHHHHHhcCCcEEEEEeecchhhcCH-----hHHHHHHHHHHHHhCCCCCCC--CceeeeccccccCCccHHHHHHHH
Confidence 223334445677766655433 445442 22344433 2334433311 11111 34443322 44444455
Q ss_pred HcCC-C-----------Cc---cEEecCCCccCHHHHHHHHHHHhCC
Q 013467 341 MEGE-H-----------VG---PFNLGNPGEFTMLELAQVVQETIDP 372 (442)
Q Consensus 341 l~~~-~-----------~g---~~~i~~~~~~s~~dl~~~l~~~~g~ 372 (442)
+.+- . .| ..++...++++..++.+.+.+.-|.
T Consensus 210 l~~l~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~gv 256 (322)
T PRK06901 210 FPQLENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNLL 256 (322)
T ss_pred hCCcccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCCc
Confidence 5211 1 02 4566667889999999999887553
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.077 Score=54.50 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=50.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+++|+|.| .|..|..+++.|.++|++|++.|+............+...++.+...+-....+.++|.||...|.
T Consensus 14 ~~~i~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 14 NKKVAVVG-IGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred CCeEEEEc-ccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCC
Confidence 45899999 688999999999999999999987543221111111233355665554433445779999998764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.072 Score=51.07 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG 152 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~ 152 (442)
+++|.|.|+ |.+|..++..|+..|++|++.+++.+.
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 348999995 999999999999999999999987543
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.15 Score=48.13 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=57.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc-c------ccCCCc-----------eeEEeccc----
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM-H------HFGNPN-----------FELIRHDV---- 173 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~-~------~~~~~~-----------v~~~~~D~---- 173 (442)
.-|+|+| .|.+|++++..|++.|. ++.+++-..-.- ..+. + ..+.++ .-+.+.|.
T Consensus 75 syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqVSl-sSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l 152 (430)
T KOG2018|consen 75 SYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQVSL-SSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNML 152 (430)
T ss_pred cEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhccH-hhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence 3588888 58899999999999996 677776431110 0000 0 001111 01111121
Q ss_pred -----ccc-ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 174 -----VEP-LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 174 -----~~~-~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
.+. .+.+.|.|+.|. .|++.-..|++.|..+|.++| ||+++-
T Consensus 153 ~~~~s~edll~gnPdFvvDci-----------------DNidtKVdLL~y~~~~~l~Vi--ss~Gaa 200 (430)
T KOG2018|consen 153 WTSSSEEDLLSGNPDFVVDCI-----------------DNIDTKVDLLEYCYNHGLKVI--SSTGAA 200 (430)
T ss_pred cCCCchhhhhcCCCCeEeEhh-----------------hhhhhhhHHHHHHHHcCCceE--eccCcc
Confidence 111 233578888775 577777789999999987665 555544
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.11 Score=50.02 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=52.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCcc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHY 196 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~ 196 (442)
+|.|.||+||.|..|++.|.++.+ ++..+.-.. . ++ ..| .+..+.++|+||-+...
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~--~------------~~--~~~-~~~~~~~~D~vFlalp~------ 59 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR--R------------KD--AAE-RAKLLNAADVAILCLPD------ 59 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc--c------------cC--cCC-HhHhhcCCCEEEECCCH------
Confidence 799999999999999999998864 666654211 1 00 011 12344679999876531
Q ss_pred cCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 197 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 197 ~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
.....++..+.+.|+++|=.|+..
T Consensus 60 ------------~~s~~~~~~~~~~g~~VIDlSadf 83 (310)
T TIGR01851 60 ------------DAAREAVSLVDNPNTCIIDASTAY 83 (310)
T ss_pred ------------HHHHHHHHHHHhCCCEEEECChHH
Confidence 123345556666788999888754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.035 Score=55.35 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+++|.|.||.|.+|+.+++.|.+.|++|++.+|... +..+..+.++|+||-+.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhcCCEEEEeC
Confidence 468999999999999999999999999999987311 11223456799999876
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.039 Score=50.65 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=31.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|+||+|.+|+.++..|.+.|++|++.+|+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 5899999999999999999999999999998854
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.057 Score=47.30 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|+|+|+.+.+|..+++.|.++|.+|++..|.. +-....+.++|+||.+.+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------------------hhHHHHHhhCCEEEEcCC
Confidence 4567999999866789999999999999999888742 112235667899998776
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.024 Score=63.03 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-Ce-------------EEEEeCCCCCCccccccccCCCceeEEeccccc----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DS-------------VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE---- 175 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~-------------V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~---- 175 (442)
..+++|+|.|+ |++|+.+++.|.+.+ .+ |.+.++..... +.+... .++++.+..|+.+
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~--~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEG--IENAEAVQLDVSDSESL 642 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHh--cCCCceEEeecCCHHHH
Confidence 34779999996 999999999998763 23 66666543221 112111 1244555665544
Q ss_pred -cccCCCCEEEEecc
Q 013467 176 -PLLLEVDQIYHLAC 189 (442)
Q Consensus 176 -~~~~~~d~Vih~A~ 189 (442)
..+.++|+||++..
T Consensus 643 ~~~v~~~DaVIsalP 657 (1042)
T PLN02819 643 LKYVSQVDVVISLLP 657 (1042)
T ss_pred HHhhcCCCEEEECCC
Confidence 23467999999875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=52.68 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~ 187 (442)
..+++|+|.|+ |.+|+.+++.|.+.|++|++++++... .+.+... ..++.++.+|..+. .+.++|.||-+
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~-~~~~~~~--~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPER-AEELAEE--LPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH-HHHHHHH--CCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 34678999996 999999999999999999999875331 1111111 13567788887654 34578988855
Q ss_pred c
Q 013467 188 A 188 (442)
Q Consensus 188 A 188 (442)
.
T Consensus 305 ~ 305 (453)
T PRK09496 305 T 305 (453)
T ss_pred C
Confidence 4
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.044 Score=52.46 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccC--CCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
++++|+|.|+ |..|+.++..|.+.|. +|++++|.... .+.+...+. ...+.+...+-....+.++|+|||+.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~k-a~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPAR-AAALADELNARFPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHH-HHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence 4568999995 8899999999999996 89999886432 222322221 11233333333334567799999984
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.037 Score=53.00 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=48.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
...+++++|+|. |.+|+.+++.|...|.+|++.+|....... . .......+..+-..+.+.++|+||++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~-~----~~~g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR-I----TEMGLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-H----HHCCCeeecHHHHHHHhccCCEEEECC
Confidence 345679999995 889999999999999999999885421111 1 011222333333345667899999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.037 Score=52.62 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEE-eccccccccCCCCEEEEecccCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELI-RHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~-~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
.++++.|+|+.| ||+--++.-...|++|+++++....+++.........=++.. +.|.......-.|.++|++....
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a- 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA- 258 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc-
Confidence 568999999988 998888877778999999999765555554433222223333 45665555555566666553110
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
. .+ ...+++.++..| ++|+++-
T Consensus 259 ~-----------~~---~~~~~~~lk~~G-t~V~vg~ 280 (360)
T KOG0023|consen 259 E-----------HA---LEPLLGLLKVNG-TLVLVGL 280 (360)
T ss_pred c-----------cc---hHHHHHHhhcCC-EEEEEeC
Confidence 0 11 123566666555 7887774
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.67 Score=47.43 Aligned_cols=120 Identities=13% Similarity=0.053 Sum_probs=70.7
Q ss_pred EEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCcccCCh
Q 013467 121 VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNP 200 (442)
Q Consensus 121 VtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~~~~~ 200 (442)
|+||+|.+|..+++.|...|.+|+...+..... . .. ...+++.+++-+-- ....
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~-----~-------------~~--~~~~~~~~~~d~~~------~~~~ 96 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTW-----A-------------AG--WGDRFGALVFDATG------ITDP 96 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccc-----c-------------cC--cCCcccEEEEECCC------CCCH
Confidence 888899999999999999999999875432100 0 00 01134444432210 1112
Q ss_pred hHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc--C
Q 013467 201 VKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA--G 278 (442)
Q Consensus 201 ~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g 278 (442)
.+.. .-.......++.... +.+||+++|..... ....|+.+|...+.+++.++++. +
T Consensus 97 ~~l~-~~~~~~~~~l~~l~~-~griv~i~s~~~~~-------------------~~~~~~~akaal~gl~rsla~E~~~g 155 (450)
T PRK08261 97 ADLK-ALYEFFHPVLRSLAP-CGRVVVLGRPPEAA-------------------ADPAAAAAQRALEGFTRSLGKELRRG 155 (450)
T ss_pred HHHH-HHHHHHHHHHHhccC-CCEEEEEccccccC-------------------CchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2211 111223333333332 34899999865421 11348999999999999888764 6
Q ss_pred CcEEEEeeC
Q 013467 279 VEVRIARIF 287 (442)
Q Consensus 279 ~~~~iiRp~ 287 (442)
+++..+.|+
T Consensus 156 i~v~~i~~~ 164 (450)
T PRK08261 156 ATAQLVYVA 164 (450)
T ss_pred CEEEEEecC
Confidence 777777775
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.42 Score=49.37 Aligned_cols=163 Identities=18% Similarity=0.246 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCC-chhHHHHHHHHHhCCCeEEEEeCCCCCCc-ccccccc-----CCCceeEEeccccc-----------
Q 013467 114 RKGLRIVVTGGA-GFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHF-----GNPNFELIRHDVVE----------- 175 (442)
Q Consensus 114 ~~~~~vlVtGat-G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~-----~~~~v~~~~~D~~~----------- 175 (442)
-..+.++||||+ |-||..++..|+.-|..|++...+..... +..+... ....+-++..++..
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI 473 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI 473 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence 345689999875 88999999999999999998865432211 1111100 01111122222100
Q ss_pred ---------------cccCCCCEEEEecccCCCCcccC---ChhHHHHHhHHHHHHHHHHHHHcC----C----eEEEee
Q 013467 176 ---------------PLLLEVDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAKRVG----A----RFLLTS 229 (442)
Q Consensus 176 ---------------~~~~~~d~Vih~A~~~~~~~~~~---~~~~~~~~nv~gt~~ll~~a~~~g----~----r~i~iS 229 (442)
+.....|.+|-+|++.-.....+ .-+...++=+...++++-..++.+ + ++|.-.
T Consensus 474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPg 553 (866)
T COG4982 474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPG 553 (866)
T ss_pred ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecC
Confidence 11123788999988644332222 122334444555666666655543 2 355444
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC----CcEEEEeeCceeCCC
Q 013467 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG----VEVRIARIFNTYGPR 293 (442)
Q Consensus 230 S~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g----~~~~iiRp~~v~G~~ 293 (442)
|-+ .-.++....|+.+|...|.++..|..+.+ +..+--++||+-|-+
T Consensus 554 SPN-----------------rG~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 554 SPN-----------------RGMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred CCC-----------------CCccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 421 02334457899999999999999877652 344556677776654
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.027 Score=55.01 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=46.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc---c--CCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL---L--LEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~--~~~d~Vih~A~ 189 (442)
+.+|||+||+|.+|...++-+...|..+++...+..+.. .........-+++.+.|..+.. . .++|+|+...|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 568999999999999999988888976666554322222 2222222223444555544432 2 35999998875
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.055 Score=52.09 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.+++|+|+|. |.+|+.++..|...|.+|++.+|+..... .. ......++..+...+.+.++|+||++.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~-~~----~~~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLA-RI----TEMGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH-HH----HHcCCeeecHHHHHHHhCCCCEEEECC
Confidence 4569999995 88999999999999999999998633211 11 112333333333345667899999975
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.3 Score=45.32 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCC---chhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGA---GFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGat---G~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
..+++|.|.|++ |-+|..+++.|.+.|+ +|+.+.-. .... .++..+ .++. +.-..+|.+|-+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~----~~~i------~G~~~~-~sl~-~lp~~~Dlavi~v 72 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK----AGEI------LGVKAY-PSVL-EIPDPVDLAVIVV 72 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC----CCcc------CCcccc-CCHH-HCCCCCCEEEEec
Confidence 345689999997 6789999999999997 68776431 1111 011111 1111 1223578877553
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeec
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS 230 (442)
.-..+..+++.|.+.|+ .+|.+|+
T Consensus 73 ------------------p~~~~~~~l~e~~~~gv~~~vi~s~ 97 (447)
T TIGR02717 73 ------------------PAKYVPQVVEECGEKGVKGAVVITA 97 (447)
T ss_pred ------------------CHHHHHHHHHHHHhcCCCEEEEECC
Confidence 23345568888888998 5666665
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.29 Score=48.20 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=30.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|.| +||+|.....-|.+.||+|+++|...
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 6899999 89999999999999999999999753
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.37 Score=45.77 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
++++|.|.| .|.||+.+++.|.+. +++|..+......+.+.....+.. .. . .+-.++.+.++|+|+-++...
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~--~~-~-~~~~eell~~~D~Vvi~tp~~- 78 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR--PP-P-VVPLDQLATHADIVVEAAPAS- 78 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC--Cc-c-cCCHHHHhcCCCEEEECCCcH-
Confidence 346899999 699999999999874 678875544322222222211110 01 1 122333456799999887521
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
....+...+.++|+.++..|
T Consensus 79 -----------------~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 79 -----------------VLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred -----------------HHHHHHHHHHHcCCcEEEec
Confidence 11234555567787666544
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.085 Score=50.33 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=43.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..++++|+|.|++|.+|+.++..|+++|..|++..|. ... ....+.++|+||++.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~----t~~-----------------L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR----TQN-----------------LPELVKQADIIVGAVG 211 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC----chh-----------------HHHHhccCCEEEEccC
Confidence 4577899999999999999999999999998888652 111 1123367899999886
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.17 Score=49.17 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=48.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCce-eEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF-ELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|.|.| .|-||+.+++.|...|.+|++.++...... .+ .+...+-.++.+.++|+|+.+..
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~----------~~~~~~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP----------GVQSFAGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC----------CceeecccccHHHHHhcCCEEEECCC
Confidence 45678999999 899999999999999999999987432110 11 11223345667888999998764
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.081 Score=47.60 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=26.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVI 144 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~ 144 (442)
|+|.|.||+|.+|+.+++.|.+.|+.|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 5899999999999999999999999986
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.096 Score=51.18 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=66.8
Q ss_pred ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
.+.+++.+|++-|....... ........+...-+..|++... +.+. ++|.++|.+. .
T Consensus 200 ~l~~i~t~is~LGsts~~a~-~s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~-----------------~ 261 (410)
T PF08732_consen 200 SLDDIKTMISTLGSTSAQAK-SSKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNN-----------------N 261 (410)
T ss_pred chhhhhhheecCCCChhhcc-ccccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCc-----------------c
Confidence 45568899998875442211 1112222344555556666665 5554 8999998764 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~ 295 (442)
.......|-+.|...|.-+.......=-..+|+|||.+.|....
T Consensus 262 ~~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 262 AISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 33445789999999999987765432347899999999998654
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.27 Score=50.32 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC--CceeEEeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN--PNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.+++|+|+|+ |..|..+++.|.++|+.|.+.+....... ...+.. .++.+..+...+....++|.||...|.
T Consensus 4 ~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~---~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 4 QNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPER---VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGI 77 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchh---HHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCC
Confidence 3568999996 68999999999999999999986543211 111111 255555554444445679999998875
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.23 Score=50.25 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=30.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
|+|.|.| .|++|..++..|.+.||+|++.+++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 4799998 799999999999999999999998643
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.4 Score=40.49 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~ 147 (442)
-+|+|.|.||.+|+.+.+.|..-|.++++-+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V 37 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGV 37 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEE
Confidence 3799999999999999999999998855543
|
ATP citrate lyases appear to form an outgroup. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.18 Score=48.37 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=30.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
++|.|.| .|.+|..++..|++.|++|++.+++..
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5899999 599999999999999999999998643
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.4 Score=48.40 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=63.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC------eEEEEeCCCCCCccccccc------c--------------CCC--ceeEE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD------SVIVVDNFFTGRKENVMHH------F--------------GNP--NFELI 169 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~------~V~~l~r~~~~~~~~~~~~------~--------------~~~--~v~~~ 169 (442)
+|+|+| .|.||..+++.|+..|. +++++|.+.-....--+.. + -++ +++.+
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 489999 59999999999999987 8888876432111100000 0 012 22333
Q ss_pred ecccc--------ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDVV--------EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~~--------~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+. +..+.+.|+||++. -|+..-..+-+.|...++.+|..++.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~al-----------------Dn~~aR~~vn~~C~~~~iPli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANAL-----------------DNVDARMYVDRRCVYYRKPLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence 32221 12345688888754 345555567789999998899888877665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.054 Score=53.27 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEecccccccc----CCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL----LEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~d~Vih~A 188 (442)
.+++.|||.||+|.+|++.++-+...| ..|+..+.. ...+.........-+++-+.|..+... .++|+|+.|+
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~--e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~v 233 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSK--EKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCV 233 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEccc--chHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECC
Confidence 456789999999999999999888888 455555432 222222222122234455555544433 3699999999
Q ss_pred cc
Q 013467 189 CP 190 (442)
Q Consensus 189 ~~ 190 (442)
|.
T Consensus 234 g~ 235 (347)
T KOG1198|consen 234 GG 235 (347)
T ss_pred CC
Confidence 74
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.066 Score=50.90 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccC-CCCEEEEecccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL-EVDQIYHLACPAS 192 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~Vih~A~~~~ 192 (442)
.+++|+|.|| |+-++.++..|++.| .+|+++.|..+. .+.+...+......+...+..+.... ..|+|||+-...-
T Consensus 125 ~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~r-a~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 125 TGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRER-AEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 4578999995 899999999999999 589999986433 33333333221111111111111111 5899999876433
Q ss_pred CCcccCCh--h-------HHHHHhHHH-HHHHHHHHHHcCCe
Q 013467 193 PVHYKFNP--V-------KTIKTNVVG-TLNMLGLAKRVGAR 224 (442)
Q Consensus 193 ~~~~~~~~--~-------~~~~~nv~g-t~~ll~~a~~~g~r 224 (442)
.......+ . -.++++... ...+++.|++.|++
T Consensus 203 ~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 203 AGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred CCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 22211100 0 112222221 34678899998877
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.35 Score=39.16 Aligned_cols=64 Identities=23% Similarity=0.379 Sum_probs=45.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
|+|.|. |-+|..+++.|.+.+.+|++++++.... ..+....+.++.+|..+. .+.+++.||-+.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~-----~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERV-----EELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHH-----HHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHH-----HHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 578885 7899999999999777999998743221 111223478999998776 345789888765
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.28 Score=49.69 Aligned_cols=73 Identities=19% Similarity=0.123 Sum_probs=52.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+|+|+|.| -|--|..+++.|.++|+.|++.|.+........ ......++++..+...+.....+|.||-+-|+
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~-~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAA-QPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHHCCCeEEEEcCCCCccchhh-hhhhccCceeecCccchhccccCCEEEECCCC
Confidence 67999999 688899999999999999999985433311111 12223566666665555667789999988764
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.16 Score=51.78 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcC----------------CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc
Q 013467 113 KRKGLRIVVTGG----------------AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176 (442)
Q Consensus 113 ~~~~~~vlVtGa----------------tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 176 (442)
..++++||||+| ||-+|..|++++..+|++|+.+.-... +. ...+++++..+-.++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-----~~---~p~~v~~i~V~ta~e 324 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-----LA---DPQGVKVIHVESARQ 324 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-----CC---CCCCceEEEecCHHH
Confidence 367899999965 799999999999999999999863211 11 123455555443322
Q ss_pred c------cCCCCEEEEecccCC
Q 013467 177 L------LLEVDQIYHLACPAS 192 (442)
Q Consensus 177 ~------~~~~d~Vih~A~~~~ 192 (442)
. ....|++|++|++..
T Consensus 325 M~~av~~~~~~Di~I~aAAVaD 346 (475)
T PRK13982 325 MLAAVEAALPADIAIFAAAVAD 346 (475)
T ss_pred HHHHHHhhCCCCEEEEeccccc
Confidence 1 123799999999754
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.24 Score=55.46 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc----------------------ccccccCCCceeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE----------------------NVMHHFGNPNFELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~----------------------~~~~~~~~~~v~~~~~ 171 (442)
...+|||.|. |+||.++++.|...|. .|+++|-..-...+ .+.+.-..-.++....
T Consensus 23 ~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 101 (1008)
T TIGR01408 23 AKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV 101 (1008)
T ss_pred hhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence 3448999995 7799999999999996 78888754211100 0000101123455555
Q ss_pred cccccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC--CeEEEeecCcccc
Q 013467 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYG 235 (442)
Q Consensus 172 D~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g--~r~i~iSS~~vy~ 235 (442)
++.+..+.++|+||.+- .+......+-++|++.+ +.||+.++.+.||
T Consensus 102 ~l~~e~l~~fdvVV~t~-----------------~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 102 PFNEEFLDKFQCVVLTE-----------------MSLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred cCCHHHHcCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 56666778899999753 23334445778999999 6899998887776
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.25 Score=53.17 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccc---------------------cccCCCceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVM---------------------HHFGNPNFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~---------------------~~~~~~~v~~~ 169 (442)
+.+..+|+|.|. | +|++++..|...|. +++++|.+.-....-.+ ..-...+++.+
T Consensus 104 ~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 104 RLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 345568999999 8 99999999999994 88888764211100000 00011234444
Q ss_pred ecccc----ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecC
Q 013467 170 RHDVV----EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 170 ~~D~~----~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
...+. +..+.++|+||.+. -|+..=..|-++|.+.++.+|+-++.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~-----------------D~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEEC-----------------DSLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44333 23456799999875 23333334568899999888887753
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.13 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+.+|+|+||+|.+|..++..+...|.+|++++++
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45689999999999999998888889999988765
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.081 Score=50.58 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCC-CceeEEec-cccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGN-PNFELIRH-DVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~-D~~~~~~~~~d~Vih~A~~ 190 (442)
++++|+|.|+ |..|+.++..|.+.|. +|+++.|..+ +.+.+...+.. ..+..+.. +-....+.++|+|||+...
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~-ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPD-KLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHH-HHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 4568999995 9999999999999996 7999988643 22333322211 11111111 1112344679999998754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.071 Score=47.23 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=46.4
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
....+++|.|.| .|-||+.+++.|..-|.+|++.+|....... . ....+ ..+-.++.+..+|+|+.+...
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~----~~~~~---~~~~l~ell~~aDiv~~~~pl 101 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEG-A----DEFGV---EYVSLDELLAQADIVSLHLPL 101 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHH-H----HHTTE---EESSHHHHHHH-SEEEE-SSS
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhh-c----ccccc---eeeehhhhcchhhhhhhhhcc
Confidence 455678999999 7999999999999999999999985432210 0 00112 233455667789999987753
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.45 Score=48.09 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=61.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc------------------ccc--CCCc--eeEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM------------------HHF--GNPN--FELIRHD 172 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~------------------~~~--~~~~--v~~~~~D 172 (442)
..+|+|.|+ |.+|..+++-|...|. .++++|-..-...+.-. ..+ -++. ++++..+
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~ 98 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES 98 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 347999995 5599999999999996 78888754211100000 000 0122 2333333
Q ss_pred cc------ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 173 VV------EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 173 ~~------~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
.. ...+.+.|+||.+- .+......+.+.|.+.++.||+++|.+.||
T Consensus 99 ~~~ll~~~~~f~~~fdiVI~t~-----------------~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G 150 (425)
T cd01493 99 PEALLDNDPSFFSQFTVVIATN-----------------LPESTLLRLADVLWSANIPLLYVRSYGLYG 150 (425)
T ss_pred cchhhhhHHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEecccCEE
Confidence 21 12345678887432 112223346788999999999999999887
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.11 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=30.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
++|.|.|+ |.+|..++..|++.|++|++.+++.+
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 47999996 99999999999999999999998644
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.11 Score=50.57 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=49.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...++++.|.| .|-||+.+++.|..-|.+|++.++....... ........+-.++.+..+|+|+...-
T Consensus 139 el~gkTvGIiG-~G~IG~~va~~l~afgm~v~~~d~~~~~~~~--------~~~~~~~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 139 ELAGKTVGIIG-LGRIGRAVAKRLKAFGMKVIGYDPYSPRERA--------GVDGVVGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred cccCCEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCCchhhh--------ccccceecccHHHHHhhCCEEEEcCC
Confidence 45688999999 7999999999999999999999873222111 11223445556777888898886653
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.25 Score=47.95 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.++|.|.| .|.+|..++..|++.|++|++++++.
T Consensus 4 ~~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIG-AGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35899998 49999999999999999999998754
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.27 Score=46.95 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=42.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|+|.|.| .|.+|..++..|.+.|++|++.+|+........ ....++....+. +.+.++|+||-+.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~----~~g~~~~~~~~~--~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI----ERGLVDEASTDL--SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HCCCcccccCCH--hHhcCCCEEEEcC
Confidence 4799998 799999999999999999999998532211111 111111111121 2456899999875
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.098 Score=52.75 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++|+|.|+ |.+|+.++..|.+.|. +|++..|... +...+...+. ....+..|-....+..+|+||++.+.
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~-ra~~La~~~~--~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIE-KAQKITSAFR--NASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHH-HHHHHHHHhc--CCeEecHHHHHHHhccCCEEEECcCC
Confidence 45679999995 9999999999999995 7888887532 2233333221 12344444445567789999998874
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.23 Score=49.50 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
....+|+|.|.| .|-||+.+++.|...|.+|++.+|..... ..... .++. ..+-.++.+..+|+|+.+..
T Consensus 188 ~~L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~--~~~~~---~g~~--~~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 188 YDLEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPE--EVEQE---LGLT--YHVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred eecCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCch--hhHhh---cCce--ecCCHHHHhhcCCEEEEcCC
Confidence 346788999999 69999999999999999999998753211 11110 1121 12235567788999987764
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.18 Score=47.96 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=45.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
...+++|+|+|.++.+|+.++..|.++|..|++..+.. . | ....+.++|+||...|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t----~----------------~-l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS----K----------------D-MASYLKDADVIVSAVGK 211 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----h----------------h-HHHHHhhCCEEEECCCC
Confidence 56788999999999999999999999999999987521 0 1 22346679999988874
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.9 Score=35.72 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=59.0
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYK 197 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~~ 197 (442)
+|+|.||..-.-..+-+.+.+.|.+.+...|........ -..+..+.++|.||..-..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~---------------~~l~~~i~~aD~VIv~t~~------- 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKA---------------SRLPSKIKKADLVIVFTDY------- 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccch---------------hHHHHhcCCCCEEEEEeCC-------
Confidence 489999866667778888888998877773321111110 0123345678999987653
Q ss_pred CChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 198 FNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 198 ~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
++......+-+.|++.++.++|+.+.+
T Consensus 59 --------vsH~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 59 --------VSHNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred --------cChHHHHHHHHHHHHcCCcEEEECCCC
Confidence 566677788999999999999888654
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.29 Score=50.46 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.+++|+|.| .|..|..+++.|.+.|+.|++.++..... .. .....++.+...+-....+.++|.||...|+
T Consensus 14 ~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~-~~---~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi 84 (473)
T PRK00141 14 LSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNETAR-HK---LIEVTGVADISTAEASDQLDSFSLVVTSPGW 84 (473)
T ss_pred cCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCChHHH-HH---HHHhcCcEEEeCCCchhHhcCCCEEEeCCCC
Confidence 456899999 69999999999999999999998743221 11 1122355555442222345678999998775
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.11 Score=52.72 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|+|+|+ |.+|..+++.|...| .+|++.+|..... ......+. ...+..+-....+.++|+||.+.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra-~~la~~~g---~~~i~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERA-EDLAKELG---GEAVKFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHcC---CeEeeHHHHHHHHhhCCEEEECCC
Confidence 34569999996 999999999999999 7899998854321 21222211 122333333355678999999865
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.22 Score=48.46 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=30.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
++|.|.| .|-+|+.++..|+..|++|++.++..
T Consensus 8 ~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 5899999 59999999999999999999999864
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.97 Score=41.50 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=60.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCC---Cccc---ccccc--------------CCCceeEEecc--
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTG---RKEN---VMHHF--------------GNPNFELIRHD-- 172 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~---~~~~---~~~~~--------------~~~~v~~~~~D-- 172 (442)
..+|+|+| -|++|++.++.|.+.|. +++++|-..-. -+.. +...+ -++.+++...+
T Consensus 30 ~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 34799999 58999999999999996 77777643210 0000 00000 12333332221
Q ss_pred ----cccc-ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCC
Q 013467 173 ----VVEP-LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237 (442)
Q Consensus 173 ----~~~~-~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~ 237 (442)
-.+. ...+.|.||.+. -|+..=..|+..|++.+.. ++||+++-+..
T Consensus 109 ~t~en~~~~~~~~~DyvIDai-----------------D~v~~Kv~Li~~c~~~ki~--vIss~Gag~k~ 159 (263)
T COG1179 109 ITEENLEDLLSKGFDYVIDAI-----------------DSVRAKVALIAYCRRNKIP--VISSMGAGGKL 159 (263)
T ss_pred hCHhHHHHHhcCCCCEEEEch-----------------hhhHHHHHHHHHHHHcCCC--EEeeccccCCC
Confidence 1111 334689999865 4555666789999998764 45676665543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.19 Score=48.76 Aligned_cols=53 Identities=26% Similarity=0.235 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
..|+|.|.| .|-+|+.++..|.+.||+|++.+|.... + .++.+.++|+||-+.
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------~-~~~~~~~advvi~~v 55 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRSGL-------------------S-LAAVLADADVIVSAV 55 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------C-HHHHHhcCCEEEEEC
Confidence 346899998 6999999999999999999999885320 1 223456789988765
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.72 Score=43.08 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccc-ccc----cc--CCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV-VEP----LL--LEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~-~~~----~~--~~~d~Vih~A 188 (442)
+++|+|.|||+= |+.+++.|.+.|+.|++-.-...+. .....+.+..+-+ ..+ .+ .+++.||...
T Consensus 2 ~~~IlvlgGT~e-gr~la~~L~~~g~~v~~Svat~~g~-------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDAT 73 (248)
T PRK08057 2 MPRILLLGGTSE-ARALARALAAAGVDIVLSLAGRTGG-------PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDAT 73 (248)
T ss_pred CceEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCCC-------cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECC
Confidence 568999999874 9999999999999888766543332 1123445555555 222 22 3689999865
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
-+ -...-+.++.++|++.+..++
T Consensus 74 HP---------------fA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 74 HP---------------YAAQISANAAAACRALGIPYL 96 (248)
T ss_pred Cc---------------cHHHHHHHHHHHHHHhCCcEE
Confidence 22 223457789999999996433
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.57 Score=51.74 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc------------------ccc--CCC--ceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM------------------HHF--GNP--NFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~------------------~~~--~~~--~v~~~ 169 (442)
+.+..+|+|.| -|+||+.++..|...|. +++++|.+.-....-.. ..+ -++ +++.+
T Consensus 329 kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 329 RLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 44566899999 68999999999999996 77777654211100000 000 012 33444
Q ss_pred eccc----cccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 170 RHDV----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 170 ~~D~----~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
...+ .+..+.++|+||.+.- . ..+..-..+.+.|.+.++.+|+.++.+.+|
T Consensus 408 ~~~I~~en~~~fl~~~DiVVDa~D-----~----------~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 408 PEGVAAETIDAFLKDVDLLVDGID-----F----------FALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred ecCCCHHHHHHHhhCCCEEEECCC-----C----------ccHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 3333 2234668999997541 1 112233456777888898999888755443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.22 Score=47.61 Aligned_cols=58 Identities=26% Similarity=0.240 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
....+++|.|.|.+|.+|+.++..|+++|+.|++..+... + ..+....+|+||-+.|.
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------------~-l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------------D-AKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------------C-HHHHHhcCCEEEEecCC
Confidence 3567889999999999999999999999999999866321 1 22334568999988763
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.57 Score=50.27 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc------------------c----ccCCCceeEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM------------------H----HFGNPNFELI 169 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~------------------~----~~~~~~v~~~ 169 (442)
+.+..+|+|.| .|+||++++..|...|. +++++|.+.-......+ . .-...+++.+
T Consensus 40 kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 40 RLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 34556899999 69999999999999996 77777643211100000 0 0011234444
Q ss_pred eccccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecC
Q 013467 170 RHDVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 170 ~~D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
...+.+ ..+.++|+||.+.- . ..+..-..+.+.|.+.++.+|+.+..
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D-----~----------~~~~~r~~l~~~c~~~~iP~i~~g~~ 169 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLD-----F----------FQFEIRRTLFNMAREKGIPVITAGPL 169 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCC-----C----------CcHHHHHHHHHHHHHCCCCEEEeecc
Confidence 444432 34568999996541 0 11222335677899988888876643
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.88 Score=41.07 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
.+.++|+|.|+ |.+|+.++..|.+.|. +|+++|.+
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34458999996 8899999999999998 79999876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.32 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
|+|.|.| .|.+|+.++..|++.|++|++.+++..
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799998 699999999999999999999998643
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.81 Score=49.20 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
..++|+|.|.| .|.+|+.+++.|.+.|++|++.+|+
T Consensus 49 ~~~~~kIgIIG-~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 49 NTTQLKIAIIG-FGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred cCCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34567999999 7999999999999999999999885
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.24 Score=47.82 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|.|.| .|-||+.+++.|..-|.+|++.+|.... . .+... .+-.++.+.++|+|+.+..
T Consensus 119 ~L~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~--~---------~~~~~-~~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 119 LLYNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVN--D---------GISSI-YMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcc--c---------Ccccc-cCCHHHHHhhCCEEEECCC
Confidence 46788999999 7999999999887779999999875221 1 11100 1234556778999998764
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.77 Score=37.48 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=49.0
Q ss_pred CEEEEEcCC---chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 117 LRIVVTGGA---GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 117 ~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
|+|.|.|++ +-.|..+++.|.+.|++|+.+.-. ..... +.. .-.++.+ .-..+|.++-+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~----~~~i~------G~~-~y~sl~e-~p~~iDlavv~~----- 63 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPK----GGEIL------GIK-CYPSLAE-IPEPIDLAVVCV----- 63 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTT----CSEET------TEE--BSSGGG-CSST-SEEEE-S-----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCC----ceEEC------cEE-eeccccC-CCCCCCEEEEEc-----
Confidence 479999987 778999999999999999998431 11111 111 1122333 235688888653
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeec
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS 230 (442)
+-..+..+++.|.+.|+ .+++.++
T Consensus 64 -------------~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 64 -------------PPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp --------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -------------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 33345568888888897 6777765
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.3 Score=46.20 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
||+|.|.| .|.+|+.+++.|.+.+ .++..++.....+.+..... .+... ..|. ++.+.++|+|+.++.
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~---~~~~~-~~~~-~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK---TGAKA-CLSI-DELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh---cCCee-ECCH-HHHhcCCCEEEEcCC
Confidence 46899999 6999999999998863 56554443222221211111 11111 1222 333478999999874
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.15 Score=51.79 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++|+|+|+ |.+|..+++.|...|. +|++.+|..... ..+...+. .+.+..+-....+.++|+||.+.+.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra-~~la~~~g---~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERA-EELAEEFG---GEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHcC---CcEeeHHHHHHHhccCCEEEECCCC
Confidence 45579999995 9999999999999997 788888853221 22222221 1233333233456789999998753
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.65 Score=43.96 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=52.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
|++|.|.|. |.+|+.+++.|.+. +.++..+..... ..+........ .+. +..|+.+- ..++|+|+-+++..
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~-~~~~~~~~~~~-~~~-~~~d~~~l-~~~~DvVve~t~~~--- 72 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEH-SIDAVRRALGE-AVR-VVSSVDAL-PQRPDLVVECAGHA--- 72 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCC-CHHHHhhhhcc-CCe-eeCCHHHh-ccCCCEEEECCCHH---
Confidence 469999997 99999999999886 456665553211 11111111111 122 12233222 35699999988521
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
....++..+.++|+.++..|.
T Consensus 73 ---------------~~~e~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 73 ---------------ALKEHVVPILKAGIDCAVISV 93 (265)
T ss_pred ---------------HHHHHHHHHHHcCCCEEEeCh
Confidence 123456666677877665554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.14 Score=49.83 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
||+|.|.| .|.+|..++..|.+.|++|++++|+.
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 57899999 59999999999999999999999853
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.32 Score=47.71 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|.|.| .|-||+.+++.|...|.+|++.+|..... .... ..+.+ +-.++.+.++|+|+.+..
T Consensus 147 ~L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~---~~~~~---~~l~ell~~aDiV~l~lP 213 (333)
T PRK13243 147 DVYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPE---AEKE---LGAEY---RPLEELLRESDFVSLHVP 213 (333)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChh---hHHH---cCCEe---cCHHHHHhhCCEEEEeCC
Confidence 46788999999 69999999999999999999998753211 1100 11221 224456778999998764
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.14 Score=49.75 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|+|.|+ |-+|..+++.|...| .+|++.+|..... ..+...+. ...+..+-....+.++|+||.+.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra-~~la~~~g---~~~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERA-EELAKELG---GNAVPLDELLELLNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHcC---CeEEeHHHHHHHHhcCCEEEECCC
Confidence 35679999996 999999999999876 6888888753222 22222222 233333333445677999999876
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.4 Score=37.36 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=41.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCC---CeEEEE-eCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARG---DSVIVV-DNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g---~~V~~l-~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
||.|.| +|-+|..|++.|++.| ++|++. .|+.+ +...+... ..+.+...+ ..+.+..+|+||.+.
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~-~~~~~~~~---~~~~~~~~~-~~~~~~~advvilav 69 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPE-KAAELAKE---YGVQATADD-NEEAAQEADVVILAV 69 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHH-HHHHHHHH---CTTEEESEE-HHHHHHHTSEEEE-S
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHH-HHHHHHHh---hccccccCC-hHHhhccCCEEEEEE
Confidence 477785 8999999999999999 899966 55332 22222222 123333322 334555799999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.93 Score=45.43 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=27.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|.| .|++|..++..|. .||+|++++++.
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~ 32 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIA-QNHEVVALDILP 32 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCH
Confidence 4799998 7999999996665 599999999864
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.51 Score=46.40 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=56.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccc---------------cCCCceeEEeccccccccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHH---------------FGNPNFELIRHDVVEPLLL 179 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~---------------~~~~~v~~~~~D~~~~~~~ 179 (442)
|++|.|.|. |-+|+.+++.+.++ +.+|+++.-........+... +.... +...+..+..+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~--i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAG--IPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCc--eEEcCChhHhhc
Confidence 458999998 99999999988876 457777764222111100000 00011 111122333456
Q ss_pred CCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecC
Q 013467 180 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
++|+||-+.+.. .....++.+.++|+++|+-++.
T Consensus 78 ~vDVVIdaT~~~------------------~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 78 KADIVVDATPGG------------------VGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred cCCEEEECCCch------------------hhHHHHHHHHHCCCEEEEcCCC
Confidence 799999887531 1234567778888888877764
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.097 Score=52.10 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeE--EeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL--IRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~--~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.+.+|+|+|+ |-+|...++.|...|.+|++++|+... .+.....+.. .+.. .+.+...+.+.++|+||++++.
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~-~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDR-LRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHH-HHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 3457999986 999999999999999999999885321 1111111111 1111 1112233456789999998753
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.21 Score=48.09 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+|+|.|.| .|.+|+.++..|.+.|++|++.+|+...... .. ..++. ..+-.++.+.++|+||-+.
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~-~~----~~g~~--~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAE-VI----AAGAE--TASTAKAVAEQCDVIITML 66 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-HH----HCCCe--ecCCHHHHHhcCCEEEEeC
Confidence 35899999 6999999999999999999998875322111 11 11111 1122334567899999875
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.17 Score=52.16 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++++|+|+ |.+|+.++..|.+.|++|++.+|..... +.+..... ......+-. ..+.++|+|||+...
T Consensus 330 ~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~-~~la~~~~---~~~~~~~~~-~~l~~~DiVInatP~ 400 (477)
T PRK09310 330 LNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHA-EALASRCQ---GKAFPLESL-PELHRIDIIINCLPP 400 (477)
T ss_pred cCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc---cceechhHh-cccCCCCEEEEcCCC
Confidence 35679999995 8999999999999999999888753221 11211111 111111111 124679999998753
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.2 Score=50.24 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+|+|||||+...+|-.+++.|.+.|++|++++..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46799999999999999999999999999999875
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.34 Score=36.48 Aligned_cols=33 Identities=33% Similarity=0.614 Sum_probs=29.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
+|+|.| .|++|-.++..|.+.|.+|+++.|...
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 578888 599999999999999999999988643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.62 Score=35.66 Aligned_cols=34 Identities=35% Similarity=0.563 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDN 148 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r 148 (442)
...++++|.|. |.+|+.++..|.+. +.+|++.+|
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34568999997 99999999999998 567777755
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.16 Score=42.25 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=39.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.++|.|.|+ |-+|.+|.+.|.+.||.|..+........+.....+. ...+.+ .++.+..+|++|-+.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~--~~~~~~---~~~~~~~aDlv~iav 76 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG--AGAILD---LEEILRDADLVFIAV 76 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T--T--------TTGGGCC-SEEEE-S
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc--cccccc---cccccccCCEEEEEe
Confidence 458999996 9999999999999999999886432222222222211 122222 233456788888764
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.68 Score=41.97 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=50.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
++|.|.| .|.||..+++.+... +.+.++++.....+...+...+....+ .|+. +.+.++|.|+-+|++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~----s~id-e~~~~~DlvVEaAS~---- 70 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV----SDID-ELIAEVDLVVEAASP---- 70 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc----ccHH-HHhhccceeeeeCCH----
Confidence 4789999 799999998866543 355555543322222222222221111 2333 333778999988862
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecC
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
+..+....-+.++|+.+|.+|..
T Consensus 71 --------------~Av~e~~~~~L~~g~d~iV~SVG 93 (255)
T COG1712 71 --------------EAVREYVPKILKAGIDVIVMSVG 93 (255)
T ss_pred --------------HHHHHHhHHHHhcCCCEEEEech
Confidence 22334445555667766666653
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.18 Score=52.28 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|+|+|+ |.+|..+++.|...|. +|++..|.... ...+...+....+.+...+-....+.++|+||.+.+
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~er-a~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEER-VAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC
Confidence 44679999997 9999999999999996 79999886432 222222221122333344434456778999998765
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.5 Score=42.98 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=61.2
Q ss_pred cCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEe
Q 013467 108 IPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 108 ~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
+|.....++++|+|+|| |-+|..=++.|++.|.+|+++.-.. .+.+.......++.+++.+.....+.+++.||-+
T Consensus 4 lPl~~~l~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaA 79 (210)
T COG1648 4 LPLFLDLEGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAA 79 (210)
T ss_pred cceEEEcCCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEEe
Confidence 44455667789999995 9999999999999999999986432 3344444444556666644444455556666643
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g 222 (442)
. .|-.-...+.++|++.+
T Consensus 80 t-----------------~d~~ln~~i~~~a~~~~ 97 (210)
T COG1648 80 T-----------------DDEELNERIAKAARERR 97 (210)
T ss_pred C-----------------CCHHHHHHHHHHHHHhC
Confidence 2 12222345778888765
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.33 Score=46.50 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEe-CCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD-NFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|+|.|-++.+|..++..|+++|+.|++.. |.. | .++....+|+||-+.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------------~-l~e~~~~ADIVIsavg 210 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------------D-LPAVCRRADILVAAVG 210 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------------C-HHHHHhcCCEEEEecC
Confidence 46788999999999999999999999999999984 321 1 1334567899998876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 442 | ||||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 1e-118 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-114 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 2e-35 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 1e-29 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 2e-26 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 4e-26 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 7e-26 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-25 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-25 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 9e-25 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-24 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 9e-22 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 1e-21 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 2e-21 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 3e-20 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 4e-20 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 9e-20 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 1e-19 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 2e-19 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 2e-19 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-19 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 2e-19 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-19 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 3e-19 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 3e-19 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 5e-19 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 6e-19 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 7e-19 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 1e-18 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 9e-18 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 9e-18 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-17 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-17 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-17 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 1e-17 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-17 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-17 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 3e-17 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-17 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-17 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-17 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-17 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 8e-17 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-16 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 2e-16 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-15 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 1e-14 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 1e-14 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 3e-14 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 3e-14 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 3e-13 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 8e-13 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 3e-12 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 2e-11 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 3e-11 | ||
| 4b8w_A | 319 | Crystal Structure Of Human Gdp-L-Fucose Synthase Wi | 3e-10 | ||
| 4b8z_A | 320 | Crystal Structure Of Human Gdp-l-fucose Synthase Wi | 3e-10 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 5e-10 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 1e-09 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 6e-09 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 6e-09 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 7e-09 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 1e-08 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 2e-08 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 2e-08 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 3e-08 | ||
| 1e7r_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y1 | 5e-08 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 3e-07 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 4e-07 | ||
| 2zkl_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 4e-05 | ||
| 3st7_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 6e-05 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 8e-05 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 1e-04 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 2e-04 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 2e-04 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 2e-04 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 2e-04 | ||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 5e-04 | ||
| 3a9w_A | 317 | Crystal Structure Of L-Threonine Bound L-Threonine | 6e-04 |
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Gdp, Tetragonal Crystal Form Length = 319 | Back alignment and structure |
|
| >pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound Nadp And Gdp, Rhombohedral Crystal Form Length = 320 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e Length = 321 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
| >pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 442 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 0.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 0.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 1e-178 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 1e-174 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-156 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-140 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 1e-124 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 9e-95 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 1e-84 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 7e-84 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 3e-78 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 3e-77 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 4e-77 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 2e-73 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 2e-70 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 3e-70 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 4e-70 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 2e-67 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 3e-64 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 2e-63 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 3e-58 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 4e-54 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 1e-53 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 2e-49 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 3e-46 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 3e-38 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 4e-37 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 1e-36 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 2e-34 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 5e-33 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 2e-32 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 1e-30 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 1e-29 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 3e-26 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 7e-26 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 9e-22 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 5e-20 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 3e-19 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 1e-18 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 6e-18 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 2e-17 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 4e-17 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 2e-16 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 6e-16 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 2e-15 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 1e-14 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 5e-14 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 2e-11 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 5e-10 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 7e-10 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 9e-10 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 2e-09 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 4e-09 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 3e-08 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 4e-08 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 4e-08 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 8e-08 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 1e-07 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 2e-07 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 2e-07 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 3e-07 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 7e-07 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 8e-07 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 1e-06 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 1e-06 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 2e-06 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 8e-06 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 1e-05 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 2e-04 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 4e-04 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 7e-04 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 599 bits (1546), Expect = 0.0
Identities = 203/341 (59%), Positives = 248/341 (72%), Gaps = 4/341 (1%)
Query: 96 RVGFGAVNSGGKIPL----GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151
+S G+ L +++ RI++TGGAGFVGSHL D+L+ G V VVDNFFT
Sbjct: 3 SSHHHHHHSSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT 62
Query: 152 GRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 211
GRK NV H G+ NFELI HDVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GT
Sbjct: 63 GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGT 122
Query: 212 LNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271
LNMLGLAKRVGAR LL STSEVYGDP HPQ E YWG+VNPIG R+CYDEGKR AET+
Sbjct: 123 LNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCY 182
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
Y + GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VS
Sbjct: 183 AYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVS 242
Query: 332 DLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP 391
DLV GL+ LM P NLGNP E T+LE AQ+++ + ++I+F +DDP KRKP
Sbjct: 243 DLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKP 302
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGGA 432
DI +AK +LGWEP V L +GL K + FR+ + G+
Sbjct: 303 DIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQGS 343
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 508 bits (1311), Expect = 0.0
Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 39/348 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDV-- 173
+R+++ G GF+G+HL +RL+ V +D + + +P+F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 174 ----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
+E + + D + L A+P+ Y NP++ + + L ++ + R + S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 230 TSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
TSEVYG E + V P+ R Y K+ + + Y G++ + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 288 NTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341
N GPR+ I R ++ + + P+ + GKQ R F + D +E L R++
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236
Query: 342 EGEHV----GPFNLGNP-GEFTMLELAQVVQETIDPNAKI---------------EFRPN 381
E N+GNP E ++ EL +++ + + + +
Sbjct: 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGK 296
Query: 382 TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKE 429
D RKP I A L WEPK+ +++ + + + F + + K
Sbjct: 297 GYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKP 344
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 501 bits (1293), Expect = e-178
Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 44/368 (11%)
Query: 92 AYNPRVGFGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151
A++ G + + + P +K K ++++ G GF+G HL R++ D + + T
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMKAK--KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQT 59
Query: 152 GRKENVMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIK 205
R +++ H D+ VE + + D I L A+P Y P++ +
Sbjct: 60 DRLGDLVKH---ERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFE 116
Query: 206 TNVVGTLNMLGLAKRVGARFLLTSTSEVYG---DPLQHPQKETY-WGNVNPIGVRSCYDE 261
+ L ++ A + G + STSEVYG D P +G +N R Y
Sbjct: 117 LDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP--RWIYAC 174
Query: 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPL 315
K+ + + Y G+ + R FN GP + RVV+ F+ +R E +
Sbjct: 175 SKQLMDRVIWGYGM-EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENI 233
Query: 316 TVYGDGKQTRSFQFVSDLVEGLMRLME---GEHVGP-FNLGNP-GEFTMLELAQVVQE-- 368
++ G Q R+F +V D + LM+++E G G +N+GNP F++ ELA + E
Sbjct: 234 SLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELA 293
Query: 369 -------------TIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415
+ + N D R P I + LGW P+ + L ++
Sbjct: 294 AEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQI 353
Query: 416 VKDFRQRI 423
+ +R +
Sbjct: 354 FEAYRGHV 361
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 490 bits (1264), Expect = e-174
Identities = 88/327 (26%), Positives = 147/327 (44%), Gaps = 14/327 (4%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRV 83
Query: 174 VE---PLLLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+E + VD +++LA + + N + N + + NM+ A+ G RF
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 143
Query: 229 STSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
S++ +Y + Q + P + + K E L Y++ G+E RI R
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRF 203
Query: 287 FNTYGPRMCIDDGR--VVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL +
Sbjct: 204 HNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 263
Query: 344 EHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWE 403
+ P N+G+ +M E+A++V + I P + R D + KE LGW
Sbjct: 264 DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP-EGVRGRNSDNNLIKEKLGWA 322
Query: 404 PKVSLRKGLPKMVKDFRQRIFGDHKEG 430
P + L++GL +++I + +G
Sbjct: 323 PNMRLKEGLRITYFWIKEQIEKEKAKG 349
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 446 bits (1150), Expect = e-156
Identities = 89/349 (25%), Positives = 144/349 (41%), Gaps = 28/349 (8%)
Query: 100 GAVNSGGKIPLGLKRKGL---RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKE 155
G V G +P+ + L ++V GGAGFVGS+LV RL+ G + V VVDN + K
Sbjct: 13 GLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI 72
Query: 156 NVMHHFGNPNFELIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVG 210
NV H P + + L E D ++HLA +P+ + N +
Sbjct: 73 NVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLT 129
Query: 211 TLNMLGLAKRVGA--RFLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267
TL + K + + ++ + + V+ S Y K E
Sbjct: 130 TLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGE 189
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR-----------VVSNFVAQALRKEPLT 316
++ YH+ + AR N YGP + GR V F+ +AL+ PL
Sbjct: 190 FYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLP 249
Query: 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK 375
+ G TR F FV D+ GL+ G +N+ + E ++ +LA + E N +
Sbjct: 250 LENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTE 309
Query: 376 IEFRPN-TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
++ P D+ KR +A+ LG+ VS+ GL K ++ + +
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 403 bits (1039), Expect = e-140
Identities = 83/319 (26%), Positives = 141/319 (44%), Gaps = 20/319 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN---VMHHFGNPNFELIRHDVV 174
RI++TGGAGF+G HL L+A G+ V V+D+ P EL D+
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS 68
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 233
+ V +YHLA S P+ + NV ++L L VG + ++ ST EV
Sbjct: 69 D-----VRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGSTCEV 122
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE-VRIARIFNTYGP 292
YG P E +P+ RS Y K E + + R + V I R FN YGP
Sbjct: 123 YGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGP 177
Query: 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 352
+V A L + L V GDG+Q R F +++D+V+ L+ L N G
Sbjct: 178 GE--RPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVVNFG 235
Query: 353 NPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP-KVSLRKG 411
+ ++ ++ +++Q T P A++ + ++ + + D + +G + + +G
Sbjct: 236 SGQSLSVNDVIRILQAT-SPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEG 294
Query: 412 LPKMVKDFRQRIFGDHKEG 430
+ ++ ++ R D ++
Sbjct: 295 IRLTLEWWQSRDLDDIRQR 313
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 363 bits (933), Expect = e-124
Identities = 100/324 (30%), Positives = 148/324 (45%), Gaps = 29/324 (8%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RIVVTGGAGF+GSHLVD+L+ G V+VVDN +GR+E V NP+ EL D+ +
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYS 56
Query: 178 LLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 233
D ++H A P+ NVV T N+L A++ G + S+S V
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YGD P E P S Y K E + Y R GV R N GPR
Sbjct: 117 YGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 294 MCIDDGRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-----GEHVG 347
+ V+ +F+ + R L V GDG Q +S+ +V D VE + +
Sbjct: 172 L---RHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFL 228
Query: 348 PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED------DPHKRKPDISRAKELLG 401
N+GN +L++AQ+V E + +I P+T D D +++ +L G
Sbjct: 229 ALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTG 288
Query: 402 WEPKVSLRKGLPKMVKDFRQRIFG 425
W P ++ + + K +D + ++G
Sbjct: 289 WRPTMTSAEAVKKTAEDLAKELWG 312
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 9e-95
Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 26/311 (8%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I VTGG GF+G ++V+ + G++ I++ + N ++E D
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIN--------DYEYRVSDYTLED 55
Query: 178 LLE----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSE 232
L+ VD + HLA + N + T N+ + + ST
Sbjct: 56 LINQLNDVDAVVHLAATRG-SQG---KISEFHDNEILTQNLYDACYENNISNIVYASTIS 111
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
Y D P E P Y K E + Y R G+ ++ R + YG
Sbjct: 112 AYSDETSLPWNEKEL--PLPD---LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGF 166
Query: 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNL 351
+ +++ F QA E LT++ + R F + D + ++ ++ E V FN+
Sbjct: 167 NE--KNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTFNI 224
Query: 352 GNPGEFTMLELAQVVQETIDPNAKIEFR-PNTEDDPHKRKPDISRAKELLGWEPKVSLRK 410
G+ T E+A + + + PN + H D S+AKELL + +
Sbjct: 225 GSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284
Query: 411 GLPKMVKDFRQ 421
+ ++ R
Sbjct: 285 AVEEIHLLMRG 295
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 260 bits (668), Expect = 1e-84
Identities = 85/323 (26%), Positives = 148/323 (45%), Gaps = 31/323 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
IVVTGGAGF+GSH+VD+L + ++V+DN +G +E V N L++ D+
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEFV-----NEAARLVKADLAADD 56
Query: 178 LLE----VDQIYHLAC----PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLT 228
+ + ++++H+A NP + + NV+ T +L ++ G R + T
Sbjct: 57 IKDYLKGAEEVWHIAANPDVRIGAE----NPDEIYRNNVLATYRLLEAMRKAGVSRIVFT 112
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
STS VYG+ P E Y +PI S Y K E L Y ++ I R N
Sbjct: 113 STSTVYGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVG 347
G R G + + E L + G+G+Q +S+ ++SD V+ ++ + E V
Sbjct: 168 VIGRRS--THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVN 225
Query: 348 PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED---DPHKRKPDISRAKELLGWEP 404
FN+G+ + + +A++V E + + + F D I + K LGW+P
Sbjct: 226 IFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKP 284
Query: 405 KVSLRKGLPKMVKDFRQRIFGDH 427
+ + + + V+D + + +
Sbjct: 285 RYNSEEAVRMAVRDLVEDLDEEG 307
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 7e-84
Identities = 79/332 (23%), Positives = 140/332 (42%), Gaps = 27/332 (8%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH------HFGNPN 165
L + ++TG AGF+GS+L++ L+ V+ +DNF TG + N+ N
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN 82
Query: 166 FELIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 220
F+ I+ D+ VD + H A S +P+ + TN+ G LNML A+
Sbjct: 83 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 142
Query: 221 VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
F ++S YGD P+ E G P+ S Y K E + R G
Sbjct: 143 AKVQSFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGF 197
Query: 280 EVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN +G R + V+ + + ++ + + + GDG+ +R F ++ + V+
Sbjct: 198 STIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 257
Query: 338 MRLMEGEHVGP---FNLGNPGEFTMLELAQVVQETIDPNA-----KIEFRPNTEDDPHKR 389
+ +N+ G ++ +L +++ + N + +R E D
Sbjct: 258 LLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHS 317
Query: 390 KPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
DIS+A +LLG+ PK + G+ + +
Sbjct: 318 LADISKAAKLLGYAPKYDVSAGVALAMPWYIM 349
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 3e-78
Identities = 86/329 (26%), Positives = 135/329 (41%), Gaps = 33/329 (10%)
Query: 104 SGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN 163
S G +P G K ++ +TG G +GSH+ + L+ RGD V+ +DNF TGR+E++ H
Sbjct: 11 SSGLVPRGSHMK--KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH--- 65
Query: 164 PNFELIRHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLG 216
PN + + + L+ D + H A + TN VG N++
Sbjct: 66 PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPD---DWYNDTLTNCVGGSNVVQ 122
Query: 217 LAKRVGA-RFLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274
AK+ RF+ T+ YG P+Q P + + NP S Y K E Y
Sbjct: 123 AAKKNNVGRFVYFQTALCYGVKPIQQPVRLDH--PRNPA--NSSYAISKSANED----YL 174
Query: 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+G++ R+ N GPR + F + + V K R F FV DL
Sbjct: 175 EYSGLDFVTFRLANVVGPRNVSG---PLPIFFQRLSEGKKCFV---TKARRDFVFVKDLA 228
Query: 335 EGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQET--IDPNAKIEFRPNTEDDPHKRKPD 392
+R ++G G ++ + + + EL V E + + E R DD D
Sbjct: 229 RATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLD 288
Query: 393 ISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
SR + G L++ + V FR+
Sbjct: 289 PSRTIQDFGKIEFTPLKETVAAAVAYFRE 317
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 3e-77
Identities = 83/333 (24%), Positives = 147/333 (44%), Gaps = 29/333 (8%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH------HFGNPN 165
L ++TG AGF+GS+L+++L+ VI +DNF TG + N+
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 166 FELIRHDV-----VEPLLLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAK 219
F I D+ E ++ VD + H A S V +P+ T TN+ G LN+L AK
Sbjct: 81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGS-VPRSIVDPITTNATNITGFLNILHAAK 139
Query: 220 RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
F ++S YGD P+ E G NP+ S Y K E Y R G
Sbjct: 140 NAQVQSFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYG 194
Query: 279 VEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336
+ R FN +G R + V+ + A L+ + + + GDG+ +R F ++ ++++
Sbjct: 195 FKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQM 254
Query: 337 LMRLMEGEHVGP---FNLGNPGEFTMLELAQVVQETID-----PNAKIEFRPNTEDDPHK 388
+ + +N+ T+ EL+ + + ++ I++R D
Sbjct: 255 NILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRH 314
Query: 389 RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
+ D+++A +LL + P + +R+GL + + +
Sbjct: 315 SQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 4e-77
Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 39/350 (11%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFE 167
P R+ R+++ G GF+G+HL +RL+ V +D + + +P+F
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI----GSDAISRFLNHPHFH 363
Query: 168 LIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 221
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 364 FVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 423
Query: 222 GARFLLTSTSEVYGDPLQHPQKETYWGNV-NPIG-VRSCYDEGKRTAETLTMDYHRGAGV 279
R + STSEVYG E + + P+ R Y K+ + + Y G+
Sbjct: 424 RKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGL 483
Query: 280 EVRIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333
+ + R FN GPR+ I R ++ + + P+ + GKQ R F + D
Sbjct: 484 QFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDG 543
Query: 334 VEGLMRLMEGEHVGP----FNLGNPG-EFTMLELAQVVQETIDPNAKIEFRPNTE----- 383
+E L R++E N+GNP E ++ EL +++ + + + P
Sbjct: 544 IEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVV 603
Query: 384 ----------DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A L WEPK+ +++ + + + F + +
Sbjct: 604 ESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 2e-73
Identities = 71/347 (20%), Positives = 136/347 (39%), Gaps = 34/347 (9%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDS--VIVVDNFFTGRKENVMH--------HFGNP 164
+ I++TGGAGFVGS+L V+V+D F + + +
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 165 NFELIRHDVVEPLLLE------VDQIYHL-ACPASPVHYKFNPVKTIKTNVVGTLNMLGL 217
E+I D+ PL L D ++H A + + N +KTN LN+L +
Sbjct: 69 KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTML---NQELVMKTNYQAFLNLLEI 125
Query: 218 AKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
A+ A+ + S++ VYG+ + P N +P + Y K + + +
Sbjct: 126 ARSKKAKVIYASSAGVYGNT-KAPNVVGK--NESPE---NVYGFSKLCMDEFVLSHS--N 177
Query: 278 GVEVRIARIFNTYGPRMCIDDGR---VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
R FN YGPR + +V A+ + + ++ G+Q R F ++ D++
Sbjct: 178 DNVQVGLRYFNVYGPRE-FYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVI 236
Query: 335 EGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED-DPHKRKPDI 393
+ ++ M+ + G +N+G + E+ +++E + + K+ + N + I
Sbjct: 237 QANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHI 295
Query: 394 SRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGGAGATPDTTS 440
L + P L G+ + G +G + +
Sbjct: 296 EPTILDLDYTPLYDLESGIKDYLPHIHAIFKGQRAKGELNSKLEGKP 342
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-70
Identities = 68/324 (20%), Positives = 125/324 (38%), Gaps = 35/324 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
I+VTG +G +G+ LV L + G ++ + + I DV
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52
Query: 178 LLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 229
++ +D I+HLA S + +P K N+ GT N+L AK+ + ++ S
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILS-AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
T V+G + ++ R+ + K AE L Y+ G++VR R
Sbjct: 112 TIGVFGPETPKNKVP----SITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 290 YGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG 347
+ G A+++E Y + ++ D ++ L+ L E +
Sbjct: 168 ISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDK 227
Query: 348 -----PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP---DISRAKEL 399
+N+ FT EL ++E I P +IE++ + D P D S A
Sbjct: 228 LVLRNGYNVTA-YTFTPSELYSKIKERI-PEFEIEYKEDFRDKIAATWPESLDSSEASNE 285
Query: 400 LGWEPKVSLRKGLPKMVKDFRQRI 423
G+ + L + + M+ +++
Sbjct: 286 WGFSIEYDLDRTIDDMIDHISEKL 309
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-70
Identities = 64/316 (20%), Positives = 119/316 (37%), Gaps = 22/316 (6%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
I+VTGGAGF+GS++V L +G + ++VVDN G K + N + + D + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 178 LLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232
+ V+ I+H +S + + + N + +L FL S++
Sbjct: 61 MAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASSAA 118
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
YG + P+ + Y K + A ++ R FN YGP
Sbjct: 119 TYGGRTSDFIESR--EYEKPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGP 173
Query: 293 RMCIDD--GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPF 349
R V + Q + P G R F +V D+ + + +E G F
Sbjct: 174 REGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIF 233
Query: 350 NLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP----DISRAKELLGWEPK 405
NLG + +A +IE+ P + + + D++ + +P
Sbjct: 234 NLGTGRAESFQAVADATLA-YHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPF 292
Query: 406 VSLRKGLPKMVKDFRQ 421
++ +G+ + + +
Sbjct: 293 KTVAEGVTEYMAWLNR 308
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 4e-70
Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 22/320 (6%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
+G I+VTGGAGF+GS++V L +G + ++VVDN G K + N + + D
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDF 103
Query: 174 VEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
+ ++ V+ I+H +S + + + N + +L FL
Sbjct: 104 LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYA 161
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S++ YG + P+ + + K + A ++ R FN
Sbjct: 162 SSAATYGGRTSDFIESRE--YEKPL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYFN 216
Query: 289 TYGPRMCIDD--GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345
YGPR V + Q + P G R F +V D+ + + +E
Sbjct: 217 VYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 276
Query: 346 VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED----DPHKRKPDISRAKELLG 401
G FNLG + +A +IE+ P + + D++ +
Sbjct: 277 SGIFNLGTGRAESFQAVADATLA-YHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 335
Query: 402 WEPKVSLRKGLPKMVKDFRQ 421
+P ++ +G+ + + +
Sbjct: 336 DKPFKTVAEGVTEYMAWLNR 355
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-67
Identities = 55/321 (17%), Positives = 109/321 (33%), Gaps = 32/321 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+I++ G G +G+ L +L G ++ + + V + + ++
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV------NSGPFEVVNALDF 57
Query: 177 LLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+E + IY +A S + NP N+ ++L LAK +
Sbjct: 58 NQIEHLVEVHKITDIYLMAALLS-ATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWP 116
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S+ V+G + + Y K+ E YH GV+VR R
Sbjct: 117 SSIAVFGPTTPKENTP----QYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPG 172
Query: 289 TYGPRMCIDDGR--VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME---- 342
G + +A+ + + + ++ D ++ + +M+
Sbjct: 173 LISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVE 232
Query: 343 -GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKP---DISRAKE 398
+ +NL FT E+A +++ I P I + P+ P D S+A+E
Sbjct: 233 KIKIHSSYNLA-AMSFTPTEIANEIKKHI-PEFTITYEPDFRQKIADSWPASIDDSQARE 290
Query: 399 LLGWEPKVSLRKGLPKMVKDF 419
W+ L M++
Sbjct: 291 DWDWKHTFDLESMTKDMIEHL 311
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 3e-64
Identities = 90/326 (27%), Positives = 141/326 (43%), Gaps = 36/326 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R++VTGGAGF+GSH+V+ L+ARG V V+DN TG++ENV R D+ +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKE 56
Query: 178 LLE-------VDQIYHLAC----PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RF 225
+E + H A S V +PV + N++G LN+L ++ G +
Sbjct: 57 GVERAFREFRPTHVSHQAAQASVKVS-VE---DPVLDFEVNLLGGLNLLEACRQYGVEKL 112
Query: 226 LLTSTSE-VYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
+ ST +YG+ P +ET+ P S Y K E Y + G++
Sbjct: 113 VFASTGGAIYGEVPEGERAEETW--PPRPK---SPYAASKAAFEHYLSVYGQSYGLKWVS 167
Query: 284 ARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYG-----DGKQTRSFQFVSDLVEGL 337
R N YGPR + VV+ F + L+ P+T+Y D R + +V D+ E
Sbjct: 168 LRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAH 227
Query: 338 MRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAK 397
+ G +N+G T E+ V E +++ P D + +
Sbjct: 228 ALALFSLE-GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLM 286
Query: 398 ELLGWEPKVSLRKGLPKMVKDFRQRI 423
GW PKV ++G+ V FR +
Sbjct: 287 A-HGWRPKVGFQEGIRLTVDHFRGAV 311
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 2e-63
Identities = 61/307 (19%), Positives = 99/307 (32%), Gaps = 52/307 (16%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
IV+TG GFVG +L L + D + V + + +E
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELES 42
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236
LL+ D I HLA P + + NV ++L + R + + +S +
Sbjct: 43 ALLKADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
NP Y E K E L +Y G V I R N +G
Sbjct: 99 QD------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKP 140
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV---GPFNLGN 353
+ V++ F + R E + V D + +V D+V + R +EG G + N
Sbjct: 141 NYNSVIATFCYKIARNEEIQVN-DRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPN 199
Query: 354 PGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413
+ T+ E+ ++ + + L + P L
Sbjct: 200 VFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLF------EKDLYSTYLSYLPSTDFSYPLL 253
Query: 414 KMVKDFR 420
V D
Sbjct: 254 MNVDDRG 260
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-58
Identities = 81/340 (23%), Positives = 130/340 (38%), Gaps = 43/340 (12%)
Query: 103 NSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG 162
+S G +P G +RI++TGGAG +GS+L++ + +G ++V+DNF TG++E +
Sbjct: 10 HSSGLVPRG---SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV-- 64
Query: 163 NPNFELIRHDVVEPLLLE-------VDQIYHLA----CPASPVHYKFNPVKTIKTNVVGT 211
+I V + LLE + H A P TNV G+
Sbjct: 65 -AGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAED-------AATNVQGS 116
Query: 212 LNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270
+N+ A + G R L T+ YG P P P + Y K E
Sbjct: 117 INVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDS-----PTAPFTSYGISKTAGEAFL 171
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
M V V R+ N GPR+ I G + F + + + R F +
Sbjct: 172 MMS----DVPVVSLRLANVTGPRLAI--G-PIPTFYKRLKAGQK--CFCSD-TVRDFLDM 221
Query: 331 SDLVEG-LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQET--IDPNAKIEFRPNTEDDPH 387
SD + + L EG G FN+ ++ E+ VV + + DD
Sbjct: 222 SDFLAIADLSLQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVP 281
Query: 388 KRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDH 427
D S+ + GW+ KV + + + + + D
Sbjct: 282 SVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYGVTDI 321
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-54
Identities = 70/341 (20%), Positives = 117/341 (34%), Gaps = 49/341 (14%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARG-------DSVIVVDNFFTGRKENVMHHFGNP 164
L +G+ I + G AG VG L RL+ G + ++D F +
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SG 64
Query: 165 NFELIRHDVVEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+ D+ P E D I+HLA S + K + N+ GT +
Sbjct: 65 AVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAI 123
Query: 219 KRVGA------RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272
+ R + TS+ V+G PL +P + + P+ + Y K E L D
Sbjct: 124 RIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPL---TSYGTQKAICELLLSD 178
Query: 273 YHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
Y R + R+ + SN + + L + +
Sbjct: 179 YSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASP 238
Query: 331 SDLVEGLMRLME--GEHVGP-FNLGNPGE-FTMLELAQVVQETI--DPNAKIEFRPNTED 384
V L+ E VGP NL PG T+ E + +++ A I P +
Sbjct: 239 RSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREP---N 295
Query: 385 DPHKR-------KPDISRAKELLGWEPKVSLRKGLPKMVKD 418
+ R + RA+E LG+ + S + + ++D
Sbjct: 296 EMIMRMCEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIED 335
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-53
Identities = 75/374 (20%), Positives = 114/374 (30%), Gaps = 70/374 (18%)
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM-------------- 158
G R++V GG G+ G L + V +VDN ++ +
Sbjct: 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67
Query: 159 ----HHFGNPNFELIRHDVVEPLLLE-------VDQIYHLACPASP-----VHYKFNPVK 202
+ EL D+ + L D + H + + V
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125
Query: 203 TIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGDPLQHPQKETY---------WGNVN 251
T NV+GTLN+L K + T YG P +E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTP-NIDIEEGYITITHNGRTDTLPY 184
Query: 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM---------------CI 296
P S Y K + G+ YG +
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP----FNLG 352
G ++ F QA PLTVYG G QTR + + D V+ + + FN
Sbjct: 245 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQF 304
Query: 353 NPGEFTMLELAQVVQE-----TIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVS 407
+F++ ELA +V + +D P E + H ++ E LG EP
Sbjct: 305 T-EQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYL 362
Query: 408 LRKGLPKMVKDFRQ 421
L ++ Q
Sbjct: 363 SDSLLDSLLNFAVQ 376
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-49
Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 56/344 (16%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF-TGRKENVMHHFGNPNFELIRHDV--- 173
++++TGG GF+GS+L +++G +IV DN G +N+ NFE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 174 --VEPLLLE--VDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAKR--VGAR 224
V L+ + D +HL A V NP + NV GTLN+L ++
Sbjct: 63 NDVTRLITKYMPDSCFHL---AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 119
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEG------------KRTAETLTMD 272
+ +ST++VYGD L+ + + + YDE K A+ +D
Sbjct: 120 IIYSSTNKVYGD-LEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 273 YHRGAGVEVRIARIFNTYGPR-MCIDDGRVVSNFVAQALRK-----EPLTVYGDGKQTRS 326
Y R G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 179 YARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRD 238
Query: 327 FQFVSDLVEGLMRLME------GEHVGPFNLG--NPGEFTMLELAQVVQETIDPNAKIEF 378
D++ + G FN+G ++LEL +++++ + + +
Sbjct: 239 VLHAEDMISLYFTALANVSKIRGN---AFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTN 295
Query: 379 ---RPNTEDDPHKRK--PDISRAKELLGWEPKVSLRKGLPKMVK 417
R + +R DI + + W PKVS + G+ KM
Sbjct: 296 LPVRES-----DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 334
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-46
Identities = 52/229 (22%), Positives = 82/229 (35%), Gaps = 39/229 (17%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTG AG VGS + L V + D G E + E++ D+
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA--------HEEIVACDLADAQ 55
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPV-KTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
V L+ + D I HL + P ++ N++G N+ A+ +G R + S+
Sbjct: 56 AVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFASS 110
Query: 231 SEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
+ G + + +T P S Y K E L Y+ +E RI + +
Sbjct: 111 NHTIGYYPRTTRIDTEVP-RRPD---SLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCF 166
Query: 291 GPRMCIDDGR----VVSNFVAQALRKEPL--------TVYGDGKQTRSF 327
D R +S L K VYG T S+
Sbjct: 167 PKPK---DARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTESW 212
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-38
Identities = 44/226 (19%), Positives = 74/226 (32%), Gaps = 33/226 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTG AG +G + +RL + + + D + PN E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL------SPLDPA--GPNEECVQCDLADAN 56
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V ++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFEQI--LQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
G P P Y K E L Y G E + RI +
Sbjct: 113 HTIGYYPQTERLGPDV-----PARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCT 167
Query: 291 GPRM------CIDDGRVVSNFVAQALRKEPL---TVYGDGKQTRSF 327
+ + R L V+G +
Sbjct: 168 PEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGW 213
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 4e-37
Identities = 55/339 (16%), Positives = 102/339 (30%), Gaps = 50/339 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+ V G G +G H + A G +++ R + + E ++++
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVL-----IHRPSSQIQRLAYLEPECRVAEMLDHA 69
Query: 178 LLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
LE +D + A + + + + T + R L ++
Sbjct: 70 GLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127
Query: 232 EVYG-DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
P P E + + P G +S Y K + + R G+ V I
Sbjct: 128 YAMPRHPQGLPGHEGLFYDSLPSG-KSSYVLCKWALDEQAREQAR-NGLPVVIGIPGMVL 185
Query: 291 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PF 349
G D G + E +T Y G R+ ++ GL+ +E +G +
Sbjct: 186 GEL---DIGPTTGRVITAIGNGE-MTHYVAG--QRNVIDAAEAGRGLLMALERGRIGERY 239
Query: 350 NLGNPGEFTMLELAQVVQETIDPNAKIEF----------------------RPNTEDD-- 385
L M +L + + E + A E
Sbjct: 240 LLTG-HNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIE 298
Query: 386 --PHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQR 422
+ D +A+E LG+ +L L + + FR
Sbjct: 299 VMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDN 337
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-36
Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 38/323 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG------DSVIVVDNF-FTGRKENVMHHFGNPNFELIR 170
R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 171 HDV-----VEPLLLEVDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNMLGLAKR 220
D+ + L VD I H A A S V +TNV GT +L A
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFA--AESHVDRSIA---GASVFTETNVQGTQTLLQCAVD 116
Query: 221 VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
G R + ST++VYG + W +P+ S Y K ++ + YHR G+
Sbjct: 117 AGVGRVVHVSTNQVYGS-IDSG----SWTESSPLEPNSPYAASKAGSDLVARAYHRTYGL 171
Query: 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339
+VRI R N YGP + +++ FV L L +YGDG R + D G+
Sbjct: 172 DVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 340 LMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDP-HKRK--PDIS 394
++ G G +++G E T EL ++ +++ + + D H + D
Sbjct: 230 VLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRK---VADRKGHDLRYSLDGG 286
Query: 395 RAKELLGWEPKVSLRKGLPKMVK 417
+ + LG+ P+VS GL + V+
Sbjct: 287 KIERELGYRPQVSFADGLARTVR 309
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 55/330 (16%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV- 173
+++VTGG GF+GS+ + ++ + VI +D + N+ +P + ++ DV
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVA 64
Query: 174 ----VEPLLLEVDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNMLGLAKR--VG 222
V+ L+ +VD + HLA A S V +P + +NV+GT +L +R
Sbjct: 65 DYELVKELVRKVDGVVHLA--AESHVDRSIS---SPEIFLHSNVIGTYTLLESIRRENPE 119
Query: 223 ARFLLTSTSEVYGDPLQHPQ-KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
RF+ ST EVYGD + E + + S Y K ++ L + + R +
Sbjct: 120 VRFVHVSTDEVYGD-ILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNA 173
Query: 282 RIARIFNTYG---------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
I R N YG P+ I +A + +YG GK R + +V D
Sbjct: 174 SITRCTNNYGPYQFPEKLIPKTII-----------RASLGLKIPIYGTGKNVRDWLYVED 222
Query: 333 LVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDP-HKR 389
V + ++ +N+ E T LE+ +++ + + IE ED P H
Sbjct: 223 HVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIEL---VEDRPGHDL 279
Query: 390 K--PDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D + L W PK + +G+ K +
Sbjct: 280 RYSLDSWKITRDLKWRPKYTFDEGIKKTID 309
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 55/335 (16%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV- 173
I+VTGGAGF+GS+ V + V V+D + G K N+ EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EAILGDRVELVVGDIA 64
Query: 174 ----VEPLLLEVDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 224
V+ L + D I H A A S + +P I TN +GT +L A++ R
Sbjct: 65 DAELVDKLAAKADAIVHYA--AESHNDNSLN---DPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 225 FLLTSTSEVYGD-PLQHPQKETYWGNV------NPIGVRSCYDEGKRTAETLTMDYHRGA 277
F ST EVYGD PL+ G S Y K ++ + + R
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 278 GVEVRIARIFNTYG---------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328
GV+ I+ N YG PR ++N L +YG+GK R +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQ-------ITN----ILAGIKPKLYGEGKNVRDWI 228
Query: 329 FVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDP 386
+D G+ ++ +G + +G GE E+ +++ E + + D
Sbjct: 229 HTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDH---VTDRA 285
Query: 387 -HKRK--PDISRAKELLGWEPKVS-LRKGLPKMVK 417
H + D S+ ++ LGW P+ + +GL + ++
Sbjct: 286 GHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQ 320
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 51/343 (14%)
Query: 104 SGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHH 160
G L + + I+VTGGAGF+GS+ V ++ +I D ++G NV
Sbjct: 12 DLGTENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSI 71
Query: 161 FGNPNFELIRHDV-----VEPLLLE--VDQIYHLACPA-SPV----HYKFNPVKTIKTNV 208
+PN+ ++ ++ +E ++ E V I + A A S V NP+ TNV
Sbjct: 72 QDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRSIE---NPIPFYDTNV 126
Query: 209 VGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267
+GT+ +L L K+ + + ST EVYG L + P+ S Y K +A+
Sbjct: 127 IGTVTLLELVKKYPHIKLVQVSTDEVYGS-LGK---TGRFTEETPLAPNSPYSSSKASAD 182
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPR--------MCIDDGRVVSNFVAQALRKEPLTVYG 319
+ + Y++ + V + R N YGP + + AL + L +YG
Sbjct: 183 MIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMV----------TNALEGKKLPLYG 232
Query: 320 DGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IE 377
DG R + V+D + ++ VG +N+G E T +E+ + + + K IE
Sbjct: 233 DGLNVRDWLHVTDHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIE 292
Query: 378 FRPNTEDDP-HKRK--PDISRAKELLGWEPKVSLRKGLPKMVK 417
+ D H R+ + + K WEPK + +GL + V+
Sbjct: 293 Y---VTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQ 332
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 1e-30
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 57/335 (17%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I++ GGAG++GSH V +L+ G SV+VVDN TG ++ + + D+ +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRDKAF 58
Query: 179 LE-------VDQIYHLACPAS---------PVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
L ++ + H A A P+ Y N NV G L +L +
Sbjct: 59 LRDVFTQENIEAVMHFA--ADSLVGVSMEKPLQYYNN-------NVYGALCLLEVMDEFK 109
Query: 223 -ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
+F+ +ST+ YG+ E + Y E K E + Y + + +
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETKLAIEKMLHWYSQASNLRY 164
Query: 282 RIARIFNTYG--PRMCI-DDGRVVSN---FVAQAL--RKEPLTVYG------DGKQTRSF 327
+I R FN G P I +D R ++ V Q ++E + ++G DG R +
Sbjct: 165 KIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224
Query: 328 QFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
V DLV L L G +NLGN F++ E+ V+E + E P
Sbjct: 225 IHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRA 284
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
DP + +AKE LGW+P+ + +++
Sbjct: 285 GDPARLVASSQKAKEKLGWDPR---YVNVKTIIEH 316
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 90/350 (25%), Positives = 142/350 (40%), Gaps = 69/350 (19%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV-- 173
+I++TGGAGF+GS +V +I D+V+ +D + G E++ + + D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 174 ---VEPLLLE--VDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNML-------- 215
+ + + D + HLA A S V P I+TN+VGT +L
Sbjct: 62 SAEITRIFEQYQPDAVMHLA--AESHVDRSIT---GPAAFIETNIVGTYALLEVARKYWS 116
Query: 216 --GLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVN------PIGVRSCYDEGKRTAE 267
G K+ RF ST EVYGD L HP + + S Y K +++
Sbjct: 117 ALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSD 175
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPR--------MCIDDGRVVSNFVAQALRKEPLTVYG 319
L + R G+ + N YGP + I AL +PL +YG
Sbjct: 176 HLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVI----------LNALEGKPLPIYG 225
Query: 320 DGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETID---PNAK 375
G Q R + +V D L ++ G +N+G E L++ + + +D P A
Sbjct: 226 KGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT 285
Query: 376 -----IEFRPNTEDDP-HKRK--PDISRAKELLGWEPKVSLRKGLPKMVK 417
I + D P H R+ D + LGW+P + G+ K V+
Sbjct: 286 SYREQITY---VADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 80/330 (24%), Positives = 134/330 (40%), Gaps = 49/330 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN-----FELIRHD 172
R ++TG AGFVG +L + L + V + NV + ++I
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISD- 72
Query: 173 VVEPLLLEVDQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG--ARFLLT 228
++P D I+HLA A S V + N T TNV GTL++L + R L
Sbjct: 73 -IKP-----DYIFHLA--AKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTI 124
Query: 229 STSEVYG--DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
+SE YG P + P E N + S Y K + L Y + G+++ R
Sbjct: 125 GSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRT 179
Query: 287 FNTYGPRMCIDDGR----VVSNFVAQALR-----KEPLTVYGDGKQTRSFQFVSDLVEGL 337
FN GP + V +F Q + +EP+ G+ + R F V D+V+
Sbjct: 180 FNHIGPG------QSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAY 233
Query: 338 MRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIE-----FRPNTEDDPHKRKP 391
L + G +N+ + + ++ ++ + E RP+ +
Sbjct: 234 WLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPS---EVPTLIG 290
Query: 392 DISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
R K+ GW+P++ L K L ++++ +RQ
Sbjct: 291 SNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 71/333 (21%), Positives = 123/333 (36%), Gaps = 49/333 (14%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-------DNFFT--GRKENVMHHFGN-P 164
+G R+ VTG GF G L L G +V + F + + G+
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 165 NFELIRHDVVEPLLLEVDQIYHLACPASP-VH--YKFNPVKTIKTNVVGTLNMLGLAKRV 221
+ + + E + + ++H+A A P V Y PV+T TNV+GT+ +L + V
Sbjct: 68 DQNKLLESIRE---FQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHV 121
Query: 222 G--ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY------ 273
G + ++ + Y + +G Y K AE +T Y
Sbjct: 122 GGVKAVVNITSDKCYDNKEWIWGYREN----EAMGGYDPYSNSKGCAELVTSSYRNSFFN 177
Query: 274 ---HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
+ G V R N G R+V + + + +P+ + + R +Q V
Sbjct: 178 PANYGQHGTAVATVRAGNVIGGGD-WALDRIVPDILRAFEQSQPVII-RNPHAIRPWQHV 235
Query: 331 SDLVEGLMRLME------GEHVGPFNLGNPGE--FTMLELAQVVQETIDPNAKIEFRPNT 382
+ + G + L + E+ +N G + + + + + A + N
Sbjct: 236 LEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN- 294
Query: 383 EDDPH--KR-KPDISRAKELLGWEPKVSLRKGL 412
PH K D S+AK LGW P+ +L L
Sbjct: 295 -AHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTL 326
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 94.8 bits (237), Expect = 9e-22
Identities = 86/350 (24%), Positives = 138/350 (39%), Gaps = 77/350 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVE 175
I+VTGGAG++GSH L+A G V++ DN ++E + + DV +
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66
Query: 176 PLLLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 221
L + H A A P+ Y N N+ L++L + +
Sbjct: 67 ERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRVMRER 119
Query: 222 GARFLLTSTS-EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
+ ++ S+S VYG P + P ET+ P+ + Y + K AE + D A
Sbjct: 120 AVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEA-ADPS 173
Query: 281 VRIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG------DGKQ 323
R+A R FN G I +D + N +VAQ A+ + E L V+G DG
Sbjct: 174 WRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTG 233
Query: 324 TRSFQFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLEL----AQVVQETIDPNAK 375
R + V DL G L L + NLG +++LE+ + + +
Sbjct: 234 VRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAV--PYE 291
Query: 376 IEFRPNTEDDPHKRKPDI-------SRAKELLGWEPKVSLRKGLPKMVKD 418
+ R R D+ + A E +GW+ + + L +M D
Sbjct: 292 LVAR---------RPGDVAECYANPAAAAETIGWKAE----RDLERMCAD 328
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 89.8 bits (224), Expect = 5e-20
Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 78/351 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVE 175
R++VTGG+G++GSH +L+ G VI++DN ++ + + G + + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 176 PLLLE-------VDQIYHLAC-------PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 221
L+ +D + H A P+ Y N NV GTL ++ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMRAA 114
Query: 222 GARFLLTSTSE-VYGDPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGV 279
+ + S+S VYGD + P E++ P G +S Y + K E + D + A
Sbjct: 115 NVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQK-AQP 168
Query: 280 EVRIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG------DGK 322
+ IA R FN G P + +D + + N ++AQ A+ R++ L ++G DG
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 323 QTRSFQFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLEL----AQVVQETIDPNA 374
R + V DL +G + +L V +NLG ++L++ ++ + + N
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV--NY 286
Query: 375 KIEFRPNTEDDPHKRKPDI-------SRAKELLGWEPKVSLRKGLPKMVKD 418
R R+ D+ S+A L W + L +M +D
Sbjct: 287 HFAPR---------REGDLPAYWADASKADRELNWRVT----RTLDEMAQD 324
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 90/357 (25%), Positives = 145/357 (40%), Gaps = 84/357 (23%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--------MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNML 215
D+++ L+ + H A P+ Y N+ GT+ +L
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGTIQLL 116
Query: 216 GLAKRVGARFLLTSTSE-VYGDPLQHPQKETYWGNVNPIGVRSC-YDEGKRTAETLTMDY 273
+ K G + L+ S+S VYG+P P E + P G + Y + K E + D
Sbjct: 117 EIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEMIRDL 171
Query: 274 HRGAGVEVRIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG--- 319
+ A R FN G CI +D + + N +V+Q A+ R+E L V+G
Sbjct: 172 CQ-ADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDY 230
Query: 320 ---DGKQTRSFQFVSDLVEG----LMRLMEGEHVGPFNLGNPGEFTMLEL----AQVVQE 368
DG R + V DL +G L +L E +NLG +++L++ + +
Sbjct: 231 DTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK 290
Query: 369 TIDPNAKIEFRPNTEDDPHKRKPDI-------SRAKELLGWEPKVSLRKGLPKMVKD 418
I K+ R R+ D+ S A+E LGW GL +M +D
Sbjct: 291 KI--PYKVVAR---------REGDVAACYANPSLAQEELGWTAA----LGLDRMCED 332
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 75/393 (19%), Positives = 130/393 (33%), Gaps = 118/393 (30%)
Query: 118 RIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNFFTGRKENVMHHFGNPNF---------- 166
R++V GGAG++GSH V L+ SV++VD+ ++
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 167 --------ELIRHDVVEPLLLE--------VDQIYHLACPAS---------PVHYKFNPV 201
L DV L +D + H+ A P+ Y N
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMC--AFLAVGESVRDPLKYYDN-- 119
Query: 202 KTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYGDPLQ-------------HPQKETYW 247
NVVG L +L + + +S++ ++G+P +
Sbjct: 120 -----NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPE-- 172
Query: 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR------- 300
+P Y E K AE + D G++ R FN G +DG
Sbjct: 173 ---SP------YGESKLIAERMIRDCAEAYGIKGICLRYFNACG---AHEDGDIGEHYQG 220
Query: 301 -------VVSNFVAQ------------ALRKEPLTVYG------DGKQTRSFQFVSDLVE 335
++ ++ A + + ++G DG R + V DL
Sbjct: 221 STHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLAS 280
Query: 336 G----LMRLMEGEHVGP------FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDD 385
L + + FNLG +++ E+ +V ++T + E D
Sbjct: 281 AHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGD 340
Query: 386 PHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
P +A+E+LGW+PK L +++
Sbjct: 341 PAYLVAASDKAREVLGWKPK---YDTLEAIMET 370
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 86/363 (23%), Positives = 136/363 (37%), Gaps = 84/363 (23%)
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIR 170
+ ++VTGGAG++GSH V LI G +V DN ++V + +
Sbjct: 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYE 67
Query: 171 HDVVEPLLLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNMLG 216
D+ + LE +D + H A P+ Y N N++GT+ +L
Sbjct: 68 VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHN-------NILGTVVLLE 120
Query: 217 LAKRVGARFLLTSTSE-VYGDPLQHPQK----ETYWGNVNPIGVRSCYDEGKRTAETLTM 271
L ++ + S+S VYGD + P E P+G + Y K E +
Sbjct: 121 LMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILN 175
Query: 272 DYHRGAGVEVRIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG- 319
D + + A R FN G P I +D + N ++AQ A+ R+E L ++G
Sbjct: 176 DLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGD 235
Query: 320 -----DGKQTRSFQFVSDLVEG----LMRLMEGEHVGP----FNLGNPGEFTMLEL---- 362
DG R + V DL +G L L +NLG+ T+ E+
Sbjct: 236 DYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAF 295
Query: 363 AQVVQETIDPNAKIEFRPNTEDDPHKRKPDI-------SRAKELLGWEPKVSLRKGLPKM 415
+ + K+ R R D+ RAK L W+ + +
Sbjct: 296 CKASGIDL--PYKVTGR---------RAGDVLNLTAKPDRAKRELKWQTE----LQVEDS 340
Query: 416 VKD 418
KD
Sbjct: 341 CKD 343
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 69/336 (20%), Positives = 122/336 (36%), Gaps = 44/336 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVI--VVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
V GG GFV S LV L+ +G +V V D ++ V H ++ +
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRD---PDNQKKVSHLLELQELGDLK--IFR 65
Query: 176 PLLLE----------VDQIYHLACPASPVHYKF-NPVK-TIKTNVVGTLNMLGLAKRVGA 223
L + D ++H+ A+PVH+ +P IK + G +N++ R +
Sbjct: 66 ADLTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKS 122
Query: 224 --RFLLT-STSEVYGDPLQHPQK---ETYWGNVNPIGVRSC----YDEGKRTAETLTMDY 273
R +LT S + V + L E W ++ + Y K AE +
Sbjct: 123 VKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKF 182
Query: 274 HRGAGVE-VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF--- 329
++ + + G + D + ++ E L G Q S
Sbjct: 183 AEENNIDLITVIPTL-MAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIA 241
Query: 330 -VSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPH 387
V D+ + + E E G + ++ ELA+ + + P K+ + D P
Sbjct: 242 HVEDVCRAHIFVAEKESASGRYIC-CAANTSVPELAKFLSKRY-PQYKVP--TDFGDFPP 297
Query: 388 KRKPDISRAK-ELLGWEPKVSLRKGLPKMVKDFRQR 422
K K IS K G+ K + + + V+ F+ +
Sbjct: 298 KSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAK 333
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 77/338 (22%), Positives = 122/338 (36%), Gaps = 56/338 (16%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
R+ + G G VGS + +L RGD +V R E L+ V
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELV----LRTRDE----------LNLLDSRAV 47
Query: 175 EPLLLEV--DQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
DQ+Y A + P I N++ N++ A + + L +
Sbjct: 48 HDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHPQ--KETYW--GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
S +Y P Q E+ G + P Y K L Y+R G + R
Sbjct: 108 SCIY--PKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMP 163
Query: 287 FNTYGPRMCID--DGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339
N YGP + V+ + A A + + V+G G R F V D+ +
Sbjct: 164 TNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIH 223
Query: 340 LME----------GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHK- 388
+ME + N+G + T+ ELAQ + + + ++ F D K
Sbjct: 224 VMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF------DASKP 277
Query: 389 ----RKP-DISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
RK D++R +L GW ++SL GL + F +
Sbjct: 278 DGTPRKLLDVTRLHQL-GWYHEISLEAGLASTYQWFLE 314
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 66/331 (19%), Positives = 119/331 (35%), Gaps = 40/331 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVI--VVDNFFTGRKENVMHHFGNP----NFELIRH 171
R+ VTGG GF+GS ++ L+ G SV + + RK +V P
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRAD--PERKRDVSFLTNLPGASEKLHFFNA 60
Query: 172 DVVEPLLLE-----VDQIYHLACPASPVHYKF--NPVKTIKTNVVGTLNMLGLAKRVGA- 223
D+ P I+H ASP+ + K V G L +L
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHT---ASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTV 117
Query: 224 -RFLLTST--SEVYGDPLQHPQKETYWGNVNPIGVR----SCYDEGKRTAETLTMDYHRG 276
RF+ TS+ + + + E+ W +V+ + Y K AE +++
Sbjct: 118 KRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ 177
Query: 277 AGVE-VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS--DL 333
G++ V + F G +C S A L G + F V D+
Sbjct: 178 NGIDVVTLILPF-IVGRFVCPKLP--DSIEKALVLVLGKKEQIGVTR----FHMVHVDDV 230
Query: 334 VEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPD 392
+ L+E G +N + E++Q++ P +I ++ R PD
Sbjct: 231 ARAHIYLLENSVPGGRYNCSP-FIVPIEEMSQLLSAKY-PEYQILTVDELKEIKGARLPD 288
Query: 393 ISRAK-ELLGWEPKVSLRKGLPKMVKDFRQR 422
++ K G++ K ++ ++ +++
Sbjct: 289 LNTKKLVDAGFDFKYTIEDMFDDAIQCCKEK 319
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 55/339 (16%), Positives = 103/339 (30%), Gaps = 48/339 (14%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVI--VVDNFFTGRKENVMHHFGNPNFELIRHD 172
+G ++VTG GFV SH+V++L+ G V + N+ +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS---ASKLANLQKRWDAKYPGRFETA 66
Query: 173 VVEPLLLE---------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 223
VVE +L + + H+ AS V + + + + GTLN L A +
Sbjct: 67 VVEDMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRAAAATPS 123
Query: 224 --RFLLT-STSEVYGDPLQHPQK---ETYWGNVNPIGVRSCYDEG--------------K 263
RF+LT ST E W N + K
Sbjct: 124 VKRFVLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLWVYAASK 180
Query: 264 RTAETLTMDYHRGAGVEVRIARIFN---TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320
AE + + + T G + ++ +L ++
Sbjct: 181 TEAELAAWKFMDENKPHFTLNAV-LPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239
Query: 321 GKQTRSFQFVSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFR 379
+ + D+ + + + G G F + ++ P+
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLY-PSKTFP-A 297
Query: 380 PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418
+ K D + + E+L + R + + +KD
Sbjct: 298 DFPDQGQDLSKFDTAPSLEILKSLGRPGWR-SIEESIKD 335
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 73/333 (21%), Positives = 121/333 (36%), Gaps = 39/333 (11%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVI--VVDNFFTGRKENVMHHFGNP----NFEL 168
+ + VTG +GF+GS LV RL+ RG +V V D + V H P + L
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD---PTNVKKVKHLLDLPKAETHLTL 60
Query: 169 IRHDVVEPLLLE-----VDQIYHLACPASPVHYKF-NPVK-TIKTNVVGTLNMLGLAKRV 221
+ D+ + + ++H+ A+P+ ++ +P IK + G L ++
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHV---ATPMDFESKDPENEVIKPTIEGMLGIMKSCAAA 117
Query: 222 GA--RFLLT-STSEVYGDPLQ-HPQKETYWGNVNPIGVRSC----YDEGKRTAETLTMDY 273
R + T S V Q E+ W ++ + Y K AE Y
Sbjct: 118 KTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKY 177
Query: 274 HRGAGVE-VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS- 331
+ ++ + I GP + S A + Y R QFV
Sbjct: 178 AKENNIDFITIIPTL-VVGPFIMSSMP--PSLITALSPITGNEAHYSI---IRQGQFVHL 231
Query: 332 -DLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKR 389
DL + L E G + + + +L+LA++++E P I D+ K
Sbjct: 232 DDLCNAHIYLFENPKAEGRYIC-SSHDCIILDLAKMLREKY-PEYNIPTEFKGVDENLKS 289
Query: 390 KPDISRAKELLGWEPKVSLRKGLPKMVKDFRQR 422
S+ LG+E K SL V R +
Sbjct: 290 VCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAK 322
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 1e-14
Identities = 39/267 (14%), Positives = 76/267 (28%), Gaps = 27/267 (10%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP---- 176
+ G G +G+ L + L + R+ + ++ D+ +P
Sbjct: 6 IVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPA-WHEDNPINYVQCDISDPDDSQ 64
Query: 177 -LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSE 232
L + + H+ + + N N+L L + +
Sbjct: 65 AKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRK 122
Query: 233 VYGDPLQHPQK----ETYWGNVNPIGVRSCYDEGKRTAET-LTMDYHRGAGVEVRIARIF 287
Y P + K + + P R Y E + + + G+ + R
Sbjct: 123 HYMGPFESYGKIESHDPPYTEDLP---RLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRPG 179
Query: 288 NTYGPRMCIDDGRVVSNFVAQALRKE---PLTVYGDGKQTRSFQFVSD---LVEGLMRLM 341
N +G V + V A+ K L G + SD + E +
Sbjct: 180 NIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAA 239
Query: 342 EGEHV--GPFNLGNPGEFTMLELAQVV 366
+ FN+ N F +V+
Sbjct: 240 VDPYAKNEAFNVSNGDVFKWKHFWKVL 266
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-14
Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 41/239 (17%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
+IV+ G +GFVGS L++ + RG V R + N + ++ + DV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTA-----VVRHPEKI-KIENEHLKVKKADVSSLD 59
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V + D + P N + L ++ K+ G RFL+ +
Sbjct: 60 EVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
++ N K E + ++
Sbjct: 114 GSLFIAPGLRLMDSGEVPENI------LPGVKALGEFYLNFLMKEKEIDWVFFS------ 161
Query: 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS--DLVEGLMRLME-GEHVG 347
P + G + L K+ + V G +S D ++ +E +H
Sbjct: 162 PAADMRPGVRTGRYR---LGKDDMIVDIVGN-----SHISVEDYAAAMIDELEHPKHHQ 212
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 2e-11
Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 45/211 (21%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV------DNFFTGRKENVMHHFGNPNFEL 168
+ +++TG GF+G +LV L+ R D + ++ R + F + + EL
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR-RRLEKTFDSGDPEL 130
Query: 169 IRH--------------DVVEP-----------LLLEVDQIYHLACPASPVHYKFNP-VK 202
+RH D EP L VD I A + V+ P +
Sbjct: 131 LRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSA---AMVN--AFPYHE 185
Query: 203 TIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYG-DPLQHPQKETYWGNVNP-----IGV 255
NV GT ++ +A F ST++V ++ ++P G
Sbjct: 186 LFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGW 245
Query: 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
Y K E L + + + V + R
Sbjct: 246 AGGYGTSKWAGEVLLREANDLCALPVAVFRC 276
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 5e-10
Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 29/241 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I + G G GS +++ RG V + R + + + +++ D+ +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIV-----RNAGKITQT-HKDINILQKDIFDLT 55
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
L L+ V + +V +++ + + LL
Sbjct: 56 LS------DLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQI 109
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
+ + Y + A+ L A P +
Sbjct: 110 DEDGNTLLESKGLRE---APYYPTARAQAKQLEHLKSHQAEFSWTYIS------PSAMFE 160
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVG-PFNLGNPG 355
G ++ + K+ L DG S + D ++ +E H+ F +
Sbjct: 161 PGERTGDYQ---IGKDHLLFGSDGNSFIS---MEDYAIAVLDEIERPNHLNEHFTVAGKL 214
Query: 356 E 356
E
Sbjct: 215 E 215
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 63/344 (18%), Positives = 120/344 (34%), Gaps = 65/344 (18%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD--NFFTGRKENVMHHFGNPNFELIRHDVVE 175
R++VTG G +G + + ++ L+ + V
Sbjct: 4 RVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQ----------VNLLDSNAVH 53
Query: 176 PLLLEV--DQIYHLACPASPVHYKF------NPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
++ + I H C A + P + NV + N+ A VGA +
Sbjct: 54 HIIHDFQPHVIVH--CAA----ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIY 107
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
S+ V+ D P +E P+ + Y + K E ++ + GA V +RI +
Sbjct: 108 ISSDYVF-DGTNPPYREE--DIPAPLNL---YGKTKLDGEKAVLENNLGAAV-LRIPIL- 159
Query: 288 NTYGPRMCIDDGRVVSNFVAQALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
YG ++ + V K + + Q R V D+ +L E
Sbjct: 160 --YGEV-----EKLEESAVTVMFDKVQFSNKSANMDHW--QQRFPTHVKDVATVCRQLAE 210
Query: 343 GEHVGP-----FNLGNPGEFTMLELAQVVQETID-PNAKIEFRPNTEDDPHK-RKP---- 391
+ P F+ + T E+A + + + P++ + RP T+ ++P
Sbjct: 211 KRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHL--RPITDSPVLGAQRPRNAQ 268
Query: 392 -DISRAKELLGWEP---KVSLRKGLPKMVKDFRQRIFGDHKEGG 431
D S+ + L + ++ +++ L + D R R H E
Sbjct: 269 LDCSKLETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFHAENL 312
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 9e-10
Identities = 48/320 (15%), Positives = 93/320 (29%), Gaps = 49/320 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT----GRKENVMHHFGNPNFELIRHDV 173
+I++ G G +G L RL A+G V + V + + R D
Sbjct: 5 KILIAG-CGDLGLELARRLTAQGHEVTGL----RRSAQPMPAGVQTLIAD----VTRPDT 55
Query: 174 VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 232
+ ++ +I AS +++ + V G N L + S++
Sbjct: 56 LASIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTG 111
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292
VYG ++ E + AE L A I R YGP
Sbjct: 112 VYGQEVEEWLDEDTP--PIAKDFSG---KRMLEAEAL------LAAYSSTILRFSGIYGP 160
Query: 293 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP---- 348
GR + QA + + D + L++
Sbjct: 161 ------GR--LRMIRQAQTP---EQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERL 209
Query: 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV-S 407
+ + + + +L + + + P + + +K +R G++
Sbjct: 210 YIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGN---KKLSNARLLA-SGYQLIYPD 265
Query: 408 LRKGLPKMVKDFRQRIFGDH 427
G ++ R+ H
Sbjct: 266 YVSGYGALLAAMREGHHHHH 285
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH 171
L +G+R++V G G V +L+ L +G + +E +++
Sbjct: 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVA----MVRNEEQGPELRERGASDIVVA 72
Query: 172 DVVEPL---LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLL 227
++ E +D + A + P KTI ++ G + + A++ G RF++
Sbjct: 73 NLEEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIM 128
Query: 228 TSTSEVYGDPLQHP 241
S+ DP Q P
Sbjct: 129 VSSVGT-VDPDQGP 141
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 20/140 (14%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV--IV--VDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
VTG G G++L L+ +G V +V + R + + D+ +
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR---ELGIEGDIQYEDGDMADA 75
Query: 177 -----LLLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG--ARF 225
+++ ++Y+LA A S V + PV T + +G ++L ++ RF
Sbjct: 76 CSVQRAVIKAQPQEVYNLA--AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 133
Query: 226 LLTSTSEVYGDPLQHPQKET 245
STSE++G Q E
Sbjct: 134 YQASTSEMFGLIQAERQDEN 153
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 4e-08
Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 34/235 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD---VV 174
+I V G G GS +V RG V+ V R + + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAV-----VRDPQKAADRLGATVATLVKEPLVLT 56
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 233
E L VD + + ++ +++ L + + ++ +
Sbjct: 57 EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSASL 109
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
HP + + G A V P
Sbjct: 110 AMPGADHPMILDFPESAASQPWYD----GALYQYYEYQFLQMNANVNWIGIS------PS 159
Query: 294 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVG 347
G +++V K+ L V DG+ + ++ ++ +E +
Sbjct: 160 EAFPSGP-ATSYV---AGKDTLLVGEDGQSHIT---TGNMALAILDQLEHPTAIR 207
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
+I + G G G + + + G V V+ R + + G ++ DV
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSSRLPSEGPRPAHVVVGDVLQAA 59
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V+ + D + L N + G N++ K G + + +++
Sbjct: 60 DVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
Query: 232 EVYGDPLQHP 241
+ DP + P
Sbjct: 113 FLLWDPTKVP 122
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 8e-08
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
+I + G G VG L+ L + RK + + N + + DV
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKVEQVPQY--NNVKAVHFDVDWTP 54
Query: 174 --VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+ L +D I +++ +K ++ G + ++ A++ RF+L ST
Sbjct: 55 EEMAKQLHGMDAIINVS--------GSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 52/167 (31%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 101 AVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSV--IV--VDNFFTGRKEN 156
+ K G R ++TG G GS+L + L+ +G V IV +F TGR E+
Sbjct: 11 SSGRENKYFQGHMRN--VALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEH 68
Query: 157 VM---HHFGNPNFELIRHDVVEP-----LLLEV--DQIYHLACPA-SPVHYKF-NPVKTI 204
+ N +L D+ + ++ EV +IY+L A S V F T
Sbjct: 69 LYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLG--AQSHVKISFDLAEYTA 126
Query: 205 KTNVVGTLNML------GLAKRVGARFLLTSTSEVYGDPLQHPQKET 245
+ VGTL +L GL V +F STSE+YG + PQKET
Sbjct: 127 DVDGVGTLRLLDAVKTCGLINSV--KFYQASTSELYGKVQEIPQKET 171
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 61/296 (20%), Positives = 106/296 (35%), Gaps = 75/296 (25%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVV---DNFFTGRKENVM-HHFGNPNFELI 169
I++TGG G G V +++ + I+V D K++ M F +P
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL----KQSEMAMEFNDPRMRFF 75
Query: 170 RHDV-----VEPLLLEVDQIYHLAC----PASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 220
DV + L VD H A P + ++NP++ IKTN++G N++ +
Sbjct: 76 IGDVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMGASNVINACLK 131
Query: 221 VG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
++ + ST + NPI + Y K ++ L + + G
Sbjct: 132 NAISQVIALSTDKA----------------ANPINL---YGATKLCSDKLFVSANNFKGS 172
Query: 280 E---VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVE 335
+ R N G R G VV F K + + D + TR + + + V
Sbjct: 173 SQTQFSVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPI-TDIRMTRFWITLDEGVS 226
Query: 336 GLMRLMEGEHVGPFNLGNPGE--------FTMLELAQVVQETIDPNAKIEF---RP 380
+++ + GE M +LA+ + PN + RP
Sbjct: 227 FVLK--------SLKRMHGGEIFVPKIPSMKMTDLAKA----LAPNTPTKIIGIRP 270
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV--IV--VDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+TG G G++L L+ +G V F + R + + ++I D++E
Sbjct: 8 ITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK---ELGIENDVKIIHMDLLEF 64
Query: 177 -----LLLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG--ARF 225
+ +V D++Y+LA A S V F P+ T + + +G L +L + V +F
Sbjct: 65 SNIIRTIEKVQPDEVYNLA--AQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKF 122
Query: 226 LLTSTSEVYGDPLQHPQKET 245
STSE++G + PQ E
Sbjct: 123 YQASTSEMFGKVQEIPQTEK 142
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+ +TG G VG L +L G VI + ++ F +P L
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVIQL----VRKEPKPGKRFWDPLNPASD------L 198
Query: 178 LLEVDQIYHLA 188
L D + HLA
Sbjct: 199 LDGADVLVHLA 209
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV--IV--VDNFFTGRKENVMH--HFGNPNFELIRHDVV 174
+TG G GS+L + L+ +G V I +F T R +++ H NP F L D+
Sbjct: 6 ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLS 65
Query: 175 EP-----LLLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNML------GLAK 219
+ +L EV D++Y+L A S V F +P T + +GTL +L GL K
Sbjct: 66 DTSNLTRILREVQPDEVYNLG--AMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKET 245
+ RF STSE+YG + PQKET
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET 147
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 8e-07
Identities = 63/338 (18%), Positives = 114/338 (33%), Gaps = 77/338 (22%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G + ++I++TG G +G + +L + VI T ++
Sbjct: 2 GSDKIHHHHHHMKILITGANGQLGREIQKQLKGKNVEVI-----PTDVQD---------- 46
Query: 166 FELIRHDVVEPLLLEV--DQIYHLACPASPVHY------KFNPVKTIKTNVVGTLNMLGL 217
++ V E + + + C A + + K N +G N+
Sbjct: 47 LDITNVLAVNKFFNEKKPNVVIN--CAA----HTAVDKCEEQYDLAYKINAIGPKNLAAA 100
Query: 218 AKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
A VGA + ST V+ + P E VNP Y + K E +
Sbjct: 101 AYSVGAEIVQISTDYVFDGEAKEPITEF--DEVNPQSA---YGKTKLEGENFVKALNPKY 155
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVS-- 331
+ VR A + YG G NFV + + L V D Q +
Sbjct: 156 YI-VRTAWL---YGD------GN---NFVKTMINLGKTHDELKVVHD-------QVGTPT 195
Query: 332 ---DLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDD--- 385
DL ++++++ ++ G F+ G + + A + + K+ P T ++
Sbjct: 196 STVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKV--TPCTTEEFPR 253
Query: 386 PHKRKP-----DISRAKELLGWEP---KVSLRKGLPKM 415
P KR P + G K SL++ + +
Sbjct: 254 PAKR-PKYSVLRNYMLELTTGDITREWKESLKEYIDLL 290
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 52/314 (16%), Positives = 100/314 (31%), Gaps = 79/314 (25%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R ++TG +G +G L L R + + V ++ G +L +E
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSS---------EIQGGYKLDLTDFPRLEDF 52
Query: 178 LLEV--DQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
+++ D I + A C K K N +++ K + + +
Sbjct: 53 IIKKRPDVIINAAAMTDVDKCEI-------EKEKAYKINAEAVRHIVRAGKVIDSYIVHI 105
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH----RGAGVEVRIA 284
ST V+ D + KE NPI Y K ET + R +G+
Sbjct: 106 STDYVF-DGEKGNYKEE--DIPNPINY---YGLSKLLGETFALQDDSLIIRTSGI----- 154
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
+ + F + + + + K S L ++ L
Sbjct: 155 -----FRNK----------GFPIYVYKTLKEGKTVFAF---KGYYSPISARKLASAILEL 196
Query: 341 MEGEHVGPFNLGNPG----EFTMLELAQVVQETIDPNAKIEFRPNTEDDPHK-RKP---- 391
+E G ++ E A ++E + +++ E ++P
Sbjct: 197 LELRKTGIIHVAGERISRFEL-----ALKIKEKFNLPGEVK--EVDEVRGWIAKRPYDSS 249
Query: 392 -DISRAKELLGWEP 404
D SRA+++L +
Sbjct: 250 LDSSRARKILSTDF 263
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 61/309 (19%), Positives = 92/309 (29%), Gaps = 51/309 (16%)
Query: 124 GAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQ 183
G G+ L L +G +I T R + M E + EP L V
Sbjct: 12 GHGYTARVLSRALAPQGWRIIG-----TSRNPDQMEAIRASGAEPLLWPGEEPSLDGVT- 65
Query: 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQ 239
HL +P +PV L LG A ST+ VYGD
Sbjct: 66 --HLLISTAPDSGG-DPV----------LAALGDQIAARAAQFRWVGYLSTTAVYGDHDG 112
Query: 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG 299
ET + P R G+ + + + + R+ YGP G
Sbjct: 113 AWVDETTP--LTPTAAR-----GRWRVMAEQQ-WQAVPNLPLHVFRLAGIYGP------G 158
Query: 300 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP-FNLGNPGEFT 358
R ++ + + Q S V D+ + L M G +N+ +
Sbjct: 159 R---GPFSKLGKGGIRRI-IKPGQVFSRIHVEDIAQVLAASMARPDPGAVYNVCDDEPVP 214
Query: 359 MLELAQVVQETID-PNAKIEFRPNTEDDP-------HKRKPDISRAKELLGWEPKV-SLR 409
++ E P + P ++ R KE LG K + R
Sbjct: 215 PQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYR 274
Query: 410 KGLPKMVKD 418
GL + D
Sbjct: 275 VGLEALQAD 283
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 59/329 (17%), Positives = 112/329 (34%), Gaps = 74/329 (22%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R+++TG G +G L + L + +K ++ V+ +
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEYDIY-----PFDKKL----------LDITNISQVQQV 51
Query: 178 LLEV--DQIYHLACPASPVHY------KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
+ E+ I H C A Y + N +G N+ ++ VGA+ + S
Sbjct: 52 VQEIRPHIIIH--CAA----YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYIS 105
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
T V+ E N PI + Y K E + H + VR + ++
Sbjct: 106 TDYVFQGDRPEGYDEF--HNPAPINI---YGASKYAGEQFVKELHNKYFI-VRTSWLYGK 159
Query: 290 YGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVS-----DLVEGLMRL 340
YG +NFV +R +E ++V D Q S DL + +L
Sbjct: 160 YG-----------NNFVKTMIRLGKEREEISVVAD-------QIGSPTYVADLNVMINKL 201
Query: 341 MEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDD---PHKRKP-----D 392
+ G +++ N G + E A+ + + + P + ++ R P
Sbjct: 202 IHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNV--LPVSTEEFGAAAAR-PKYSIFQ 258
Query: 393 ISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
+ + + S +GL + + +
Sbjct: 259 HNMLRLNGFLQMP-SWEEGLERFFIETKS 286
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 50/302 (16%), Positives = 88/302 (29%), Gaps = 77/302 (25%)
Query: 148 NFFTGRKE----NVMHHFGNPNF--ELIRHDVVEPL--LL---EVDQIYHLACPASPVHY 196
+F TG + +++ F F DV + +L E+D I S
Sbjct: 8 DFETGEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 197 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256
F + + + +V + R+ +FL++ P Y
Sbjct: 67 LFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQP--SMMTRMY---------I 113
Query: 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP-L 315
D + Y+ V + + R + LR +
Sbjct: 114 EQRDRLYNDNQVFA-KYN------VSRLQPYLKL--RQAL-----------LELRPAKNV 153
Query: 316 TVYGD---GKQTRSFQFVSDLVEGLMRLMEGEHVGPF--NLGN---PGEFTMLELAQVVQ 367
+ G GK + + M+ F NL N P +LE+ Q +
Sbjct: 154 LIDGVLGSGKTWVALDVCLS--YKVQCKMDF---KIFWLNLKNCNSPET--VLEMLQKLL 206
Query: 368 ETIDPN--AKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL--------PKMVK 417
IDPN ++ + N + H + ++ R LL +P L K
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKP---YENCLLVLLNVQNAKAWN 260
Query: 418 DF 419
F
Sbjct: 261 AF 262
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 25/147 (17%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSV--IV--VDNFFTGRKENVM---HHFGNPNFELIRHDV 173
+TG G GS+L + L+ +G V ++ NF T R ++ H+ +L D+
Sbjct: 33 ITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADL 92
Query: 174 VEP-----LLLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNML------GLA 218
+ + + D++Y+LA A S V F P T G L +L +
Sbjct: 93 TDASSLRRWIDVIKPDEVYNLA--AQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTID 150
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKET 245
++ +SE++G PQ ET
Sbjct: 151 SGRTVKYYQAGSSEMFGS-TPPPQSET 176
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 23/132 (17%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
++VTG +G G + +L D + R G ++ D+ +
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKG---LVRSAQGKEKIG-GEADVFIGDITDAD 61
Query: 178 LLE-----VDQIYHLA-------------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
+ +D + L P + + + +G N + AK
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 220 RVG-ARFLLTST 230
G ++ +
Sbjct: 122 VAGVKHIVVVGS 133
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 16/124 (12%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHD 172
+ + + G +G G L+ ++ +G V ++ GR++ N D
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLI-----GRRKLTFDEEAYKNVNQEVVD 71
Query: 173 V-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 226
D + K ++ + L LAK G F
Sbjct: 72 FEKLDDYASAFQGHDVGFCCLG---TTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN 128
Query: 227 LTST 230
L S+
Sbjct: 129 LLSS 132
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
R+++ G G G HL+DR+++ VI RK H P + + E
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEPTLAKVIAP-----ARKALAEH----PRLDNPVGPLAE 57
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 40/201 (19%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+++ G G + H++++L + + R+ +H N ++I DV+
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQTL----FARQPAKIHKPYPTNSQIIMGDVLNHA 80
Query: 178 LLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTS 231
L+ D +Y T + + +++ K R + +
Sbjct: 81 ALKQAMQGQDIVYANL--------------TGEDLDIQANSVIAAMKACDVKRLIFVLSL 126
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE---VRIARIFN 288
+Y + P K W N + R A D +G+E +R A + +
Sbjct: 127 GIYDEV---PGKFVEWNNAVIGE----PLKPFRRAA----DAIEASGLEYTILRPAWLTD 175
Query: 289 --TYGPRMCIDDGRVVSNFVA 307
+ + V+
Sbjct: 176 EDIIDYELTSRNEPFKGTIVS 196
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 7e-04
Identities = 23/176 (13%), Positives = 46/176 (26%), Gaps = 37/176 (21%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVV 174
I + G AG + L L+ D I + GR+ + +I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITL----YGRQLKTRIPPEIIDHERVTVIEGSFQ 62
Query: 175 EPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
P LE + ++ + +++ R R ++
Sbjct: 63 NPGXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGV 106
Query: 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
+ + Y +G+R A + R + + I R
Sbjct: 107 SMAGLSGEFPVA-----LEKWTFDNLPISYVQGERQAR----NVLRESNLNYTILR 153
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.98 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.97 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.97 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.97 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.97 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.97 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.97 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.97 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.96 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.96 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.96 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.95 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.95 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.94 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.94 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.94 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.93 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.93 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.92 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.91 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.91 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.91 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.91 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.91 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.91 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.91 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.91 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.91 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.89 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.89 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.88 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.88 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.88 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.88 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.88 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.87 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.87 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.87 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.87 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.87 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.87 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.87 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.87 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.86 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.86 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.86 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.86 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.86 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.86 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.86 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.86 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.86 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.86 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.86 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.86 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.86 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.86 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.86 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.85 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.85 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.85 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.85 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.85 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.85 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.85 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.85 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.85 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.85 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.85 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.85 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.85 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.85 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.85 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.85 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.85 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.85 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.85 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.85 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.85 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.85 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.85 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.85 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.84 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.84 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.84 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.84 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.84 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.84 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.84 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.84 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.84 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.84 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.84 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.84 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.84 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.84 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.84 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.84 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.84 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.84 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.84 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.84 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.84 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.84 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.84 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.84 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.84 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.84 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.84 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.84 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.84 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.84 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.84 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.84 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.83 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.83 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.83 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.83 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.83 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.83 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.83 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.83 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.83 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.83 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.83 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.83 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.83 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.83 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.83 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.83 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.83 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.83 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.83 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.83 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.83 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.83 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.83 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.82 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.82 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.82 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.82 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.82 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.82 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.82 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.82 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.82 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.82 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.82 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.82 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.82 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.82 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.82 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.82 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.82 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.82 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.82 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.82 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.82 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.82 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.82 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.81 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.81 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.81 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.81 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.81 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.81 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.81 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.81 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.81 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.81 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.81 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.81 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.81 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.81 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.81 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.81 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.81 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.81 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.81 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.81 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.81 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.8 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.8 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.8 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.8 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.8 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.8 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.8 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.8 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.8 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.8 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.8 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.8 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.79 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.79 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.79 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.79 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.79 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.79 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.79 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.79 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.79 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.78 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.78 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.78 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.78 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.78 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.78 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.78 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.77 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.77 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.77 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.76 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.76 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.75 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.75 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.75 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.74 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.74 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.74 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.73 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.73 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.73 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.72 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.71 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.71 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.71 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.7 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.7 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.68 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.67 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.6 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.6 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.58 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.56 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.56 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.49 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.46 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.37 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.34 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.34 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.34 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.3 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.28 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.26 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.22 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.02 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.85 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.83 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.82 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.75 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.73 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.71 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.34 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.32 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.23 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.16 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.15 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.14 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.01 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.01 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.0 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.96 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.94 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.84 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.84 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.83 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.75 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.73 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.68 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.61 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.59 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.57 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.54 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.54 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.49 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.49 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.47 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.46 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.45 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.44 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.43 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.39 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.38 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.37 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.32 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.31 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.3 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.28 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.24 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.24 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 97.2 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.2 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.19 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.17 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.17 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.12 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.1 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.08 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.07 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.07 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.07 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.05 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 97.04 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.03 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.03 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.01 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.0 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.99 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.94 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.94 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.89 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.73 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.69 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.67 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.67 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.65 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.64 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.62 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.58 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.57 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.57 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.55 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.54 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.51 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.48 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.43 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.42 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.42 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.41 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.4 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.36 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.35 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.34 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.34 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.32 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.3 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.29 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.25 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.23 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.2 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.19 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.13 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.13 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.09 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.07 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.06 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.06 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.05 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.93 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.92 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.92 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.89 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.85 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.78 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.78 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.77 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.75 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.73 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.71 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.69 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.69 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.62 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.59 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 95.59 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.59 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.58 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 95.58 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 95.58 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.53 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.52 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.51 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.42 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.42 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.37 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.34 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.33 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.3 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.28 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.26 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.26 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.26 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.21 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.2 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 95.19 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.17 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.14 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.1 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.1 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.08 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.08 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.01 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.98 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 94.94 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.93 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 94.92 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 94.91 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 94.87 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 94.78 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 94.76 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.75 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.72 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 94.7 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 94.7 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.69 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 94.69 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.68 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 94.67 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 94.66 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.65 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.6 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.53 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.51 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 94.45 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.45 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.4 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.37 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 94.33 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 94.12 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.09 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.07 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 94.05 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.04 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 94.02 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 93.96 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 93.96 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.91 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 93.91 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.91 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 93.9 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 93.89 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.89 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-46 Score=365.35 Aligned_cols=312 Identities=64% Similarity=1.073 Sum_probs=268.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
.++|+|||||||||||++++++|+++|++|++++|................+++++.+|+.+..+.++|+|||+|+....
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~~~ 104 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 104 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSH
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccccCc
Confidence 45789999999999999999999999999999999754443333333334578999999999999999999999997554
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (442)
..+..++...+++|+.++.+++++|++.+++|||+||.++|+.....+++|+.|....+..+.+.|+.+|+.+|.+++.+
T Consensus 105 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~ 184 (343)
T 2b69_A 105 PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAY 184 (343)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 33455678889999999999999999988899999999999987777888887766566667788999999999999999
Q ss_pred HhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecC
Q 013467 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGN 353 (442)
Q Consensus 274 ~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~ 353 (442)
+++.|++++++||+++|||+.......++..++..++.++++.+++++.+.++|+|++|+|++++.+++.+..++||+++
T Consensus 185 ~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~i~~ 264 (343)
T 2b69_A 185 MKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGN 264 (343)
T ss_dssp HHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEESC
T ss_pred HHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCCCCeEEecC
Confidence 88889999999999999998654445678888888888988888888889999999999999999999887777999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 354 PGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 354 ~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
++.+|+.|+++.+.+.+|.+..+...+.....+....+|++|++++|||+|+++++++|+++++||+++...
T Consensus 265 ~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 336 (343)
T 2b69_A 265 PEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEY 336 (343)
T ss_dssp CCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877766555556678889999999999999889999999999999977543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=362.81 Aligned_cols=307 Identities=26% Similarity=0.383 Sum_probs=258.4
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC------CceeEEecccccc-----ccCC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN------PNFELIRHDVVEP-----LLLE 180 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~------~~v~~~~~D~~~~-----~~~~ 180 (442)
+..++|+|||||||||||++|+++|+++|++|++++|............... .++.++.+|+.+. ++.+
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 3446789999999999999999999999999999999765443332221111 5788999998764 5668
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
+|+|||+||.........++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+.+.|
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y 175 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPLSPY 175 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHH
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-----CCCCCCChh
Confidence 9999999997554444556778899999999999999999997 9999999999998888888888 566777999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
+.+|+.+|.+++.++++.|++++++||+++|||+..... ..++..++..++.+.++.+++++++.++|+|++|+|+++
T Consensus 176 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~ 255 (351)
T 3ruf_A 176 AVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 255 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHH
Confidence 999999999999999888999999999999999864321 267888999999999999999999999999999999999
Q ss_pred HHHHcCC--C-CccEEecCCCccCHHHHHHHHHHHhCCC-----CceEeCCCCCCCCCccccChHHHHHhhCCCcccCHH
Q 013467 338 MRLMEGE--H-VGPFNLGNPGEFTMLELAQVVQETIDPN-----AKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLR 409 (442)
Q Consensus 338 ~~~l~~~--~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~-----~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 409 (442)
+.+++.+ . .++||+++++.+|+.|+++.+.+.+|.+ ....+.+..........+|++|++++|||+|+++++
T Consensus 256 ~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~ 335 (351)
T 3ruf_A 256 ILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIR 335 (351)
T ss_dssp HHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCCCCCHH
T ss_pred HHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCCCCCHH
Confidence 9999873 2 3499999999999999999999999983 333333444455667889999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 013467 410 KGLPKMVKDFRQRI 423 (442)
Q Consensus 410 e~l~~~~~~~~~~~ 423 (442)
++|+++++||+++.
T Consensus 336 ~~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 336 EGLRLSMPWYVRFL 349 (351)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999874
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=358.79 Aligned_cols=305 Identities=26% Similarity=0.439 Sum_probs=251.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCC-ccccccccCCCceeEEecccccc-----ccCC--CC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGR-KENVMHHFGNPNFELIRHDVVEP-----LLLE--VD 182 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d 182 (442)
..++|+|||||||||||++|+++|+++| ++|++++|..... ...+.......++.++.+|+.+. ++.+ +|
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 3567899999999999999999999999 6888888764222 22222233346899999999775 3344 99
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCC-CCCCCCCCCCCCCCCCCCCChhH
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP-LQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~-~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
+|||+|+.........++...+++|+.++.+++++|++.++ +|||+||.++|+.. ...+++|+ .+..+.+.|+
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y~ 175 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPYS 175 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHHH
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-----CCCCCCChhH
Confidence 99999997665555567788999999999999999999997 89999999999976 45678887 5677789999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHH
Q 013467 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
.+|+.+|.+++.++++.|++++++||+++|||+. ....++..++..+..+.++.+++++.+.++|+|++|+|++++.+
T Consensus 176 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 176 SSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ--YPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC--CTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC--CccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999988899999999999999986 33467888999999999999999999999999999999999999
Q ss_pred HcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCc-eEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHH
Q 013467 341 MEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418 (442)
Q Consensus 341 l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~ 418 (442)
++++..| +||+++++.+++.|+++.+.+.+|.+.. +.+.+........+.+|++|++++|||+|+++++++|+++++|
T Consensus 254 ~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~ 333 (346)
T 4egb_A 254 LHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQW 333 (346)
T ss_dssp HHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9987766 9999999999999999999999998766 5555555555667789999999999999999999999999999
Q ss_pred HHHHhh
Q 013467 419 FRQRIF 424 (442)
Q Consensus 419 ~~~~~~ 424 (442)
|+++..
T Consensus 334 ~~~~~~ 339 (346)
T 4egb_A 334 YEKNEE 339 (346)
T ss_dssp HHHCHH
T ss_pred HHhhhh
Confidence 998653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=349.21 Aligned_cols=291 Identities=23% Similarity=0.336 Sum_probs=251.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccc----ccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV----EPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~----~~~~~~~d~Vih~A~~~ 191 (442)
+|+|||||||||||++|+++|+++|++|++++|. ..... + .+++++.+|+. ...+.++|+|||+|+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~-~------~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~ 73 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS-IGNKA-I------NDYEYRVSDYTLEDLINQLNDVDAVVHLAATR 73 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-CC------------CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC-CCccc-C------CceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence 4799999999999999999999999999999997 22222 1 26788888886 22567899999999975
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
... ++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.++
T Consensus 74 ~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~ 144 (311)
T 3m2p_A 74 GSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK-----ELPLPDLMYGVSKLACEHIG 144 (311)
T ss_dssp CSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-----SCCCCSSHHHHHHHHHHHHH
T ss_pred CCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCchhHHHHHHHHHHH
Confidence 433 5677889999999999999999998 8999999999998877888888 56777899999999999999
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-CccE
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPF 349 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g~~ 349 (442)
++++++.|++++++||+++|||+... ..++..++..+..+.++.+++++++.++|+|++|+|++++.+++++. .++|
T Consensus 145 ~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~ 222 (311)
T 3m2p_A 145 NIYSRKKGLCIKNLRFAHLYGFNEKN--NYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTF 222 (311)
T ss_dssp HHHHHHSCCEEEEEEECEEECSCC----CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHcCCCEEEEeeCceeCcCCCC--CCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCCCCeE
Confidence 99998889999999999999998632 26788899999999999988899999999999999999999999884 4599
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCCceEeCCC-CCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 350 NLGNPGEFTMLELAQVVQETIDPNAKIEFRPN-TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 350 ~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
|+++++.+|+.|+++.+.+.+|.+..+...+. .........+|++|++++|||+|+++++++|+++++||++....
T Consensus 223 ~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 299 (311)
T 3m2p_A 223 NIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDDV 299 (311)
T ss_dssp EECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC----
T ss_pred EeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999988887766 55667788999999999999999999999999999999866543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=353.99 Aligned_cols=297 Identities=28% Similarity=0.463 Sum_probs=257.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC---CCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT---GRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~---~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
++|+|||||||||||++++++|+++|++|++++|... .....+.......+++++.+|+. ++|+|||+|+..
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~~ 80 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASHK 80 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCccC
Confidence 4679999999999999999999999999999999765 23333333333456677777766 799999999976
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
.......++...++ |+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.++
T Consensus 81 ~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~ 154 (321)
T 3vps_A 81 SVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVA 154 (321)
T ss_dssp CHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred ChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHHH
Confidence 54334455666777 99999999999999997 9999999999998888888888 56777899999999999999
Q ss_pred HHHHhhcCC-cEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccE
Q 013467 271 MDYHRGAGV-EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPF 349 (442)
Q Consensus 271 ~~~~~~~g~-~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~ 349 (442)
+.++++.++ +++++||+++|||+.. ...++..++..+..+.++.+++++++.++|+|++|+|++++.+++++..|+|
T Consensus 155 ~~~~~~~~~~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~g~~ 232 (321)
T 3vps_A 155 GAHQRASVAPEVGIVRFFNVYGPGER--PDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVV 232 (321)
T ss_dssp HHHHHSSSSCEEEEEEECEEECTTCC--TTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCCSEE
T ss_pred HHHHHHcCCCceEEEEeccccCcCCC--CCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCCCeE
Confidence 999988899 9999999999999863 3567888888888998889899999999999999999999999998877899
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCc-ccCHHHHHHHHHHHHHHHhhc
Q 013467 350 NLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP-KVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 350 ~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p-~~~l~e~l~~~~~~~~~~~~~ 425 (442)
|+++++.+++.|+++.+. .+|.+..+...+..........+|++|++++|||+| +++++++|+++++||+++...
T Consensus 233 ~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~~ 308 (321)
T 3vps_A 233 NFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDLD 308 (321)
T ss_dssp EESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCTT
T ss_pred EecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999 999998888777777778889999999999999999 779999999999999877543
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=347.52 Aligned_cols=294 Identities=33% Similarity=0.541 Sum_probs=245.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc----cCCCCEEEEecccCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL----LLEVDQIYHLACPAS 192 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~Vih~A~~~~ 192 (442)
|+|||||||||||++|+++|+++|++|++++|......... ..++.++.+|+.+.. +.+ |+|||+|+...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~~ 74 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKG-DVVFHFAANPE 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCC-SEEEECCSSCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCC-CEEEECCCCCC
Confidence 58999999999999999999999999999998655433222 356788888887753 334 99999999755
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (442)
......++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.+++
T Consensus 75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~~sK~~~e~~~~ 149 (312)
T 3ko8_A 75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCA 149 (312)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHHH
Confidence 5555667888999999999999999999997 9999999999998887888888 567778999999999999999
Q ss_pred HHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC-CCcEEecCCceeEeccCHHHHHHHHHHHHcC---C-CC
Q 013467 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG---E-HV 346 (442)
Q Consensus 272 ~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~---~-~~ 346 (442)
.++++.|++++++||+++|||+. ...++..++..+..+ ..+..++++.+.++|+|++|+|++++.++++ + ..
T Consensus 150 ~~~~~~g~~~~~lrp~~v~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ 226 (312)
T 3ko8_A 150 TYARLFGVRCLAVRYANVVGPRL---RHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAP 226 (312)
T ss_dssp HHHHHHCCEEEEEEECEEECTTC---CSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhCCCEEEEeeccccCcCC---CCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCC
Confidence 99988899999999999999974 245677777777776 5566788889999999999999999999987 2 33
Q ss_pred -ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCC------CCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHH
Q 013467 347 -GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPN------TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 347 -g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~ 419 (442)
++||+++++.+++.|+++.+.+.+|.+..+...+. ...+.....+|++|+++.|||+|+++++++|+++++||
T Consensus 227 ~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~ 306 (312)
T 3ko8_A 227 FLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDL 306 (312)
T ss_dssp EEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHHHHHHHHH
T ss_pred CcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999999999888776543 23344567899999999999999999999999999999
Q ss_pred HHHhh
Q 013467 420 RQRIF 424 (442)
Q Consensus 420 ~~~~~ 424 (442)
+++..
T Consensus 307 ~~~~~ 311 (312)
T 3ko8_A 307 AKELW 311 (312)
T ss_dssp HHHHC
T ss_pred Hhhhc
Confidence 98753
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=345.86 Aligned_cols=298 Identities=29% Similarity=0.488 Sum_probs=242.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc----ccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP----LLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~~~~d~Vih~A~~~ 191 (442)
||+|||||||||||++|+++|+++| .|+++++......+.. ...+.++.+|+.+. .+.++|+|||+|+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~ 74 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAANP 74 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCCC
Confidence 5689999999999999999999999 5666665433332221 34678888888763 345899999999975
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
.......++...+++|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|+.+|.++
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~~~ 149 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLYGASKLACEALI 149 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHH
Confidence 54555667889999999999999999999997 9999999999998887888887 56677789999999999999
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC-CCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-cc
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-GP 348 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g~ 348 (442)
+.++++.|++++++||+++|||+. ...++..++..+..+ .++.+++++++.++|+|++|+|++++.+++.... ++
T Consensus 150 ~~~~~~~g~~~~ilRp~~v~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ 226 (313)
T 3ehe_A 150 ESYCHTFDMQAWIYRFANVIGRRS---THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226 (313)
T ss_dssp HHHHHHTTCEEEEEECSCEESTTC---CCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCSSEEE
T ss_pred HHHHHhcCCCEEEEeeccccCcCC---CcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCCCCce
Confidence 999998999999999999999975 235677777777776 5666888999999999999999999999995554 49
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC---CCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT---EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~---~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
||+++++.+++.|+++.+.+.+|.+..+.+.+.. ........+|++|+++ |||+|+++++++|+++++||+++...
T Consensus 227 ~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~~~~ 305 (313)
T 3ehe_A 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKPRYNSEEAVRMAVRDLVEDLDE 305 (313)
T ss_dssp EECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHHH-HTCCCSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999998877765432 2334457889999965 99999999999999999999998765
Q ss_pred ccc
Q 013467 426 DHK 428 (442)
Q Consensus 426 ~~~ 428 (442)
+..
T Consensus 306 ~~~ 308 (313)
T 3ehe_A 306 EGH 308 (313)
T ss_dssp ---
T ss_pred ccc
Confidence 544
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=351.38 Aligned_cols=303 Identities=22% Similarity=0.364 Sum_probs=251.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHh--CCCeEEEEeCCCCCC------cc--ccccccCCCceeEEecccccc-----c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIA--RGDSVIVVDNFFTGR------KE--NVMHHFGNPNFELIRHDVVEP-----L 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~--~g~~V~~l~r~~~~~------~~--~~~~~~~~~~v~~~~~D~~~~-----~ 177 (442)
.+++|+||||||+||||++|+++|++ +|++|++++|..... .+ .........++.++.+|+.+. +
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 86 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL 86 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh
Confidence 45678999999999999999999999 999999999965411 00 011112334678899998775 3
Q ss_pred -cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
..++|+|||+||... ....++...+++|+.++.+++++|++.+++|||+||.++||.... +++|+ .+..+.
T Consensus 87 ~~~~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p~ 158 (362)
T 3sxp_A 87 EKLHFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESPE 158 (362)
T ss_dssp TTSCCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCCS
T ss_pred hccCCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCC-----CCCCCC
Confidence 568999999999543 245678899999999999999999999989999999999997766 78888 567778
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 334 (442)
+.|+.+|+.+|.+++.++.+ ++++++||+++|||+..... ..++..++..+..+.++.+++++.+.++|+|++|+|
T Consensus 159 ~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva 236 (362)
T 3sxp_A 159 NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVI 236 (362)
T ss_dssp SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHH
Confidence 99999999999999998765 89999999999999864322 267888888889988888888888999999999999
Q ss_pred HHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC-CCCCCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 335 EGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT-EDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 335 ~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
++++.+++++..|+||+++++.+++.|+++.+.+.+| +..+.+.+.. ........+|++|+++.|||+|+++++++|+
T Consensus 237 ~ai~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~ 315 (362)
T 3sxp_A 237 QANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLESGIK 315 (362)
T ss_dssp HHHHHHTTCSSCEEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred HHHHHHHhcCCCCEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHHHHhCCCCCCCHHHHHH
Confidence 9999999988888999999999999999999999999 7777766655 5556778999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 013467 414 KMVKDFRQRIFGD 426 (442)
Q Consensus 414 ~~~~~~~~~~~~~ 426 (442)
++++||++.....
T Consensus 316 ~~~~~~~~~~~~~ 328 (362)
T 3sxp_A 316 DYLPHIHAIFKGQ 328 (362)
T ss_dssp HHHHHHTCC----
T ss_pred HHHHHHHHHhhcc
Confidence 9999998776543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=352.40 Aligned_cols=323 Identities=24% Similarity=0.338 Sum_probs=259.0
Q ss_pred CccccccccCCCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---ccC---CCceeEE
Q 013467 96 RVGFGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HFG---NPNFELI 169 (442)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~~---~~~v~~~ 169 (442)
..++|+.+.....+.....++|+|||||||||||++++++|+++|++|++++|......+.+.. .+. ..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (352)
T 1sb8_A 7 HGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFI 86 (352)
T ss_dssp -----CCCHHHHHHHHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEE
T ss_pred ccchHHHHHHHhhchhcCccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEE
Confidence 3345556666666666667789999999999999999999999999999999965432222111 111 2468889
Q ss_pred ecccccc-----ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCC
Q 013467 170 RHDVVEP-----LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 170 ~~D~~~~-----~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~ 243 (442)
.+|+.+. .+.++|+|||+||.........++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++
T Consensus 87 ~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~ 166 (352)
T 1sb8_A 87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV 166 (352)
T ss_dssp ECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC
T ss_pred ECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCC
Confidence 9998764 45689999999996443223356778899999999999999999997 99999999999987777788
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHcCCCcEEecCC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
|+ .+..+.+.|+.+|+.+|.+++.++++.|++++++||+++|||+.... ...++..++..+..+.++.+++++
T Consensus 167 E~-----~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g 241 (352)
T 1sb8_A 167 ED-----TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDG 241 (352)
T ss_dssp TT-----CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSS
T ss_pred CC-----CCCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCC
Confidence 87 45566789999999999999999888899999999999999975322 125677788888888888888889
Q ss_pred ceeEeccCHHHHHHHHHHHHcCC--C-CccEEecCCCccCHHHHHHHHHHHh---CCCCce--EeCCCCCCCCCccccCh
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGE--H-VGPFNLGNPGEFTMLELAQVVQETI---DPNAKI--EFRPNTEDDPHKRKPDI 393 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~--~-~g~~~i~~~~~~s~~dl~~~l~~~~---g~~~~~--~~~~~~~~~~~~~~~d~ 393 (442)
++.++|+|++|+|++++.++.+. . .++||+++++.+|+.|+++.+.+.+ |.+..+ .+.+..........+|+
T Consensus 242 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~ 321 (352)
T 1sb8_A 242 ETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADI 321 (352)
T ss_dssp CCEECCEEHHHHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCC
T ss_pred CceEeeEEHHHHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCH
Confidence 99999999999999999998863 2 3499999999999999999999999 877652 23333333445678899
Q ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 394 SRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 394 ~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
+|++++|||+|+++++++|+++++||+++.
T Consensus 322 ~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 322 SKAAKLLGYAPKYDVSAGVALAMPWYIMFL 351 (352)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999998899999999999998753
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=344.53 Aligned_cols=304 Identities=23% Similarity=0.370 Sum_probs=250.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEecccccc-----ccC--CCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEP-----LLL--EVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~-----~~~--~~d~Vi 185 (442)
.+|+||||||+||||++++++|+++|++|++++|......+..... ....++.++.+|+.+. .+. ++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 4579999999999999999999999999999998755433222111 1134678889998765 233 799999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
|+||..........+...+++|+.++.+++++|++.++ +|||+||..+||.....+++|+ .+..+.+.|+.+|+
T Consensus 84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y~~sK~ 158 (341)
T 3enk_A 84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPYGQTKL 158 (341)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHHHHHHH
T ss_pred ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC-----CCCCCCChhHHHHH
Confidence 99997654444556778899999999999999999997 9999999999998888888888 56667789999999
Q ss_pred HHHHHHHHHHhhcC-CcEEEEeeCceeCCCCc------cC--CCchHHHHHHHHHcC-CCcEEec------CCceeEecc
Q 013467 265 TAETLTMDYHRGAG-VEVRIARIFNTYGPRMC------ID--DGRVVSNFVAQALRK-EPLTVYG------DGKQTRSFQ 328 (442)
Q Consensus 265 ~~E~~v~~~~~~~g-~~~~iiRp~~v~G~~~~------~~--~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~v 328 (442)
++|.+++.++.+.+ ++++++||+++|||+.. .. ...++..+....... ..+.+++ ++++.++|+
T Consensus 159 ~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 238 (341)
T 3enk_A 159 MAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 238 (341)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEE
T ss_pred HHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeE
Confidence 99999999988775 99999999999999542 11 134555444433332 5566677 788999999
Q ss_pred CHHHHHHHHHHHHcC----CCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCc
Q 013467 329 FVSDLVEGLMRLMEG----EHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~----~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p 404 (442)
|++|+|++++.++++ ...++||+++++.+++.|+++.+.+.+|.+..+...+....+.....+|++|+++.|||+|
T Consensus 239 ~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 318 (341)
T 3enk_A 239 HVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKA 318 (341)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHCCCC
T ss_pred EHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcCCCC
Confidence 999999999999986 2345999999999999999999999999998888877777777788999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHh
Q 013467 405 KVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 405 ~~~l~e~l~~~~~~~~~~~ 423 (442)
+++++++|+++++||+++.
T Consensus 319 ~~~l~~~l~~~~~~~~~~~ 337 (341)
T 3enk_A 319 ERDLERMCADHWRWQENNP 337 (341)
T ss_dssp CCCHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999998764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=348.59 Aligned_cols=296 Identities=24% Similarity=0.304 Sum_probs=246.6
Q ss_pred CcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEE
Q 013467 110 LGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQI 184 (442)
Q Consensus 110 ~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~V 184 (442)
.....++|+|||||||||||++|+++|+++|++|++++|.... .++.++.+|+.+. .+.++|+|
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~v 81 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAV 81 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEE
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEE
Confidence 3455667899999999999999999999999999999986432 3567888888664 46789999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccC--CCCCCCCCCCCCCCCCCCCCChhHH
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~--~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
||+|+..... .......+++|+.++.+++++|++.++ +|||+||.++|+. ....++.|+ .+..+.+.|+.
T Consensus 82 ih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y~~ 154 (347)
T 4id9_A 82 LHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPYGL 154 (347)
T ss_dssp EECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHHHH
T ss_pred EECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChHHH
Confidence 9999865432 223478899999999999999999997 9999999999997 566678888 56677899999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCcee-------------CCCCccC---------CCchHHHHHHHHHcCCCcEEec
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTY-------------GPRMCID---------DGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~-------------G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+|+.+|.+++.++++.+++++++||+++| ||+.... ...++..++.....+.++.+++
T Consensus 155 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 234 (347)
T 4id9_A 155 TKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILA 234 (347)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeC
Confidence 99999999999998889999999999999 7753221 2466778888888888888888
Q ss_pred CCceeEec----cCHHHHHHHHHHHHcCCC--CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccCh
Q 013467 320 DGKQTRSF----QFVSDLVEGLMRLMEGEH--VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDI 393 (442)
Q Consensus 320 ~~~~~~~~----v~v~Dva~ai~~~l~~~~--~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~ 393 (442)
++.+.++| +|++|+|++++.+++++. .++||+++++.+|+.|+++.+.+.+|.+..+...+.. +....+|+
T Consensus 235 ~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---~~~~~~d~ 311 (347)
T 4id9_A 235 RNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD---GVYYHTSN 311 (347)
T ss_dssp ECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC---CCBCCBCC
T ss_pred CCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc---ccccccCH
Confidence 88888999 999999999999999874 3599999999999999999999999998777655433 33788999
Q ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHhhcc
Q 013467 394 SRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGD 426 (442)
Q Consensus 394 ~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~~ 426 (442)
+|++++|||+|+++++++|+++++||+++...+
T Consensus 312 ~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 344 (347)
T 4id9_A 312 ERIRNTLGFEAEWTMDRMLEEAATARRQRLAKE 344 (347)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999887543
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=339.30 Aligned_cols=301 Identities=25% Similarity=0.426 Sum_probs=245.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCC-CccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTG-RKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
+|+||||||+||||++++++|+++| ++|++++|.... ..+.+.......++.++.+|+.+. ++.++|+|||+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL 82 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence 5789999999999999999999996 899999986422 222222211235788899998764 34579999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
||.........++..++++|+.++.+++++|.+.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|+.
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~ 157 (336)
T 2hun_A 83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAA 157 (336)
T ss_dssp CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT-----BCCCCCSHHHHHHHH
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC-----CCCCCCCccHHHHHH
Confidence 996543223346778899999999999999998873 9999999999997766678887 456667899999999
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
+|.+++.++++.|++++++||+++|||+.. ...++..++..+..+..+.+++++.+.++|+|++|+|++++.+++++.
T Consensus 158 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~ 235 (336)
T 2hun_A 158 SDMLVLGWTRTYNLNASITRCTNNYGPYQF--PEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE 235 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECEEESTTCC--TTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCEEEEeeeeeeCcCCC--cCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC
Confidence 999999998888999999999999999852 245677788888888888888888899999999999999999998766
Q ss_pred Cc-cEEecCCCccCHHHHHHHHHHHhCCCCc-eEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 346 VG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 346 ~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
.| +||+++++.+++.|+++.+.+.+|.+.. +.+.+..........+|++|++++|||+|+++++++|+++++||++..
T Consensus 236 ~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 315 (336)
T 2hun_A 236 SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNE 315 (336)
T ss_dssp TTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHTH
T ss_pred CCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 55 9999999999999999999999998653 444433333334567899999999999999999999999999998763
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=339.12 Aligned_cols=294 Identities=31% Similarity=0.483 Sum_probs=245.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A~ 189 (442)
|+||||||+||||++++++|+++|++|++++|........+ . .++.++.+|+.+. .+. ++|+|||+|+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~----~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 75 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV----P-KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAA 75 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGS----C-TTCCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhc----c-cCeEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence 58999999999999999999999999999988543322211 1 3567888888764 334 7999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecC-ccccC-CCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS-EVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~-~vy~~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
.........++...+++|+.++.+++++|++.++ +||++||. .+||. ....+++|+ .+..+.+.|+.+|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~ 150 (311)
T 2p5y_A 76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET-----WPPRPKSPYAASKAAF 150 (311)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-----CCCCCCChHHHHHHHH
Confidence 6543333456778899999999999999999987 99999999 89986 455577777 4555678999999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCCcEEe-----cCCceeEeccCHHHHHHHHHHH
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTVY-----GDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
|.+++.++++.|++++++||+++|||+..... ..++..++..+..+.++.++ +++.+.++|+|++|+|++++.+
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~ 230 (311)
T 2p5y_A 151 EHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALA 230 (311)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHH
Confidence 99999998888999999999999999764322 45677788888888888877 8888899999999999999999
Q ss_pred HcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHH
Q 013467 341 MEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 341 l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~ 420 (442)
++++ .++||+++++.+|+.|+++.+.+.+|.+.++.+.+....+.....+|++|+++ |||+|+++++++|+++++||+
T Consensus 231 ~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~ 308 (311)
T 2p5y_A 231 LFSL-EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFR 308 (311)
T ss_dssp HHHC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHH
T ss_pred HhCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHH
Confidence 9876 56999999999999999999999999988877666555556678899999999 999999999999999999997
Q ss_pred HH
Q 013467 421 QR 422 (442)
Q Consensus 421 ~~ 422 (442)
++
T Consensus 309 ~~ 310 (311)
T 2p5y_A 309 GA 310 (311)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=341.31 Aligned_cols=301 Identities=24% Similarity=0.395 Sum_probs=247.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 188 (442)
||+||||||+||||++++++|+++ |++|++++|............+...++.++.+|+.+. ++.++|+|||+|
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 83 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA 83 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECC
Confidence 579999999999999999999999 8999999996432222222222235788999998764 466899999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCC------------CCCCCCCCCCCCCCCCC
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ------------HPQKETYWGNVNPIGVR 256 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~------------~~~~E~~~~~~~~~~~~ 256 (442)
|.........++...+++|+.++.+++++|.+.+++|||+||.++||.... .+++|+ .+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~~~ 158 (348)
T 1oc2_A 84 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYNPS 158 (348)
T ss_dssp SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCCCC
T ss_pred cccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCCCC
Confidence 965432233467788999999999999999998889999999999986532 456666 456677
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
+.|+.+|+.+|.+++.++++.|++++++||+++|||+.. ...++..++..+..+.++.+++++.+.++|+|++|+|++
T Consensus 159 ~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~ 236 (348)
T 1oc2_A 159 SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQH--IEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTG 236 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCC--TTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCC--ccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHH
Confidence 899999999999999998888999999999999999852 245677788888888888888888899999999999999
Q ss_pred HHHHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCc-eEeCCCCCCCCCccccChHHHHHhhCCCcccC-HHHHHH
Q 013467 337 LMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKPDISRAKELLGWEPKVS-LRKGLP 413 (442)
Q Consensus 337 i~~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~-l~e~l~ 413 (442)
++.+++++..| +||++++..+++.|+++.+.+.+|.+.. +.+.+..........+|++|++++|||+|+++ ++++|+
T Consensus 237 ~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~ 316 (348)
T 1oc2_A 237 VWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLE 316 (348)
T ss_dssp HHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHH
T ss_pred HHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCCCcHHHHHH
Confidence 99999876555 9999999999999999999999998753 44433333333456789999999999999988 999999
Q ss_pred HHHHHHHHHh
Q 013467 414 KMVKDFRQRI 423 (442)
Q Consensus 414 ~~~~~~~~~~ 423 (442)
++++||++..
T Consensus 317 ~~~~~~~~~~ 326 (348)
T 1oc2_A 317 ETIQWYTDNQ 326 (348)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHhh
Confidence 9999998753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=338.48 Aligned_cols=300 Identities=29% Similarity=0.486 Sum_probs=248.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC---C---CeEEEEeCCCCC-CccccccccCCCceeEEecccccc-----ccCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR---G---DSVIVVDNFFTG-RKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~---g---~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~V 184 (442)
|+|||||||||||++++++|+++ | ++|++++|.... ..+.+.......++.++.+|+.+. .+.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 58999999999999999999997 8 999999986432 222222211235788999998764 45689999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHH
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGK 263 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (442)
||+||.........++..++++|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCchHHHH
Confidence 999996543223346778899999999999999999997 9999999999987666677777 4666778999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
+.+|.+++.++++.|++++++||+++|||+.. ...++..++..+..+.++.+++++.+.++|+|++|+|++++.++++
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 233 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQH--PEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCC--TTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCC--CCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhC
Confidence 99999999998888999999999999999852 2456778888888888888888889999999999999999999987
Q ss_pred CCCc-cEEecCCCccCHHHHHHHHHHHhCCCCc-eEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHH
Q 013467 344 EHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 344 ~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~ 421 (442)
+..| +||+++++.+|+.|+++.+.+.+|.+.. +.+.+..........+|++|++++|||+|+++++++|+++++||++
T Consensus 234 ~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 313 (337)
T 1r6d_A 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRE 313 (337)
T ss_dssp CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Confidence 6555 9999999999999999999999998753 4444333333345678999999999999999999999999999987
Q ss_pred Hh
Q 013467 422 RI 423 (442)
Q Consensus 422 ~~ 423 (442)
..
T Consensus 314 ~~ 315 (337)
T 1r6d_A 314 NR 315 (337)
T ss_dssp CH
T ss_pred ch
Confidence 54
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=349.34 Aligned_cols=306 Identities=27% Similarity=0.387 Sum_probs=244.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
..++|+|||||||||||++++++|+++| ++|++++|......+.+. ...++.++.+|+.+. ++.++|+|||
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 105 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFH 105 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence 3567899999999999999999999999 999999986543322221 235788899998764 5678999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccccCCCCCCCC--CCCCCCCCCC-CCCChhHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQHPQK--ETYWGNVNPI-GVRSCYDE 261 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy~~~~~~~~~--E~~~~~~~~~-~~~~~Y~~ 261 (442)
+|+.........++...+++|+.++.+++++|++. ++ +|||+||.++|+.....+++ |++|. .+. .+.+.|+.
T Consensus 106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~~ 183 (377)
T 2q1s_A 106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYSM 183 (377)
T ss_dssp CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHHH
T ss_pred CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchHH
Confidence 99965433233467788999999999999999998 87 99999999999977666777 77432 144 56689999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCC---------ccC--CCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM---------CID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
+|+.+|.+++.++++.|++++++||+++||++. ... ...++..++..+..+.++.+++++++.++|+|+
T Consensus 184 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 263 (377)
T 2q1s_A 184 SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFV 263 (377)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEH
Confidence 999999999999888899999999999999975 111 045678888888888888778888899999999
Q ss_pred HHHHHH-HHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCC-ccccChHHHHHhhCCCcccCH
Q 013467 331 SDLVEG-LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPH-KRKPDISRAKELLGWEPKVSL 408 (442)
Q Consensus 331 ~Dva~a-i~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~d~~k~~~~LG~~p~~~l 408 (442)
+|+|++ ++.+++++..|+||+++++.+++.|+++.+.+.+|.+..+.+.+....... ...+|++|++++|||+|++++
T Consensus 264 ~Dva~a~i~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~~~lG~~p~~~l 343 (377)
T 2q1s_A 264 EDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSI 343 (377)
T ss_dssp HHHHHHHHHHHHHCCTTEEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHHHHHCCCCCCCH
T ss_pred HHHHHHHHHHHHhcCCCCeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHHHHcCCCCCCCH
Confidence 999999 999998876679999999999999999999999998877665554333444 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 013467 409 RKGLPKMVKDFRQRI 423 (442)
Q Consensus 409 ~e~l~~~~~~~~~~~ 423 (442)
+++|+++++||+++.
T Consensus 344 ~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 344 DDGLRKTIEWTKANL 358 (377)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=354.20 Aligned_cols=307 Identities=24% Similarity=0.422 Sum_probs=250.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEecccc-cc-----ccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV-EP-----LLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~~-----~~~~~d~Vih 186 (442)
++||+|||||||||||++|+++|+++ |++|++++|....... .....+++++.+|+. +. .+.++|+|||
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD----LVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG----GGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh----hccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 56789999999999999999999998 9999999996533222 123368899999998 54 4457999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCC-CCCCC-CCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPI-GVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~-~~~~~-~~~~~Y~~sK~ 264 (442)
+|+...+..+..++...+++|+.++.+++++|++.+.+|||+||.++||.....++.|+++. ...+. .+.+.|+.+|+
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~ 177 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQ 177 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHHH
Confidence 99976655555677888999999999999999998889999999999998877788777432 11122 45568999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc------CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
.+|.+++.++++ |++++++||+++|||+... ....++..++..+..+.++.+++++++.++|+|++|+|++++
T Consensus 178 ~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~ 256 (372)
T 3slg_A 178 LMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALM 256 (372)
T ss_dssp HHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHH
Confidence 999999999887 9999999999999998531 234578889999999999999888899999999999999999
Q ss_pred HHHcCCC---C-ccEEecCC-CccCHHHHHHHHHHHhCCCCceEeCCC---------------CCCCCCccccChHHHHH
Q 013467 339 RLMEGEH---V-GPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRPN---------------TEDDPHKRKPDISRAKE 398 (442)
Q Consensus 339 ~~l~~~~---~-g~~~i~~~-~~~s~~dl~~~l~~~~g~~~~~~~~~~---------------~~~~~~~~~~d~~k~~~ 398 (442)
.+++++. . ++||++++ +.+|+.|+++.+.+.+|.+..+...+. .........+|++|+++
T Consensus 257 ~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 336 (372)
T 3slg_A 257 KIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQ 336 (372)
T ss_dssp HHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CCCCBCCHHHHH
T ss_pred HHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccceeecCHHHHHH
Confidence 9999873 3 49999994 899999999999999997654321110 01234567889999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
+|||+|+++++++|+++++||+++...
T Consensus 337 ~lG~~p~~~l~e~l~~~~~~~~~~~~~ 363 (372)
T 3slg_A 337 ELGWAPQFTFDDALRQIFEAYRGHVAD 363 (372)
T ss_dssp HHTCCCCCCHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876543
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=337.13 Aligned_cols=291 Identities=27% Similarity=0.397 Sum_probs=242.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCC--CCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLE--VDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~Vih~ 187 (442)
++|+||||||+||||++++++|+++|++|++++|.... .. + ++.++.+|+.+. ++.+ +|+|||+
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-----l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 81 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-----P---NVEMISLDIMDSQRVKKVISDIKPDYIFHL 81 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-----T---TEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-----c---eeeEEECCCCCHHHHHHHHHhcCCCEEEEc
Confidence 45699999999999999999999999999999996543 11 1 678889998765 2333 8999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccccCC--CCCCCCCCCCCCCCCCCCCChhHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDP--LQHPQKETYWGNVNPIGVRSCYDEGK 263 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy~~~--~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (442)
||.........++...+++|+.++.+++++|++. ++ +|||+||..+|+.. ...+++|+ .+..+.+.|+.+|
T Consensus 82 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~-----~~~~~~~~Y~~sK 156 (321)
T 2pk3_A 82 AAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSK 156 (321)
T ss_dssp CSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTT-----SCCBCCSHHHHHH
T ss_pred CcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCC-----CCCCCCCccHHHH
Confidence 9975443344567889999999999999999876 45 99999999999876 56678887 4556678999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHc---C--CCcEEecCCceeEeccCHHHHHHHHH
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR---K--EPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
+++|.+++.++++.|++++++||+++|||+.. ...++..++..+.. + .++..++++...++|+|++|+|++++
T Consensus 157 ~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 234 (321)
T 2pk3_A 157 ASVGMLARQYVKAYGMDIIHTRTFNHIGPGQS--LGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYW 234 (321)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTTCC--TTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCcccCcCCC--CCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHH
Confidence 99999999998888999999999999999863 23456667766666 6 56777888889999999999999999
Q ss_pred HHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCceEeCC--CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 339 RLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRP--NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 339 ~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~--~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
.+++++..| +||++++..+++.|+++.+.+.+|.+..+...+ ..........+|++|++++|||+|+++++++|+++
T Consensus 235 ~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~ 314 (321)
T 2pk3_A 235 LLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSLFEI 314 (321)
T ss_dssp HHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred HHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHHHHHHH
Confidence 999877544 999999999999999999999999887766554 23334456889999999999999999999999999
Q ss_pred HHHHHH
Q 013467 416 VKDFRQ 421 (442)
Q Consensus 416 ~~~~~~ 421 (442)
++||++
T Consensus 315 ~~~~~~ 320 (321)
T 2pk3_A 315 LQSYRQ 320 (321)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999974
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=342.57 Aligned_cols=305 Identities=28% Similarity=0.422 Sum_probs=251.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
..+||+|||||||||||++++++|+++|++|++++|........ ...++.++.+|+.+. .+.++|+|||+
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~ 100 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNL 100 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-----ccCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence 34578999999999999999999999999999999965432211 124678889998764 46789999999
Q ss_pred cccCCCCcc-cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC-----CCCCCCCCCCCCCCCCCChhH
Q 013467 188 ACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ-----HPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 188 A~~~~~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~-----~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
|+......+ ..++...+++|+.++.+++++|++.++ +|||+||.++|+.... .+++|+++. +..+.+.|+
T Consensus 101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~---~~~~~~~Y~ 177 (379)
T 2c5a_A 101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW---PAEPQDAFG 177 (379)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGS---SBCCSSHHH
T ss_pred ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCC---CCCCCChhH
Confidence 997543222 456888999999999999999999997 9999999999985322 345665321 445568999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCC--chHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHHH
Q 013467 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
.+|+.+|.+++.++++.|++++++||+++|||+...... .++..++..+..+.+ +.+++++.+.++|+|++|+|+++
T Consensus 178 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai 257 (379)
T 2c5a_A 178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHH
Confidence 999999999999988889999999999999997543222 367788888877776 77788888999999999999999
Q ss_pred HHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHH
Q 013467 338 MRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417 (442)
Q Consensus 338 ~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~ 417 (442)
+.+++++..++||+++++.+++.|+++.+.+.+|.+..+...+.+. ......+|++|++++|||+|+++++++|+++++
T Consensus 258 ~~~l~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~ 336 (379)
T 2c5a_A 258 LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYF 336 (379)
T ss_dssp HHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHH
T ss_pred HHHhhccCCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC-CcccccCCHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 9999987667999999999999999999999999887776555432 345567899999999999999999999999999
Q ss_pred HHHHHhhcc
Q 013467 418 DFRQRIFGD 426 (442)
Q Consensus 418 ~~~~~~~~~ 426 (442)
||+++...+
T Consensus 337 ~~~~~~~~~ 345 (379)
T 2c5a_A 337 WIKEQIEKE 345 (379)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHhhh
Confidence 999886543
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=337.33 Aligned_cols=298 Identities=25% Similarity=0.418 Sum_probs=244.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A 188 (442)
||+|+||||+||||++++++|+++|++|++++|......+.+ . .++.++.+|+.+. ++. ++|+|||+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a 75 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI----T-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFA 75 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS----C-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhc----C-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 579999999999999999999999999999998654332211 1 2678889998764 344 799999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
+.........++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+ ++..+.+.|+.+|+.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e 150 (330)
T 2c20_A 76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-----TMTNPTNTYGETKLAIE 150 (330)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCSSHHHHHHHHHH
T ss_pred cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC-----CCCCCCChHHHHHHHHH
Confidence 96543323346778899999999999999999997 9999999999998777788888 45566789999999999
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCcc-------CCCchHHHHHHHHHcC-CCcEEec------CCceeEeccCHHHH
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCI-------DDGRVVSNFVAQALRK-EPLTVYG------DGKQTRSFQFVSDL 333 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~v~v~Dv 333 (442)
.+++.++++.|++++++||+++||++... ....++..++.....+ ..+.+++ ++++.++|+|++|+
T Consensus 151 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dv 230 (330)
T 2c20_A 151 KMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230 (330)
T ss_dssp HHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHH
T ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHH
Confidence 99999988889999999999999996321 1234566665544433 4566665 67889999999999
Q ss_pred HHHHHHHHcCC----CCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCccc-CH
Q 013467 334 VEGLMRLMEGE----HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV-SL 408 (442)
Q Consensus 334 a~ai~~~l~~~----~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l 408 (442)
|++++.+++++ ..++||+++++.+|+.|+++.+.+.+|.+..+...+.....+....+|++|++++|||+|++ ++
T Consensus 231 a~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l 310 (330)
T 2c20_A 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNV 310 (330)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSCCCH
T ss_pred HHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCccCCH
Confidence 99999999764 23599999999999999999999999988877766655555667889999999999999998 99
Q ss_pred HHHHHHHHHHHHHHh
Q 013467 409 RKGLPKMVKDFRQRI 423 (442)
Q Consensus 409 ~e~l~~~~~~~~~~~ 423 (442)
+++|+++++||+++.
T Consensus 311 ~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 311 KTIIEHAWNWHQKQP 325 (330)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=337.92 Aligned_cols=294 Identities=21% Similarity=0.284 Sum_probs=241.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCC--CCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLE--VDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~Vih 186 (442)
+++|+|||||||||||++|+++|+++|+ +. .. . ...++++.+|+.+. .+.+ +|+|||
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~--~~-~-------~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih 67 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LP--GE-D-------WVFVSSKDADLTDTAQTRALFEKVQPTHVIH 67 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CT--TC-E-------EEECCTTTCCTTSHHHHHHHHHHSCCSEEEE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------cc--cc-c-------ccccCceecccCCHHHHHHHHhhcCCCEEEE
Confidence 4678999999999999999999999998 11 00 0 01223344555443 4444 999999
Q ss_pred ecccCCC-CcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC-hhHHHH
Q 013467 187 LACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS-CYDEGK 263 (442)
Q Consensus 187 ~A~~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK 263 (442)
+|+.... .....++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+++... +..+.. .|+.+|
T Consensus 68 ~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y~~sK 146 (319)
T 4b8w_A 68 LAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNG-PPHNSNFGYSYAK 146 (319)
T ss_dssp CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBS-CCCSSSHHHHHHH
T ss_pred CceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccC-CCCCCcchHHHHH
Confidence 9997442 223456788899999999999999999997 899999999999888888998854321 333434 599999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC--CCchHHHHHHH----HHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID--DGRVVSNFVAQ----ALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
+.+|.+++.++++.|++++++||+++|||+.... ...++..++.. +..+.++.+++++++.++|+|++|+|+++
T Consensus 147 ~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~ 226 (319)
T 4b8w_A 147 RMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLF 226 (319)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHH
Confidence 9999999999988899999999999999986422 34566777776 78888999999999999999999999999
Q ss_pred HHHHcCCCC---ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHH
Q 013467 338 MRLMEGEHV---GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414 (442)
Q Consensus 338 ~~~l~~~~~---g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~ 414 (442)
+.+++++.. ++||+++++.+|+.|+++.+.+.+|.+..+.+.+..........+|++|++++|||.|.++++++|++
T Consensus 227 ~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~~ 306 (319)
T 4b8w_A 227 IWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKE 306 (319)
T ss_dssp HHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCTTCCCCCHHHHHHH
T ss_pred HHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcCCCCCCCHHHHHHH
Confidence 999987432 38999999999999999999999999988888776666667788999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 013467 415 MVKDFRQRIF 424 (442)
Q Consensus 415 ~~~~~~~~~~ 424 (442)
+++||+++..
T Consensus 307 ~~~~~~~~~~ 316 (319)
T 4b8w_A 307 TCAWFTDNYE 316 (319)
T ss_dssp HHHHHHHSCS
T ss_pred HHHHHHHHHh
Confidence 9999987643
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=334.92 Aligned_cols=306 Identities=21% Similarity=0.280 Sum_probs=243.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc-----ccC--CCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP-----LLL--EVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~-----~~~--~~d~Vih 186 (442)
.+|+||||||+||||++++++|+++|++|++++|............+ ...++.++.+|+.+. .+. ++|+|||
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih 92 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 46699999999999999999999999999999996543211111111 234678899998764 233 4799999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC--CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
+||.........++...+++|+.++.+++++|++.+ .+|||+||.++|+.....+++|+ .+..+.+.|+.+|+
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~ 167 (335)
T 1rpn_A 93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKL 167 (335)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-----cCCCCCChhHHHHH
Confidence 999654333345678889999999999999999987 39999999999998776778887 46667789999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
.+|.+++.++++.+++++++||+++|||+..... ...+..++..+..+.. ...++++++.++|+|++|+|++++.+++
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~ 247 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQ 247 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHh
Confidence 9999999998888999999999999999752211 1234555666666753 4456888899999999999999999999
Q ss_pred CCCCccEEecCCCccCHHHHHHHHHHHhCCCCc--eEeCC--CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHH
Q 013467 343 GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK--IEFRP--NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418 (442)
Q Consensus 343 ~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~ 418 (442)
++..++||+++++.+|+.|+++.+.+.+|.+.. +.+.+ ..+.......+|++|++++|||+|+++++++|+++++|
T Consensus 248 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~ 327 (335)
T 1rpn_A 248 QDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEA 327 (335)
T ss_dssp SSSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHH
Confidence 887789999999999999999999999998642 33322 12233445678999999999999999999999999999
Q ss_pred HHHHhhc
Q 013467 419 FRQRIFG 425 (442)
Q Consensus 419 ~~~~~~~ 425 (442)
|+++...
T Consensus 328 ~~~~~~~ 334 (335)
T 1rpn_A 328 DLRRVSR 334 (335)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 9987643
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=334.71 Aligned_cols=302 Identities=25% Similarity=0.417 Sum_probs=243.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC------Cccccccc--cCCCceeEEecccccc-----ccC--C
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG------RKENVMHH--FGNPNFELIRHDVVEP-----LLL--E 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~------~~~~~~~~--~~~~~v~~~~~D~~~~-----~~~--~ 180 (442)
+|+|+||||+||||++++++|+++|++|++++|.... ..+..... ....++.++.+|+.+. ++. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999999999999986433 11111110 0124678889998764 334 7
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CCh
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSC 258 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~ 258 (442)
+|+|||+||.........++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+ .+.
T Consensus 82 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~-----~~~~p~~~~ 156 (348)
T 1ek6_A 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA-----HPTGGCTNP 156 (348)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSSH
T ss_pred CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCC-----CCCCCCCCc
Confidence 9999999996543333456778899999999999999999987 9999999999998777788887 34444 689
Q ss_pred hHHHHHHHHHHHHHHHhh-cCCcEEEEeeCceeCCCCc----cC----CCchHHHHHHHHH-cCCCcEEec------CCc
Q 013467 259 YDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPRMC----ID----DGRVVSNFVAQAL-RKEPLTVYG------DGK 322 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~-~g~~~~iiRp~~v~G~~~~----~~----~~~~~~~~~~~~~-~~~~~~~~~------~~~ 322 (442)
|+.+|+.+|.+++.++++ .+++++++||+++|||+.. .. ...++..++.... .+..+.+++ +++
T Consensus 157 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 157 YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred hHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 999999999999999876 2399999999999999531 11 2446677666666 566777776 677
Q ss_pred eeEeccCHHHHHHHHHHHHcCC--CC--ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHH
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE--HV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKE 398 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~--~~--g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 398 (442)
+.++|+|++|+|++++.+++++ .. ++||+++++.+|+.|+++.+.+.+|.+..+...+....+.....+|++|+++
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 316 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQE 316 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHH
T ss_pred eEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHHHHH
Confidence 8899999999999999999764 33 4999999999999999999999999887776655554455677899999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHH
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~ 422 (442)
+|||+|+++++++|+++++||+++
T Consensus 317 ~lG~~p~~~l~~~l~~~~~w~~~~ 340 (348)
T 1ek6_A 317 ELGWTAALGLDRMCEDLWRWQKQN 340 (348)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=333.17 Aligned_cols=303 Identities=25% Similarity=0.457 Sum_probs=243.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
|+|||||||||||++++++|+++ |++|++++|...... ......++.++.+|+.+. .+.++|+|||+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~ 76 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH----HhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence 58999999999999999999998 899999999643211 112345788999998762 2347999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCC-CCCC-CCCChhHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGN-VNPI-GVRSCYDEGKRTAE 267 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~-~~~~-~~~~~Y~~sK~~~E 267 (442)
...+..+..++...+++|+.++.+++++|++.+.+|||+||.++|+.....+++|+++.. ..+. .+.+.|+.+|+.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e 156 (345)
T 2bll_A 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (345)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHH
Confidence 755433345677889999999999999999988899999999999987767777875421 1111 23458999999999
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCcc------CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHH
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l 341 (442)
.+++.++++.|++++++||+++|||+... ....++..++..+..+.++.+++++++.++|+|++|+|++++.++
T Consensus 157 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 236 (345)
T 2bll_A 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (345)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHH
Confidence 99999988889999999999999997532 113467788888888988888888889999999999999999999
Q ss_pred cCCC---Cc-cEEecCCC-ccCHHHHHHHHHHHhCCCCceEeCCCCC---------------CCCCccccChHHHHHhhC
Q 013467 342 EGEH---VG-PFNLGNPG-EFTMLELAQVVQETIDPNAKIEFRPNTE---------------DDPHKRKPDISRAKELLG 401 (442)
Q Consensus 342 ~~~~---~g-~~~i~~~~-~~s~~dl~~~l~~~~g~~~~~~~~~~~~---------------~~~~~~~~d~~k~~~~LG 401 (442)
+++. .| +||+++++ .+|+.|+++.+.+.+|.+......+... .......+|++|++++||
T Consensus 237 ~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 316 (345)
T 2bll_A 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLD 316 (345)
T ss_dssp HCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHC
T ss_pred hhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhcccHHHHHHhcC
Confidence 8763 34 99999986 8999999999999998764322212110 123456789999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHh
Q 013467 402 WEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 402 ~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
|+|+++++++|+++++||++..
T Consensus 317 ~~p~~~l~~~l~~~~~~~~~~~ 338 (345)
T 2bll_A 317 WEPKIDMQETIDETLDFFLRTV 338 (345)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHS
T ss_pred CCccccHHHHHHHHHHHHHHcC
Confidence 9999999999999999998764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-42 Score=334.61 Aligned_cols=309 Identities=27% Similarity=0.421 Sum_probs=242.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc-cccccCCCceeEEecccccc-----ccCC--CCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN-VMHHFGNPNFELIRHDVVEP-----LLLE--VDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~Vih~ 187 (442)
||+|||||||||||++++++|+++|++|++++|........ ........++.++.+|+.+. .+.+ +|+|||+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 57899999999999999999999999999999853222111 11111223578889998764 3445 9999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCCCC--C---------CCCCCCC
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKETY--W---------GNVNPIG 254 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E~~--~---------~~~~~~~ 254 (442)
||.........++...+++|+.++.+++++|++.++ +|||+||.++|+.....+..|+. | ....+..
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~ 160 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD 160 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence 996543222346778899999999999999999884 79999999999875544332221 0 0113455
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCC-----CcEEecCCceeEecc
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKE-----PLTVYGDGKQTRSFQ 328 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v 328 (442)
+.+.|+.+|+.+|.+++.++++.|++++++||+++||++.... ...++..++...+.+. ++..++++++.++|+
T Consensus 161 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i 240 (347)
T 1orr_A 161 FHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECE
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeE
Confidence 6789999999999999999888899999999999999975322 2346667777666665 677788999999999
Q ss_pred CHHHHHHHHHHHHcCC--CCc-cEEecCCC--ccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCC
Q 013467 329 FVSDLVEGLMRLMEGE--HVG-PFNLGNPG--EFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWE 403 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~--~~g-~~~i~~~~--~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~ 403 (442)
|++|+|++++.+++++ ..| +||++++. .+|+.|+++.+.+.+|.+..+...+..........+|++|++++|||+
T Consensus 241 ~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 320 (347)
T 1orr_A 241 HAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWS 320 (347)
T ss_dssp EHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCC
T ss_pred EHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecCHHHHHHHHCCC
Confidence 9999999999999862 245 99999886 499999999999999998877766654445556789999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHhh
Q 013467 404 PKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 404 p~~~l~e~l~~~~~~~~~~~~ 424 (442)
|+++++++|+++++||++...
T Consensus 321 p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 321 PKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp CCSCHHHHHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 988999999999999988754
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=332.89 Aligned_cols=292 Identities=24% Similarity=0.384 Sum_probs=238.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASP 193 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~ 193 (442)
+|+|||||||||||++++++|+++|++|++++|.. ..++.+.+.....+. ++|+|||+|+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~--------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~ 68 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------ELNLLDSRAVHDFFASERIDQVYLAAAKVGG 68 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc--------------cCCccCHHHHHHHHHhcCCCEEEEcCeecCC
Confidence 46899999999999999999999999999987642 112222233334555 89999999986432
Q ss_pred C-cccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHH
Q 013467 194 V-HYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLT 270 (442)
Q Consensus 194 ~-~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v 270 (442)
. ....++...+++|+.++.+++++|++.++ +|||+||..+|+.....+++|+++.. .+..+. +.|+.+|+.+|.++
T Consensus 69 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~E~~~ 147 (321)
T 1e6u_A 69 IVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPYAIAKIAGIKLC 147 (321)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHHHHHHHHHHHHH
T ss_pred cchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCccHHHHHHHHHHH
Confidence 1 13346778899999999999999999997 99999999999987777888875421 133332 58999999999999
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHc----C-CCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALR----K-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
+.++++.+++++++||+++|||+.... ...++..++..+.. | .++.+++++++.++|+|++|+|++++.++++
T Consensus 148 ~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~ 227 (321)
T 1e6u_A 148 ESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMEL 227 (321)
T ss_dssp HHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhC
Confidence 999888899999999999999976321 23567777776654 3 5677788889999999999999999999987
Q ss_pred CCC----------ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 344 EHV----------GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 344 ~~~----------g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
+.. ++||+++++.+|+.|+++.+.+.+|.+..+.+.+..+.......+|++|+++ |||+|+++++++|+
T Consensus 228 ~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~l~ 306 (321)
T 1e6u_A 228 AHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLA 306 (321)
T ss_dssp CHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHH-TTCCCCCCHHHHHH
T ss_pred cccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHHHh-cCCccCCcHHHHHH
Confidence 643 5999999999999999999999999988777665544556678899999999 99999989999999
Q ss_pred HHHHHHHHHh
Q 013467 414 KMVKDFRQRI 423 (442)
Q Consensus 414 ~~~~~~~~~~ 423 (442)
++++||+++.
T Consensus 307 ~~~~~~~~~~ 316 (321)
T 1e6u_A 307 STYQWFLENQ 316 (321)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9999998763
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=332.41 Aligned_cols=299 Identities=26% Similarity=0.468 Sum_probs=242.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCC-CCccccccccCCCceeEEecccccc-----ccC--CCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFT-GRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~ 187 (442)
|+||||||+||||++++++|+++ |++|++++|... ...+.+.......++.++.+|+.+. .+. ++|+|||+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 58999999999999999999998 799999998642 2222222221235788999998774 344 79999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc--CC--------eEEEeecCccccCCCC--C--------CCCCCCC
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--GA--------RFLLTSTSEVYGDPLQ--H--------PQKETYW 247 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--g~--------r~i~iSS~~vy~~~~~--~--------~~~E~~~ 247 (442)
||.........++..++++|+.++.+++++|.+. ++ +|||+||.++||.... . +++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~-- 158 (361)
T 1kew_A 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET-- 158 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT--
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC--
Confidence 9975432233467788999999999999999987 63 8999999999986542 1 56666
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+..+.+.|+.+|+.+|.+++.++++.|++++++||++||||+.. ...++..++..+..+.++.+++++.+.++|
T Consensus 159 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (361)
T 1kew_A 159 ---TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (361)
T ss_dssp ---SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC--TTSHHHHHHHHHHHTCCEEEETTSCCEEEE
T ss_pred ---CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCC--cccHHHHHHHHHHcCCCceEcCCCceeEee
Confidence 456677899999999999999998888999999999999999852 245677788888888888888888899999
Q ss_pred cCHHHHHHHHHHHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCc--------eEeCCCCCCCCCccccChHHHHH
Q 013467 328 QFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAK--------IEFRPNTEDDPHKRKPDISRAKE 398 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~--------~~~~~~~~~~~~~~~~d~~k~~~ 398 (442)
+|++|+|++++.+++++..| +||++++..+++.|+++.+.+.+|.+.. +.+.+..........+|++|+++
T Consensus 234 i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~k~~~ 313 (361)
T 1kew_A 234 LYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISR 313 (361)
T ss_dssp EEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHH
T ss_pred EEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeecCHHHHHH
Confidence 99999999999999876665 9999999999999999999999886432 23323222233456889999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHH
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~ 422 (442)
+|||+|+++++++|+++++||++.
T Consensus 314 ~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 314 ELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HhCCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=338.06 Aligned_cols=304 Identities=25% Similarity=0.384 Sum_probs=242.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHH-hCCCeEEEEeCCCCCC--------cccccc---cc-C---CCc---eeEEecccccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLI-ARGDSVIVVDNFFTGR--------KENVMH---HF-G---NPN---FELIRHDVVEP 176 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll-~~g~~V~~l~r~~~~~--------~~~~~~---~~-~---~~~---v~~~~~D~~~~ 176 (442)
+|+||||||+||||++++++|+ ++|++|++++|..... .+.+.. .+ . ..+ +.++.+|+.+.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4699999999999999999999 9999999999865432 111110 00 0 123 78899998764
Q ss_pred -----ccC--C-CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCC-------CC
Q 013467 177 -----LLL--E-VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL-------QH 240 (442)
Q Consensus 177 -----~~~--~-~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~-------~~ 240 (442)
++. + +|+|||+||.........++..++++|+.++.+++++|++.++ +|||+||.++|+... ..
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~ 161 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccccc
Confidence 233 5 9999999997543323356778999999999999999999997 999999999998765 56
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc-------CCCchHHHHH----HHH
Q 013467 241 PQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI-------DDGRVVSNFV----AQA 309 (442)
Q Consensus 241 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~----~~~ 309 (442)
+++|+ .+..+.+.|+.+|+++|.+++.++++.|++++++||+++|||+... ....++..++ ..+
T Consensus 162 ~~~E~-----~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (397)
T 1gy8_A 162 PIDIN-----AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDI 236 (397)
T ss_dssp CBCTT-----SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHH
T ss_pred CcCcc-----CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHH
Confidence 77777 4556678999999999999999988889999999999999996421 1244565554 244
Q ss_pred HcCC------------CcEEec------CCceeEeccCHHHHHHHHHHHHcCC--C-----C---ccEEecCCCccCHHH
Q 013467 310 LRKE------------PLTVYG------DGKQTRSFQFVSDLVEGLMRLMEGE--H-----V---GPFNLGNPGEFTMLE 361 (442)
Q Consensus 310 ~~~~------------~~~~~~------~~~~~~~~v~v~Dva~ai~~~l~~~--~-----~---g~~~i~~~~~~s~~d 361 (442)
..+. ++.+++ ++++.++|+|++|+|++++.+++++ . . ++||+++++.+++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e 316 (397)
T 1gy8_A 237 APDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVRE 316 (397)
T ss_dssp SCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHH
T ss_pred HhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHH
Confidence 4443 466666 6788999999999999999998753 2 2 699999999999999
Q ss_pred HHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCccc-CHHHHHHHHHHHHHHHhh
Q 013467 362 LAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV-SLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 362 l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~~~~~~~~~~ 424 (442)
+++.+.+.+|.+.++...+..........+|++|++++|||+|++ +++++|+++++||+++..
T Consensus 317 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 317 VIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPN 380 (397)
T ss_dssp HHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhccc
Confidence 999999999988877766555555667889999999999999999 999999999999987743
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=331.74 Aligned_cols=304 Identities=22% Similarity=0.287 Sum_probs=241.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~ 187 (442)
++|+||||||+||||++++++|+++|++|++++|................++.++.+|+.+. .+. ++|+|||+
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 87 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM 87 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence 45799999999999999999999999999999996543322111111134678899998774 233 38999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCC-CCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQ-HPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~-~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
||.........++...+++|+.++.+++++|++.+ + +|||+||..+||.... .++.|+ .+..+.+.|+.+|+
T Consensus 88 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y~~sK~ 162 (357)
T 1rkx_A 88 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSKG 162 (357)
T ss_dssp CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHHH
T ss_pred CCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCccHHHHH
Confidence 98643223345677889999999999999999886 6 9999999999987543 356666 45556789999999
Q ss_pred HHHHHHHHHHhhc---------CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 265 TAETLTMDYHRGA---------GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 265 ~~E~~v~~~~~~~---------g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
.+|.+++.++++. |++++++||+++|||+... ...++..++..+..+..+.+ +++.+.++|+|++|+|+
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~v~v~Dva~ 240 (357)
T 1rkx_A 163 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQPVII-RNPHAIRPWQHVLEPLS 240 (357)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTTCCEEC-SCTTCEECCEETHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc-cccHHHHHHHHHhcCCCEEE-CCCCCeeccEeHHHHHH
Confidence 9999999987754 8999999999999997532 24678888888888877664 46678899999999999
Q ss_pred HHHHHHcC------CCCccEEecCC--CccCHHHHHHHHHHHhCCCCceEeCCC-CCCCCCccccChHHHHHhhCCCccc
Q 013467 336 GLMRLMEG------EHVGPFNLGNP--GEFTMLELAQVVQETIDPNAKIEFRPN-TEDDPHKRKPDISRAKELLGWEPKV 406 (442)
Q Consensus 336 ai~~~l~~------~~~g~~~i~~~--~~~s~~dl~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~LG~~p~~ 406 (442)
+++.+++. ...++||++++ +.+|+.|+++.+.+.+|.+..+.+.+. .........+|++|++++|||+|++
T Consensus 241 a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 320 (357)
T 1rkx_A 241 GYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRW 320 (357)
T ss_dssp HHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCC
T ss_pred HHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhCCCcCC
Confidence 99998874 23459999974 689999999999999998877655432 2233456789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 013467 407 SLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 407 ~l~e~l~~~~~~~~~~~~~ 425 (442)
+++++|+++++||++....
T Consensus 321 ~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 321 NLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp CHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=324.40 Aligned_cols=274 Identities=19% Similarity=0.233 Sum_probs=232.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~~ 194 (442)
|+|||||||||||++++++|+++|++|++++|. ..++.+.+..+..+. ++|+|||+|+.....
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~ 70 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK---------------LLDITNISQVQQVVQEIRPHIIIHCAAYTKVD 70 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT---------------TSCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc---------------ccCCCCHHHHHHHHHhcCCCEEEECCcccChH
Confidence 389999999999999999999999999999882 112222233333444 699999999976554
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~ 274 (442)
....++...+++|+.++.+++++|++.+++|||+||.++|+.....+++|+ ++..+.+.|+.+|+.+|.+++.+.
T Consensus 71 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~~~~ 145 (287)
T 3sc6_A 71 QAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEF-----HNPAPINIYGASKYAGEQFVKELH 145 (287)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHhC
Confidence 445678889999999999999999999999999999999998888888888 567778999999999999998874
Q ss_pred hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCC
Q 013467 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~ 354 (442)
.+++++||+++|||+. ..++..++.....+.++.++++ +.++|+|++|+|++++.+++++..|+||++++
T Consensus 146 ----~~~~ilR~~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~ 215 (287)
T 3sc6_A 146 ----NKYFIVRTSWLYGKYG----NNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHTSLYGTYHVSNT 215 (287)
T ss_dssp ----SSEEEEEECSEECSSS----CCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHTSCCCEEEECCCB
T ss_pred ----CCcEEEeeeeecCCCC----CcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHhCCCCCeEEEcCC
Confidence 4789999999999864 4577888888888888887654 88999999999999999999988779999999
Q ss_pred CccCHHHHHHHHHHHhCCCCceEeCC-----CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHH
Q 013467 355 GEFTMLELAQVVQETIDPNAKIEFRP-----NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 355 ~~~s~~dl~~~l~~~~g~~~~~~~~~-----~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~ 421 (442)
+.+|+.|+++.+.+.+|.+..+...+ .....+....+|++|++ .|||.|.++++++|+++++|+++
T Consensus 216 ~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 216 GSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp SCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred CcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 99999999999999999887776442 23445567889999999 79999999999999999999864
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=324.82 Aligned_cols=301 Identities=24% Similarity=0.423 Sum_probs=236.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc--ccCCCceeEEeccccccc-----cC--CCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH--HFGNPNFELIRHDVVEPL-----LL--EVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 187 (442)
|+||||||+||||++++++|+++|++|++++|......+.... .....++.++.+|+.+.. +. ++|+|||+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 5899999999999999999999999999998754322221111 001235778889987642 22 59999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CChhHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRT 265 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK~~ 265 (442)
||.........++...+++|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+..+ .+.|+.+|++
T Consensus 81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~~Y~~sK~~ 155 (338)
T 1udb_A 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVES-----FPTGTPQSPYGKSKLM 155 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTT-----SCCCCCSSHHHHHHHH
T ss_pred CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcc-----cCCCCCCChHHHHHHH
Confidence 986543223345677899999999999999999887 9999999999987766677777 33333 5789999999
Q ss_pred HHHHHHHHHhhc-CCcEEEEeeCceeCCCCc------cC--CCchHHHHHHHHH-cCCCcEEec------CCceeEeccC
Q 013467 266 AETLTMDYHRGA-GVEVRIARIFNTYGPRMC------ID--DGRVVSNFVAQAL-RKEPLTVYG------DGKQTRSFQF 329 (442)
Q Consensus 266 ~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~------~~--~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~v~ 329 (442)
+|.+++.++++. +++++++||+++||+... .. ...++..+..... .+..+.+++ ++.+.++|+|
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 235 (338)
T 1udb_A 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEE
Confidence 999999998776 899999999999998421 11 2345666555544 344555554 5678899999
Q ss_pred HHHHHHHHHHHHcCC--CC--ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcc
Q 013467 330 VSDLVEGLMRLMEGE--HV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPK 405 (442)
Q Consensus 330 v~Dva~ai~~~l~~~--~~--g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~ 405 (442)
++|+|++++.+++.+ .. ++||+++++.+|+.|+++.+.+.+|.+..+...+....+.....+|++|++++|||+|+
T Consensus 236 v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 315 (338)
T 1udb_A 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCcC
Confidence 999999999998753 23 48999999999999999999999998877766655555556678999999999999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 013467 406 VSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 406 ~~l~e~l~~~~~~~~~~ 422 (442)
++++++|+++++||+++
T Consensus 316 ~~l~~~l~~~~~w~~~~ 332 (338)
T 1udb_A 316 RTLDEMAQDTWHWQSRH 332 (338)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999865
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=328.79 Aligned_cols=308 Identities=22% Similarity=0.259 Sum_probs=241.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-------CCCceeEEecccccc-----ccC--CCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-------GNPNFELIRHDVVEP-----LLL--EVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-------~~~~v~~~~~D~~~~-----~~~--~~d 182 (442)
|+||||||+||||++++++|+++|++|++++|............+ ...++.++.+|+.+. .+. ++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999997543211111111 124678899998764 233 479
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC----eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~----r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
+|||+||.........++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+.+.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~~~~~ 179 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSP 179 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCSH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-----CCCCCCCh
Confidence 99999996543222356778899999999999999999874 8999999999987766778887 45566789
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCC-CcEEecCCceeEeccCHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
|+.+|+.+|.+++.++++.+++++++||+++|||+..... ...+..++..+..+. ....++++++.++|+|++|+|++
T Consensus 180 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a 259 (375)
T 1t2a_A 180 YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEA 259 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHH
Confidence 9999999999999998888999999999999999742111 122344555556665 34557888899999999999999
Q ss_pred HHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceE-------------------eCC--CCCCCCCccccChHH
Q 013467 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIE-------------------FRP--NTEDDPHKRKPDISR 395 (442)
Q Consensus 337 i~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~-------------------~~~--~~~~~~~~~~~d~~k 395 (442)
++.+++++..++||+++++.+|+.|+++.+.+.+|.+..+. +.+ ..........+|++|
T Consensus 260 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 339 (375)
T 1t2a_A 260 MWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTK 339 (375)
T ss_dssp HHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHH
T ss_pred HHHHHhcCCCceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccchhhcCCHHH
Confidence 99999987778999999999999999999999999875432 111 112233456789999
Q ss_pred HHHhhCCCcccCHHHHHHHHHHHHHHHhhccccc
Q 013467 396 AKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKE 429 (442)
Q Consensus 396 ~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~~~~~ 429 (442)
++++|||+|+++++++|+++++||++.......+
T Consensus 340 ~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~~ 373 (375)
T 1t2a_A 340 AKQKLNWKPRVAFDELVREMVHADVELMRTNPNA 373 (375)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhcCCCccCCHHHHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999887655443
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=326.67 Aligned_cols=317 Identities=24% Similarity=0.313 Sum_probs=239.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-ccccccc-----CCCceeEEecccccc-----ccC--CCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHF-----GNPNFELIRHDVVEP-----LLL--EVD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~-----~~~~v~~~~~D~~~~-----~~~--~~d 182 (442)
||+|+||||+||||++++++|+++|++|++++|...... +.+.... ...++.++.+|+.+. .+. ++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999998643211 1111110 124678888998764 233 479
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC----eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~----r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
+|||+||.........++...+++|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+..+.+.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-----~~~~~~~~ 155 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP 155 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-----CCCCCCCh
Confidence 99999997654444456778899999999999999999874 8999999999987766678887 45566789
Q ss_pred hHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a 336 (442)
|+.+|+.+|.+++.++++.+++++++|++++|||+..... ...+..++..+..+.. ...++++++.++|+|++|+|++
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a 235 (372)
T 1db3_A 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHH
Confidence 9999999999999998888999999999999999752111 1234555556666653 4557888899999999999999
Q ss_pred HHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEe-----------------------------CC--CCCCC
Q 013467 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEF-----------------------------RP--NTEDD 385 (442)
Q Consensus 337 i~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~-----------------------------~~--~~~~~ 385 (442)
++.+++++..++||+++++.+|+.|+++.+.+.+|.+..+.. .+ .....
T Consensus 236 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1db3_A 236 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAE 315 (372)
T ss_dssp HHHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC
T ss_pred HHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccccccCCCc
Confidence 999998877789999999999999999999999987543221 11 11222
Q ss_pred CCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhhccccccCCCCCCC
Q 013467 386 PHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEGGAGATPD 437 (442)
Q Consensus 386 ~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (442)
.....+|++|++++|||+|+++++++|+++++||++....+..-..++..++
T Consensus 316 ~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (372)
T 1db3_A 316 VETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVA 367 (372)
T ss_dssp -CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred hhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccchhhhcCcceE
Confidence 3356789999999999999989999999999999988766544334444443
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=325.08 Aligned_cols=298 Identities=21% Similarity=0.311 Sum_probs=234.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccC-----CCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL-----EVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-----~~d~Vih~A 188 (442)
++|+|||||||||||++|+++|+++| ++|++++|.............. ...++.+.+..+..+. ++|+|||+|
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A 123 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEG 123 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCce-EeeecCcHHHHHHHHhhcccCCCCEEEECC
Confidence 45789999999999999999999999 9999999864332111101111 1223322222333444 599999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
+.... ...++...+++|+.++.+++++|++.+++|||+||..+|+.....+++|+ .+..+.+.|+.+|+.+|.
T Consensus 124 ~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~ 196 (357)
T 2x6t_A 124 ACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVFGYSKFLFDE 196 (357)
T ss_dssp SCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSG-----GGCCCSSHHHHHHHHHHH
T ss_pred cccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCc-----CCCCCCChhHHHHHHHHH
Confidence 97543 44567889999999999999999998889999999999987766678887 456667899999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHcCCCcEEecCCce-eEeccCHHHHHHHHHHHHcCCC
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
+++.++++.|++++++||+++|||+.... ...++..++..+..+..+.+++++.+ .++|+|++|+|++++.+++++.
T Consensus 197 ~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~ 276 (357)
T 2x6t_A 197 YVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 276 (357)
T ss_dssp HHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC
Confidence 99999888899999999999999975321 13567788888888888888888888 9999999999999999998776
Q ss_pred CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC----CCCCccccChHHHHHhhCC-CcccCHHHHHHHHHHHHH
Q 013467 346 VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----DDPHKRKPDISRAKELLGW-EPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 346 ~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~LG~-~p~~~l~e~l~~~~~~~~ 420 (442)
.++||+++++.+++.|+++.+.+.+|.+ .+.+.+.+. ........|++++++ ||| .|.++++++|+++++||+
T Consensus 277 ~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~~ 354 (357)
T 2x6t_A 277 SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLN 354 (357)
T ss_dssp CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHHC
T ss_pred CCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHHh
Confidence 5599999999999999999999999987 444433222 123346789999987 999 788899999999999997
Q ss_pred HH
Q 013467 421 QR 422 (442)
Q Consensus 421 ~~ 422 (442)
++
T Consensus 355 ~~ 356 (357)
T 2x6t_A 355 RD 356 (357)
T ss_dssp --
T ss_pred hc
Confidence 64
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=320.76 Aligned_cols=295 Identities=21% Similarity=0.311 Sum_probs=214.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccC-----CCCEEEEecccC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL-----EVDQIYHLACPA 191 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-----~~d~Vih~A~~~ 191 (442)
+|+|||||||||++++++|+++| ++|++++|.............. ...++.+.+..+..+. ++|+|||+|+..
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 79 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcCcce-eccccccHHHHHHHHhccccCCCcEEEECcccc
Confidence 48999999999999999999999 9999999864332111111111 1223333333334454 499999999975
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (442)
.. +..++...+++|+.++.+++++|++.+++|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.+++
T Consensus 80 ~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~e~~~~ 152 (310)
T 1eq2_A 80 ST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (310)
T ss_dssp CT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred cC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHHHH
Confidence 43 44568889999999999999999998889999999999998766677887 456667899999999999999
Q ss_pred HHHhhcCCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHcCCCcEEecCCce-eEeccCHHHHHHHHHHHHcCCCCcc
Q 013467 272 DYHRGAGVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 272 ~~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~ai~~~l~~~~~g~ 348 (442)
.++++.|++++++||+++|||+.... ...++..++..+..+.++.+++++.+ .++|+|++|+|++++.+++++..++
T Consensus 153 ~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~~~~ 232 (310)
T 1eq2_A 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232 (310)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCCCCe
Confidence 99888899999999999999975321 13577888888888888877788888 8999999999999999998776559
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC----CCCCccccChHHHHHhhCC-CcccCHHHHHHHHHHHHHHH
Q 013467 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----DDPHKRKPDISRAKELLGW-EPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~LG~-~p~~~l~e~l~~~~~~~~~~ 422 (442)
||+++++.+|+.|+++.+.+.+|.+ .+.+.+.+. ........|++++++ ||| .|.++++++|+++++||+++
T Consensus 233 ~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 233 FNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp EEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred EEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999987 333332221 123346789999987 999 78889999999999999764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=320.25 Aligned_cols=306 Identities=20% Similarity=0.255 Sum_probs=240.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc-ccccccCCCceeEEecccccc-----ccC--CCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE-NVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih 186 (442)
++|+||||||+||||++++++|+++|++|++++|....... .+.......++.++.+|+.+. .+. ++|+|||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 81 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN 81 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 35799999999999999999999999999999997543221 111111224688888998764 233 4699999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC--CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
+||.........++...+++|+.++.+++++|++.+ .+||++||.++||.....+++|+ .+..+.+.|+.+|+
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y~~sK~ 156 (345)
T 2z1m_A 82 LAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKL 156 (345)
T ss_dssp CCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChhHHHHH
Confidence 999754332345678899999999999999999887 38999999999998777777777 45666789999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
.+|.+++.++++.+++++++|+.++|||+..... ...+..++..+..+.. ...++++.+.++|+|++|+|++++.+++
T Consensus 157 ~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~ 236 (345)
T 2z1m_A 157 FGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQ 236 (345)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHh
Confidence 9999999998888999999999999999853211 1123334445555643 3356778888999999999999999999
Q ss_pred CCCCccEEecCCCccCHHHHHHHHHHHhCCCCceE-------------------eCC--CCCCCCCccccChHHHHHhhC
Q 013467 343 GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIE-------------------FRP--NTEDDPHKRKPDISRAKELLG 401 (442)
Q Consensus 343 ~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~-------------------~~~--~~~~~~~~~~~d~~k~~~~LG 401 (442)
++..++||+++++.+++.|+++.+.+.+|.+..+. +.+ ..........+|++|++++||
T Consensus 237 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 316 (345)
T 2z1m_A 237 QPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLG 316 (345)
T ss_dssp SSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHC
T ss_pred CCCCceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecCHHHHHHHcC
Confidence 87778999999999999999999999999875432 111 112233456779999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHhhc
Q 013467 402 WEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 402 ~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
|+|+++++++|+++++||+++...
T Consensus 317 ~~p~~~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 317 WKPRTTFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCHHHHHHHHHHHHHHHhcc
Confidence 999889999999999999987654
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=319.21 Aligned_cols=290 Identities=19% Similarity=0.282 Sum_probs=229.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih 186 (442)
+|+|+|||||||||++++++|+++ |++|++++|..... ... .++.++.+|+.+. .+. ++|+|||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vih 74 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT--DVV-----NSGPFEVVNALDFNQIEHLVEVHKITDIYL 74 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC--HHH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc--ccc-----CCCceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence 468999999999999999999999 89999999864432 111 2467888888764 344 7999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC-CCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ-HPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~-~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
+|+.... ....++...+++|+.++.+++++|++.++ +|||+||.++|+.... .+.+|+ .+..+.+.|+.+|+
T Consensus 75 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 148 (312)
T 2yy7_A 75 MAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVYGISKQ 148 (312)
T ss_dssp CCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHHHHHHH
T ss_pred CCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchhHHHHH
Confidence 9986432 22356778899999999999999999997 9999999999986433 456666 45667789999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCC--chHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
.+|.+++.++++.|++++++||+++||++..+... ..+..++...+.++.+..++++++.++|+|++|+|++++.+++
T Consensus 149 ~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 228 (312)
T 2yy7_A 149 AGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMK 228 (312)
T ss_dssp HHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHh
Confidence 99999999988889999999999999976432221 2233333444555667777888899999999999999999998
Q ss_pred CCCC-----ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC---CCCCccccChHHHHHhhCCCcccCHHHHHHH
Q 013467 343 GEHV-----GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE---DDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414 (442)
Q Consensus 343 ~~~~-----g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~ 414 (442)
++.. ++||+++ +.+|+.|+++.+.+.+| ...+.+.+... .......+|++|++++|||+|+++++++|++
T Consensus 229 ~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~ 306 (312)
T 2yy7_A 229 APVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIP-EFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTKD 306 (312)
T ss_dssp SCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCT-TCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHHHHHHH
T ss_pred CcccccccCceEEeCC-CccCHHHHHHHHHHHCC-CCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHHHHHHH
Confidence 7642 5999986 89999999999999998 34455544211 1122357899999999999999999999999
Q ss_pred HHHHHH
Q 013467 415 MVKDFR 420 (442)
Q Consensus 415 ~~~~~~ 420 (442)
+++||+
T Consensus 307 ~~~~~k 312 (312)
T 2yy7_A 307 MIEHLS 312 (312)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999984
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=326.81 Aligned_cols=307 Identities=25% Similarity=0.284 Sum_probs=239.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc----------------cccc--ccCCCceeEEecccccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE----------------NVMH--HFGNPNFELIRHDVVEP 176 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~----------------~~~~--~~~~~~v~~~~~D~~~~ 176 (442)
.+++|||||||||||++++++|+++|++|++++|....... .... .....++.++.+|+.+.
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~ 89 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 89 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCH
Confidence 46799999999999999999999999999999885321100 0000 01124678899998764
Q ss_pred -----ccCC--CCEEEEecccCCCCcccCCh---hHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCC
Q 013467 177 -----LLLE--VDQIYHLACPASPVHYKFNP---VKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKE 244 (442)
Q Consensus 177 -----~~~~--~d~Vih~A~~~~~~~~~~~~---~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E 244 (442)
++.+ +|+|||+||.........++ ...+++|+.|+.+++++|++.++ +||++||.++||... .+++|
T Consensus 90 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~E 168 (404)
T 1i24_A 90 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEE 168 (404)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCS
T ss_pred HHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCCc
Confidence 2444 99999999965432222333 34789999999999999999883 899999999998654 45666
Q ss_pred CCCCCC---------CCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC-------------C--Cc
Q 013467 245 TYWGNV---------NPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-------------D--GR 300 (442)
Q Consensus 245 ~~~~~~---------~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~-------------~--~~ 300 (442)
+.|... .+..+.+.|+.+|+++|.+++.++++.|++++++||++||||+.... . ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~ 248 (404)
T 1i24_A 169 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248 (404)
T ss_dssp SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCC
T ss_pred cccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchhh
Confidence 543210 24556689999999999999999888899999999999999975321 0 35
Q ss_pred hHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-Cc---cEEecCCCccCHHHHHHHHHHH---hCCC
Q 013467 301 VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG---PFNLGNPGEFTMLELAQVVQET---IDPN 373 (442)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g---~~~i~~~~~~s~~dl~~~l~~~---~g~~ 373 (442)
++..++..+..+.++.+++++.+.++|+|++|+|++++.+++++. .| +||+++ +.+++.|+++.+.+. +|.+
T Consensus 249 ~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~e~~~~i~~~~~~~g~~ 327 (404)
T 1i24_A 249 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVNELASLVTKAGSKLGLD 327 (404)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHHHHHHHHHHHHHhhCCC
Confidence 788888888999888888999999999999999999999998765 34 899998 889999999999998 7877
Q ss_pred CceEeCCCCCC--CCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhh
Q 013467 374 AKIEFRPNTED--DPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 374 ~~~~~~~~~~~--~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
..+...+.... ......+|++|++ +|||+|+++++++++++++|++....
T Consensus 328 ~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~ 379 (404)
T 1i24_A 328 VKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKD 379 (404)
T ss_dssp CCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred ccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhh
Confidence 76655443322 2334678999998 59999999999999999999976543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=316.09 Aligned_cols=286 Identities=15% Similarity=0.124 Sum_probs=224.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
.+|+|+|||||||||++++++|+++|++|++++|...... .+ ...+++++.+|+.+. .+.++|+|||+|+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~l----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQ-RL----AYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGG-GG----GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhh-hh----ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 3469999999999999999999999999999999654321 11 123678888998764 5678999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC--CCCCCCCCCCCCCCCC----CChhHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ--HPQKETYWGNVNPIGV----RSCYDEG 262 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~--~~~~E~~~~~~~~~~~----~~~Y~~s 262 (442)
... .+..++...+++|+.++.+++++|++.++ +|||+||.++|+.... .+ +|+ .+..+ .+.|+.+
T Consensus 87 ~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-----~~~~p~~~~~~~Y~~s 158 (342)
T 2x4g_A 87 YYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-----LFYDSLPSGKSSYVLC 158 (342)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-----CCCSSCCTTSCHHHHH
T ss_pred cCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-----CCCCccccccChHHHH
Confidence 643 23456778899999999999999999997 9999999999986544 34 666 44455 6899999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
|+.+|.+++.+++. |++++++||+++||++.. ... +..++..+..+....+ ++..++|+|++|+|++++.+++
T Consensus 159 K~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~--~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 159 KWALDEQAREQARN-GLPVVIGIPGMVLGELDI--GPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEECEEECSCCS--SCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-CCcEEEEeCCceECCCCc--ccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHh
Confidence 99999999998877 999999999999999751 112 4556666677766654 4578899999999999999998
Q ss_pred CCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC------------------------C---CCCCccccChH
Q 013467 343 GEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT------------------------E---DDPHKRKPDIS 394 (442)
Q Consensus 343 ~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~------------------------~---~~~~~~~~d~~ 394 (442)
++..| +||+++++ +|+.|+++.+.+.+|.+..+ ..+.. . .......+|++
T Consensus 232 ~~~~g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 309 (342)
T 2x4g_A 232 RGRIGERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGR 309 (342)
T ss_dssp HSCTTCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------------CCTTCCCCBCCH
T ss_pred CCCCCceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChH
Confidence 76644 99999998 99999999999999987765 32221 0 01245678999
Q ss_pred HHHHhhCC-CcccCHHHHHHHHHHHHHHHh
Q 013467 395 RAKELLGW-EPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 395 k~~~~LG~-~p~~~l~e~l~~~~~~~~~~~ 423 (442)
|++++||| +| ++++++|+++++||+++.
T Consensus 310 k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 310 KAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp HHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 99999999 99 799999999999998764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=320.76 Aligned_cols=304 Identities=23% Similarity=0.295 Sum_probs=238.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-cccccccC-----CC-ceeEEecccccc-----ccC--CCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHFG-----NP-NFELIRHDVVEP-----LLL--EVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~~-----~~-~v~~~~~D~~~~-----~~~--~~d 182 (442)
|+||||||+||||++++++|+++|++|++++|...... ..+..... .. ++.++.+|+.+. ++. ++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999754311 11111100 12 678899998764 233 479
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC------eEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA------RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~------r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
+|||+||.........++...+++|+.++.+++++|++.++ +|||+||.++||.... +++|+ .+..+.
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-----~~~~~~ 182 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFHPR 182 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-----SCCCCC
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-----CCCCCC
Confidence 99999996543322356778899999999999999987652 9999999999997665 77887 456667
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcCCC-cEEecCCceeEeccCHHHHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva 334 (442)
+.|+.+|+.+|.+++.++.+.+++++++|++++|||+..... ...+..++..+..+.. ...++++++.++|+|++|+|
T Consensus 183 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva 262 (381)
T 1n7h_A 183 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 262 (381)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHH
Confidence 899999999999999998888999999999999999752111 1223445555556643 44568888999999999999
Q ss_pred HHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCc--eEeCCC--CCCCCCccccChHHHHHhhCCCcccCHHH
Q 013467 335 EGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK--IEFRPN--TEDDPHKRKPDISRAKELLGWEPKVSLRK 410 (442)
Q Consensus 335 ~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~--~~~~~~--~~~~~~~~~~d~~k~~~~LG~~p~~~l~e 410 (442)
++++.+++++..++||+++++.+++.|+++.+.+.+|.+.. +.+.+. .+.......+|++|++++|||+|++++++
T Consensus 263 ~a~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e 342 (381)
T 1n7h_A 263 EAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEK 342 (381)
T ss_dssp HHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHHhCCCCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCcccCCHHH
Confidence 99999999877789999999999999999999999997642 333221 22333456789999999999999889999
Q ss_pred HHHHHHHHHHHHhhcc
Q 013467 411 GLPKMVKDFRQRIFGD 426 (442)
Q Consensus 411 ~l~~~~~~~~~~~~~~ 426 (442)
+|+++++||++.....
T Consensus 343 ~l~~~~~~~~~~~~~~ 358 (381)
T 1n7h_A 343 LVKMMVDEDLELAKRE 358 (381)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999999876543
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=312.35 Aligned_cols=274 Identities=17% Similarity=0.211 Sum_probs=224.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASP 193 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~ 193 (442)
.++|||||||||||++++++|+++|++|++++|.. .++.+.+.....+. ++|+|||+||....
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~ 76 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHTAV 76 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc---------------CCCCCHHHHHHHHHhcCCCEEEECCccCCH
Confidence 35899999999999999999999999999998841 12222222333444 79999999996543
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (442)
.....++...+++|+.++.+++++|++.+++|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.+++.+
T Consensus 77 ~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~E~~~~~~ 151 (292)
T 1vl0_A 77 DKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGENFVKAL 151 (292)
T ss_dssp HHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCC-----CCCCCccHHHHHHHHHHHHHHhh
Confidence 2234567889999999999999999998889999999999988766788888 45666789999999999999886
Q ss_pred HhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecC
Q 013467 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGN 353 (442)
Q Consensus 274 ~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~ 353 (442)
. .+++++||+++||++ ..++..++.....+..+...+ ++.++|+|++|+|++++.+++++..++||+++
T Consensus 152 ~----~~~~~lR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~ 220 (292)
T 1vl0_A 152 N----PKYYIVRTAWLYGDG-----NNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEKNYGTFHCTC 220 (292)
T ss_dssp C----SSEEEEEECSEESSS-----SCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred C----CCeEEEeeeeeeCCC-----cChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcCCCcEEEecC
Confidence 4 479999999999982 356777777777777776655 47889999999999999999877455999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCceEeCCCC-----CCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHH
Q 013467 354 PGEFTMLELAQVVQETIDPNAKIEFRPNT-----EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 354 ~~~~s~~dl~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~ 421 (442)
++.+|+.|+++.+.+.+|.+..+...+.. ...+....+|++|++++|||+|+ +++++|+++++||++
T Consensus 221 ~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 221 KGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQM 292 (292)
T ss_dssp BSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHTC
T ss_pred CCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhcC
Confidence 99999999999999999988765543321 22345678999999999999999 999999999999863
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=314.02 Aligned_cols=288 Identities=24% Similarity=0.387 Sum_probs=230.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEE
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQI 184 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~V 184 (442)
...++|+||||||+||||++++++|+++|++|++++|......+.. ..+ .++.++.+|+.+. .+. ++|+|
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D~v 92 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL-PPV--AGLSVIEGSVTDAGLLERAFDSFKPTHV 92 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS-CSC--TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh-hcc--CCceEEEeeCCCHHHHHHHHhhcCCCEE
Confidence 4456789999999999999999999999999999999644332111 111 4788899998764 345 89999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCC--CCCCCCCCCCCCCCCCChhHH
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQH--PQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~--~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
||+||..... ...++. +++|+.++.+++++|.+.++ +||++||.++|+..... +++|++ .+.+.|+.
T Consensus 93 ih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~-------~~~~~Y~~ 162 (330)
T 2pzm_A 93 VHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT-------APFTSYGI 162 (330)
T ss_dssp EECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC-------CCCSHHHH
T ss_pred EECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC-------CCCChHHH
Confidence 9999975432 122233 88999999999999999887 99999999999865443 677762 45588999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH-HHHHH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLMRL 340 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~-ai~~~ 340 (442)
+|+++|.+++.+ +++++++||+++|||+. ...++..++..+..+. ..++++. .++|+|++|+|+ +++.+
T Consensus 163 sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~ 232 (330)
T 2pzm_A 163 SKTAGEAFLMMS----DVPVVSLRLANVTGPRL---AIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSL 232 (330)
T ss_dssp HHHHHHHHHHTC----SSCEEEEEECEEECTTC---CSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc----CCCEEEEeeeeeECcCC---CCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHH
Confidence 999999998775 79999999999999984 3456677777766665 4455666 889999999999 99999
Q ss_pred HcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHH-----HHhhCCCcccCHHHHHHHH
Q 013467 341 MEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRA-----KELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 341 l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~-----~~~LG~~p~~~l~e~l~~~ 415 (442)
++++..++||++++..+++.|+++.+.+.+|.+ .+.+.+... ......+|++|+ ++ |||+|+++++++|+++
T Consensus 233 ~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~ 309 (330)
T 2pzm_A 233 QEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQ 309 (330)
T ss_dssp STTCCCEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHH
T ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHH
Confidence 987664499999999999999999999999987 544443333 445677888888 77 9999988999999999
Q ss_pred HHHHHHHhhc
Q 013467 416 VKDFRQRIFG 425 (442)
Q Consensus 416 ~~~~~~~~~~ 425 (442)
++||++....
T Consensus 310 ~~~~~~~~~~ 319 (330)
T 2pzm_A 310 LAWYDKYGVT 319 (330)
T ss_dssp HHHHHHHCSC
T ss_pred HHHHHhhCcc
Confidence 9999877543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=312.80 Aligned_cols=285 Identities=24% Similarity=0.329 Sum_probs=225.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCC--CCEE
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLE--VDQI 184 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~V 184 (442)
...+||+|||||||||||++++++|+++|++|++++|......+.+.. ..++.++.+|+.+. ++.+ +|+|
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~D~v 93 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQPDAV 93 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence 445678999999999999999999999999999999965433222211 14788899998774 3445 9999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCcccc----CCCCCCCCCCCCCCCCCCCCC-Ch
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG----DPLQHPQKETYWGNVNPIGVR-SC 258 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~----~~~~~~~~E~~~~~~~~~~~~-~~ 258 (442)
||+||..... ...++. +++|+.++.+++++|.+.++ +||++||.++|+ .... +++|++ .+. +.
T Consensus 94 ih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~-------~p~~~~ 162 (333)
T 2q1w_A 94 VHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR-------NPANSS 162 (333)
T ss_dssp EECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC-------CCTTCH
T ss_pred EECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC-------CCCCCc
Confidence 9999975432 112233 88999999999999999997 999999999998 4444 677762 445 78
Q ss_pred hHHHHHHHHHHHHH-HHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 259 YDEGKRTAETLTMD-YHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 259 Y~~sK~~~E~~v~~-~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
|+.+|+++|.+++. +. +++++||+++|||+. ...++..++..+..+. .+++ +...+++++++|+|+++
T Consensus 163 Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai 231 (333)
T 2q1w_A 163 YAISKSANEDYLEYSGL-----DFVTFRLANVVGPRN---VSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARAT 231 (333)
T ss_dssp HHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC---CSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC---cCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHH
Confidence 99999999999987 53 799999999999982 2456777777777765 3345 56789999999999999
Q ss_pred HHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC----CCCCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 338 MRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----DDPHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 338 ~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
+.+++++..++||++++..+++.|+++.+.+.+|.+ .+.+.+... .......+|++|++++ ||+|.++++++|+
T Consensus 232 ~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~ 309 (333)
T 2q1w_A 232 VRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEFTPLKETVA 309 (333)
T ss_dssp HHHHTTCCCEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHH
T ss_pred HHHHhcCCCCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc-CCCcCCCHHHHHH
Confidence 999988774499999999999999999999999987 443332211 1125678899999997 9999989999999
Q ss_pred HHHHHHHHHh
Q 013467 414 KMVKDFRQRI 423 (442)
Q Consensus 414 ~~~~~~~~~~ 423 (442)
++++||++..
T Consensus 310 ~~~~~~~~~~ 319 (333)
T 2q1w_A 310 AAVAYFREYG 319 (333)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHC
Confidence 9999998775
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=314.86 Aligned_cols=273 Identities=17% Similarity=0.165 Sum_probs=224.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCC--CCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLE--VDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~--~d~Vih~A~ 189 (442)
|+|+|||||||||++++++|+ +|++|++++|... ++.+|+.+ ..+.+ +|+|||+|+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~----------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK----------------EFCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS----------------SSCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc----------------cccccCCCHHHHHHHHHhcCCCEEEECcc
Confidence 589999999999999999999 8999999998531 22344433 34444 999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
.........++...+++|+.++.+++++|++.+++|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 138 (299)
T 1n2s_A 64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEKA 138 (299)
T ss_dssp CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCC-----CCCCCccHHHHHHHHHHHH
Confidence 75433345678889999999999999999998889999999999998777788888 5666778999999999999
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC--C--
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE--H-- 345 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~--~-- 345 (442)
++.+. .+++++||+++||++. ..++..++..+..+.++..+++ +.++|+|++|+|++++.+++++ .
T Consensus 139 ~~~~~----~~~~ilRp~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~~~~ 208 (299)
T 1n2s_A 139 LQDNC----PKHLIFRTSWVYAGKG----NNFAKTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVALNKPE 208 (299)
T ss_dssp HHHHC----SSEEEEEECSEECSSS----CCHHHHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHhC----CCeEEEeeeeecCCCc----CcHHHHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhccccc
Confidence 98864 4899999999999974 2577778888888877776654 7899999999999999999876 2
Q ss_pred -CccEEecCCCccCHHHHHHHHHHHhCCC------CceEeCCC-----CCCCCCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 346 -VGPFNLGNPGEFTMLELAQVVQETIDPN------AKIEFRPN-----TEDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 346 -~g~~~i~~~~~~s~~dl~~~l~~~~g~~------~~~~~~~~-----~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
.++||+++++.+|+.|+++.+.+.+|.+ ..+...+. ....+....+|++|++++|||+|+ +++++|+
T Consensus 209 ~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~ 287 (299)
T 1n2s_A 209 VAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGVK 287 (299)
T ss_dssp GCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHHH
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC-CHHHHHH
Confidence 4699999999999999999999999865 23333221 122345678999999999999998 9999999
Q ss_pred HHHHHHHHH
Q 013467 414 KMVKDFRQR 422 (442)
Q Consensus 414 ~~~~~~~~~ 422 (442)
++++||++.
T Consensus 288 ~~~~~~~~~ 296 (299)
T 1n2s_A 288 RMLTEMFTT 296 (299)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhc
Confidence 999999753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=311.56 Aligned_cols=267 Identities=16% Similarity=0.170 Sum_probs=217.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCC-CCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLE-VDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~-~d~Vih~A 188 (442)
++|+||||| +||||++|+++|+++|++|++++|..... ..++.++.+|+.+. .+.+ +|+|||+|
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 467999999 59999999999999999999999964431 24678888888664 3445 99999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
+.. ..++...+++|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|+.+|
T Consensus 72 ~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E 141 (286)
T 3gpi_A 72 AAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFSGKRMLEAE 141 (286)
T ss_dssp HHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHHHHHHHHHH
T ss_pred CCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChhhHHHHHHH
Confidence 852 234567778999999999999999887 9999999999998877788888 56777899999999999
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE--- 344 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~--- 344 (442)
.+ +++ ++++++||+++|||+. . .++..+.. .. .+++++..++|+|++|+|++++.+++++
T Consensus 142 ~~-~~~-----~~~~ilR~~~v~G~~~----~----~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~ 204 (286)
T 3gpi_A 142 AL-LAA-----YSSTILRFSGIYGPGR----L----RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRSHA 204 (286)
T ss_dssp HH-GGG-----SSEEEEEECEEEBTTB----C----HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHTTS
T ss_pred HH-Hhc-----CCeEEEecccccCCCc----h----hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhccC
Confidence 98 553 8999999999999974 1 33444444 22 2367788999999999999999999873
Q ss_pred C-CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCccc-CHHHHHHHHHHHHHHH
Q 013467 345 H-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV-SLRKGLPKMVKDFRQR 422 (442)
Q Consensus 345 ~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~~~~~~~~ 422 (442)
. .++||+++++.+|+.|+++.+.+.+|.+..+...+ .......+|++|++ .|||+|++ +|+++|+++++|+...
T Consensus 205 ~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~ 280 (286)
T 3gpi_A 205 VPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSNARLL-ASGYQLIYPDYVSGYGALLAAMREG 280 (286)
T ss_dssp CCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC-
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhcc
Confidence 3 35999999999999999999999999887665443 44567789999998 79999999 6999999999998654
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=308.06 Aligned_cols=292 Identities=23% Similarity=0.305 Sum_probs=229.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEec
Q 013467 118 RIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLA 188 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A 188 (442)
+||||||+||||++++++|+++ |++|++++|...... ++.++.+|+.+. .+. ++|+|||+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a 70 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLA 70 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence 4899999999999999999998 899999998543211 456788888764 334 799999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCC-CCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL-QHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
+.... ....++...+++|+.++.+++++|++.++ +||++||.++|+... ..+.+|+ .+..+.+.|+.+|+.+
T Consensus 71 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y~~sK~~~ 144 (317)
T 3ajr_A 71 GILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMFGVTKIAA 144 (317)
T ss_dssp CCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHHHHHHHHH
T ss_pred cccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchHHHHHHHH
Confidence 86432 12346778899999999999999999997 999999999998643 3345555 4566778999999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
|.+++.++++.|++++++||+++||+...+.. ..++..++...+.++.+..++++++.++|+|++|+|++++.+++++
T Consensus 145 e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 224 (317)
T 3ajr_A 145 ELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEAD 224 (317)
T ss_dssp HHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCC
Confidence 99999998888999999999999997643221 1223333445556667777778888999999999999999999876
Q ss_pred C----C-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC---CCCCccccChHHHHHhhCCCcccCHHHHHHHHH
Q 013467 345 H----V-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE---DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMV 416 (442)
Q Consensus 345 ~----~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~ 416 (442)
. . ++||+++ +.+++.|+++.+.+.+| ...+.+.+... .......+|++|++++|||+|+++++++|++++
T Consensus 225 ~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~ 302 (317)
T 3ajr_A 225 RDKLVLRNGYNVTA-YTFTPSELYSKIKERIP-EFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRTIDDMI 302 (317)
T ss_dssp GGGCSSCSCEECCS-EEECHHHHHHHHHTTCC-SCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_pred ccccccCceEecCC-ccccHHHHHHHHHHHCC-ccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4 2 5999986 68999999999999997 34455543210 112235689999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 013467 417 KDFRQRIFGDH 427 (442)
Q Consensus 417 ~~~~~~~~~~~ 427 (442)
+||+++...+.
T Consensus 303 ~~~~~~~~~~g 313 (317)
T 3ajr_A 303 DHISEKLGIEG 313 (317)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHhhhcccc
Confidence 99998765443
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=335.88 Aligned_cols=306 Identities=25% Similarity=0.445 Sum_probs=245.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih 186 (442)
.++|+|+|||||||||++++++|+++ |++|++++|....... .....++.++.+|+.+. .+.++|+|||
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih 388 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 388 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG----GTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh----hccCCceEEEECCCCCcHHHHHHhhcCCCEEEE
Confidence 35789999999999999999999998 8999999996533221 12335788999998763 2347999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCC-CCC-CCCCChhHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGN-VNP-IGVRSCYDEGKR 264 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~-~~~-~~~~~~Y~~sK~ 264 (442)
+||......+..++...+++|+.++.+++++|++.+.+|||+||.++|+.....+++|+++.. ..+ ..+.+.|+.+|+
T Consensus 389 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~ 468 (660)
T 1z7e_A 389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ 468 (660)
T ss_dssp CCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred CceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHHH
Confidence 999765444455678889999999999999999988899999999999987767788875321 111 134568999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCcc------CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHH
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~ 338 (442)
.+|.+++.++++.|++++++||+++||++... ....++..++..+..+.++.+++++++.++|+|++|+|++++
T Consensus 469 ~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~ 548 (660)
T 1z7e_A 469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 548 (660)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHH
Confidence 99999999988889999999999999997531 124567888888888988888888889999999999999999
Q ss_pred HHHcCCC---Cc-cEEecCCC-ccCHHHHHHHHHHHhCCCCceEeCCCC---------------CCCCCccccChHHHHH
Q 013467 339 RLMEGEH---VG-PFNLGNPG-EFTMLELAQVVQETIDPNAKIEFRPNT---------------EDDPHKRKPDISRAKE 398 (442)
Q Consensus 339 ~~l~~~~---~g-~~~i~~~~-~~s~~dl~~~l~~~~g~~~~~~~~~~~---------------~~~~~~~~~d~~k~~~ 398 (442)
.+++++. .| +||+++++ .+|+.|+++.+.+.+|.+......+.. ........+|++|+++
T Consensus 549 ~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 628 (660)
T 1z7e_A 549 RIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHR 628 (660)
T ss_dssp HHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCCBCCHHHHH
T ss_pred HHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhcccCHHHHHH
Confidence 9998764 34 99999986 899999999999998864321111111 1123456789999999
Q ss_pred hhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 399 LLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 399 ~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
+|||+|+++++++|+++++||+++.
T Consensus 629 ~LG~~p~~~l~egl~~~i~~~~~~~ 653 (660)
T 1z7e_A 629 CLDWEPKIDMQETIDETLDFFLRTV 653 (660)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHTTS
T ss_pred hcCCCccCcHHHHHHHHHHHHHhhc
Confidence 9999998899999999999998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=304.63 Aligned_cols=280 Identities=18% Similarity=0.237 Sum_probs=202.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A 188 (442)
+|+|+|||||||||++++++|+++|++|++++|.... .+ ++.+|+.+. ++. ++|+|||+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 4689999999999999999999999999999985322 01 444555443 344 489999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
|.........++...+++|+.++.+++++|++.+++|||+||..+|+. ...+++|+ .+..+.+.|+.+|+.+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~-----~~~~~~~~Y~~sK~~~e~ 142 (315)
T 2ydy_A 69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREE-----DIPAPLNLYGKTKLDGEK 142 (315)
T ss_dssp -------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCC-----CCCCCcCHHHHHHHHHHH
Confidence 975543334567788999999999999999998889999999999987 55677787 455667899999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHH-cCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE--- 344 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~--- 344 (442)
+++.+ +++++++||++|||+..... ..++..++.... .+..+... +++.++++|++|+|++++.+++++
T Consensus 143 ~~~~~----~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~~~~~~~ 215 (315)
T 2ydy_A 143 AVLEN----NLGAAVLRIPILYGEVEKLE-ESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLAEKRMLD 215 (315)
T ss_dssp HHHHH----CTTCEEEEECSEECSCSSGG-GSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHHHHHHTC
T ss_pred HHHHh----CCCeEEEeeeeeeCCCCccc-ccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHHHhhccc
Confidence 99876 47889999999999975321 134455666666 66666554 357889999999999999998753
Q ss_pred -C-CccEEecCCCccCHHHHHHHHHHHhCCCCc-eEeCCC----CCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHH
Q 013467 345 -H-VGPFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPN----TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417 (442)
Q Consensus 345 -~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~-~~~~~~----~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~ 417 (442)
. .++||+++++.+++.|+++.+.+.+|.+.. +...+. ....+....+|++|++++ ||+|.++++++|+++++
T Consensus 216 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~ 294 (315)
T 2ydy_A 216 PSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQRTPFRIGIKESLW 294 (315)
T ss_dssp TTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHG
T ss_pred cCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCCCCCHHHHHHHHHH
Confidence 3 459999999999999999999999998765 322221 123345678999999997 99999999999999999
Q ss_pred HHHHH
Q 013467 418 DFRQR 422 (442)
Q Consensus 418 ~~~~~ 422 (442)
||+++
T Consensus 295 ~~~~~ 299 (315)
T 2ydy_A 295 PFLID 299 (315)
T ss_dssp GGCC-
T ss_pred HHccc
Confidence 99765
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=298.36 Aligned_cols=266 Identities=18% Similarity=0.109 Sum_probs=215.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVH 195 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~ 195 (442)
+|+|+|||| ||||++++++|+++|++|++++|+..... . +...+++++.+|+.+..+.++|+|||+|+.....
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~----~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~- 77 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQME-A----IRASGAEPLLWPGEEPSLDGVTHLLISTAPDSGG- 77 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHH-H----HHHTTEEEEESSSSCCCCTTCCEEEECCCCBTTB-
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhh-h----HhhCCCeEEEecccccccCCCCEEEECCCccccc-
Confidence 579999998 99999999999999999999998643211 1 1224688899998775577899999999864321
Q ss_pred ccCChhHHHHHhHHHHHHHHHHHHH--cCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 013467 196 YKFNPVKTIKTNVVGTLNMLGLAKR--VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272 (442)
Q Consensus 196 ~~~~~~~~~~~nv~gt~~ll~~a~~--~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (442)
...+.+++++|++ .++ +|||+||.++|+.....+++|+ .+..+.+.|+.+|+.+|.++++
T Consensus 78 ------------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~~ 140 (286)
T 3ius_A 78 ------------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET-----TPLTPTAARGRWRVMAEQQWQA 140 (286)
T ss_dssp ------------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----SCCCCCSHHHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHHHHh
Confidence 1135789999998 666 9999999999998877788888 5677778999999999999988
Q ss_pred HHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCc-cEEe
Q 013467 273 YHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG-PFNL 351 (442)
Q Consensus 273 ~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g-~~~i 351 (442)
+ .+++++++||+++||++... +..+..+....+.++ .+.++|+|++|+|++++.+++++..| +||+
T Consensus 141 ~---~~~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~i 207 (286)
T 3ius_A 141 V---PNLPLHVFRLAGIYGPGRGP---------FSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPDPGAVYNV 207 (286)
T ss_dssp S---TTCCEEEEEECEEEBTTBSS---------STTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCCTTCEEEE
T ss_pred h---cCCCEEEEeccceECCCchH---------HHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCCCCCEEEE
Confidence 6 58999999999999997421 223455666666554 57899999999999999999988776 9999
Q ss_pred cCCCccCHHHHHHHHHHHhCCCCceEeCCCC--CC------CCCccccChHHHHHhhCCCccc-CHHHHHHHHHHH
Q 013467 352 GNPGEFTMLELAQVVQETIDPNAKIEFRPNT--ED------DPHKRKPDISRAKELLGWEPKV-SLRKGLPKMVKD 418 (442)
Q Consensus 352 ~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~--~~------~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~~~~ 418 (442)
++++.+|+.|+++.+.+.+|.+......... .. ......+|++|+++.|||+|++ +++++|+++++.
T Consensus 208 ~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 208 CDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp CCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred eCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 9999999999999999999987654332111 11 1245678999999999999999 799999999874
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=303.66 Aligned_cols=294 Identities=21% Similarity=0.215 Sum_probs=234.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-------CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc-CC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-------DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL-LE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-------~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~-~~ 180 (442)
.++|+||||||+||||++++++|+++| ++|++++|....... ....++.++.+|+.+. .+ .+
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~ 86 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEAR 86 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHTC
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhcC
Confidence 456799999999999999999999999 899999986432211 1234678889998765 34 47
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-----C-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-----A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-----~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+|+|||+||.... ....++...+++|+.++.+++++|++.+ + +||++||..+|+.....+++|+ .+..
T Consensus 87 ~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~ 160 (342)
T 2hrz_A 87 PDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-----FHTT 160 (342)
T ss_dssp CSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-----CCCC
T ss_pred CCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-----CCCC
Confidence 9999999986431 1234677889999999999999998876 5 9999999999987656678887 4566
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeC-CCCccC-CCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG-PRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
+.+.|+.+|+++|.++++++++.+++++++|++.+|| |+.... ...++..++...+.+.+..+++++....+++|++|
T Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D 240 (342)
T 2hrz_A 161 PLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRS 240 (342)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHH
Confidence 6789999999999999999888889999999999998 654211 13467777877888887766666667788999999
Q ss_pred HHHHHHHHHcCCC-----CccEEecCCCccCHHHHHHHHHHHhCCCC--ceEeCCCCC----CCCCccccChHHHHHhhC
Q 013467 333 LVEGLMRLMEGEH-----VGPFNLGNPGEFTMLELAQVVQETIDPNA--KIEFRPNTE----DDPHKRKPDISRAKELLG 401 (442)
Q Consensus 333 va~ai~~~l~~~~-----~g~~~i~~~~~~s~~dl~~~l~~~~g~~~--~~~~~~~~~----~~~~~~~~d~~k~~~~LG 401 (442)
+|++++.+++.+. .++||++ ++.+|+.|+++.+.+.+|.+. .+.+.+... .......+|++|+++ ||
T Consensus 241 va~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG 318 (342)
T 2hrz_A 241 AVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKRARE-LG 318 (342)
T ss_dssp HHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCHHHHH-TT
T ss_pred HHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChHHHHH-cC
Confidence 9999999998763 3599995 578999999999999998764 344433211 011223589999999 99
Q ss_pred CCcccCHHHHHHHHHHHHH
Q 013467 402 WEPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 402 ~~p~~~l~e~l~~~~~~~~ 420 (442)
|+|+++++++|+++++||+
T Consensus 319 ~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 319 FTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp CCCCSSHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHhc
Confidence 9999899999999999996
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=330.79 Aligned_cols=307 Identities=23% Similarity=0.382 Sum_probs=232.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc--cccCCCceeEEecccccc-----ccC--CCCEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM--HHFGNPNFELIRHDVVEP-----LLL--EVDQI 184 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~-----~~~--~~d~V 184 (442)
.++|+||||||+||||++++++|+++|++|++++|......+... ..+...++.++.+|+.+. ++. ++|+|
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V 88 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV 88 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence 456799999999999999999999999999999986543221111 111134678888998764 334 79999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCC----CCCCCCCCCCCCCCCCCCChh
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL----QHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~----~~~~~E~~~~~~~~~~~~~~Y 259 (442)
||+||..........+...+++|+.++.+++++|++.++ +||++||.++|+... ..++.|+ .+..+.+.|
T Consensus 89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~~Y 163 (699)
T 1z45_A 89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPY 163 (699)
T ss_dssp EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHH
T ss_pred EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCChH
Confidence 999996543323345667899999999999999999887 999999999998542 2456666 455667899
Q ss_pred HHHHHHHHHHHHHHHhh--cCCcEEEEeeCceeCCCCcc----C----CCchHHHHHHHHHc-CCCcEEec------CCc
Q 013467 260 DEGKRTAETLTMDYHRG--AGVEVRIARIFNTYGPRMCI----D----DGRVVSNFVAQALR-KEPLTVYG------DGK 322 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~--~g~~~~iiRp~~v~G~~~~~----~----~~~~~~~~~~~~~~-~~~~~~~~------~~~ 322 (442)
+.+|+++|.+++.++++ .+++++++||+++||++... + ...++..+...... +.++.+++ ++.
T Consensus 164 ~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 243 (699)
T 1z45_A 164 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 243 (699)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCC
Confidence 99999999999998776 68999999999999985321 1 12455544433332 24555555 678
Q ss_pred eeEeccCHHHHHHHHHHHHcCC------C--CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChH
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE------H--VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDIS 394 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~------~--~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 394 (442)
+.++|+|++|+|++++.+++.+ . .++||+++++.+++.|+++.+.+.+|.+..+...+....+.....+|++
T Consensus 244 ~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 323 (699)
T 1z45_A 244 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPD 323 (699)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCH
T ss_pred eeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCCHH
Confidence 8999999999999999988642 2 2489999999999999999999999988766554433344556789999
Q ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHhhc
Q 013467 395 RAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425 (442)
Q Consensus 395 k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~~ 425 (442)
|++++|||+|+++++++|+++++||+++...
T Consensus 324 ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~ 354 (699)
T 1z45_A 324 RAKRELKWQTELQVEDSCKDLWKWTTENPFG 354 (699)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999877543
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=302.93 Aligned_cols=300 Identities=18% Similarity=0.216 Sum_probs=208.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc--cccccCCCceeEEecccccc-----ccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN--VMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 188 (442)
+|+||||||+||||++|+++|+++|++|++++|+....... +.......++.++.+|+.+. ++.++|+|||+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 57899999999999999999999999999998864322110 00100123678888998764 456899999999
Q ss_pred ccCCCCcccCCh-hHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCc-cccCC---CCCCCCCCCCCCCCC---CCCC-C
Q 013467 189 CPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSE-VYGDP---LQHPQKETYWGNVNP---IGVR-S 257 (442)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~-vy~~~---~~~~~~E~~~~~~~~---~~~~-~ 257 (442)
+.... ...++ .+++++|+.|+.+++++|++.+ + +|||+||.+ +|+.. ...+++|+.|.+... ..+. .
T Consensus 89 ~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 166 (338)
T 2rh8_A 89 TPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTW 166 (338)
T ss_dssp SCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCC
T ss_pred CccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccc
Confidence 86421 12233 3478899999999999999986 6 999999987 44321 113677876543222 2211 2
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC------ceeEeccCHH
Q 013467 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG------KQTRSFQFVS 331 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~v~ 331 (442)
.|+.+|..+|.+++++.++.|++++++||++||||+........+..+. ..+.+... .++.. ...++|+|++
T Consensus 167 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~i~v~ 244 (338)
T 2rh8_A 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAM-SLITGNEF-LINGMKGMQMLSGSVSIAHVE 244 (338)
T ss_dssp CCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHH-HHHHTCHH-HHHHHHHHHHHHSSEEEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCcc-ccccccccccccCcccEEEHH
Confidence 5999999999999998877899999999999999975332222222221 22334322 12111 1234899999
Q ss_pred HHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCC-CCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHH
Q 013467 332 DLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDP-NAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLR 409 (442)
Q Consensus 332 Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~ 409 (442)
|+|++++.+++++.. +.|++++ +.+++.|+++.+.+.++. +.+..+.+. .. .....+|++|+ ++|||+|+++++
T Consensus 245 Dva~a~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~d~~k~-~~lG~~p~~~l~ 320 (338)
T 2rh8_A 245 DVCRAHIFVAEKESASGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGDF-PP-KSKLIISSEKL-VKEGFSFKYGIE 320 (338)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTTS-CS-SCSCCCCCHHH-HHHTCCCSCCHH
T ss_pred HHHHHHHHHHcCCCcCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCCC-Cc-CcceeechHHH-HHhCCCCCCCHH
Confidence 999999999987654 5888765 569999999999998752 222222111 11 12378899999 559999999999
Q ss_pred HHHHHHHHHHHHHh
Q 013467 410 KGLPKMVKDFRQRI 423 (442)
Q Consensus 410 e~l~~~~~~~~~~~ 423 (442)
++|+++++||++..
T Consensus 321 ~gl~~~~~~~~~~~ 334 (338)
T 2rh8_A 321 EIYDESVEYFKAKG 334 (338)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998653
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=299.63 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=226.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEE-ecccccc-----ccCCCCEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELI-RHDVVEP-----LLLEVDQI 184 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~-~~D~~~~-----~~~~~d~V 184 (442)
.++|+||||||+||||++++++|+++|++|++++|..... +.+...+ ...++.++ .+|+.+. .+.++|+|
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 87 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccH-HHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence 4567999999999999999999999999999999853211 1111110 11467777 7887664 45579999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHH-cCC-eEEEeecCccccCCCC----CCCCCCCCCC---------
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR-VGA-RFLLTSTSEVYGDPLQ----HPQKETYWGN--------- 249 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~-~g~-r~i~iSS~~vy~~~~~----~~~~E~~~~~--------- 249 (442)
||+||.... ..++...+++|+.++.+++++|.+ .++ +|||+||.++|+.... .+++|++|..
T Consensus 88 ih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 164 (342)
T 1y1p_A 88 AHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL 164 (342)
T ss_dssp EECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred EEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccc
Confidence 999996543 246788999999999999999985 565 9999999999864322 4677775421
Q ss_pred --CCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCC-chHHHHHHHHHcCCCcEEecCCcee
Q 013467 250 --VNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDG-RVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 250 --~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
..+..+.+.|+.+|+++|.+++.++++. +++++++||+++||+....... ..+..++..++.+.+..+++++ +.
T Consensus 165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 243 (342)
T 1y1p_A 165 PESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALM-PP 243 (342)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTC-CS
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccC-Cc
Confidence 1123345789999999999999998765 7899999999999997643322 3778888888888777656655 67
Q ss_pred EeccCHHHHHHHHHHHHcCCC-CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCC-
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGW- 402 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~- 402 (442)
++|+|++|+|++++.+++++. .|.+++++++.+|+.|+++.+.+.+|.+ .+.... .........+|++|+++.|||
T Consensus 244 ~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~d~~k~~~~lg~~ 321 (342)
T 1y1p_A 244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSK-TFPADF-PDQGQDLSKFDTAPSLEILKSL 321 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTS-CCCCCC-CCCCCCCCEECCHHHHHHHHHT
T ss_pred CCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCc-cCCCCC-CccccccccCChHHHHHHHhhc
Confidence 899999999999999998764 4644456677899999999999999875 222111 111223467899999999987
Q ss_pred --CcccCHHHHHHHHHHHHH
Q 013467 403 --EPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 403 --~p~~~l~e~l~~~~~~~~ 420 (442)
.+.++++++|+++++||+
T Consensus 322 ~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 322 GRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp TCCSCCCHHHHHHHHHCCSC
T ss_pred ccCCcCCHHHHHHHHHHHhh
Confidence 454599999999998874
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=293.95 Aligned_cols=300 Identities=21% Similarity=0.281 Sum_probs=210.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc--ccC--CCceeEEecccccc-----ccCCCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH--HFG--NPNFELIRHDVVEP-----LLLEVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~--~~~--~~~v~~~~~D~~~~-----~~~~~d~Vi 185 (442)
++++||||||+||||++++++|+++|++|++++|+..... .... .+. ..+++++.+|+.+. ++.++|+||
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 82 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK-KVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF 82 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHH-HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhH-HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 4679999999999999999999999999999998643211 1110 011 12577888888764 456899999
Q ss_pred EecccCCCCcccCCh-hHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCc-cccCCC-CCCCCCCCCCCCCC---C-CCC
Q 013467 186 HLACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSE-VYGDPL-QHPQKETYWGNVNP---I-GVR 256 (442)
Q Consensus 186 h~A~~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~-vy~~~~-~~~~~E~~~~~~~~---~-~~~ 256 (442)
|+|+... ....++ ..++++|+.|+.+++++|++.+ + +|||+||.+ +|+... ..+++|+.|.+... . .+.
T Consensus 83 h~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 160 (337)
T 2c29_D 83 HVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTA 160 (337)
T ss_dssp ECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCcc
Confidence 9998642 122333 3578999999999999999887 6 999999987 454432 23456664432110 1 133
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
..|+.+|..+|.+++++.++.|++++++||+++|||+........+.... ..+.+... .++.+ ...+|+|++|+|++
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~-~~~~~i~v~Dva~a 237 (337)
T 2c29_D 161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITAL-SPITGNEA-HYSII-RQGQFVHLDDLCNA 237 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHT-HHHHTCGG-GHHHH-TEEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCCc-ccccc-CCCCEEEHHHHHHH
Confidence 57999999999999998877899999999999999975322111111111 11333322 12221 23459999999999
Q ss_pred HHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCC-CCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHH
Q 013467 337 LMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDP-NAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414 (442)
Q Consensus 337 i~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~ 414 (442)
++.+++++.. +.|+++ ++.+++.|+++.+.+.++. +.+..+.+. ........+|++|+ ++|||+|+++++++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~ 314 (337)
T 2c29_D 238 HIYLFENPKAEGRYICS-SHDCIILDLAKMLREKYPEYNIPTEFKGV-DENLKSVCFSSKKL-TDLGFEFKYSLEDMFTG 314 (337)
T ss_dssp HHHHHHCTTCCEEEEEC-CEEEEHHHHHHHHHHHCTTSCCCSCCTTC-CTTCCCCEECCHHH-HHHTCCCCCCHHHHHHH
T ss_pred HHHHhcCcccCceEEEe-CCCCCHHHHHHHHHHHCCCccCCCCCCcc-cCCCccccccHHHH-HHcCCCcCCCHHHHHHH
Confidence 9999987654 577665 4568999999999998742 222222111 12334567899999 67999999999999999
Q ss_pred HHHHHHHHh
Q 013467 415 MVKDFRQRI 423 (442)
Q Consensus 415 ~~~~~~~~~ 423 (442)
+++||++..
T Consensus 315 ~~~~~~~~~ 323 (337)
T 2c29_D 315 AVDTCRAKG 323 (337)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999998764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=293.22 Aligned_cols=297 Identities=18% Similarity=0.220 Sum_probs=205.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeC-CCCC--CccccccccC--CCceeEEecccccc-----ccCCCCEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN-FFTG--RKENVMHHFG--NPNFELIRHDVVEP-----LLLEVDQIY 185 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r-~~~~--~~~~~~~~~~--~~~v~~~~~D~~~~-----~~~~~d~Vi 185 (442)
+|+||||||+||||++++++|+++|++|++++| +... ....+. .+. ..++.++.+|+.+. ++.++|+||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLT-NLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHH-TSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHH-hhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 368999999999999999999999999999988 4321 111111 011 12467788887764 456899999
Q ss_pred EecccCCCCcccCC-hhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCccc-cCCC-CCCCCCCCCCCCC---CCCCCC
Q 013467 186 HLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVY-GDPL-QHPQKETYWGNVN---PIGVRS 257 (442)
Q Consensus 186 h~A~~~~~~~~~~~-~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~vy-~~~~-~~~~~E~~~~~~~---~~~~~~ 257 (442)
|+|+.. .....+ ...++++|+.|+.+++++|++. ++ +|||+||.+++ +... ..+++|++|.+.. +..+..
T Consensus 80 h~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 80 HTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence 999753 112222 3458899999999999999988 66 99999998744 3322 2355666442211 112223
Q ss_pred -hhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 258 -CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 258 -~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
.|+.+|+.+|.++++++++.|++++++||+++|||+........+..+ ...+.+.... ++. ...+|+|++|+|++
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~-~~~~~g~~~~-~~~--~~~~~i~v~Dva~a 233 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKA-LVLVLGKKEQ-IGV--TRFHMVHVDDVARA 233 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHH-THHHHSCGGG-CCE--EEEEEEEHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHH-HHHHhCCCcc-CcC--CCcCEEEHHHHHHH
Confidence 699999999999999887789999999999999997532212222222 1223443332 222 33489999999999
Q ss_pred HHHHHcCCC-CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCC-CC-CCCCCccccChHHHHHhhCCCcccCHHHHHH
Q 013467 337 LMRLMEGEH-VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRP-NT-EDDPHKRKPDISRAKELLGWEPKVSLRKGLP 413 (442)
Q Consensus 337 i~~~l~~~~-~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~-~~-~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~ 413 (442)
++.+++++. .|.|| ++++.+|+.|+++.+.+.++. ..+.... .. ........+|++|+ +.|||+|+++++++|+
T Consensus 234 ~~~~~~~~~~~g~~~-~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~~~~~l~ 310 (322)
T 2p4h_X 234 HIYLLENSVPGGRYN-CSPFIVPIEEMSQLLSAKYPE-YQILTVDELKEIKGARLPDLNTKKL-VDAGFDFKYTIEDMFD 310 (322)
T ss_dssp HHHHHHSCCCCEEEE-CCCEEEEHHHHHHHHHHHCTT-SCCCCTTTTTTCCCEECCEECCHHH-HHTTCCCCCCHHHHHH
T ss_pred HHHHhhCcCCCCCEE-EcCCCCCHHHHHHHHHHhCCC-CCCCCCccccCCCCCcceecccHHH-HHhCCccCCCHHHHHH
Confidence 999998754 46888 667889999999999988742 2221110 00 01113467899999 5599999999999999
Q ss_pred HHHHHHHHH
Q 013467 414 KMVKDFRQR 422 (442)
Q Consensus 414 ~~~~~~~~~ 422 (442)
++++||++.
T Consensus 311 ~~~~~~~~~ 319 (322)
T 2p4h_X 311 DAIQCCKEK 319 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999865
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=292.21 Aligned_cols=287 Identities=14% Similarity=0.079 Sum_probs=222.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-----CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCC---CC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-----DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLE---VD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-----~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~---~d 182 (442)
+|+|||||||||||++++++|+++| ++|++++|...... ....+++++.+|+.+. ++.+ +|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDVT 74 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence 3689999999999999999999999 99999999654332 1235678889998764 3556 99
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc--CC-eEE-------EeecCccccCC--CCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--GA-RFL-------LTSTSEVYGDP--LQHPQKETYWGNV 250 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--g~-r~i-------~iSS~~vy~~~--~~~~~~E~~~~~~ 250 (442)
+|||+||... .++...+++|+.++.+++++|++. ++ +|| |+||.++||.. ...+++|+++
T Consensus 75 ~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~--- 146 (364)
T 2v6g_A 75 HVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP--- 146 (364)
T ss_dssp EEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC---
T ss_pred EEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc---
Confidence 9999998642 357788999999999999999998 66 887 79999999874 3456777742
Q ss_pred CCCCC-CChhHHHHHHHHHHHHHHHhhcC-CcEEEEeeCceeCCCCccCCCchHHHHHHHHH---cCCCcEEecCC---c
Q 013467 251 NPIGV-RSCYDEGKRTAETLTMDYHRGAG-VEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL---RKEPLTVYGDG---K 322 (442)
Q Consensus 251 ~~~~~-~~~Y~~sK~~~E~~v~~~~~~~g-~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~ 322 (442)
..+ .+.| +.+|.+++++.++.+ ++++++||+++|||+.......++..++...+ .+.++.+++++ .
T Consensus 147 --~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 220 (364)
T 2v6g_A 147 --RLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWD 220 (364)
T ss_dssp --CCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHH
T ss_pred --CCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCccccc
Confidence 222 4567 458999999887776 99999999999999864222333444333333 57777667776 3
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccCHHHHHHHHHHHhCCCCceE--eCCCC----------------
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFTMLELAQVVQETIDPNAKIE--FRPNT---------------- 382 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~--~~~~~---------------- 382 (442)
...++++++|+|++++.+++++. .| +||+++++.+|+.|+++.+.+.+|.+.... ..+..
T Consensus 221 ~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 300 (364)
T 2v6g_A 221 GYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIV 300 (364)
T ss_dssp SCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHHHHHH
Confidence 45788899999999999998874 45 999999999999999999999999765432 12211
Q ss_pred ------CC---CC-----------Cc-cccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 383 ------ED---DP-----------HK-RKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 383 ------~~---~~-----------~~-~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
.. .. .. ..+|++|+++ |||+|.++++++|+++++||++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 301 RENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp HHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 00 00 33 5789999988 999998899999999999998764
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=285.89 Aligned_cols=273 Identities=19% Similarity=0.208 Sum_probs=211.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC--
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV-- 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~-- 194 (442)
|||||||||||||++|+++|+++||+|++++|+.... ++...++....+.++|+|||+|+.....
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-------------~~~~~~~~~~~l~~~d~vihla~~~i~~~~ 67 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-------------RITWDELAASGLPSCDAAVNLAGENILNPL 67 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------EEEHHHHHHHCCCSCSEEEECCCCCSSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-------------eeecchhhHhhccCCCEEEEeccCcccchh
Confidence 6899999999999999999999999999999853211 1111123345678899999999853221
Q ss_pred -cccC-ChhHHHHHhHHHHHHHHHHHHHcCC---eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 195 -HYKF-NPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 195 -~~~~-~~~~~~~~nv~gt~~ll~~a~~~g~---r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
.|.. ....+++.|+.+|.+|++++++.+. +||++||.++||.....+..|+ ++..+.+.|+..|...|..
T Consensus 68 ~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~-----~p~~~~~~~~~~~~~~e~~ 142 (298)
T 4b4o_A 68 RRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDED-----SPGGDFDFFSNLVTKWEAA 142 (298)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTT-----CCCSCSSHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCccccc-----CCccccchhHHHHHHHHHH
Confidence 2222 2456788999999999999998874 5899999999999888888888 5666777888888777764
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-Ccc
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGP 348 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g~ 348 (442)
. .....+++++++||+.||||+ +..+..+......+.. ..++++++.++|+|++|+++++..+++++. .|+
T Consensus 143 ~--~~~~~~~~~~~~r~~~v~g~~-----~~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~g~ 214 (298)
T 4b4o_A 143 A--RLPGDSTRQVVVRSGVVLGRG-----GGAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALEANHVHGV 214 (298)
T ss_dssp H--CCSSSSSEEEEEEECEEECTT-----SHHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHHCTTCCEE
T ss_pred H--HhhccCCceeeeeeeeEEcCC-----CCchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHhCCCCCCe
Confidence 3 234568999999999999986 3455666655555543 446899999999999999999999999876 469
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCC-----------CCCccccChHHHHHhhCCCccc-CHHHHHHHHH
Q 013467 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED-----------DPHKRKPDISRAKELLGWEPKV-SLRKGLPKMV 416 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~-----------~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~~ 416 (442)
||+++++++|+.|+++.+++.+|++..+.. |.... ......+.+.|+++ +||++++ +++++|++++
T Consensus 215 yn~~~~~~~t~~e~~~~ia~~lgrp~~~pv-P~~~~~~~~g~~~~~~~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l~ 292 (298)
T 4b4o_A 215 LNGVAPSSATNAEFAQTFGAALGRRAFIPL-PSAVVQAVFGRQRAIMLLEGQKVIPRRTLA-TGYQYSFPELGAALKEIA 292 (298)
T ss_dssp EEESCSCCCBHHHHHHHHHHHHTCCCCCCB-CHHHHHHHHCHHHHHHHHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHHhCcCCcccC-CHHHHHHHhcchhHHHhhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999998754421 21100 00123467889876 9999998 6999999888
Q ss_pred H
Q 013467 417 K 417 (442)
Q Consensus 417 ~ 417 (442)
+
T Consensus 293 ~ 293 (298)
T 4b4o_A 293 E 293 (298)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=277.15 Aligned_cols=260 Identities=18% Similarity=0.183 Sum_probs=209.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--CCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A~ 189 (442)
|+|+||||+||||++++++|++ |++|++++|..... .+ +.+|+.+. .+. ++|+|||+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 66 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAA 66 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence 5799999999999999999994 89999999965311 11 66777654 333 3999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
.........++...+++|+.++.+++++|++.+++||++||..+|+.... ++.|+ .+..+.+.|+.+|+.+|.+
T Consensus 67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~-~~~e~-----~~~~~~~~Y~~sK~~~e~~ 140 (273)
T 2ggs_A 67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKG-NYKEE-----DIPNPINYYGLSKLLGETF 140 (273)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSC-SBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCC-CcCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 65433233567889999999999999999998889999999999976433 67777 4556678999999999998
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccE
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPF 349 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~ 349 (442)
++. ++++++||+.+||+ ..+...++.....+..+..+++ .+++++++|+|++++.+++++..|+|
T Consensus 141 ~~~------~~~~~iR~~~v~G~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~~g~~ 205 (273)
T 2ggs_A 141 ALQ------DDSLIIRTSGIFRN------KGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRKTGII 205 (273)
T ss_dssp HCC------TTCEEEEECCCBSS------SSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTCCEEE
T ss_pred HhC------CCeEEEeccccccc------cHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCcCCeE
Confidence 855 67899999999983 3455666666677777776554 78999999999999999988777899
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCCceEeCC----CCCCCCCccccChHHHHHhhCCCc-ccCHHHHH
Q 013467 350 NLGNPGEFTMLELAQVVQETIDPNAKIEFRP----NTEDDPHKRKPDISRAKELLGWEP-KVSLRKGL 412 (442)
Q Consensus 350 ~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~----~~~~~~~~~~~d~~k~~~~LG~~p-~~~l~e~l 412 (442)
|+++ +.+|+.|+++.+.+.+|.+..+.... .....+....+|++|++++|||+| .++++++|
T Consensus 206 ~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 206 HVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp ECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred EECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 9999 99999999999999999887654321 122345567899999999999999 57888865
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=300.24 Aligned_cols=277 Identities=18% Similarity=0.168 Sum_probs=205.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccc---cccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---VEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~d~Vih~A~~~~ 192 (442)
+|+|||||||||||++|+++|+++|++|++++|...... .+.+|+ ....+.++|+|||+|+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-------------~v~~d~~~~~~~~l~~~D~Vih~A~~~~ 213 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-------------KRFWDPLNPASDLLDGADVLVHLAGEPI 213 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-------------CEECCTTSCCTTTTTTCSEEEECCCC--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-------------ceeecccchhHHhcCCCCEEEECCCCcc
Confidence 789999999999999999999999999999999654321 123333 3446678999999999754
Q ss_pred CCccc-CChhHHHHHhHHHHHHHHHH-HHHcCC-eEEEeecCcccc-CCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 193 PVHYK-FNPVKTIKTNVVGTLNMLGL-AKRVGA-RFLLTSTSEVYG-DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 193 ~~~~~-~~~~~~~~~nv~gt~~ll~~-a~~~g~-r~i~iSS~~vy~-~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
...+. ..+..++++|+.++.+|+++ +++.++ +|||+||.++|| .....+++|+. +. +.+.|+.+|...|.
T Consensus 214 ~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~-----~~-~~~~y~~~~~~~E~ 287 (516)
T 3oh8_A 214 FGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEES-----ES-GDDFLAEVCRDWEH 287 (516)
T ss_dssp ---CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTS-----CC-CSSHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCC-----CC-CcChHHHHHHHHHH
Confidence 43333 34677899999999999999 566676 999999999998 55555677773 33 56789999999998
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-Cc
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG 347 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g 347 (442)
++..+ +..|++++++||+++||++ ..++..++..+..+... .++++++.++|+|++|+|++++.+++++. .|
T Consensus 288 ~~~~~-~~~gi~~~ilRp~~v~Gp~-----~~~~~~~~~~~~~g~~~-~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~g 360 (516)
T 3oh8_A 288 ATAPA-SDAGKRVAFIRTGVALSGR-----GGMLPLLKTLFSTGLGG-KFGDGTSWFSWIAIDDLTDIYYRAIVDAQISG 360 (516)
T ss_dssp TTHHH-HHTTCEEEEEEECEEEBTT-----BSHHHHHHHTTC---CC-CCTTSCCEECEEEHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHH-HhCCCCEEEEEeeEEECCC-----CChHHHHHHHHHhCCCc-ccCCCCceEceEeHHHHHHHHHHHHhCcccCC
Confidence 87554 5679999999999999986 34566665554444333 56888999999999999999999999875 46
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC----CC-------CCccccChHHHHHhhCCCcccC-HHHHHHHH
Q 013467 348 PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE----DD-------PHKRKPDISRAKELLGWEPKVS-LRKGLPKM 415 (442)
Q Consensus 348 ~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~----~~-------~~~~~~d~~k~~~~LG~~p~~~-l~e~l~~~ 415 (442)
+||+++++.+|+.|+++.+.+.+|.+..+....... .. .....++++|+++ |||+|+++ |+++|+++
T Consensus 361 ~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~-lG~~~~~~~l~e~l~~~ 439 (516)
T 3oh8_A 361 PINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALEN-LSHTFRYTDIGAAIAHE 439 (516)
T ss_dssp EEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHHH-TTCCCSCSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHH-CCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999876333211100 11 1133568899985 99999997 99999999
Q ss_pred HHHH
Q 013467 416 VKDF 419 (442)
Q Consensus 416 ~~~~ 419 (442)
++..
T Consensus 440 l~~~ 443 (516)
T 3oh8_A 440 LGYE 443 (516)
T ss_dssp HTCC
T ss_pred hCcc
Confidence 9865
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=274.04 Aligned_cols=299 Identities=18% Similarity=0.146 Sum_probs=217.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc--ccccc-----------ccCCCceeEEecccccc----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK--ENVMH-----------HFGNPNFELIRHDVVEP---- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~--~~~~~-----------~~~~~~v~~~~~D~~~~---- 176 (442)
..+|+|||||||||||++++++|+++|++|++++|+..... +.+.. .....++.++.+|+.+.
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 45679999999999999999999999999999999754110 00000 00125788899998773
Q ss_pred ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC-----CCCCCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD-----PLQHPQKETYWGNVN 251 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~-----~~~~~~~E~~~~~~~ 251 (442)
.+.++|+|||+||... ...++...+++|+.++.+++++|++.+.+|||+||..+ |. ....++.|+++..
T Consensus 147 ~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~-- 220 (427)
T 4f6c_A 147 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK-- 220 (427)
T ss_dssp CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCS--
T ss_pred CcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCCCCcccccccccc--
Confidence 3457999999999653 33467788899999999999999994359999999998 53 2345677774421
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC-----CCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+..+.+.|+.+|+.+|.+++++.+ .|++++++|||+|||+..... ...++..++.....+..++. ++++..++
T Consensus 221 ~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 298 (427)
T 4f6c_A 221 GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVD 298 (427)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEEC
T ss_pred CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccceEE
Confidence 234678999999999999999854 689999999999999975321 12346677777777776664 44678899
Q ss_pred ccCHHHHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC------C------------CCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT------E------------DDPH 387 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~------~------------~~~~ 387 (442)
|++++|+|++++.++..+.. ++||+++++++++.|+++.+.+ ++ .+....+.+ . ....
T Consensus 299 ~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 375 (427)
T 4f6c_A 299 FSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQDMYETIGLTSVDREQQ 375 (427)
T ss_dssp CEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTSE
T ss_pred EeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhcCchhhhhhhhccccCC
Confidence 99999999999999988754 4999999999999999999998 55 221110000 0 0112
Q ss_pred ccccChHHHH---HhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 388 KRKPDISRAK---ELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 388 ~~~~d~~k~~---~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
...+|+++.. +.+||.+...-++.++.+++++++..
T Consensus 376 ~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~ 414 (427)
T 4f6c_A 376 LAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIF 414 (427)
T ss_dssp ECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566777766 45799887444558999999888774
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=278.96 Aligned_cols=299 Identities=18% Similarity=0.144 Sum_probs=218.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc--ccc-----------cccCCCceeEEecccccc----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVM-----------HHFGNPNFELIRHDVVEP---- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~--~~~-----------~~~~~~~v~~~~~D~~~~---- 176 (442)
..+|+|||||||||||++|+++|+++|++|++++|....... .+. ......++.++.+|+.+.
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 346799999999999999999999999999999996542100 000 001235789999999883
Q ss_pred ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccC-----CCCCCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD-----PLQHPQKETYWGNVN 251 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~-----~~~~~~~E~~~~~~~ 251 (442)
...++|+|||+||... +..++..++++|+.++.+++++|++.+++|||+||.++ |. ....++.|+++..
T Consensus 228 ~~~~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~-- 301 (508)
T 4f6l_B 228 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK-- 301 (508)
T ss_dssp CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSCS--
T ss_pred CccCCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCcccccccccc--
Confidence 3457999999998643 34567778899999999999999995459999999998 43 2345667774421
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC-----CCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+..+.+.|+.+|+.+|.+++++.+ .|++++++||++|||++.... ...++..++.....++.++. ++++..++
T Consensus 302 ~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~ 379 (508)
T 4f6l_B 302 GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVD 379 (508)
T ss_dssp SBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEE
T ss_pred cccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEE
Confidence 233668999999999999999854 699999999999999975321 12346677777777665553 44678999
Q ss_pred ccCHHHHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC------------------CCCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT------------------EDDPH 387 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~------------------~~~~~ 387 (442)
|++++|+|++++.++.++.. ++||+++++.++|.|+++.+.+.. .+....+.+ .....
T Consensus 380 ~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~ 456 (508)
T 4f6l_B 380 FSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQKQDMYETIGLTSVDREQQ 456 (508)
T ss_dssp CEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSE
T ss_pred EEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHHhcCCccchhcccccccCc
Confidence 99999999999999988754 599999999999999999999764 211110000 00112
Q ss_pred ccccChHHHH---HhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 388 KRKPDISRAK---ELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 388 ~~~~d~~k~~---~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
...+|+++.. +.+||.+....++.++++++++++..
T Consensus 457 ~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~ 495 (508)
T 4f6l_B 457 LAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIF 495 (508)
T ss_dssp ECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3456766655 44799887555778999999888774
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=274.84 Aligned_cols=258 Identities=19% Similarity=0.179 Sum_probs=195.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhC---CCeEEEEeCCCCCCc--cccccccC--------------CCceeEEeccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIAR---GDSVIVVDNFFTGRK--ENVMHHFG--------------NPNFELIRHDV 173 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~---g~~V~~l~r~~~~~~--~~~~~~~~--------------~~~v~~~~~D~ 173 (442)
..++|+|||||||||||++++++|+++ |++|++++|...... ..+...+. ..++.++.+|+
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 346789999999999999999999999 899999999644211 11111111 25789999999
Q ss_pred ccc-----------ccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCC
Q 013467 174 VEP-----------LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHP 241 (442)
Q Consensus 174 ~~~-----------~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~ 241 (442)
.+. .+.++|+|||+||.... .++...+++|+.++.+++++|++.++ +|||+||.++|+.....+
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 743 23469999999997543 45667889999999999999999997 999999999999877777
Q ss_pred CCCCCCCC-CCC-----CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCc---cCCCchHHHHHHHHHcC
Q 013467 242 QKETYWGN-VNP-----IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC---IDDGRVVSNFVAQALRK 312 (442)
Q Consensus 242 ~~E~~~~~-~~~-----~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~---~~~~~~~~~~~~~~~~~ 312 (442)
+.|+.... ..+ ....+.|+.+|+.+|.++++++++.|++++++||++|||++.. .+...++..++......
T Consensus 226 ~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~ 305 (478)
T 4dqv_A 226 FTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMAT 305 (478)
T ss_dssp CCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHH
T ss_pred cCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHc
Confidence 77774210 000 1112559999999999999998878999999999999998541 12345666666655543
Q ss_pred CCcEEe--c---C---CceeEeccCHHHHHHHHHHHHcC----CC-C-ccEEecCCCc--cCHHHHHHHHHHHhCCCCc
Q 013467 313 EPLTVY--G---D---GKQTRSFQFVSDLVEGLMRLMEG----EH-V-GPFNLGNPGE--FTMLELAQVVQETIDPNAK 375 (442)
Q Consensus 313 ~~~~~~--~---~---~~~~~~~v~v~Dva~ai~~~l~~----~~-~-g~~~i~~~~~--~s~~dl~~~l~~~~g~~~~ 375 (442)
+..+.. + + ++..++|+|++|+|++++.++.+ +. . ++||+++++. +++.|+++.+.+. |.+..
T Consensus 306 g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~-g~~~~ 383 (478)
T 4dqv_A 306 GIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA-GYPIR 383 (478)
T ss_dssp CEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT-TCSCE
T ss_pred CcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc-CCCcc
Confidence 333211 1 1 25778999999999999999875 32 2 4999999887 9999999999996 66554
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=252.11 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=194.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
|+|+|||||||||++++++|+++ |++|++++|+..... .+ ...++.++.+|+.+. ++.++|+|||+|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~l----~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS-TL----ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH-HH----HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh-HH----hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 47999999999999999999999 999999999643221 11 123678888888764 5678999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
.. . . . ++|+.++.+++++|++.++ +|||+||.++|.. + ..|+.+|..+|.
T Consensus 76 ~~----~--~--~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~----~~y~~~K~~~E~ 126 (287)
T 2jl1_A 76 PH----Y--D--N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES---------------I----IPLAHVHLATEY 126 (287)
T ss_dssp CC----S--C--H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------C----STHHHHHHHHHH
T ss_pred CC----c--C--c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------C----CchHHHHHHHHH
Confidence 52 1 1 1 5799999999999999997 9999999987621 1 369999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-Cc
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG 347 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g 347 (442)
++++ .|++++++||+.++|+.. ..++ ...+..+... ++.++..++|+|++|+|++++.+++++. .|
T Consensus 127 ~~~~----~~~~~~ilrp~~~~~~~~----~~~~----~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g 193 (287)
T 2jl1_A 127 AIRT----TNIPYTFLRNALYTDFFV----NEGL----RASTESGAIV-TNAGSGIVNSVTRNELALAAATVLTEEGHEN 193 (287)
T ss_dssp HHHH----TTCCEEEEEECCBHHHHS----SGGG----HHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHTSSSCTT
T ss_pred HHHH----cCCCeEEEECCEeccccc----hhhH----HHHhhCCcee-ccCCCCccCccCHHHHHHHHHHHhcCCCCCC
Confidence 8854 689999999999887531 1122 2223222333 4566778899999999999999998763 44
Q ss_pred -cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC--------CCC----------------CccccChHHHHHhhCC
Q 013467 348 -PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE--------DDP----------------HKRKPDISRAKELLGW 402 (442)
Q Consensus 348 -~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~--------~~~----------------~~~~~d~~k~~~~LG~ 402 (442)
+||+++++.+|+.|+++.+.+.+|.+..+...+... ..+ .....|++++++.||
T Consensus 194 ~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG- 272 (287)
T 2jl1_A 194 KTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIG- 272 (287)
T ss_dssp EEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHS-
T ss_pred cEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHHHHHhC-
Confidence 999999999999999999999999987766554310 001 234668899999999
Q ss_pred CcccCHHHHHHHHHH
Q 013467 403 EPKVSLRKGLPKMVK 417 (442)
Q Consensus 403 ~p~~~l~e~l~~~~~ 417 (442)
|.++++|+|+++++
T Consensus 273 -~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 273 -SLTPLKETVKQALK 286 (287)
T ss_dssp -SCCCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHhc
Confidence 55699999998875
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=271.54 Aligned_cols=249 Identities=24% Similarity=0.285 Sum_probs=202.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVH 195 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~ 195 (442)
|+|||||||||||++|+++|+++|+ +|++++|. .+.+..+..+.++|+|||+||....
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------~d~~~l~~~~~~~d~Vih~a~~~~~-- 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELESALLKADFIVHLAGVNRP-- 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------CCHHHHHHHHHHCSEEEECCCSBCT--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------CCHHHHHHHhccCCEEEECCcCCCC--
Confidence 6899999999999999999999999 99999873 1112233455579999999996543
Q ss_pred ccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 013467 196 YKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273 (442)
Q Consensus 196 ~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~ 273 (442)
.++...+++|+.++.+++++|++.++ +|||+||..+|+ .+.|+.+|+.+|.+++++
T Consensus 60 --~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y~~sK~~~E~~~~~~ 117 (369)
T 3st7_A 60 --EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPYGESKLQGEQLLREY 117 (369)
T ss_dssp --TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCchHHHHHHHHHHHHH
Confidence 24555678999999999999999984 799999999985 278999999999999999
Q ss_pred HhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC---ccEE
Q 013467 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV---GPFN 350 (442)
Q Consensus 274 ~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~---g~~~ 350 (442)
+++.|++++++||+++||++...+...++..++..+..+.++.+ ++++..++|+|++|+|++++.+++++.. ++||
T Consensus 118 ~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~ 196 (369)
T 3st7_A 118 AEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPT 196 (369)
T ss_dssp HHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEEC
T ss_pred HHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceEE
Confidence 98889999999999999998755556788999998888887775 4788999999999999999999998865 4999
Q ss_pred ecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 351 LGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 351 i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
+++++.+|+.|+++.+.+.+|.+..+...+. ............|||.|..++++.++..
T Consensus 197 i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~------~~~~~~~l~~~~l~~~p~~~~~~~l~~~ 255 (369)
T 3st7_A 197 VPNVFKVTLGEIVDLLYKFKQSRLDRTLPKL------DNLFEKDLYSTYLSYLPSTDFSYPLLMN 255 (369)
T ss_dssp CSCCEEEEHHHHHHHHHHHHHHHHHTCCCCT------TSHHHHHHHHHHHHTSCTTCSCCCCCEE
T ss_pred eCCCCceeHHHHHHHHHHHhCCCcccccCCC------CCHHHHHHHHHHhcccCCcceeechhhc
Confidence 9999999999999999999987644332111 1112224445568999987777655443
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=255.96 Aligned_cols=262 Identities=21% Similarity=0.265 Sum_probs=201.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhC-CC-eEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIAR-GD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIY 185 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~-g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vi 185 (442)
..++|+|||||||||||++++++|+++ |+ +|++++|+.... ..+...+...++.++.+|+.+. ++.++|+||
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi 96 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQ-SEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICI 96 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHH-HHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhH-HHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence 356789999999999999999999999 97 999999853221 1122222335788999998774 467899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
|+||.........++...+++|+.|+.+++++|.+.++ +||++||..++ . +.+.|+.+|+
T Consensus 97 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~----------------~---p~~~Y~~sK~ 157 (344)
T 2gn4_A 97 HAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA----------------N---PINLYGATKL 157 (344)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS----------------S---CCSHHHHHHH
T ss_pred ECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC----------------C---CccHHHHHHH
Confidence 99997543223345778999999999999999999997 99999997654 1 2378999999
Q ss_pred HHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCC-CcEEecCCceeEeccCHHHHHHHHHHH
Q 013467 265 TAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 265 ~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
++|.+++.+.++ .|++++++|||++||++ +++++.+...+..+. ++.+. ++...++|++++|+|++++.+
T Consensus 158 ~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~-----~~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~ 231 (344)
T 2gn4_A 158 CSDKLFVSANNFKGSSQTQFSVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKS 231 (344)
T ss_dssp HHHHHHHHGGGCCCSSCCEEEEECCCEETTCT-----TSHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEeccEECCC-----CCHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHH
Confidence 999999998754 58999999999999986 457788888888887 67754 777889999999999999999
Q ss_pred HcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCC-CCCccccChHHHHHhhCCCcc
Q 013467 341 MEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED-DPHKRKPDISRAKELLGWEPK 405 (442)
Q Consensus 341 l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~-~~~~~~~d~~k~~~~LG~~p~ 405 (442)
++++..| +|++.++ .+++.|+++.+.+.. .+........ ......++..+.++.++|...
T Consensus 232 l~~~~~g~~~~~~~~-~~s~~el~~~i~~~~----~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~ 293 (344)
T 2gn4_A 232 LKRMHGGEIFVPKIP-SMKMTDLAKALAPNT----PTKIIGIRPGEKLHEVMIPKDESHLALEFEDF 293 (344)
T ss_dssp HHHCCSSCEEEECCC-EEEHHHHHHHHCTTC----CEEECCCCTTCCSSCEEECGGGGGGEEECSSE
T ss_pred HhhccCCCEEecCCC-cEEHHHHHHHHHHhC----CeeEcCCCCCccHhhhccCHhHHHhhccCCCE
Confidence 9887666 8988765 699999999998654 2333222211 122334455666666666654
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=247.20 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=184.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~ 190 (442)
||+|+|||||||||++++++|+++|++|++++|...... ..++.++.+|+.+. .+.++|+|||+|+.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 73 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV 73 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence 358999999999999999999999999999998643211 13567888888764 46689999999986
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCC-CCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP-LQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~-~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
. ....+...+++|+.++.+++++|++.++ +||++||..+|+.. ...+++|+ .+..+.+.|+.+|+.+|.
T Consensus 74 ~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~ 144 (267)
T 3ay3_A 74 S----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLYGLSKCFGED 144 (267)
T ss_dssp C----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred C----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHHH
Confidence 4 2345678899999999999999999987 99999999999864 34577787 566677899999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC--
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-- 346 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-- 346 (442)
+++.+.++.|++++++||+++|+... ++...++|++++|+|++++.+++++..
T Consensus 145 ~~~~~~~~~gi~~~~lrp~~v~~~~~-------------------------~~~~~~~~~~~~dva~~~~~~~~~~~~~~ 199 (267)
T 3ay3_A 145 LASLYYHKFDIETLNIRIGSCFPKPK-------------------------DARMMATWLSVDDFMRLMKRAFVAPKLGC 199 (267)
T ss_dssp HHHHHHHTTCCCEEEEEECBCSSSCC-------------------------SHHHHHHBCCHHHHHHHHHHHHHSSCCCE
T ss_pred HHHHHHHHcCCCEEEEeceeecCCCC-------------------------CCCeeeccccHHHHHHHHHHHHhCCCCCc
Confidence 99998888899999999999985210 112346899999999999999998765
Q ss_pred ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHH
Q 013467 347 GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417 (442)
Q Consensus 347 g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~ 417 (442)
++|++.++. ...+.|..++ +.|||+|+++++++++++.+
T Consensus 200 ~~~~~~~~~-------------------------------~~~~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 200 TVVYGASAN-------------------------------TESWWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp EEEEECCSC-------------------------------SSCCBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred eeEecCCCc-------------------------------cccccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 377776432 1234677777 78999999999999988765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=251.67 Aligned_cols=252 Identities=14% Similarity=0.171 Sum_probs=189.7
Q ss_pred EEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~ 190 (442)
+|+|||||||||++++++|+++ |++|++++|+..... .+ ...++.++.+|+.+. ++.++|+|||+|+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~----~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ-AL----AAQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH-HH----HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh-hh----hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4899999999999999999999 999999999643321 11 113578888888764 56789999999984
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
.. +.|+.++.+++++|++.++ +||++||.++|. .+ ..|+.+|..+|.+
T Consensus 76 ~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~sK~~~e~~ 124 (286)
T 2zcu_A 76 EV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT---------------SP----LGLADEHIETEKM 124 (286)
T ss_dssp ------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT---------------CC----STTHHHHHHHHHH
T ss_pred Cc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------Cc----chhHHHHHHHHHH
Confidence 20 2578899999999999997 999999998861 11 4699999999998
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-Cc-
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG- 347 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g- 347 (442)
+++ .|++++++||+.++++. ..++...+.++.+. +++++..++|+|++|+|++++.+++++. .|
T Consensus 125 ~~~----~~~~~~ilrp~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~ 190 (286)
T 2zcu_A 125 LAD----SGIVYTLLRNGWYSENY---------LASAPAALEHGVFI-GAAGDGKIASATRADYAAAAARVISEAGHEGK 190 (286)
T ss_dssp HHH----HCSEEEEEEECCBHHHH---------HTTHHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTC
T ss_pred HHH----cCCCeEEEeChHHhhhh---------HHHhHHhhcCCcee-ccCCCCccccccHHHHHHHHHHHhcCCCCCCc
Confidence 864 58999999998766542 11222333333444 5667788999999999999999998764 34
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC--------CCC----------------CccccChHHHHHhhCCC
Q 013467 348 PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE--------DDP----------------HKRKPDISRAKELLGWE 403 (442)
Q Consensus 348 ~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~--------~~~----------------~~~~~d~~k~~~~LG~~ 403 (442)
+||+++++.+|+.|+++.+.+.+|.+..+...+... ..+ .....|++++++.|||.
T Consensus 191 ~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 270 (286)
T 2zcu_A 191 VYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGHP 270 (286)
T ss_dssp EEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTSC
T ss_pred eEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHHHHhCcC
Confidence 999999999999999999999999987766554321 011 12456889999999986
Q ss_pred cccCHHHHHHHHHHHHH
Q 013467 404 PKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 404 p~~~l~e~l~~~~~~~~ 420 (442)
|. +++++|+++++||.
T Consensus 271 ~~-~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 271 TT-TLAESVSHLFNVNN 286 (286)
T ss_dssp CC-CHHHHHHGGGC---
T ss_pred CC-CHHHHHHHHHhhcC
Confidence 64 99999999998873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=238.18 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=164.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~ 190 (442)
||+|+|||||||||++++++|+++|++|++++|....... ...+++++.+|+.+. .+.++|+|||+|+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI------ENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC------CCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh------ccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 6799999999999999999999999999999996432211 125788999998764 56789999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
.. .....+++|+.++.+++++|++.++ +|||+||.++|+...... .|+ .+..+.+.|+.+|+.+|.+
T Consensus 78 ~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~-----~~~~p~~~Y~~sK~~~e~~ 145 (227)
T 3dhn_A 78 GW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMD-----SGEVPENILPGVKALGEFY 145 (227)
T ss_dssp ------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGG-----TTCSCGGGHHHHHHHHHHH
T ss_pred CC------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-ccc-----CCcchHHHHHHHHHHHHHH
Confidence 31 1123667899999999999999997 999999998775433322 222 3555668899999999999
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c-
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G- 347 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g- 347 (442)
++.+.++.|++++++||+++||++..... + ..+....+. .+.. ++|+|++|+|++++.+++++.. |
T Consensus 146 ~~~~~~~~~~~~~ilrp~~v~g~~~~~~~--~--------~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~~~~~~g~ 213 (227)
T 3dhn_A 146 LNFLMKEKEIDWVFFSPAADMRPGVRTGR--Y--------RLGKDDMIV-DIVG-NSHISVEDYAAAMIDELEHPKHHQE 213 (227)
T ss_dssp HHTGGGCCSSEEEEEECCSEEESCCCCCC--C--------EEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHHSCCCCSE
T ss_pred HHHHhhccCccEEEEeCCcccCCCccccc--e--------eecCCCccc-CCCC-CcEEeHHHHHHHHHHHHhCccccCc
Confidence 99988788999999999999999753211 1 122222222 2222 7999999999999999999864 4
Q ss_pred cEEecCCCccCHHH
Q 013467 348 PFNLGNPGEFTMLE 361 (442)
Q Consensus 348 ~~~i~~~~~~s~~d 361 (442)
.|+++++++.+|.+
T Consensus 214 ~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 214 RFTIGYLEHHHHHH 227 (227)
T ss_dssp EEEEECCSCCC---
T ss_pred EEEEEeehhcccCC
Confidence 99999999988863
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=237.44 Aligned_cols=202 Identities=20% Similarity=0.243 Sum_probs=168.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
+||+|+||||+||||++++++|+++|++|++++|...... ..++.++.+|+.+. .+.++|+||||||
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag 73 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLGG 73 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence 3568999999999999999999999999999999643322 35788899998774 4678999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccC-CCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~-~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
.. ...+++.++++|+.|+.+++++|++.++ +||++||..+|+. ....+++|+ .+..+.+.|+.+|+.+|
T Consensus 74 ~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~~~e 144 (267)
T 3rft_A 74 IS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLYGVSKCFGE 144 (267)
T ss_dssp CC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred Cc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHH
Confidence 63 3456788999999999999999999987 9999999999974 344566776 56677799999999999
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCc
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g 347 (442)
.+++.++++.|+++++|||+.+||+. .++....+|++++|+++++..+++.+..+
T Consensus 145 ~~~~~~a~~~g~~~~~vr~~~v~~~~-------------------------~~~~~~~~~~~~~d~a~~~~~~~~~~~~~ 199 (267)
T 3rft_A 145 NLARMYFDKFGQETALVRIGSCTPEP-------------------------NNYRMLSTWFSHDDFVSLIEAVFRAPVLG 199 (267)
T ss_dssp HHHHHHHHHHCCCEEEEEECBCSSSC-------------------------CSTTHHHHBCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhCCeEEEEEeecccCCC-------------------------CCCCceeeEEcHHHHHHHHHHHHhCCCCC
Confidence 99999998899999999999999862 23345568899999999999999988764
Q ss_pred --cEEecCCCccC
Q 013467 348 --PFNLGNPGEFT 358 (442)
Q Consensus 348 --~~~i~~~~~~s 358 (442)
++++++++..+
T Consensus 200 ~~~~~~~s~~~~~ 212 (267)
T 3rft_A 200 CPVVWGASANDAG 212 (267)
T ss_dssp SCEEEECCCCTTC
T ss_pred ceEEEEeCCCCCC
Confidence 78888765443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=226.84 Aligned_cols=212 Identities=17% Similarity=0.236 Sum_probs=164.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCce-eEEecccc---ccccCCCCEEEEe
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF-ELIRHDVV---EPLLLEVDQIYHL 187 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D~~---~~~~~~~d~Vih~ 187 (442)
...++|+|+|||||||||++++++|+++|++|++++|+.....+ + ...++ .++.+|+. ...+.++|+|||+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~-~----~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE-L----RERGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH-H----HHTTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH-H----HhCCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 45678899999999999999999999999999999996432211 1 12367 88888876 3356689999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
||... ..++...+++|+.++.+++++|++.++ +||++||.+.+.. +. .+ .+...|+.+|..+
T Consensus 92 ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~-----~~-~~~~~Y~~sK~~~ 154 (236)
T 3e8x_A 92 AGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQ-----GP-MNMRHYLVAKRLA 154 (236)
T ss_dssp CCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GG-----SC-GGGHHHHHHHHHH
T ss_pred CCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CC-----Ch-hhhhhHHHHHHHH
Confidence 99643 246788999999999999999999997 9999999654421 11 11 3447899999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH- 345 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~- 345 (442)
|.+++ ..|++++++||++++|+.. ...+....++....++++++|+|++++.+++++.
T Consensus 155 e~~~~----~~gi~~~~lrpg~v~~~~~-----------------~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~ 213 (236)
T 3e8x_A 155 DDELK----RSSLDYTIVRPGPLSNEES-----------------TGKVTVSPHFSEITRSITRHDVAKVIAELVDQQHT 213 (236)
T ss_dssp HHHHH----HSSSEEEEEEECSEECSCC-----------------CSEEEEESSCSCCCCCEEHHHHHHHHHHHTTCGGG
T ss_pred HHHHH----HCCCCEEEEeCCcccCCCC-----------------CCeEEeccCCCcccCcEeHHHHHHHHHHHhcCccc
Confidence 99885 5689999999999999852 1122334455566899999999999999999873
Q ss_pred Cc-cEEecCCCccCHHHHHHHHH
Q 013467 346 VG-PFNLGNPGEFTMLELAQVVQ 367 (442)
Q Consensus 346 ~g-~~~i~~~~~~s~~dl~~~l~ 367 (442)
.| +|+++++ .+++.|+++.+.
T Consensus 214 ~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 214 IGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred cCCeEEEeCC-CcCHHHHHHHhc
Confidence 44 9999887 599999998764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=244.45 Aligned_cols=272 Identities=13% Similarity=0.173 Sum_probs=194.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc--cccCCCceeEEecccccc-----ccC--CCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM--HHFGNPNFELIRHDVVEP-----LLL--EVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vi 185 (442)
.+|+|+|||||||||++|+++|+++|++|++++|.......... ..+...+++++.+|+.+. ++. ++|+||
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 88 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV 88 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence 35689999999999999999999999999999997533222211 112235788999998764 456 899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHH
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGK 263 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (442)
|+|+. .|+.++.+++++|++.| + +||+ | +||.. .+|. .+..+...|+.+|
T Consensus 89 ~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~e~-----~~~~p~~~y~~sK 140 (346)
T 3i6i_A 89 STVGG---------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGHD----VNRA-----DPVEPGLNMYREK 140 (346)
T ss_dssp ECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSSC----TTTC-----CCCTTHHHHHHHH
T ss_pred ECCch---------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCCC----CCcc-----CcCCCcchHHHHH
Confidence 99984 48889999999999999 7 6765 4 44421 2333 4555668899999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
+.+|.++++ .|++++++|||+++|.... .+... ......++.+.++++++..++|++++|+|++++.++.+
T Consensus 141 ~~~e~~l~~----~g~~~tivrpg~~~g~~~~----~~~~~-~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~ 211 (346)
T 3i6i_A 141 RRVRQLVEE----SGIPFTYICCNSIASWPYY----NNIHP-SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDD 211 (346)
T ss_dssp HHHHHHHHH----TTCCBEEEECCEESSCCCS----CC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH----cCCCEEEEEecccccccCc----ccccc-ccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhC
Confidence 999998865 5899999999999996531 11111 11122556788889999999999999999999999998
Q ss_pred CCC--ccEEecC-CCccCHHHHHHHHHHHhCCCCceEeCCCCC-------C-CC---------------CccccCh----
Q 013467 344 EHV--GPFNLGN-PGEFTMLELAQVVQETIDPNAKIEFRPNTE-------D-DP---------------HKRKPDI---- 393 (442)
Q Consensus 344 ~~~--g~~~i~~-~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~-------~-~~---------------~~~~~d~---- 393 (442)
+.. ++|++++ ++.+|+.|+++.+.+.+|.+.++...+... . .+ ....++.
T Consensus 212 ~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~ 291 (346)
T 3i6i_A 212 VRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPE 291 (346)
T ss_dssp GGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSSCCCSTT
T ss_pred ccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCcccccCCCC
Confidence 753 4899886 589999999999999999998876544210 0 00 0000111
Q ss_pred -HHHHH-hhCCCcccCHHHHHHHHHHHHHHHhh
Q 013467 394 -SRAKE-LLGWEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 394 -~k~~~-~LG~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
.++.+ .-+++++ +++|.|+++++|++.+..
T Consensus 292 ~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~ 323 (346)
T 3i6i_A 292 DVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQP 323 (346)
T ss_dssp EEEHHHHSTTCCCC-CHHHHHHHHHCC------
T ss_pred cccHHHhCCCCCcC-cHHHHHHHHHHHhhcccc
Confidence 11222 3467776 999999999999987653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=230.03 Aligned_cols=249 Identities=17% Similarity=0.235 Sum_probs=181.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~ 190 (442)
|+|+|||||||||++++++|+++ |++|++++|+...... +...+++++.+|+.+. ++.++|+|||+|+.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~-----~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD-----DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG-----GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH-----hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 57999999999999999999998 9999999996433211 1235788999998774 57789999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
... ...|+.++.+++++|++.|+ +||++||.+.. +. .+ ..+...+..+|..
T Consensus 76 ~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~---------~~-----~~----~~~~~~~~~~e~~ 127 (289)
T 3e48_A 76 IHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYADQ---------HN-----NP----FHMSPYFGYASRL 127 (289)
T ss_dssp CCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCCS---------TT-----CC----STTHHHHHHHHHH
T ss_pred Ccc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCCC---------CC-----CC----CccchhHHHHHHH
Confidence 322 13589999999999999997 99999995421 11 11 1122223344444
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c-
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G- 347 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g- 347 (442)
+ ++.|++++++||++++|+. ..++.....+. ...++.++..++|++++|+|++++.++.++.. |
T Consensus 128 ~----~~~g~~~~ilrp~~~~~~~---------~~~~~~~~~~~-~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~ 193 (289)
T 3e48_A 128 L----STSGIDYTYVRMAMYMDPL---------KPYLPELMNMH-KLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGK 193 (289)
T ss_dssp H----HHHCCEEEEEEECEESTTH---------HHHHHHHHHHT-EECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTC
T ss_pred H----HHcCCCEEEEecccccccc---------HHHHHHHHHCC-CEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCc
Confidence 3 4568999999999999963 22333333332 23356678899999999999999999998763 4
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC-------C-CC-------------CCccccChHHHHHhhCCCccc
Q 013467 348 PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT-------E-DD-------------PHKRKPDISRAKELLGWEPKV 406 (442)
Q Consensus 348 ~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~-------~-~~-------------~~~~~~d~~k~~~~LG~~p~~ 406 (442)
+||++ ++.+|+.|+++.+.+.+|.+..+...+.. . .. ......+...+++.+|+.|+
T Consensus 194 ~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~- 271 (289)
T 3e48_A 194 RYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVNDQPQ- 271 (289)
T ss_dssp EEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCC-
T ss_pred eEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHhCCCCC-
Confidence 99999 99999999999999999998765433321 0 00 01123456678888999998
Q ss_pred CHHHHHHH
Q 013467 407 SLRKGLPK 414 (442)
Q Consensus 407 ~l~e~l~~ 414 (442)
++++.+++
T Consensus 272 ~~~~~~~~ 279 (289)
T 3e48_A 272 TLQSFLQE 279 (289)
T ss_dssp CHHHHHHC
T ss_pred CHHHHHHH
Confidence 88775543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=218.13 Aligned_cols=212 Identities=15% Similarity=0.200 Sum_probs=138.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc---ccCCCCEEEEecccCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP---LLLEVDQIYHLACPASP 193 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~d~Vih~A~~~~~ 193 (442)
|+|+|||||||||++++++|+++|++|++++|+.... .. +. .+++++.+|+.+. .+.++|+|||+||....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~----~~-~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 74 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKI----TQ-TH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPD 74 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHH----HH-HC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhh----hh-cc-CCCeEEeccccChhhhhhcCCCEEEECCcCCcc
Confidence 5899999999999999999999999999999963221 11 11 5788999998875 56789999999986321
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccc-cCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVY-GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy-~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (442)
....|+.++.+++++|++.++ +||++||..+| +.....+..|+ .+..+.+.|+.+|..+|.+ .
T Consensus 75 ---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~k~~~e~~-~ 139 (221)
T 3ew7_A 75 ---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYYPTARAQAKQL-E 139 (221)
T ss_dssp ---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHHHHHHHH-H
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHHHHHHHHHHHH-H
Confidence 135799999999999999976 99999998755 44333344444 3455567899999999986 3
Q ss_pred HHHh-hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c-c
Q 013467 272 DYHR-GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G-P 348 (442)
Q Consensus 272 ~~~~-~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g-~ 348 (442)
.+.+ ..|++++++||+++||++... . .+ ...+..+...+++ .++++++|+|++++.+++++.. | .
T Consensus 140 ~~~~~~~gi~~~ivrp~~v~g~~~~~--~----~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~~g~~ 207 (221)
T 3ew7_A 140 HLKSHQAEFSWTYISPSAMFEPGERT--G----DY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIERPNHLNEH 207 (221)
T ss_dssp HHHTTTTTSCEEEEECSSCCCCC---------------------------------CCCHHHHHHHHHHHHHSCSCTTSE
T ss_pred HHHhhccCccEEEEeCcceecCCCcc--C----ce---EeccccceecCCC---CceEeHHHHHHHHHHHHhCccccCCE
Confidence 3433 679999999999999984211 1 11 1122333333333 3799999999999999998864 4 9
Q ss_pred EEecCCCccCHHH
Q 013467 349 FNLGNPGEFTMLE 361 (442)
Q Consensus 349 ~~i~~~~~~s~~d 361 (442)
||++++...+..|
T Consensus 208 ~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 208 FTVAGKLEHHHHH 220 (221)
T ss_dssp EECCC--------
T ss_pred EEECCCCcccccc
Confidence 9999988777654
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=215.93 Aligned_cols=201 Identities=16% Similarity=0.217 Sum_probs=159.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-c-----ccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-P-----LLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-~-----~~~~~d~Vih~A~~ 190 (442)
|+|+|||||||||++++++|+++|++|++++|....... ..++.++.+|+.+ . .+.++|+|||+||.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-------YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-------CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-------cCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 589999999999999999999999999999996432211 1578999999988 3 56789999999986
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
... ..+++|+.++.+++++|++.++ +||++||.++++.. +..| .+..+.+.|+.+|+.+|.+
T Consensus 74 ~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y~~sK~~~e~~ 136 (219)
T 3dqp_A 74 GGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDYYIAKHFADLY 136 (219)
T ss_dssp TTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHHHHHHHHHHHH
T ss_pred CCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHHHHHHHHHHHH
Confidence 432 2456899999999999999997 99999998776431 2222 1233457899999999999
Q ss_pred HHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c-
Q 013467 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G- 347 (442)
Q Consensus 270 v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g- 347 (442)
++ +..|++++++||+++||+... + .+. . +...+++++++|+|++++.+++++.. |
T Consensus 137 ~~---~~~~i~~~ilrp~~v~g~~~~---~--------------~~~-~--~~~~~~~i~~~Dva~~i~~~l~~~~~~g~ 193 (219)
T 3dqp_A 137 LT---KETNLDYTIIQPGALTEEEAT---G--------------LID-I--NDEVSASNTIGDVADTIKELVMTDHSIGK 193 (219)
T ss_dssp HH---HSCCCEEEEEEECSEECSCCC---S--------------EEE-E--SSSCCCCEEHHHHHHHHHHHHTCGGGTTE
T ss_pred HH---hccCCcEEEEeCceEecCCCC---C--------------ccc-c--CCCcCCcccHHHHHHHHHHHHhCccccCc
Confidence 86 456899999999999998531 1 111 1 25678999999999999999998753 4
Q ss_pred cEEecCCCccCHHHHHHH
Q 013467 348 PFNLGNPGEFTMLELAQV 365 (442)
Q Consensus 348 ~~~i~~~~~~s~~dl~~~ 365 (442)
+||+++++ .++.|+++.
T Consensus 194 ~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 194 VISMHNGK-TAIKEALES 210 (219)
T ss_dssp EEEEEECS-EEHHHHHHT
T ss_pred EEEeCCCC-ccHHHHHHH
Confidence 99998774 899988764
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=227.78 Aligned_cols=261 Identities=17% Similarity=0.120 Sum_probs=183.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
+|+|+||||||+||++++++|+++| ++|++++|+...... ..+...+++++.+|+.+. ++.++|+|||+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~---~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA---KELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH---HHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH---HHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 4689999999999999999999999 999999996543211 111124678888998764 5678999999997
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
.... ...+.|+.++.+++++|++.|+ +||++|+.++|+... . .+...|+.+|..+|.
T Consensus 82 ~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~------~--------~~~~~y~~sK~~~e~ 139 (299)
T 2wm3_A 82 YWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA------G--------RLAAAHFDGKGEVEE 139 (299)
T ss_dssp HHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT------T--------SCCCHHHHHHHHHHH
T ss_pred CCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC------C--------cccCchhhHHHHHHH
Confidence 4210 0135788999999999999997 999988888775311 1 123679999999999
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHH-cCCCcE-EecCCceeEeccCHHHHHHHHHHHHcCCC-
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL-RKEPLT-VYGDGKQTRSFQFVSDLVEGLMRLMEGEH- 345 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~v~v~Dva~ai~~~l~~~~- 345 (442)
++++ .|++++++||+++||+... .++.... .+.... .++.++..++|++++|+|++++.++.++.
T Consensus 140 ~~~~----~gi~~~ilrp~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~ 207 (299)
T 2wm3_A 140 YFRD----IGVPMTSVRLPCYFENLLS--------HFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEK 207 (299)
T ss_dssp HHHH----HTCCEEEEECCEEGGGGGT--------TTCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHH
T ss_pred HHHH----CCCCEEEEeecHHhhhchh--------hcCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhh
Confidence 8865 4899999999999996421 1111111 222212 23346678899999999999999998752
Q ss_pred -C-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCC----CCC------------ccccChHHHHHhhCCCcccC
Q 013467 346 -V-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED----DPH------------KRKPDISRAKELLGWEPKVS 407 (442)
Q Consensus 346 -~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~----~~~------------~~~~d~~k~~~~LG~~p~~~ 407 (442)
. ..|++++ +.+|+.|+++.+.+.+|.+..+...+.... .+. .-........+.+|..|+ +
T Consensus 208 ~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 285 (299)
T 2wm3_A 208 YVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDRDIELTLRLNPKAL-T 285 (299)
T ss_dssp HTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCCCCCHHHHHHHCTTCC-C
T ss_pred hCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC-C
Confidence 3 4899986 689999999999999998865543332110 000 001112334556777776 7
Q ss_pred HHHHHHHH
Q 013467 408 LRKGLPKM 415 (442)
Q Consensus 408 l~e~l~~~ 415 (442)
+++.+++.
T Consensus 286 ~~~~~~~~ 293 (299)
T 2wm3_A 286 LDQWLEQH 293 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77776654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=211.34 Aligned_cols=214 Identities=13% Similarity=0.055 Sum_probs=153.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc---ccCCCCEEEEecccCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP---LLLEVDQIYHLACPASP 193 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~d~Vih~A~~~~~ 193 (442)
|+|+|||||||||++++++|+++|++|++++|+... .. .+...+++++.+|+.+. .+.++|+|||+||..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~----~~-~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~-- 73 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK----AA-DRLGATVATLVKEPLVLTEADLDSVDAVVDALSVP-- 73 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HH-HHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCC--
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc----cc-cccCCCceEEecccccccHhhcccCCEEEECCccC--
Confidence 589999999999999999999999999999985322 11 11235788999998875 567899999999864
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc-CCCCC--CCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG-DPLQH--PQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~-~~~~~--~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
+... ....|+.++.+++++|++.|.+||++||.+.+. ..... +.+|. ....+.+.|+.+|..+|. +
T Consensus 74 --~~~~---~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~sK~~~e~-~ 142 (224)
T 3h2s_A 74 --WGSG---RGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFP-----ESAASQPWYDGALYQYYE-Y 142 (224)
T ss_dssp --TTSS---CTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCC-----GGGGGSTTHHHHHHHHHH-H
T ss_pred --CCcc---hhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCC-----CCCccchhhHHHHHHHHH-H
Confidence 1111 235899999999999999988999999986554 32222 22222 222335789999999994 4
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c-c
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G-P 348 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g-~ 348 (442)
..+.++.+++++++||+++||++... . +. .....+. .+....++++++|+|++++.+++++.. | +
T Consensus 143 ~~~~~~~~i~~~ivrp~~v~g~~~~~--~-~~-------~~~~~~~---~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~ 209 (224)
T 3h2s_A 143 QFLQMNANVNWIGISPSEAFPSGPAT--S-YV-------AGKDTLL---VGEDGQSHITTGNMALAILDQLEHPTAIRDR 209 (224)
T ss_dssp HHHTTCTTSCEEEEEECSBCCCCCCC--C-EE-------EESSBCC---CCTTSCCBCCHHHHHHHHHHHHHSCCCTTSE
T ss_pred HHHHhcCCCcEEEEcCccccCCCccc--C-ce-------ecccccc---cCCCCCceEeHHHHHHHHHHHhcCccccCCE
Confidence 55656779999999999999985311 1 10 1111121 123456899999999999999998864 4 9
Q ss_pred EEecCCCccCHHH
Q 013467 349 FNLGNPGEFTMLE 361 (442)
Q Consensus 349 ~~i~~~~~~s~~d 361 (442)
|++++.+...+.|
T Consensus 210 ~~~~~~~~~~~~~ 222 (224)
T 3h2s_A 210 IVVRDADLEHHHH 222 (224)
T ss_dssp EEEEECC------
T ss_pred EEEecCcchhccc
Confidence 9999877665543
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=210.98 Aligned_cols=202 Identities=20% Similarity=0.176 Sum_probs=154.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccccccc-cCC--CCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-LLE--VDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~--~d~Vih~A~ 189 (442)
.+|+|+||||+|+||++++++|+++|+ +|++++|+... ...++.++.+|+.+.. +.. +|+|||+||
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~ 74 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG 74 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECee
Confidence 357999999999999999999999998 99999986543 1246777788876542 111 899999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
... ....++...+++|+.++.+++++|++.++ +||++||..+|+. +.+.|+.+|..+|.
T Consensus 75 ~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y~~sK~~~e~ 134 (215)
T 2a35_A 75 TTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQ 134 (215)
T ss_dssp CCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHH
T ss_pred ecc--ccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHHHHHHHHHHH
Confidence 532 12356778899999999999999999997 8999999998742 12679999999999
Q ss_pred HHHHHHhhcCCc-EEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCc
Q 013467 269 LTMDYHRGAGVE-VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 269 ~v~~~~~~~g~~-~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g 347 (442)
++++ .|++ ++++||+++||+... ..++..+ . +...+. +++ .+++++++|+|++++.+++++..+
T Consensus 135 ~~~~----~~~~~~~~vrp~~v~g~~~~---~~~~~~~----~-~~~~~~-~~~--~~~~i~~~Dva~~~~~~~~~~~~~ 199 (215)
T 2a35_A 135 ALQE----QGWPQLTIARPSLLFGPREE---FRLAEIL----A-APIARI-LPG--KYHGIEACDLARALWRLALEEGKG 199 (215)
T ss_dssp HHTT----SCCSEEEEEECCSEESTTSC---EEGGGGT----T-CCCC-----C--HHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred HHHH----cCCCeEEEEeCceeeCCCCc---chHHHHH----H-Hhhhhc-cCC--CcCcEeHHHHHHHHHHHHhcCCCC
Confidence 8854 5899 999999999999742 2222221 1 222222 222 568999999999999999998877
Q ss_pred cEEecCCCccCHH
Q 013467 348 PFNLGNPGEFTML 360 (442)
Q Consensus 348 ~~~i~~~~~~s~~ 360 (442)
+||+++++.+++.
T Consensus 200 ~~~i~~~~~~~~~ 212 (215)
T 2a35_A 200 VRFVESDELRKLG 212 (215)
T ss_dssp EEEEEHHHHHHHH
T ss_pred ceEEcHHHHHHhh
Confidence 9999987665543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=211.09 Aligned_cols=225 Identities=15% Similarity=0.127 Sum_probs=163.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
++|+|+||||+||||++++++|+++ |++|++++|+... ... + ..++.++.+|+.+. .+.++|+|||+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~----~~~-~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG----KEK-I-GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH----HHH-T-TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc----hhh-c-CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 4679999999999999999999999 8999999985321 111 1 24567888888764 46789999999
Q ss_pred cccCCCCc-------------ccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPASPVH-------------YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 188 A~~~~~~~-------------~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
||...... ........+++|+.++.+++++|++.++ +||++||.+++... .+. .+.
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~--~~~--------~~~ 146 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPD--HPL--------NKL 146 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTT--CGG--------GGG
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCC--Ccc--------ccc
Confidence 98643211 1112235678999999999999999987 99999998875211 000 111
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
....|+.+|+.+|.++++ .|++++++||+++||+.... ... ..+....++++ ..++++++|+
T Consensus 147 -~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~--~~~--------~~~~~~~~~~~---~~~~~~~~Dv 208 (253)
T 1xq6_A 147 -GNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGV--REL--------LVGKDDELLQT---DTKTVPRADV 208 (253)
T ss_dssp -GGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSS--SCE--------EEESTTGGGGS---SCCEEEHHHH
T ss_pred -cchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcch--hhh--------hccCCcCCcCC---CCcEEcHHHH
Confidence 114588899999998753 68999999999999986321 000 01111111111 2468999999
Q ss_pred HHHHHHHHcCCCC-c-cEEecCCC---ccCHHHHHHHHHHHhCCC
Q 013467 334 VEGLMRLMEGEHV-G-PFNLGNPG---EFTMLELAQVVQETIDPN 373 (442)
Q Consensus 334 a~ai~~~l~~~~~-g-~~~i~~~~---~~s~~dl~~~l~~~~g~~ 373 (442)
|++++.+++++.. | +||+++++ .+++.|+++.+.+.+|++
T Consensus 209 a~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~~ 253 (253)
T 1xq6_A 209 AEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253 (253)
T ss_dssp HHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCCC
T ss_pred HHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCCC
Confidence 9999999988653 4 89999864 599999999999998753
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=221.00 Aligned_cols=228 Identities=15% Similarity=0.149 Sum_probs=167.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecc-cccc-----ccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD-VVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D-~~~~-----~~~~~d~Vih~A~ 189 (442)
+|+|+|||||||||++++++|+++|++|++++|+...... .......+++++.+| +.+. ++.++|+|||+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~--~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH--HHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 5689999999999999999999999999999996543210 111122468888999 7654 4678999999986
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCc--cccCCCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSE--VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~--vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
... . +.|..+ .+++++|++.| + +|||+||.. .|+. .+...|+.+|+.
T Consensus 83 ~~~-----~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-----------------~~~~~y~~sK~~ 133 (352)
T 1xgk_A 83 SQA-----G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-----------------WPAVPMWAPKFT 133 (352)
T ss_dssp STT-----S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-----------------CCCCTTTHHHHH
T ss_pred CCC-----c------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-----------------CCCccHHHHHHH
Confidence 421 0 247776 99999999999 7 999999975 3321 122679999999
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCc--EEecCCceeEeccCH-HHHHHHHHHHHc
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL--TVYGDGKQTRSFQFV-SDLVEGLMRLME 342 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~v-~Dva~ai~~~l~ 342 (442)
+|.++++ .|++++++||+ +||++.......+ +.......+.+ .+++++++.++++|+ +|+|++++.+++
T Consensus 134 ~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~ 205 (352)
T 1xgk_A 134 VENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPL---FQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 205 (352)
T ss_dssp HHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSS---CBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCEEEEecc-eecCCchhccccc---ccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHh
Confidence 9999865 48999999987 6887642110000 00000122232 335667788999999 899999999998
Q ss_pred CC----CCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCC
Q 013467 343 GE----HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383 (442)
Q Consensus 343 ~~----~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~ 383 (442)
++ ..++||+++ +.+|+.|+++.+.+.+|.+..+...|...
T Consensus 206 ~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~ 249 (352)
T 1xgk_A 206 DGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVE 249 (352)
T ss_dssp HCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCC
T ss_pred CCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHH
Confidence 75 245999995 67999999999999999987776665443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=216.78 Aligned_cols=229 Identities=17% Similarity=0.228 Sum_probs=166.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC-cccc--ccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR-KENV--MHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~-~~~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
+|+|+|||||||||++++++|+++|++|++++|+.... .+.. ...+...+++++.+|+.+. ++.++|+|||+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 56899999999999999999999999999999975432 1111 0111235688888988764 56789999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CChhHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKR 264 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK~ 264 (442)
++.... ..|+.++.+++++|+++| + +||+ | +||...... + .+..+ ...| .+|.
T Consensus 84 a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~--~------~~~~p~~~~y-~sK~ 139 (313)
T 1qyd_A 84 LAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM--E------HALQPGSITF-IDKR 139 (313)
T ss_dssp CCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC--C------CCCSSTTHHH-HHHH
T ss_pred Cccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc--c------cCCCCCcchH-HHHH
Confidence 985432 137788999999999998 7 7875 3 454322111 1 12222 3568 9999
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHH----HHcCCCcEEecCCceeEeccCHHHHHHHHHHH
Q 013467 265 TAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ----ALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 265 ~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
.+|.+++ +.|++++++||+.++|+... .+... ...++.+.++++++..++|++++|+|++++.+
T Consensus 140 ~~e~~~~----~~g~~~~ilrp~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~ 207 (313)
T 1qyd_A 140 KVRRAIE----AASIPYTYVSSNMFAGYFAG--------SLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKS 207 (313)
T ss_dssp HHHHHHH----HTTCCBCEEECCEEHHHHTT--------TSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCCeEEEEeceecccccc--------ccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHH
Confidence 9998885 45899999999998874211 11100 12233445667888899999999999999999
Q ss_pred HcCCCC--ccEEecCC-CccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 341 MEGEHV--GPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 341 l~~~~~--g~~~i~~~-~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
+.++.. +.|+++++ +.+|+.|+++.+.+.+|.+..+...+
T Consensus 208 l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 208 IDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp TTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 988742 47888874 78999999999999999887665443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=210.86 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=164.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
++|+||||||+||++++++|+++|++|++++|+.......+ ..+...+++++.+|+.+. ++.++|+|||+++..
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~ 90 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLL-DEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP 90 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHH-HHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHH-HHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence 48999999999999999999999999999999754222111 111224678899998764 567899999999742
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CChhHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAET 268 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK~~~E~ 268 (442)
++.++.+++++|++.| + +||+ | +||... +|. .+..+ ...| .+|..+|.
T Consensus 91 ---------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~sK~~~e~ 141 (318)
T 2r6j_A 91 ---------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVEE----DRI-----NALPPFEALI-ERKRMIRR 141 (318)
T ss_dssp ---------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSCT----TTC-----CCCHHHHHHH-HHHHHHHH
T ss_pred ---------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccCc----ccc-----cCCCCcchhH-HHHHHHHH
Confidence 2456789999999998 7 7774 4 344221 111 12122 2468 99999998
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC--C
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH--V 346 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~ 346 (442)
++++ .+++++++||+.+++. ++..+......++.+.++++++..++|++++|++++++.++.++. .
T Consensus 142 ~~~~----~~~~~~~lr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~ 209 (318)
T 2r6j_A 142 AIEE----ANIPYTYVSANCFASY--------FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALN 209 (318)
T ss_dssp HHHH----TTCCBEEEECCEEHHH--------HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGTT
T ss_pred HHHh----cCCCeEEEEcceehhh--------hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccccC
Confidence 8754 5899999999887753 223333222345566777888889999999999999999998764 2
Q ss_pred ccEEecC-CCccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 347 GPFNLGN-PGEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 347 g~~~i~~-~~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
+.|++++ ++.+|+.|+++.+.+.+|.+..+...+
T Consensus 210 ~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 210 RVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp EEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred eEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 4788876 478999999999999999988776544
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=210.48 Aligned_cols=232 Identities=16% Similarity=0.093 Sum_probs=163.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++|+|+||||+|+||++++++|+++|++|++++|+.....+ .... ...++.++.+|+.+.. +.++|
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 81 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD-LVAA-YPDRAEAISLDVTDGERIDVVAADVLARYGRVD 81 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH-HHHH-CTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHh-ccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCC
Confidence 46799999999999999999999999999999986433222 1111 1347888999987752 12699
Q ss_pred EEEEecccCCCCcc----cCChhHHHHHhHHH----HHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHY----KFNPVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 183 ~Vih~A~~~~~~~~----~~~~~~~~~~nv~g----t~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+||||||....... .+++...+++|+.| ++.+++.+++.+. +||++||...+. +.
T Consensus 82 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~ 145 (281)
T 3m1a_A 82 VLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------------SF 145 (281)
T ss_dssp EEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------CC
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------------CC
Confidence 99999997543221 23456789999999 5555555567776 999999987652 33
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC-------CCchHHHHHHHHHcCCCcEEecCCce
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.+...|+.+|.+.|.+++.++.+ .|+++.+++||++.++..... ...+...... ...+ .....
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~ 218 (281)
T 3m1a_A 146 AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGP----TRQL---VQGSD 218 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHH----HHHH---HHC--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHH----HHHH---Hhhcc
Confidence 34578999999999999998877 699999999999988753211 1111111111 0000 01123
Q ss_pred eEeccCHHHHHHHHHHHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETID 371 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g 371 (442)
..++.+++|+|++++.+++++..+ .|+++++....+.+....+.+.++
T Consensus 219 ~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 219 GSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp ---CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 346788999999999999988765 899988777777777777766654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-24 Score=197.51 Aligned_cols=200 Identities=15% Similarity=0.058 Sum_probs=149.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
++|+|+||||+|+||++++++|+++|+ +|++++|+........ ..++.++.+|+.+. .+.++|+||||
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 91 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGFCC 91 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence 457999999999999999999999999 9999999654322111 13567888888664 45689999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
||.... ...+...+++|+.++.++++++++.++ +||++||.++|+. +...|+.+|+..
T Consensus 92 ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~~Y~~sK~~~ 150 (242)
T 2bka_A 92 LGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKGEV 150 (242)
T ss_dssp CCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHH
T ss_pred CCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC------------------CcchHHHHHHHH
Confidence 985321 123567889999999999999999987 9999999988742 125799999999
Q ss_pred HHHHHHHHhhcCC-cEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 267 ETLTMDYHRGAGV-EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 267 E~~v~~~~~~~g~-~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
|.+++. .++ +++++|||++||+... ......+........+. .++ ...+++++|+|++++.++.++.
T Consensus 151 e~~~~~----~~~~~~~~vrpg~v~~~~~~---~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~dva~~~~~~~~~~~ 218 (242)
T 2bka_A 151 EAKVEE----LKFDRYSVFRPGVLLCDRQE---SRPGEWLVRKFFGSLPD-SWA----SGHSVPVVTVVRAMLNNVVRPR 218 (242)
T ss_dssp HHHHHT----TCCSEEEEEECCEEECTTGG---GSHHHHHHHHHHCSCCT-TGG----GGTEEEHHHHHHHHHHHHTSCC
T ss_pred HHHHHh----cCCCCeEEEcCceecCCCCC---CcHHHHHHHHhhcccCc-ccc----CCcccCHHHHHHHHHHHHhCcc
Confidence 998855 467 5999999999998642 12233333333332221 111 2358999999999999999887
Q ss_pred C-ccEEec
Q 013467 346 V-GPFNLG 352 (442)
Q Consensus 346 ~-g~~~i~ 352 (442)
. +.+++.
T Consensus 219 ~~~~~~~~ 226 (242)
T 2bka_A 219 DKQMELLE 226 (242)
T ss_dssp CSSEEEEE
T ss_pred ccCeeEee
Confidence 6 466554
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=198.75 Aligned_cols=235 Identities=16% Similarity=0.183 Sum_probs=168.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccc------------c
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~ 178 (442)
...++++|+||||+|+||++++++|+++|++|++++|...... .....+. ..++.++.+|+.+.. +
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ-KVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHH-HHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3456789999999999999999999999999999998532211 1111111 126888999987652 1
Q ss_pred CCCCEEEEecccCCCC--cc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV--HY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~--~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|+||||||..... .. .+.+...+++|+.++.++++++.. .+. +||++||...|....
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 161 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------- 161 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT---------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC---------
Confidence 2799999999965321 11 123567899999999999998865 355 999999998874311
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.....|+.+|.+.|.+++.++.+ .|++++++|||+++++........ ...+...+....+ ...
T Consensus 162 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~-------~~~ 227 (278)
T 2bgk_A 162 ------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV-DSSRVEELAHQAA-------NLK 227 (278)
T ss_dssp ------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC-CHHHHHHHHHHTC-------SSC
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhccc-chhHHHHhhhccc-------ccc
Confidence 12367999999999999998765 589999999999999864211111 1122222222111 122
Q ss_pred EeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCccCHHHHHHHHHHHh
Q 013467 325 RSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGEFTMLELAQVVQETI 370 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~s~~dl~~~l~~~~ 370 (442)
..+++++|+|++++.++..+ ..| .|++.+|..+++.|+++.+.+.+
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 228 GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred cccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 35889999999999999653 235 89999999999999999886643
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=186.60 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=144.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecccC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLACPA 191 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~~~ 191 (442)
|+|+||||||+||++++++|+++|++|++++|+...... ....++.++.+|+.+. .+.++|+|||+|+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-----EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-----SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc-----ccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 689999999999999999999999999999996432211 1135678889998764 467899999999864
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLT 270 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v 270 (442)
... ++ .++|+.++.+++++|++.++ +||++||.++|+.....+ . +...|+.+|..+|.++
T Consensus 79 ~~~----~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-----------~-~~~~y~~~K~~~e~~~ 139 (206)
T 1hdo_A 79 NDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP-----------P-RLQAVTDDHIRMHKVL 139 (206)
T ss_dssp TCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSC-----------G-GGHHHHHHHHHHHHHH
T ss_pred CCC----Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccccc-----------c-cchhHHHHHHHHHHHH
Confidence 431 11 14899999999999999987 999999999986532211 0 3468999999999988
Q ss_pred HHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c-c
Q 013467 271 MDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G-P 348 (442)
Q Consensus 271 ~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g-~ 348 (442)
+ +.+++++++||+++ +++.. ...+ .....+. ...++++++|+|++++.+++++.. | .
T Consensus 140 ~----~~~i~~~~lrp~~~-~~~~~--~~~~-------------~~~~~~~-~~~~~i~~~Dva~~~~~~~~~~~~~g~~ 198 (206)
T 1hdo_A 140 R----ESGLKYVAVMPPHI-GDQPL--TGAY-------------TVTLDGR-GPSRVISKHDLGHFMLRCLTTDEYDGHS 198 (206)
T ss_dssp H----HTCSEEEEECCSEE-ECCCC--CSCC-------------EEESSSC-SSCSEEEHHHHHHHHHHTTSCSTTTTCE
T ss_pred H----hCCCCEEEEeCCcc-cCCCC--Ccce-------------EecccCC-CCCCccCHHHHHHHHHHHhcCccccccc
Confidence 4 46899999999997 33221 1111 0001110 104899999999999999998753 4 8
Q ss_pred EEecCCC
Q 013467 349 FNLGNPG 355 (442)
Q Consensus 349 ~~i~~~~ 355 (442)
|+++++.
T Consensus 199 ~~i~~g~ 205 (206)
T 1hdo_A 199 TYPSHQY 205 (206)
T ss_dssp EEEECCC
T ss_pred eeeeccc
Confidence 9998763
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=208.31 Aligned_cols=224 Identities=16% Similarity=0.243 Sum_probs=163.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC-CCCc--ccc--ccccCCCceeEEecccccc-----ccCCCCEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF-TGRK--ENV--MHHFGNPNFELIRHDVVEP-----LLLEVDQIY 185 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~-~~~~--~~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vi 185 (442)
||+|+||||||+||++++++|+++|++|++++|+. .... +.. ...+...+++++.+|+.+. ++.++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999999975 1111 111 0111224678899998764 567899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CChhHHH
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEG 262 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~s 262 (442)
|+++... +.++.+++++|+++| + +||+ | +||... +|. .+..+ ...| .+
T Consensus 82 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~s 132 (307)
T 2gas_A 82 CAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRH-----DAVEPVRQVF-EE 132 (307)
T ss_dssp ECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSC-----CCCTTHHHHH-HH
T ss_pred ECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----ccc-----cCCCcchhHH-HH
Confidence 9998521 456789999999998 7 7873 3 344221 121 12222 3578 99
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHH---HHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ---ALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
|..+|.++++ .+++++++||+.++++... .+... ...++.+.++++++..++|++++|+|++++.
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLR--------NLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIR 200 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGG--------GTTCTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeeccccc--------cccccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHH
Confidence 9999988754 5899999999998885321 11110 1133456667788889999999999999999
Q ss_pred HHcCCCC-c-cEEecCC-CccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 340 LMEGEHV-G-PFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 340 ~l~~~~~-g-~~~i~~~-~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
++.++.. + .|+++++ +.+|+.|+++.+.+.+|.+..+...+
T Consensus 201 ~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 201 AANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 9987652 3 7888764 68999999999999999987776543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-25 Score=211.46 Aligned_cols=225 Identities=16% Similarity=0.229 Sum_probs=165.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC-CCCc-ccc--ccccCCCceeEEecccccc-----ccCCCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF-TGRK-ENV--MHHFGNPNFELIRHDVVEP-----LLLEVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~-~~~~-~~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vi 185 (442)
+||+|+||||||+||++++++|+++|++|++++|+. .... +.. ...+...+++++.+|+.+. ++.++|+||
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 357899999999999999999999999999999975 2111 110 0111224688899998764 567899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CChhHHH
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEG 262 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~s 262 (442)
|+++.. ++.++.+++++|++.| + +|| .| +||... +|. .+..+ ...| .+
T Consensus 83 ~~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v-~S---~~g~~~----~~~-----~~~~p~~~~y-~s 133 (321)
T 3c1o_A 83 SALPFP---------------MISSQIHIINAIKAAGNIKRFL-PS---DFGCEE----DRI-----KPLPPFESVL-EK 133 (321)
T ss_dssp ECCCGG---------------GSGGGHHHHHHHHHHCCCCEEE-CS---CCSSCG----GGC-----CCCHHHHHHH-HH
T ss_pred ECCCcc---------------chhhHHHHHHHHHHhCCccEEe-cc---ccccCc----ccc-----ccCCCcchHH-HH
Confidence 999742 1556789999999998 7 787 23 444211 121 12112 3579 99
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHH---HHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 263 KRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVA---QALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
|..+|.++++ .+++++++||+.++++. +..+.. ....++.+..+++++..++|++++|+|++++.
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 201 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAYF--------VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIK 201 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHHH--------HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceecccc--------ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHHH
Confidence 9999988854 57999999999888742 222221 11234567778888899999999999999999
Q ss_pred HHcCCC-Cc-cEEecC-CCccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 340 LMEGEH-VG-PFNLGN-PGEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 340 ~l~~~~-~g-~~~i~~-~~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
++.++. .| .|++++ ++.+|+.|+++.+.+.+|.+..+...+
T Consensus 202 ~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 202 VACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 998865 34 788886 579999999999999999988776544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-25 Score=210.15 Aligned_cols=227 Identities=17% Similarity=0.293 Sum_probs=164.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC--cccc--ccccCCCceeEEecccccc-----ccCCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR--KENV--MHHFGNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~--~~~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
+|+|+|||||||||++++++|+++|++|++++|..... .+.. ...+...+++++.+|+.+. ++.++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 56899999999999999999999999999999975432 1111 1112235788899998764 4568999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC-CChhHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGK 263 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~-~~~Y~~sK 263 (442)
+++.. ++.++.+++++|+++| + +||+ | +||... .|. .+..+ ...| .+|
T Consensus 84 ~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~sK 134 (308)
T 1qyc_A 84 TVGSL---------------QIESQVNIIKAIKEVGTVKRFFP-S---EFGNDV----DNV-----HAVEPAKSVF-EVK 134 (308)
T ss_dssp CCCGG---------------GSGGGHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSC-----CCCTTHHHHH-HHH
T ss_pred CCcch---------------hhhhHHHHHHHHHhcCCCceEee-c---ccccCc----ccc-----ccCCcchhHH-HHH
Confidence 99742 2456789999999998 7 7773 4 344211 121 12222 2468 999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
..+|.++++ .+++++++||+.++|+... .+... ......++.+.++++++..++|++++|+|++++.++++
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~ 205 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGYFLR----SLAQA-GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDD 205 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHHTT----TTTCT-TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSC
T ss_pred HHHHHHHHh----cCCCeEEEEeceecccccc----ccccc-cccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhC
Confidence 999988854 5799999999998874321 00000 00012344567778888999999999999999999987
Q ss_pred CCC--ccEEecCC-CccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 344 EHV--GPFNLGNP-GEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 344 ~~~--g~~~i~~~-~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
+.. +.|+++++ +.+|+.|+++.+.+.+|.+..+...+
T Consensus 206 ~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 206 PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred ccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 642 47888764 78999999999999999987776543
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=204.29 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=149.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc----CCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL----LEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~----~~~d~Vih 186 (442)
||+|+||||+||||++++++|+++|++|++++|....... .+.+|+.+. .+ .++|+|||
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi~ 68 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLVC 68 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEEE
Confidence 4689999999999999999999999999999996432111 134455432 23 37999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc----C-CeEEEeecCccccCCCCCC-CCCCCC-CC--------CC
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQHP-QKETYW-GN--------VN 251 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~----g-~r~i~iSS~~vy~~~~~~~-~~E~~~-~~--------~~ 251 (442)
|||.... ..++...+++|+.++.++++++.+. + .+||++||..+|+.....+ ..|..+ .+ ..
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (255)
T 2dkn_A 69 CAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQ 145 (255)
T ss_dssp CCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccc
Confidence 9996431 3457889999999999999987654 4 4999999999886431111 100000 00 00
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+..+...|+.+|++.|.+++.++++ .|++++++|||+++|+.. ..++.....+.....+. + ...+++
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~--------~~~~~~~~~~~~~~~~~-~-~~~~~~ 215 (255)
T 2dkn_A 146 QGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL--------QASKADPRYGESTRRFV-A-PLGRGS 215 (255)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH--------HHHHHCTTTHHHHHSCC-C-TTSSCB
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh--------hhcccchhhHHHHHHHH-H-HhcCCC
Confidence 0123468999999999999998766 589999999999999742 11111000000000000 1 334789
Q ss_pred CHHHHHHHHHHHHcCC---CCc-cEEecCCCccCHH
Q 013467 329 FVSDLVEGLMRLMEGE---HVG-PFNLGNPGEFTML 360 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~s~~ 360 (442)
+++|+|++++.++.++ ..| .|++.++..+++.
T Consensus 216 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~ 251 (255)
T 2dkn_A 216 EPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMR 251 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHC
T ss_pred CHHHHHHHHHHHhCCCcccceeeEEEecCCeEeeee
Confidence 9999999999999875 235 8999988666554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-23 Score=193.39 Aligned_cols=217 Identities=15% Similarity=0.152 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------C
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------L 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~ 179 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. + .
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 45679999999999999999999999999999998643211 111111 1346788889987642 2 2
Q ss_pred CCCEEEEecccCCCCcc---cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY---KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~---~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|+||||||......+ .+++...+++|+.++.++++++. +.+. +||++||...+.
T Consensus 88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 151 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------- 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------
Confidence 79999999997544322 22356788999999999988874 4555 899999988763
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+..+...|+.+|.+.|.+++.++++. |+++.++|||.++++.... .....+......+.++ ..+.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~~~~---------~~~~ 219 (255)
T 1fmc_A 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS---VITPEIEQKMLQHTPI---------RRLG 219 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT---TCCHHHHHHHHHTCSS---------CSCB
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhh---ccChHHHHHHHhcCCc---------ccCC
Confidence 22234689999999999999987764 8999999999999874211 1112333333333222 3577
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCCccCH
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTM 359 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~ 359 (442)
+++|+|++++.++..+. .| .|++.+|..+|+
T Consensus 220 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 220 QPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred CHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 89999999999997542 35 899999887764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=188.86 Aligned_cols=212 Identities=18% Similarity=0.143 Sum_probs=151.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc---CCCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL---LEVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~---~~~d~Vi 185 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+..... ..... ..+++++.+|+.+. .+ .++|+||
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 81 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV-SLAKE--CPGIEPVCVDLGDWDATEKALGGIGPVDLLV 81 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHh--ccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence 45679999999999999999999999999999998642211 11111 13566778888764 22 2589999
Q ss_pred EecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc----C-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 186 h~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~----g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||||....... .+++...+++|+.++.++++++... + . +||++||...|.. ...
T Consensus 82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~~ 145 (244)
T 1cyd_A 82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT----------------FPN 145 (244)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC----------------CTT
T ss_pred ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC----------------CCC
Confidence 99997543222 1235678999999999998877543 4 4 8999999887632 122
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|++.|.+++.++++ .|+++.++|||+++++...... ....++..+..+. ...++++++|
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~d 214 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS--ADPEFARKLKERH---------PLRKFAEVED 214 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT--CCHHHHHHHHHHS---------TTSSCBCHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc--cCHHHHHHHHhcC---------CccCCCCHHH
Confidence 367999999999999998776 5899999999999987421000 0122223333322 2247899999
Q ss_pred HHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 333 LVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 333 va~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+|++++.++.++. .| .+++.+|.
T Consensus 215 va~~~~~l~~~~~~~~~G~~~~v~gG~ 241 (244)
T 1cyd_A 215 VVNSILFLLSDRSASTSGGGILVDAGY 241 (244)
T ss_dssp HHHHHHHHHSGGGTTCCSSEEEESTTG
T ss_pred HHHHHHHHhCchhhcccCCEEEECCCc
Confidence 9999999997653 35 77777664
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=192.93 Aligned_cols=236 Identities=17% Similarity=0.103 Sum_probs=167.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccc----------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPL---------- 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~---------- 177 (442)
+..++++|+||||+|+||++++++|+++|++|++++|+.....+...... ....+.++.+|+.+..
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999986432221111111 1126788999997752
Q ss_pred --cCCCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCC
Q 013467 178 --LLEVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 178 --~~~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+.++|+||||||.... .. ..++++..+++|+.++.++++++.. .+. +||++||...+.
T Consensus 87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 156 (281)
T 3svt_A 87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN---------- 156 (281)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC----------
Confidence 2368999999996322 11 1223677899999999999987743 344 899999988762
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++....... ...+........+
T Consensus 157 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~p-------- 220 (281)
T 3svt_A 157 ------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITE--SAELSSDYAMCTP-------- 220 (281)
T ss_dssp ------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--CHHHHHHHHHHCS--------
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhccc--CHHHHHHHHhcCC--------
Confidence 22334789999999999999988765 6999999999999875310000 0112222222221
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC-HHHHHHHHHHHhCCCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT-MLELAQVVQETIDPNA 374 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s-~~dl~~~l~~~~g~~~ 374 (442)
...+.+++|+|+++++++.... .| .+++.+|..++ ..++.+.+.+.++.+.
T Consensus 221 -~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 221 -LPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp -SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred -CCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 2356689999999999997643 35 89998887776 7788888888887653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-23 Score=194.37 Aligned_cols=222 Identities=18% Similarity=0.151 Sum_probs=155.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...+.++.+|+.+.. +.++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQ-AAAEI-GPAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999999999985432221 11121 246788899987652 2279
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||....... .++++..+++|+.++.++++++.. .+ .++|++||...+.
T Consensus 84 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (259)
T 4e6p_A 84 DILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR---------------- 147 (259)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc----------------
Confidence 999999997544322 234677889999999999988743 23 3899999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC---CCcEEecCCceeE
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK---EPLTVYGDGKQTR 325 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++... ....++...... .....+.+.....
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 222 (259)
T 4e6p_A 148 GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWD-----GVDALFARYENRPRGEKKRLVGEAVPFG 222 (259)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHH-----HHHHHHHHHHTCCTTHHHHHHHHHSTTS
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhh-----hhhhhhhhhccCChHHHHHHHhccCCCC
Confidence 22234689999999999999988764 899999999999997531 111111111111 0011112223345
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
.+.+++|+|+++++++.... .| .|++.+|..+|
T Consensus 223 r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 223 RMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp SCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred CCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 78899999999999886543 35 89998886553
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=194.36 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=163.9
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC---CCceeEEeccccccc-----------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG---NPNFELIRHDVVEPL----------- 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~----------- 177 (442)
...++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+. ..++.++.+|+.+..
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKA-TAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999986422111 111110 346888999987652
Q ss_pred -cCCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHH-----cCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~-----~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|+||||||...... ..+++...+++|+.++.++++++.. .+. +||++||...+.
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 169 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET----------- 169 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc-----------
Confidence 235799999999654321 1234677899999999999887743 234 899999987653
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCCcEEecCCc
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+..+...|+.+|.+.|.+++.++.+ .|+++.++|||++++++.... .... .....+....+
T Consensus 170 -----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~--~~~~~~~~~~p-------- 234 (302)
T 1w6u_A 170 -----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTG--TFEKEMIGRIP-------- 234 (302)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTS--HHHHHHHTTCT--------
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccch--hhHHHHHhcCC--------
Confidence 2223468999999999999998877 699999999999998743211 0110 11112222221
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccCHHHHHHHHHHHhCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTMLELAQVVQETIDP 372 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~~dl~~~l~~~~g~ 372 (442)
...+.+++|+|++++.++..+. .| .|++.+|..+++.++++.+.+..|.
T Consensus 235 -~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 235 -CGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp -TSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred -cCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhccc
Confidence 1247789999999999997542 45 8999998888888888777766553
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=189.07 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=150.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-----CCCceeEEecccccc-----cc-----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-----GNPNFELIRHDVVEP-----LL----- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~-----~~----- 178 (442)
.++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+. .+
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE-ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999998632211 111111 123578888998764 12
Q ss_pred --CCCCEEEEecccCCCCc--------ccCChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCcc-ccCCCCCCCC
Q 013467 179 --LEVDQIYHLACPASPVH--------YKFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEV-YGDPLQHPQK 243 (442)
Q Consensus 179 --~~~d~Vih~A~~~~~~~--------~~~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~v-y~~~~~~~~~ 243 (442)
.++|+||||||...... ..++++..+++|+.++.++++++... +.++|++||... +.
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~-------- 154 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH-------- 154 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS--------
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccccccc--------
Confidence 27999999999754321 22346678999999999999887543 569999999876 42
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC---CCch--HHHHHHHHHcCCCc
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID---DGRV--VSNFVAQALRKEPL 315 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~---~~~~--~~~~~~~~~~~~~~ 315 (442)
+......|+.+|.+.+.+++.++.+ .|+++++|+||+++++..... .... +...........+
T Consensus 155 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 225 (278)
T 1spx_A 155 --------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP- 225 (278)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT-
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC-
Confidence 2223367999999999999988765 589999999999998753210 0000 0000111111111
Q ss_pred EEecCCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCCccCHHHHHHHHHHHh
Q 013467 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPGEFTMLELAQVVQETI 370 (442)
Q Consensus 316 ~~~~~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~~~s~~dl~~~l~~~~ 370 (442)
...+.+++|+|+++++++..+ ..| .+++.+|..+++.++++.+.+++
T Consensus 226 --------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 --------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp --------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred --------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 124788999999999998753 346 88999899999999999988764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=183.32 Aligned_cols=212 Identities=17% Similarity=0.102 Sum_probs=155.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+.. ..+ ..++.++.+|+.+.. +.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA-ASV-GRGAVHHVVDLTNEVSVRALIDFTIDTFGR 85 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHH-HHH-CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HHh-CCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 345779999999999999999999999999999999754332222 222 346788889987751 236
Q ss_pred CCEEEEecccCCCCc------ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH------YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~------~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+|+||||||...... ..+.++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 151 (271)
T 3tzq_B 86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA-------------- 151 (271)
T ss_dssp CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------------
T ss_pred CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC--------------
Confidence 999999999753211 12346778999999999999988 56665 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.++++.... .....+...+....+ ...
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~---------~~r 217 (271)
T 3tzq_B 152 --AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEV---GLPQPIVDIFATHHL---------AGR 217 (271)
T ss_dssp --BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC------CHHHHHHHHTTST---------TSS
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccc---cCCHHHHHHHHhcCC---------CCC
Confidence 3333478999999999999998877 58999999999999986421 111223333333221 124
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+|+++++++.... .| .+++.+|
T Consensus 218 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 218 IGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 6779999999999997653 35 7888777
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=186.82 Aligned_cols=219 Identities=17% Similarity=0.081 Sum_probs=147.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC---------CCceeEEeccccccc-----c-
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG---------NPNFELIRHDVVEPL-----L- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~---------~~~v~~~~~D~~~~~-----~- 178 (442)
+++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+. ..++.++.+|+.+.. +
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQE-TVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH-HHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 345789999999999999999999999999999986432111 111111 145788899987652 1
Q ss_pred ------CCC-CEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHc----C-C-eEEEeecCccccCCCCCC
Q 013467 179 ------LEV-DQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQHP 241 (442)
Q Consensus 179 ------~~~-d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~----g-~-r~i~iSS~~vy~~~~~~~ 241 (442)
.++ |+||||||...... ..+++...+++|+.++.++++++... + . +||++||...+.
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------ 157 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV------ 157 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH------
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc------
Confidence 235 99999999754322 12346778999999999999987543 4 3 899999986542
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEe
Q 013467 242 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 318 (442)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (442)
+..+...|+.+|.+.|.+++.++.+ .|++++++|||+++++... .....+...+..+.
T Consensus 158 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~----- 218 (264)
T 2pd6_A 158 ----------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ----KVPQKVVDKITEMI----- 218 (264)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CTGGGC-----
T ss_pred ----------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchh----hcCHHHHHHHHHhC-----
Confidence 1122367999999999999998776 6999999999999998631 11111111111111
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccCHHHH
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTMLEL 362 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~~dl 362 (442)
....+.+++|+|++++.++..+. .| .+++.+|..++...+
T Consensus 219 ----~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 219 ----PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred ----CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 12357789999999999987542 35 788888876655543
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=180.71 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=137.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc---CCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL---LEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~---~~~d~Vih~A 188 (442)
|+|+||||+|+||++++++|+ +|++|++++|+.. ++.+|+.+. .+ .++|+|||+|
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 589999999999999999999 9999999998532 345565543 22 2489999999
Q ss_pred ccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHH
Q 013467 189 CPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 189 ~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
|........ +.+...+++|+.++.++++++.+. +.+||++||...+. +..+...|+.
T Consensus 67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~ 130 (202)
T 3d7l_A 67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------PIVQGASAAM 130 (202)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------CCTTCHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------CCCccHHHHH
Confidence 965433222 234567889999999999999876 45899999987652 2223468999
Q ss_pred HHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
+|...|.+++.++.+. |+++.++|||+++++.. .+ ++.....++++++|+|++++.
T Consensus 131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~---------~~-------------~~~~~~~~~~~~~dva~~~~~ 188 (202)
T 3d7l_A 131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD---------KL-------------EPFFEGFLPVPAAKVARAFEK 188 (202)
T ss_dssp HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH---------HH-------------GGGSTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh---------hh-------------hhhccccCCCCHHHHHHHHHH
Confidence 9999999999988764 89999999999998631 10 111123578999999999999
Q ss_pred HHcCCCCc-cEEe
Q 013467 340 LMEGEHVG-PFNL 351 (442)
Q Consensus 340 ~l~~~~~g-~~~i 351 (442)
++.+...| .|++
T Consensus 189 ~~~~~~~G~~~~v 201 (202)
T 3d7l_A 189 SVFGAQTGESYQV 201 (202)
T ss_dssp HHHSCCCSCEEEE
T ss_pred hhhccccCceEec
Confidence 88766566 7776
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=181.23 Aligned_cols=212 Identities=17% Similarity=0.097 Sum_probs=155.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++|+++||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. +.+
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999999999875433322222211 2346788899987752 237
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (246)
T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV---------------- 146 (246)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------------
Confidence 9999999997643322 2346678999999999999988 55565 999999977552
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++... .+...+......+.++ ..+.
T Consensus 147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~p~---------~r~~ 213 (246)
T 3osu_A 147 GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTD----ALSDELKEQMLTQIPL---------ARFG 213 (246)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCS----CSCHHHHHHHHTTCTT---------CSCB
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccc----ccCHHHHHHHHhcCCC---------CCCc
Confidence 2223468999999999999998774 4899999999999987542 1223444444444332 3466
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+.+|+|+++++++..+. .| .+++.+|.
T Consensus 214 ~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 214 QDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 78999999999987653 35 88888763
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=182.63 Aligned_cols=220 Identities=11% Similarity=0.067 Sum_probs=153.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC---CCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG---NPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~------------~ 178 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.+.. +
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLH-EAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999999999999998642211 1111110 246788899987752 1
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .++++..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 150 (263)
T 3ai3_A 84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP------------- 150 (263)
T ss_dssp SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC-------------
Confidence 379999999997543222 22466789999999999888764 4555 9999999887632
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCC-------chHHHHHHHHHcCCCcEEec
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDG-------RVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 319 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++....... .....+...+....
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 221 (263)
T 3ai3_A 151 ---LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------ 221 (263)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH------
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC------
Confidence 223367999999999999998876 58999999999999874210000 00011111111110
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
.....+.+++|+|+++++++..+. .| .|++.+|..++
T Consensus 222 --~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 --APIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp --CTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred --CCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 112357899999999999997653 35 88888876654
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=180.10 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=154.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.... ....+.++.+|+.+.. +.+
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 96 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS--------ADPDIHTVAGDISKPETADRIVREGIERFGR 96 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC--------SSTTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc--------ccCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence 35677999999999999999999999999999999864322 1236788999987752 237
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.|+.++++++ ++.+. ++|++||...+.. .
T Consensus 97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------~ 162 (260)
T 3un1_A 97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP--------------M 162 (260)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC--------------B
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC--------------C
Confidence 9999999997654322 2246778899999999999887 45565 9999999876532 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+..+...|+.+|.+.+.+++.++.+. |+++.+|+||+++++... ... ........ ....+.
T Consensus 163 ~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~---~~~----~~~~~~~~---------p~~r~~ 226 (260)
T 3un1_A 163 VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHP---AET----HSTLAGLH---------PVGRMG 226 (260)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSC---GGG----HHHHHTTS---------TTSSCB
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCC---HHH----HHHHhccC---------CCCCCc
Confidence 22234689999999999999998876 899999999999998642 111 11112221 223577
Q ss_pred CHHHHHHHHHHHHcCCC-Cc-cEEecCCCcc
Q 013467 329 FVSDLVEGLMRLMEGEH-VG-PFNLGNPGEF 357 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~ 357 (442)
+++|+|++++++.+... .| .+++.+|...
T Consensus 227 ~~~dva~av~~L~~~~~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 227 EIRDVVDAVLYLEHAGFITGEILHVDGGQNA 257 (260)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHHHhcccCCCCCcEEEECCCeec
Confidence 89999999999965543 45 8999887543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=181.19 Aligned_cols=211 Identities=18% Similarity=0.158 Sum_probs=150.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c---CCCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L---LEVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~---~~~d~Vi 185 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.... +.+.... .+++++.+|+.+.. + .++|+||
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 81 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL-DSLVREC--PGIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHS--TTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHc--CCCCEEEEeCCCHHHHHHHHHHcCCCCEEE
Confidence 4567999999999999999999999999999999853221 1111111 24567788887642 2 3589999
Q ss_pred EecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 186 h~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||||....... .+.++..+++|+.++.++++++.. .+ . +||++||...+. +..+
T Consensus 82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~ 145 (244)
T 3d3w_A 82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVTN 145 (244)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCTT
T ss_pred ECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc----------------CCCC
Confidence 99997543221 123567899999999998887754 34 4 899999987663 2223
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
...|+.+|++.|.+++.++.+ .|+++.+++||.++++.... .... +...+.... ....++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~ 212 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH----KAKTMLNRI---------PLGKFAEV 212 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTT----HHHHHHHTC---------TTCSCBCH
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChH----HHHHHHhhC---------CCCCCcCH
Confidence 468999999999999998776 48999999999999875310 0111 112222221 12368899
Q ss_pred HHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 331 SDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+|+|++++.++.++. .| .|++.+|..
T Consensus 213 ~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 213 EHVVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 999999999997542 35 788887643
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=178.59 Aligned_cols=214 Identities=17% Similarity=0.152 Sum_probs=148.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+.... + ..++.++.+|+.+.. +.++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 82 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE-L-GAAVRFRNADVTNEADATAALAFAKQEFGHV 82 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-h-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4567999999999999999999999999999999975443322221 1 246788899987752 2379
Q ss_pred CEEEEecccCCCCcc--------cCChhHHHHHhHHHHHHHHHHHHHc----------CC-eEEEeecCccccCCCCCCC
Q 013467 182 DQIYHLACPASPVHY--------KFNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 182 d~Vih~A~~~~~~~~--------~~~~~~~~~~nv~gt~~ll~~a~~~----------g~-r~i~iSS~~vy~~~~~~~~ 242 (442)
|+||||||....... .+++...+++|+.++.++++++... +. ++|++||...+.
T Consensus 83 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~------- 155 (257)
T 3tpc_A 83 HGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD------- 155 (257)
T ss_dssp CEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-------
T ss_pred CEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc-------
Confidence 999999997643221 2346778999999999999988653 33 899999988652
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++.... ....+......
T Consensus 156 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~-------- 214 (257)
T 3tpc_A 156 ---------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG----MPQDVQDALAA-------- 214 (257)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------------------C--------
T ss_pred ---------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc----CCHHHHHHHHh--------
Confidence 2223468999999999999998876 58999999999999875311 11111111111
Q ss_pred CCcee-EeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccC
Q 013467 320 DGKQT-RSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFT 358 (442)
Q Consensus 320 ~~~~~-~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s 358 (442)
.... ..+..++|+|+++++++.... .| .+++.+|..++
T Consensus 215 -~~p~~~r~~~~~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 215 -SVPFPPRLGRAEEYAALVKHICENTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp -CSSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCCC-
T ss_pred -cCCCCCCCCCHHHHHHHHHHHcccCCcCCcEEEECCCccCC
Confidence 1122 357889999999999998643 45 78888775543
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-23 Score=184.60 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=139.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC---CCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL---EVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~---~~d~Vih~A 188 (442)
|+|+||||+|+||++++++|+++ +|++++|+.... +....... . .++.+|+.+. .+. ++|+|||+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~-~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 74 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGAL-AELAREVG--A-RALPADLADELEAKALLEEAGPLDLLVHAV 74 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHH-HHHHHHHT--C-EECCCCTTSHHHHHHHHHHHCSEEEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHH-HHHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCCCCEEEECC
Confidence 57999999999999999999999 999999853221 11111111 1 6777887664 333 799999999
Q ss_pred ccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHH
Q 013467 189 CPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGK 263 (442)
Q Consensus 189 ~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (442)
|...... ..+++...+++|+.++.++++++++.+. +||++||...|. +..+...|+.+|
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~sK 138 (207)
T 2yut_A 75 GKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV----------------QVPGFAAYAAAK 138 (207)
T ss_dssp CCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH----------------SSTTBHHHHHHH
T ss_pred CcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCcchHHHHH
Confidence 9754322 2234677899999999999999976665 999999998773 223347899999
Q ss_pred HHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHH
Q 013467 264 RTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 264 ~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
...|.+++.++++ .|++++++|||+++++.. . +.+.....+++++|+|++++.+
T Consensus 139 ~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~----------------~-------~~~~~~~~~~~~~dva~~~~~~ 195 (207)
T 2yut_A 139 GALEAYLEAARKELLREGVHLVLVRLPAVATGLW----------------A-------PLGGPPKGALSPEEAARKVLEG 195 (207)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG----------------G-------GGTSCCTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc----------------c-------ccCCCCCCCCCHHHHHHHHHHH
Confidence 9999999998776 599999999999998641 0 1112335789999999999999
Q ss_pred HcCCCCc
Q 013467 341 MEGEHVG 347 (442)
Q Consensus 341 l~~~~~g 347 (442)
++++..+
T Consensus 196 ~~~~~~~ 202 (207)
T 2yut_A 196 LFREPVP 202 (207)
T ss_dssp HC--CCC
T ss_pred HhCCCCc
Confidence 9987654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=179.09 Aligned_cols=217 Identities=14% Similarity=0.080 Sum_probs=153.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L------- 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT-KAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 345679999999999999999999999999999998643211 111111 1346888999987652 1
Q ss_pred CCCCEEEEecccCC-CCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPAS-PVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~-~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||... ..... +.+...+++|+.++.++++++.. .+. +||++||...+..
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 156 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV------------ 156 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc------------
Confidence 36999999999654 22111 23567899999999999988754 455 9999999876522
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+..+...|+.+|.+.|.+++.++++ .|++++++|||+++++.... ......+...+..+.+ ..
T Consensus 157 --~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~~~~---------~~ 223 (260)
T 3awd_A 157 --NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRF--GMEKPELYDAWIAGTP---------MG 223 (260)
T ss_dssp --CSSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHH--HHTCHHHHHHHHHTCT---------TS
T ss_pred --CCCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhc--ccCChHHHHHHHhcCC---------cC
Confidence 11122367999999999999998876 69999999999999986420 0001223333333322 12
Q ss_pred eccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 326 SFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
.+++++|+|++++.++..+ ..| .|++.+|.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 4788999999999998753 245 78888763
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-21 Score=175.28 Aligned_cols=195 Identities=11% Similarity=0.124 Sum_probs=132.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
+.||+|+||||+|+||++++++|+++| ++|++++|+.....+ ....++.++.+|+.+. ++.++|+|||+
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-----PYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-----SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-----cccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 456789999999999999999999999 899999986432221 1234788999998774 56789999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
++.. .....+.++++++++.++ +||++||..+|+........... ... ..+...+..+
T Consensus 96 a~~~--------------~~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~ 154 (236)
T 3qvo_A 96 LTGE--------------DLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNN---AVI----GEPLKPFRRA 154 (236)
T ss_dssp CCST--------------THHHHHHHHHHHHHHTTCCEEEEECCCCC-----------------------CGGGHHHHHH
T ss_pred CCCC--------------chhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchh---hcc----cchHHHHHHH
Confidence 9741 112357799999999997 99999999999764332221110 011 2334445555
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce-eEeccCHHHHHHHHHHHHcCCC
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
|..+ +..|+++++||||.++++... .......+.. ...+++++|+|+++++++.++.
T Consensus 155 ~~~l----~~~gi~~~~vrPg~i~~~~~~------------------~~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~ 212 (236)
T 3qvo_A 155 ADAI----EASGLEYTILRPAWLTDEDII------------------DYELTSRNEPFKGTIVSRKSVAALITDIIDKPE 212 (236)
T ss_dssp HHHH----HTSCSEEEEEEECEEECCSCC------------------CCEEECTTSCCSCSEEEHHHHHHHHHHHHHSTT
T ss_pred HHHH----HHCCCCEEEEeCCcccCCCCc------------------ceEEeccCCCCCCcEECHHHHHHHHHHHHcCcc
Confidence 5554 456999999999999986421 0111111112 2368999999999999999876
Q ss_pred --Cc-cEEecCCCc
Q 013467 346 --VG-PFNLGNPGE 356 (442)
Q Consensus 346 --~g-~~~i~~~~~ 356 (442)
.+ .|++++++.
T Consensus 213 ~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 213 KHIGENIGINQPGT 226 (236)
T ss_dssp TTTTEEEEEECSSC
T ss_pred cccCeeEEecCCCC
Confidence 34 899988653
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=183.73 Aligned_cols=221 Identities=15% Similarity=0.097 Sum_probs=151.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~ 178 (442)
+++++++||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. +
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 102 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF 102 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence 456799999999999999999999999999999985332222222211 2357888899987752 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .+++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 168 (281)
T 3v2h_A 103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV-------------- 168 (281)
T ss_dssp SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc--------------
Confidence 369999999997554332 2346678999999999999887 45555 899999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHH--HHHcCCC-cEEecCCce
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVA--QALRKEP-LTVYGDGKQ 323 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++.... ....... ....... ...+.++..
T Consensus 169 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p 242 (281)
T 3v2h_A 169 --ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEK----QIPDQARTRGITEEQVINEVMLKGQP 242 (281)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------------------CCT
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhh----hcchhhhhcCCCHHHHHHHHHHhcCC
Confidence 22234689999999999999988764 8999999999999875311 0010000 0000000 011223344
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+.+++|+|+++++++..+. .| .+++.+|
T Consensus 243 ~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG 277 (281)
T 3v2h_A 243 TKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG 277 (281)
T ss_dssp TCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred CCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence 5678999999999999997653 45 7888776
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=178.13 Aligned_cols=212 Identities=17% Similarity=0.120 Sum_probs=149.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc-----c-------CC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL-----L-------LE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----~-------~~ 180 (442)
+|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. + .+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEE-TARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999986432111 11111 1246788899987641 2 27
Q ss_pred CCEEEEecccCCCCc---c----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH---Y----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~---~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+|+||||||...... . .+++...+++|+.++.++++.+ ++.+. +||++||...+..
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 148 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVA------------ 148 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC------------
Confidence 999999999754322 1 1236678899999997776655 44565 9999999876532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
......|+.+|.+.|.+++.++.+. |++++++|||+++++....... ...+...+....+ ..
T Consensus 149 ----~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~ 213 (250)
T 2cfc_A 149 ----FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD--QPELRDQVLARIP---------QK 213 (250)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT--SHHHHHHHHTTCT---------TC
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC--CHHHHHHHHhcCC---------CC
Confidence 2234689999999999999987765 8999999999999986421000 0122233333222 12
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+.+.+|+|++++.++..+. .| .+++.+|.
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 214 EIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp SCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred CCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 47789999999999998653 35 77777663
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=182.41 Aligned_cols=217 Identities=15% Similarity=0.138 Sum_probs=152.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC--CCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--NPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++|+||||+|+||++++++|+++|++|++++|......+....... ..++.++.+|+.+.. +.
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3467899999999999999999999999999998864433222222211 246889999987752 13
Q ss_pred CCCEEEEecccCC--CCc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPAS--PVH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~--~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|+||||||... ... ..+++...+++|+.++.++++++ ++.+. ++|++||.+.++.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------ 152 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSA------------ 152 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGC------------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhccc------------
Confidence 7999999999421 111 12236678999999999999987 56665 9999999865422
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++... ............ .....
T Consensus 153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~---------~~p~~ 217 (264)
T 3i4f_A 153 --PGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKE----ATIQEARQLKEH---------NTPIG 217 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGS----CCHHHHHHC-----------------
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccch----hccHHHHHHHhh---------cCCCC
Confidence 12233478999999999999998876 5899999999999987531 122222211111 11234
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+.+.+|+|+++++++..+. .| ++++.+|-..
T Consensus 218 r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 218 RSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCceee
Confidence 57889999999999997643 35 8888877543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=182.84 Aligned_cols=215 Identities=14% Similarity=0.076 Sum_probs=138.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L------- 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 178 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNE-CLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3556799999999999999999999999999999986332111 11111 1246788889987641 1
Q ss_pred -CCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 -LEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 -~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||...... ..+++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------- 156 (266)
T 1xq1_A 90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV------------- 156 (266)
T ss_dssp TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc-------------
Confidence 57999999999754322 12246678999999999999988 45565 999999987653
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|...|.+++.++.+. |++++++|||+++++..... ....+....... ....
T Consensus 157 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~---------~~~~ 221 (266)
T 1xq1_A 157 ---SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV---YDDEFKKVVISR---------KPLG 221 (266)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------------
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh---cCHHHHHHHHhc---------CCCC
Confidence 12234789999999999999987764 89999999999999863110 001111111111 1123
Q ss_pred eccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 326 SFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
.+++++|+|++++.++..+ ..| .+++.+|..
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLT 256 (266)
T ss_dssp --CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHcCccccCccCcEEEEcCCcc
Confidence 5788999999999998753 235 788887743
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=179.97 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=150.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+... +.....+. . .++.+|+.+.. +.++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG--KEVAEAIG--G-AFFQVDLEDERERVRFVEEAAYALGRV 78 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH--HHHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH--HHHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 346799999999999999999999999999999996543 22222222 3 67888887641 2369
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||........ +++...+++|+.++.++++++.. .+. +||++||...+. +
T Consensus 79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 142 (256)
T 2d1y_A 79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------------A 142 (256)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------B
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------------C
Confidence 9999999975443222 23567899999999999887743 455 999999987542 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHH-cCCCcEEecCCceeEecc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL-RKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++.+. |+++.+++||.+.++.. ..++.... .......+........++
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
T 2d1y_A 143 EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV--------LEAIALSPDPERTRRDWEDLHALRRLG 214 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHHHC--------CHHHHTTSTTSSCB
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh--------hhccccccCCHHHHHHHHhcCCCCCCc
Confidence 2223679999999999999987764 89999999999886421 11100000 000000011222234688
Q ss_pred CHHHHHHHHHHHHcCC---CCc-cEEecCCCccCH
Q 013467 329 FVSDLVEGLMRLMEGE---HVG-PFNLGNPGEFTM 359 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~s~ 359 (442)
+++|+|+++++++..+ ..| .+++.+|...++
T Consensus 215 ~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 215 KPEEVAEAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred CHHHHHHHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 9999999999999765 245 888888765443
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=181.66 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=156.9
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
...++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEA-VAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999986432211 11111 2357888999987752
Q ss_pred cCCCCEEEEecccCCCCcc---cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY---KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~---~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+.++|+||||||....... .++++..+++|+.++.++++++ ++.+. ++|++||...+.
T Consensus 87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 152 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN-------------- 152 (256)
T ss_dssp HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC--------------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC--------------
Confidence 2369999999997654332 2346778999999999999887 34454 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++...... ............ ....
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~~---------p~~r 218 (256)
T 3gaf_A 153 --TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL---TPEIERAMLKHT---------PLGR 218 (256)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC---CHHHHHHHHTTC---------TTSS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc---CHHHHHHHHhcC---------CCCC
Confidence 22334789999999999999988764 899999999999876321000 012222222222 2235
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccCH
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTM 359 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~ 359 (442)
+.+++|+|+++++++.... .| .+++.+|...++
T Consensus 219 ~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred CCCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 7789999999999997542 35 899988876654
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=177.81 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=141.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------C
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------L 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~ 179 (442)
.++++|+||||+|+||++++++|+++|++|+++++......+.....+ ...++.++.+|+.+.. + .
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 356799999999999999999999999999999543222222221111 1346788999987752 1 2
Q ss_pred CCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCc-cccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||...... ..+++...+++|+.++.++++++. +.+. +||++||.. .|+.
T Consensus 83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 149 (247)
T 2hq1_A 83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN------------- 149 (247)
T ss_dssp CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC-------------
Confidence 7999999999754321 234577889999999888887764 3465 999999975 4432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.....|+.+|.+.|.+++.++++. |+++.+++||.+.++.... +...+...+..+. ....
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~---------~~~~ 212 (247)
T 2hq1_A 150 ----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV----LPDKVKEMYLNNI---------PLKR 212 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHTTS---------TTSS
T ss_pred ----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh----cchHHHHHHHhhC---------CCCC
Confidence 123679999999999999987764 8999999999988753110 0112222222221 1235
Q ss_pred ccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
+++++|+|++++.++..+ ..| .|++.+|.
T Consensus 213 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 213 FGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 789999999999998754 235 89998764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=182.69 Aligned_cols=217 Identities=18% Similarity=0.111 Sum_probs=155.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF 117 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999986543322211111 1247888999998752 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~-------------- 183 (293)
T 3rih_A 118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV-------------- 183 (293)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc--------------
Confidence 368999999997644322 2346778999999999999987 45554 999999976421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||+|+++.... ....+........++ ..
T Consensus 184 -~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~r 249 (293)
T 3rih_A 184 -TGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVD----MGEEYISGMARSIPM---------GM 249 (293)
T ss_dssp -BBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH----TCHHHHHHHHTTSTT---------SS
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhh----ccHHHHHHHHhcCCC---------CC
Confidence 11223468999999999999998876 48999999999999874211 112333334443322 23
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
+...+|+|+++++++.... .| .+++.+|..+
T Consensus 250 ~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 250 LGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 5578999999999987542 35 7888777543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-20 Score=173.45 Aligned_cols=214 Identities=15% Similarity=0.075 Sum_probs=140.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+.... ...+.++.+|+.+.. +.++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 75 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE---------QYPFATEVMDVADAAQVAQVCQRLLAETERL 75 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS---------CCSSEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh---------cCCceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4567999999999999999999999999999999864321 112677888887641 2369
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||....... .++++..+++|+.++.++++++ ++.+. +||++||...+. +
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 139 (250)
T 2fwm_X 76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT----------------P 139 (250)
T ss_dssp CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------C
Confidence 999999997543221 2346778999999999999887 44554 999999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHH-HHHcCCCcEEecCCceeEecc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVA-QALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|...+.+++.++.+. |+++.+|+||+++++....... ...+.. .+.... ..+........+.
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~p~~~~~ 215 (250)
T 2fwm_X 140 RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV--SDDAEEQRIRGFG--EQFKLGIPLGKIA 215 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------------
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc--ChhHHHHHHhhhh--hcccccCCCCCCc
Confidence 2234689999999999999987764 8999999999999875311000 000000 000000 0000011223578
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+.+|+|+++++++..+. .| .+++.+|..
T Consensus 216 ~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 216 RPQEIANTILFLASDLASHITLQDIVVDGGST 247 (250)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 89999999999997642 45 777776643
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=171.04 Aligned_cols=192 Identities=14% Similarity=0.214 Sum_probs=136.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHH-hCCCeEEEEeCCCC-CCccccccccCCCceeEEecccccc-----ccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLI-ARGDSVIVVDNFFT-GRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll-~~g~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 188 (442)
|++|+||||+|+||++++++|+ ++|++|++++|+.. ... .+. ....++.++.+|+.+. .+.++|+|||+|
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~-~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIP-PEI--IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSC-HHH--HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccch-hhc--cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence 3469999999999999999999 89999999998533 111 110 0345788999998764 567899999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC-hhHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS-CYDEGKRTA 266 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK~~~ 266 (442)
|.. |+. ++++++++++.++ +||++||..+|+..... ..+ |. . .... .|+.+|...
T Consensus 82 g~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~-~~~--~~---~-~~~~~~y~~~K~~~ 138 (221)
T 3r6d_A 82 MES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA-LEK--WT---F-DNLPISYVQGERQA 138 (221)
T ss_dssp CCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH-HHH--HH---H-HTSCHHHHHHHHHH
T ss_pred CCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc-ccc--cc---c-cccccHHHHHHHHH
Confidence 842 445 9999999999997 99999999988642211 000 00 0 0113 799999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce-eEeccCHHHHHHHHHHHH--cC
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLMRLM--EG 343 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~ai~~~l--~~ 343 (442)
|.+++ +.|+++++||||+++++... ..+........ ...+++.+|+|+++++++ .+
T Consensus 139 e~~~~----~~~i~~~~vrpg~v~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~ 197 (221)
T 3r6d_A 139 RNVLR----ESNLNYTILRLTWLYNDPEX-----------------TDYELIPEGAQFNDAQVSREAVVKAIFDILHAAD 197 (221)
T ss_dssp HHHHH----HSCSEEEEEEECEEECCTTC-----------------CCCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSC
T ss_pred HHHHH----hCCCCEEEEechhhcCCCCC-----------------cceeeccCCccCCCceeeHHHHHHHHHHHHHhcC
Confidence 99885 36899999999999987321 11111111111 124789999999999999 77
Q ss_pred CCC---ccEEecCC
Q 013467 344 EHV---GPFNLGNP 354 (442)
Q Consensus 344 ~~~---g~~~i~~~ 354 (442)
+.. +.+.++++
T Consensus 198 ~~~~~~~~~~i~~~ 211 (221)
T 3r6d_A 198 ETPFHRTSIGVGEP 211 (221)
T ss_dssp CGGGTTEEEEEECT
T ss_pred hhhhhcceeeecCC
Confidence 642 36777654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=182.07 Aligned_cols=227 Identities=17% Similarity=0.102 Sum_probs=156.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC--------ccccc---ccc--CCCceeEEeccccccc--
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR--------KENVM---HHF--GNPNFELIRHDVVEPL-- 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~--------~~~~~---~~~--~~~~v~~~~~D~~~~~-- 177 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.... .+.+. ..+ ...++.++.+|+.+..
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 45678999999999999999999999999999999863211 11111 000 1347888999997752
Q ss_pred ----------cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCC
Q 013467 178 ----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHP 241 (442)
Q Consensus 178 ----------~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~ 241 (442)
+.++|+||||||........+++...+++|+.++.++++++. +.+ .+||++||...+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 166 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--- 166 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc---
Confidence 136999999999765444445678899999999999998863 333 3899999987652210
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHH-HHcCCCcEE
Q 013467 242 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ-ALRKEPLTV 317 (442)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~ 317 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|+||+|.++... ......++.. .........
T Consensus 167 ---------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~~ 234 (278)
T 3sx2_A 167 ---------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMIN---NEFTREWLAKMAAATDTPGA 234 (278)
T ss_dssp ---------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTS---SHHHHHHHHHHHHHCC--CT
T ss_pred ---------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccch---hhhHHHHHhhccchhhhhhh
Confidence 111223579999999999999988764 799999999999998641 1122222221 111211111
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+++... ..+.+++|+|+++++++.... .| .+++.+|.
T Consensus 235 ~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 235 MGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGF 275 (278)
T ss_dssp TSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred hhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCc
Confidence 223223 578899999999999997543 45 78887763
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=177.10 Aligned_cols=212 Identities=15% Similarity=0.056 Sum_probs=149.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c-------CCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L-------LEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~~~ 181 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+..... .....+. .++.++.+|+.+.. + .++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i 87 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQ-AVVAGLE-NGGFAVEVDVTKRASVDAAMQKAIDALGGF 87 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTCT-TCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHh-cCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 45679999999999999999999999999999998642211 1111111 25778889987642 2 279
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||....... .+++...+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 88 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 151 (263)
T 3ak4_A 88 DLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV---------------- 151 (263)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS----------------
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc----------------
Confidence 999999997543221 124667899999999999887753 34 4999999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchH-----------HHHHHHHHcCCCcEE
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVV-----------SNFVAQALRKEPLTV 317 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 317 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++... ... ......+....
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 223 (263)
T 3ak4_A 152 GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQE----REIIWEAELRGMTPEAVRAEYVSLT---- 223 (263)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHH----HHHHHHHHHHTSCHHHHHHHHHHTC----
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhh----hhccccccccccCcHHHHHHHHhcC----
Confidence 11223689999999999999987764 899999999999986421 000 11111111111
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
....+++++|+|+++++++..+ ..| .+++.+|..
T Consensus 224 -----p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 224 -----PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 1235889999999999999764 245 788887743
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=184.43 Aligned_cols=218 Identities=17% Similarity=0.112 Sum_probs=152.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L------ 178 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------ 178 (442)
+..++|+|+||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. +
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999983222221111111 1346788899987652 2
Q ss_pred -CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccc-cCCCCCCCCCCCCCC
Q 013467 179 -LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVY-GDPLQHPQKETYWGN 249 (442)
Q Consensus 179 -~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy-~~~~~~~~~E~~~~~ 249 (442)
.++|+|||+||....... .+.+...+++|+.++.++++++... +.+||++||...+ ..
T Consensus 97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 163 (274)
T 1ja9_A 97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG------------- 163 (274)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS-------------
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCC-------------
Confidence 279999999997543221 1235678999999999999988764 4589999998876 21
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC--------chH-HHHHHHHHcCCCcEE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG--------RVV-SNFVAQALRKEPLTV 317 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~--------~~~-~~~~~~~~~~~~~~~ 317 (442)
......|+.+|++.|.+++.++++. |+++++++||.++++....... ... ..+...+..+
T Consensus 164 ---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 235 (274)
T 1ja9_A 164 ---IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM----- 235 (274)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT-----
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc-----
Confidence 1123679999999999999987764 8999999999998763210000 000 1121122222
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.....+++++|+|++++.++.++. .| .|++.+|
T Consensus 236 ----~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 236 ----NPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 123468899999999999997642 35 8888876
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-21 Score=176.18 Aligned_cols=204 Identities=19% Similarity=0.163 Sum_probs=149.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC------CCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL------EVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~------~~d~V 184 (442)
+|+|+||||+|+||++++++|+++|++|++++|+.. . ..+.++.+|+.+. .+. ++|+|
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~--~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~l 70 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE--G---------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAV 70 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC--S---------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc--c---------cceEEEeCCCCCHHHHHHHHHHHHhhCCceEE
Confidence 468999999999999999999999999999998643 1 2346788888764 222 78999
Q ss_pred EEecccCCCCcccC--------ChhHHHHHhHHHHHHHHHHHHHc---------C-C-eEEEeecCccccCCCCCCCCCC
Q 013467 185 YHLACPASPVHYKF--------NPVKTIKTNVVGTLNMLGLAKRV---------G-A-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 185 ih~A~~~~~~~~~~--------~~~~~~~~nv~gt~~ll~~a~~~---------g-~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
||+||......... ++...+++|+.++.++++++... + . +||++||...+..
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 141 (242)
T 1uay_A 71 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG--------- 141 (242)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC---------
T ss_pred EEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC---------
Confidence 99999754332211 46778899999999999988653 1 1 8999999987642
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
..+...|+.+|.+.+.+++.++.+. |++++++|||+++++.... +...+...+....++
T Consensus 142 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~------- 203 (242)
T 1uay_A 142 -------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG----LPEKAKASLAAQVPF------- 203 (242)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT----SCHHHHHHHHTTCCS-------
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhc----cchhHHHHHHhhCCC-------
Confidence 1234689999999999998887664 8999999999999874311 112222333332221
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFT 358 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s 358 (442)
...+++++|+|++++.++.++. .| .|++.+|..++
T Consensus 204 -~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 -PPRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp -SCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCCCC
T ss_pred -cccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCCeecC
Confidence 0347889999999999998743 45 88888776543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=177.70 Aligned_cols=214 Identities=16% Similarity=0.062 Sum_probs=148.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCce-eEEeccccccc-----------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF-ELIRHDVVEPL-----------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~-----------~~~~ 181 (442)
.++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ..++ .++.+|+.+.. +.++
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i 86 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALD-RAAQEL-GAAVAARIVADVTDAEAMTAAAAEAEAVAPV 86 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-GGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-cccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence 45679999999999999999999999999999998643211 111111 1245 77888887641 2479
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||........ +.+...+++|+.++.++++++ ++.+. +||++||...+.. .+
T Consensus 87 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------------~~ 152 (254)
T 2wsb_A 87 SILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIV--------------NR 152 (254)
T ss_dssp CEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------CS
T ss_pred cEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccC--------------CC
Confidence 9999999975443222 235678899999977776655 45565 9999999876532 12
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
..+...|+.+|.+.|.+++.++.+. |++++++|||+++++....... ...+...+....+ ...+++
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~ 221 (254)
T 2wsb_A 153 PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRE--RPELFETWLDMTP---------MGRCGE 221 (254)
T ss_dssp SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHT--CHHHHHHHHHTST---------TSSCBC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcccc--ChHHHHHHHhcCC---------CCCCCC
Confidence 2223679999999999999987764 8999999999999874210000 0122223333221 135789
Q ss_pred HHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 330 VSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 330 v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
++|+|++++.++..+ ..| .+++.+|
T Consensus 222 ~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 222 PSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 999999999998653 245 7777765
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=178.60 Aligned_cols=211 Identities=13% Similarity=0.090 Sum_probs=147.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc-----c-------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL-----L------- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----~------- 178 (442)
.++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAK-AVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV 83 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999999998532211 111111 1246788889987641 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+|||+||....... .+++...+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------- 150 (248)
T 2pnf_A 84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTG------------- 150 (248)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHC-------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCC-------------
Confidence 379999999997543221 2235678999999997766654 45565 9999999764321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.++++ .|+++++++||.++++.... +...+........+ ...
T Consensus 151 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~ 214 (248)
T 2pnf_A 151 ---NVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV----LSEEIKQKYKEQIP---------LGR 214 (248)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG----SCHHHHHHHHHTCT---------TSS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh----ccHHHHHHHHhcCC---------CCC
Confidence 112367999999999999988765 38999999999999875321 11222222222211 125
Q ss_pred ccCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
+++++|+|++++.++..+ ..| .|++.+|
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 215 FGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 789999999999998753 235 7888765
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=181.47 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=154.8
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----------c
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----------L 178 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----------~ 178 (442)
...++++++||||+|+||++++++|+++|++|++++|.. ..+.....+ ...++.++.+|+.+.. .
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD--GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT 104 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST--HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH--HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc
Confidence 446678999999999999999999999999999999642 111221111 2346788899987752 1
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||........ +++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------------- 170 (273)
T 3uf0_A 105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ-------------- 170 (273)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC--------------
Confidence 3699999999976543322 246778999999999999877 44555 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|.++....... .......+....+ ...
T Consensus 171 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p---------~~r 237 (273)
T 3uf0_A 171 --GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRA--DDERAAEITARIP---------AGR 237 (273)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--SHHHHHHHHHHST---------TSS
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhccc--CHHHHHHHHhcCC---------CCC
Confidence 2233468999999999999998876 58999999999999875310000 0112222222221 124
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
+..++|+|+++++++..+. .| .+++.+|...
T Consensus 238 ~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCEEEECcCccC
Confidence 6778999999999997642 45 7888877543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=181.48 Aligned_cols=213 Identities=10% Similarity=0.059 Sum_probs=151.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------LE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~~ 180 (442)
++|+|+||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+.. + .+
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG 85 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999999999996222222221111 1346788999987652 2 27
Q ss_pred CCEEEEeccc-CCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC------CeEEEeecCccccCCCCCCCCCC
Q 013467 181 VDQIYHLACP-ASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG------ARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 181 ~d~Vih~A~~-~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g------~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+|+||||||. ...... .+.+...+++|+.++.++++++. +.+ .+||++||...+..
T Consensus 86 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 156 (258)
T 3afn_B 86 IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG--------- 156 (258)
T ss_dssp CSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC---------
T ss_pred CCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC---------
Confidence 9999999996 322211 12356788999999999888663 222 48999999876531
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+..+...|+.+|.+.|.+++.++.+. |+++.++|||+++++.... ....+...+..+.+
T Consensus 157 ------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~-------- 218 (258)
T 3afn_B 157 ------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHAD----KTQDVRDRISNGIP-------- 218 (258)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTT----CCHHHHHHHHTTCT--------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccc----cCHHHHHHHhccCC--------
Confidence 11234689999999999999887664 8999999999999985321 11233333333322
Q ss_pred eeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPG 355 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~ 355 (442)
...+++++|+|++++.++.++ ..| .|++.+|.
T Consensus 219 -~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 -MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp -TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred -CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 236889999999999998753 235 78887764
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=184.76 Aligned_cols=219 Identities=13% Similarity=0.025 Sum_probs=152.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND-CLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3456799999999999999999999999999999986432111 11111 1246788899987751 2
Q ss_pred -CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 -LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 -~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||....... .+++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (260)
T 2ae2_A 85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------------- 151 (260)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS-------------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-------------
Confidence 579999999997543221 2246678999999999999887 34555 999999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++.... .........+....... ..
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~ 219 (260)
T 2ae2_A 152 ---AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC---------AL 219 (260)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS---------TT
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcC---------CC
Confidence 22233679999999999999988764 8999999999998763110 00000001111122221 12
Q ss_pred EeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCcc
Q 013467 325 RSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGEF 357 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~ 357 (442)
..+.+++|+|+++++++..+ ..| .+++.+|...
T Consensus 220 ~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 220 RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 35789999999999998754 245 7888777543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=175.24 Aligned_cols=214 Identities=14% Similarity=0.051 Sum_probs=146.4
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCE
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQ 183 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~ 183 (442)
...++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...+.+..+|+.+. ...++|+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLK-SLGNAL-KDNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-CSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh-ccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 3456779999999999999999999999999999998533211 111111 23677888888764 2236999
Q ss_pred EEEecccCCCC----cccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPV----HYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
||||||..... ...+++...+++|+.++.++++++. +.+. +||++||...+. +..
T Consensus 88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 151 (249)
T 3f9i_A 88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA----------------GNP 151 (249)
T ss_dssp EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC------------------CCS
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc----------------CCC
Confidence 99999975432 2234678899999999999988763 3454 999999987652 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+ .|+++.+++||.+.++..... ..........+. ....+.+++
T Consensus 152 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~ 218 (249)
T 3f9i_A 152 GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL----NEKQREAIVQKI---------PLGTYGIPE 218 (249)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C----CHHHHHHHHHHC---------TTCSCBCHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc----CHHHHHHHHhcC---------CCCCCcCHH
Confidence 3468999999999999988775 489999999999988753211 122222222221 223578899
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
|+|++++.++..+. .| .+++.+|..
T Consensus 219 dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 219 DVAYAVAFLASNNASYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHcCCccCCccCcEEEECCCEe
Confidence 99999999997653 35 788887643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=177.00 Aligned_cols=217 Identities=17% Similarity=0.117 Sum_probs=155.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~ 178 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356679999999999999999999999999999998643222111111 12247888999997752 2
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----CC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||........ ++++..+++|+.++.++++++... +. ++|++||.....
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 152 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI-------------- 152 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc--------------
Confidence 3799999999975443222 236678999999999998877543 54 999999976421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++...... ..+........++ ..
T Consensus 153 -~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~r 218 (262)
T 3pk0_A 153 -TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG----EEYIASMARSIPA---------GA 218 (262)
T ss_dssp -BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC----HHHHHHHHTTSTT---------SS
T ss_pred -CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC----HHHHHHHHhcCCC---------CC
Confidence 11223468999999999999998877 5999999999999987432111 2333333333222 24
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
+...+|+|+++++++..+. .| .+++.+|..+
T Consensus 219 ~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 219 LGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 6788999999999997653 45 7888877543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=176.82 Aligned_cols=208 Identities=16% Similarity=0.125 Sum_probs=147.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCCC-CccccccccCCCceeEEecccccc-c------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTG-RKENVMHHFGNPNFELIRHDVVEP-L------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~-~------------~ 178 (442)
.++|+|+||||+|+||++++++|+++|++ |++++|+... ..+.+.......++.++.+|+.+. . +
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 45679999999999999999999999996 9999986421 111111111234678889998865 2 1
Q ss_pred CCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc--------CCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--------g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|+||||||.. ..++++..+++|+.++.++++++... +.+||++||...+.
T Consensus 83 g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 143 (254)
T 1sby_A 83 KTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN--------------- 143 (254)
T ss_dssp SCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc---------------
Confidence 2699999999964 23567889999999999999988532 23799999988763
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchH--HHHHHHHHcCCCcEEecCCceeE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++....... .. ...........
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~------------ 209 (254)
T 1sby_A 144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNS-WLDVEPRVAELLLSH------------ 209 (254)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCC-GGGSCTTHHHHHTTS------------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccch-hhhhhHHHHHHHhcC------------
Confidence 2223368999999999999998775 58999999999999863211000 00 00011111111
Q ss_pred eccCHHHHHHHHHHHHcCCCCc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEHVG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~~g-~~~i~~~ 354 (442)
.+.+++|+|++++.++.....| .|++.+|
T Consensus 210 ~~~~~~dvA~~i~~~~~~~~~G~~~~v~gG 239 (254)
T 1sby_A 210 PTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence 2237899999999999866666 7777776
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=177.05 Aligned_cols=215 Identities=14% Similarity=0.076 Sum_probs=149.8
Q ss_pred CCCCCCEEEEEcCCc-hhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc--ccCCCceeEEeccccccc-----------
Q 013467 112 LKRKGLRIVVTGGAG-FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH--HFGNPNFELIRHDVVEPL----------- 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG-~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~----------- 177 (442)
...++++|+||||+| .||++++++|+++|++|++++|+.....+.... .....++.++.+|+.+..
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 346678999999998 699999999999999999999864322221111 112357889999997752
Q ss_pred -cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc-----CC-eEEEeecCccccCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV-----GA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~-----g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|+||||||....... .++++..+++|+.++.++++++... +. +||++||...+
T Consensus 98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------ 165 (266)
T 3o38_A 98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGW------------ 165 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGT------------
T ss_pred HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHc------------
Confidence 2368999999997554322 2236678999999999999887543 34 89999998765
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+..... ........ +.....
T Consensus 166 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~---------~~~~~~ 229 (266)
T 3o38_A 166 ----RAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT---SSSELLDR---------LASDEA 229 (266)
T ss_dssp ----CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------CCT
T ss_pred ----CCCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc---CcHHHHHH---------HHhcCC
Confidence 23334478999999999999998776 589999999999987642100 00111111 112223
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+.+++|+|+++++++..+. .| .+++.+|
T Consensus 230 ~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 230 FGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred cCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 3467889999999999987642 35 7887765
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=176.74 Aligned_cols=210 Identities=19% Similarity=0.133 Sum_probs=148.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|........ ....+|+.+. .+.+
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~----------~~~~~Dv~~~~~~~~~~~~~~~~~g~ 94 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD----------LHLPGDLREAAYADGLPGAVAAGLGR 94 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS----------EECCCCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh----------hccCcCCCCHHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999864332211 2234565543 1237
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.|+.++++++ ++.+. ++|++||...+.
T Consensus 95 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 158 (266)
T 3uxy_A 95 LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR---------------- 158 (266)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------
Confidence 9999999997654332 2346678899999999999987 55555 999999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc---CCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI---DDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++.... ............+... ....
T Consensus 159 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~ 229 (266)
T 3uxy_A 159 PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRT---------VPLG 229 (266)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTT---------STTS
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhc---------CCCC
Confidence 22334689999999999999988765 8999999999998863200 0000011111222222 2234
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+.+++|+|+++++++..+. .| .+++.+|..+
T Consensus 230 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 230 RIAEPEDIADVVLFLASDAARYLCGSLVEVNGGKAV 265 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCEeC
Confidence 67889999999999997653 35 7888877654
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=180.29 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=152.9
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 178 (442)
.++|+|+||||+ |+||++++++|+++|++|++++|+.. ..+...... ....+.++.+|+.+.. +
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF 84 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356799999999 99999999999999999999998642 111111110 0123678889987752 1
Q ss_pred CCCCEEEEecccCCC----C----cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP----V----HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~----~----~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|+||||||.... . ...++++..+++|+.++.++++++... +.+||++||...+.
T Consensus 85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 152 (261)
T 2wyu_A 85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK------------ 152 (261)
T ss_dssp SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS------------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC------------
Confidence 268999999997542 1 112346778999999999999999765 34899999977652
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++.... ......+...+....++
T Consensus 153 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~p~--------- 217 (261)
T 2wyu_A 153 ----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARS--IPGFTKMYDRVAQTAPL--------- 217 (261)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGG--CTTHHHHHHHHHHHSTT---------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhh--ccccHHHHHHHHhcCCC---------
Confidence 22233679999999999999987765 8999999999999975321 11122233333222221
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
..+.+++|+|+++++++..+. .| .+++.+|...+
T Consensus 218 ~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 255 (261)
T 2wyu_A 218 RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIM 255 (261)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCcccc
Confidence 246689999999999986532 35 78888775544
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-21 Score=180.10 Aligned_cols=226 Identities=17% Similarity=0.105 Sum_probs=155.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC--------ccccc---cc--cCCCceeEEeccccccc---
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR--------KENVM---HH--FGNPNFELIRHDVVEPL--- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~--------~~~~~---~~--~~~~~v~~~~~D~~~~~--- 177 (442)
.++++++||||+|+||++++++|+++|++|++++|+.... .+.+. .. ....++.++.+|+.+..
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 87 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE 87 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 4567999999999999999999999999999999963321 11111 10 12356888999987752
Q ss_pred ---------cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCC
Q 013467 178 ---------LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 178 ---------~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~ 239 (442)
+.++|+||||||....... .++++..+++|+.++.++++++ ++.+. ++|++||...+.
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 163 (281)
T 3s55_A 88 SFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS---- 163 (281)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC----
Confidence 2369999999997653322 2346778999999999999886 34454 999999987662
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCc-
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL- 315 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~- 315 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||+|+++.... ......+.........
T Consensus 164 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~ 228 (281)
T 3s55_A 164 ------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHN---DFVFGTMRPDLEKPTLK 228 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSS---HHHHHC-------CCHH
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccc---hhhhccccccccccchh
Confidence 2233478999999999999999876 48999999999999986421 0000000000000000
Q ss_pred ----EEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 316 ----TVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 316 ----~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
...........+.+++|+|+++++++..+. .| .+++.+|...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 229 DVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred HHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 000011122568899999999999997653 35 88988876543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=176.04 Aligned_cols=214 Identities=16% Similarity=0.075 Sum_probs=149.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------C
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------L 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~ 179 (442)
.++++|+||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. + .
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 345799999999999999999999999999999983222211111111 1246788889987642 2 2
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||....... .+++...+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 150 (261)
T 1gee_A 85 KLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------------- 150 (261)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC--------------
Confidence 79999999997543221 223667899999999988877643 34 4999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchH--HHHHHHHHcCCCcEEecCCcee
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+..+...|+.+|.+.+.+++.++.+. |++++++|||+++++... ... ..+...+....+ .
T Consensus 151 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~---------~ 215 (261)
T 1gee_A 151 --PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA----EKFADPEQRADVESMIP---------M 215 (261)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH----HHHHSHHHHHHHHTTCT---------T
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhh----hcccChhHHHHHHhcCC---------C
Confidence 22334789999999999998887654 899999999999987531 010 112222222111 1
Q ss_pred EeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 325 RSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
..+++++|+|++++.++..+ ..| .+++.+|..
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 216 GYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCcc
Confidence 35789999999999998753 235 788877643
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=176.12 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=147.2
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------c
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 178 (442)
.+..++++|+||||+|+||++++++|+++|++|++++|+.....+... ..++.++.+|+.+.. +
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR----QAGAVALYGDFSCETGIMAFIDLLKTQT 97 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH----HHTCEEEECCTTSHHHHHHHHHHHHHHC
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH----hcCCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 344567899999999999999999999999999999996533222211 124788889987752 2
Q ss_pred CCCCEEEEecccCCCCccc---CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~---~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|+||||||........ +++...+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 98 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 162 (260)
T 3gem_A 98 SSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK--------------- 162 (260)
T ss_dssp SCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT---------------
T ss_pred CCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC---------------
Confidence 3699999999975443322 2356789999999999988774 3444 999999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. ++++.+|+||.+.++... . ..+........ ....+.
T Consensus 163 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~--~----~~~~~~~~~~~---------p~~r~~ 226 (260)
T 3gem_A 163 -GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKD--D----AAYRANALAKS---------ALGIEP 226 (260)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC---------------------C---------CSCCCC
T ss_pred -CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCC--C----HHHHHHHHhcC---------CCCCCC
Confidence 22334689999999999999988765 599999999999876421 0 11111122211 122355
Q ss_pred CHHHHHHHHHHHHcCCC-Cc-cEEecCCCccC
Q 013467 329 FVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFT 358 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s 358 (442)
.++|+|++++++++... .| .+++.+|..++
T Consensus 227 ~~edva~~v~~L~~~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 227 GAEVIYQSLRYLLDSTYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp CTHHHHHHHHHHHHCSSCCSCEEEESTTTTTC
T ss_pred CHHHHHHHHHHHhhCCCCCCCEEEECCCcccC
Confidence 68999999999996553 45 88988876654
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=180.28 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=153.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999999999999996443222111110 1346788999987642 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc----C--CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~----g--~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||....... .+++...+++|+.++.++++++... + .+||++||...+...... .
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----~--- 163 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----L--- 163 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----T---
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc----c---
Confidence 358999999997543321 1235678899999999999987532 3 489999998765321100 0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+..+...|+.+|.+.|.+++.++.+. |++++++|||+++++..... ...+........+ ..
T Consensus 164 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~~ 228 (265)
T 1h5q_A 164 --NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASNIP---------LN 228 (265)
T ss_dssp --TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCT---------TS
T ss_pred --cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc----chhHHHHHHhcCc---------cc
Confidence 122334789999999999999987663 89999999999998753211 1222222222211 12
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
.+++++|+|++++.++..+. .| .+++.+|..
T Consensus 229 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 229 RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred CCCCHHHHHHHHHhhccCchhcCcCcEEEecCCEe
Confidence 47789999999999997642 35 788887743
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=176.97 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=145.8
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 179 (442)
+..++++|+||||+|+||++++++|+++|++|++++|+.....+ +...+ ...+.++.+|+.+.. +.
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAER-VAGEI-GDAALAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHh-CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45567899999999999999999999999999999986432221 11121 246788899987652 23
Q ss_pred CCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHHH----c-----CCeEEEeecCccccCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAKR----V-----GARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~-----g~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
++|+||||||.... .. ..+++...+++|+.++.++++++.. . +.++|++||...+.
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 152 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---------- 152 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS----------
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC----------
Confidence 68999999997542 21 1234667899999999888887632 2 12799999987652
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+++||.+.++............+.. .+....
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---------~~~~~~ 217 (261)
T 3n74_A 153 ------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRK---------KFRDSI 217 (261)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------C
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHH---------HHhhcC
Confidence 2233467999999999999998876 4899999999999887531100000001111 111222
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
....+++++|+|+++++++..+. .| .+++.+|..++
T Consensus 218 ~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~~~ 257 (261)
T 3n74_A 218 PMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRSIG 257 (261)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTC-
T ss_pred CcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcccC
Confidence 33468899999999999996542 45 88888876654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=174.11 Aligned_cols=202 Identities=12% Similarity=0.081 Sum_probs=145.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
..+++|+||||+|+||++++++|+++|++|++++|+... +. ......+.++.+|+.+.. +.++
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 88 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER----LK-ALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPA 88 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH----HH-TTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HH-HhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence 456799999999999999999999999999999985321 11 112346788899987751 2369
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||........ ++++..+++|+.|+.++++++ ++.+. +||++||...+. +
T Consensus 89 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------------~ 152 (266)
T 3p19_A 89 DAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK----------------T 152 (266)
T ss_dssp EEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------------C
Confidence 9999999976443222 235678999999999977765 45554 999999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||.|.++.................. . ....+++
T Consensus 153 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----~-------~~~r~~~ 221 (266)
T 3p19_A 153 FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR----V-------DMGGVLA 221 (266)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH----H-------HTTCCBC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc----c-------cccCCCC
Confidence 223468999999999999998876 4899999999999987532211111111111100 0 1124778
Q ss_pred HHHHHHHHHHHHcCCCCc
Q 013467 330 VSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~~g 347 (442)
++|+|+++++++.++...
T Consensus 222 pedvA~av~~l~~~~~~~ 239 (266)
T 3p19_A 222 ADDVARAVLFAYQQPQNV 239 (266)
T ss_dssp HHHHHHHHHHHHHSCTTE
T ss_pred HHHHHHHHHHHHcCCCCc
Confidence 999999999999988653
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=174.44 Aligned_cols=205 Identities=11% Similarity=-0.014 Sum_probs=142.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccC--------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLL-------- 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~-------- 179 (442)
++++|+||||+|+||++++++|+++| ++|++++|+..... .+... ...++.++.+|+.+. .+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~-~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT-ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH-HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH-HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 35689999999999999999999999 99999999643322 22211 245788999998764 122
Q ss_pred -CCCEEEEecccCC-CCc----ccCChhHHHHHhHHHHHHHHHHHHHc----------C------CeEEEeecCccccCC
Q 013467 180 -EVDQIYHLACPAS-PVH----YKFNPVKTIKTNVVGTLNMLGLAKRV----------G------ARFLLTSTSEVYGDP 237 (442)
Q Consensus 180 -~~d~Vih~A~~~~-~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~----------g------~r~i~iSS~~vy~~~ 237 (442)
++|+||||||... ... ..+.+...+++|+.++.++++++... + .+||++||...+...
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 159 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC
Confidence 7999999999755 221 12235678999999999998876432 3 499999998765322
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCC
Q 013467 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 314 (442)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 314 (442)
.. +. .+..+...|+.+|++.+.+++.++.+. |+++.+|+||++.++... .
T Consensus 160 ~~----~~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--------~---------- 212 (250)
T 1yo6_A 160 NT----SG-----SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG--------K---------- 212 (250)
T ss_dssp CC----ST-----TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred cc----cc-----cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC--------C----------
Confidence 11 01 122344789999999999999988765 899999999998875320 0
Q ss_pred cEEecCCceeEeccCHHHHHHHHHHHHcCCC---CccEEecCCCccC
Q 013467 315 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VGPFNLGNPGEFT 358 (442)
Q Consensus 315 ~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g~~~i~~~~~~s 358 (442)
..+++.+|+|+.++.++..+. .|.|...++..++
T Consensus 213 ----------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~ 249 (250)
T 1yo6_A 213 ----------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp ----------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred ----------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcCCC
Confidence 135678999999999998764 4666655554443
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=173.72 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=153.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. ..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEK-FENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999986432221 11111 2347888999987752 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+||||||....... .+++...+++|+.++.++++++.. .+. +||++||...+.
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (247)
T 3lyl_A 82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA--------------- 146 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc---------------
Confidence 58999999997644322 234667899999999999887643 444 999999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+++||.+.++.... ............ .....+
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~---------~~~~~~ 212 (247)
T 3lyl_A 147 -GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDK----LTDEQKSFIATK---------IPSGQI 212 (247)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTT----SCHHHHHHHHTT---------STTCCC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchh----ccHHHHHHHhhc---------CCCCCC
Confidence 2223478999999999999988775 48999999999999875321 112222222222 122467
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+++|+|++++.++..+. .| .+++.+|..+
T Consensus 213 ~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 213 GEPKDIAAAVAFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred cCHHHHHHHHHHHhCCCcCCccCCEEEECCCEec
Confidence 889999999999997543 35 8888877543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=174.56 Aligned_cols=214 Identities=19% Similarity=0.198 Sum_probs=150.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c-------CC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L-------LE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ..++.++.+|+.+.. + .+
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA-QAKKL-GNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHH-HHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 3456799999999999999999999999999999997543222 21212 246788899987651 2 27
Q ss_pred CCEEEEecccCCCCc----------ccCChhHHHHHhHHHHHHHHHHHHHc----------CC-eEEEeecCccccCCCC
Q 013467 181 VDQIYHLACPASPVH----------YKFNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----------~~~~~~~~~~~nv~gt~~ll~~a~~~----------g~-r~i~iSS~~vy~~~~~ 239 (442)
+|+||||||...... ..+++...+++|+.++.++++++... +. +||++||...+..
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--- 163 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG--- 163 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC---
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC---
Confidence 999999999754321 12236678999999999999988654 55 8999999887632
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||++.++.... ....+........+.
T Consensus 164 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~- 225 (265)
T 2o23_A 164 -------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS----LPEKVCNFLASQVPF- 225 (265)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTCSS-
T ss_pred -------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc----cCHHHHHHHHHcCCC-
Confidence 223468999999999999888765 48999999999998874311 001111111111111
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCc
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGE 356 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~ 356 (442)
...+++++|+|++++.++..+. .| .+++.+|..
T Consensus 226 -------~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdgG~~ 260 (265)
T 2o23_A 226 -------PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAIR 260 (265)
T ss_dssp -------SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCC
T ss_pred -------cCCCCCHHHHHHHHHHHhhcCccCceEEEECCCEe
Confidence 0247789999999999997653 45 788877644
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=181.00 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=150.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc------cCCCceeEEeccccccc-----c---
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH------FGNPNFELIRHDVVEPL-----L--- 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~------~~~~~v~~~~~D~~~~~-----~--- 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999998643211111100 02346888999987652 1
Q ss_pred ----CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----c-CCeEEEeecCccccCCCCCCCCCC
Q 013467 179 ----LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----V-GARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 179 ----~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~-g~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.++|+||||||....... .+++...+++|+.++.++++++.. . +.+||++||...++
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 164 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAG---------- 164 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTC----------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecccC----------
Confidence 259999999996433221 123567899999999999998754 2 34899999987321
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
......|+.+|...+.+++.++++. |+++++||||+++|+............+........
T Consensus 165 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------- 228 (303)
T 1yxm_A 165 -------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI--------- 228 (303)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS---------
T ss_pred -------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC---------
Confidence 1223679999999999999887764 899999999999998421010100011111111111
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
....+.+++|+|+++++++..+. .| .+++.+|..+
T Consensus 229 p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 229 PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267 (303)
T ss_dssp TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCeec
Confidence 11247889999999999997542 35 7888877543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=173.63 Aligned_cols=214 Identities=14% Similarity=0.061 Sum_probs=152.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-eCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-DNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
++++|+||||+|+||++++++|+++|++|+++ +|+.. ..+.....+ ...++.++.+|+.+.. +.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKK-AALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999997 55422 111221111 2346888999987752 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+||||||........ ++++..+++|+.++.++++++ ++.+. +||++||...+
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~---------------- 145 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI---------------- 145 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT----------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC----------------
Confidence 689999999965433222 236678999999999998887 44455 99999998765
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++....... ...+........+ ...+
T Consensus 146 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p---------~~r~ 214 (258)
T 3oid_A 146 RYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN--REDLLEDARQNTP---------AGRM 214 (258)
T ss_dssp SBCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT--HHHHHHHHHHHCT---------TSSC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc--CHHHHHHHHhcCC---------CCCC
Confidence 233344789999999999999988764 8999999999998875321111 1222233322221 2357
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
.+++|+|+++++++..+. .| .+++.+|..
T Consensus 215 ~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 247 (258)
T 3oid_A 215 VEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRS 247 (258)
T ss_dssp BCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHhCcccCCccCCEEEECCCcc
Confidence 789999999999998653 35 888887754
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=173.42 Aligned_cols=212 Identities=16% Similarity=0.089 Sum_probs=150.8
Q ss_pred CcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------
Q 013467 110 LGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 110 ~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------ 177 (442)
+....++|+|+||||+|+||++++++|+++|++|++++|+.... ...+..+.+|+.+..
T Consensus 8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (269)
T 3vtz_A 8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD---------VNVSDHFKIDVTNEEEVKEAVEKTTKK 78 (269)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C---------TTSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc---------cCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 34456678999999999999999999999999999999864322 124567788887652
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|+||||||........ +.+...+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 145 (269)
T 3vtz_A 79 YGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA------------- 145 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc-------------
Confidence 23799999999975543222 2356788999999999888764 3455 999999988763
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCcc-------CCCchHHHHHHHHHcCCCcEEec
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCI-------DDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+. ++++.+|+||.|.++.... ............+....
T Consensus 146 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 216 (269)
T 3vtz_A 146 ---ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH------ 216 (269)
T ss_dssp ---BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS------
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC------
Confidence 22334789999999999999998876 8999999999998763100 00011112222222211
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
....+.+++|+|+++++++..+. .| .+++.+|.
T Consensus 217 ---p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 217 ---PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGL 253 (269)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCc
Confidence 22356789999999999997543 35 78888774
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=176.83 Aligned_cols=211 Identities=17% Similarity=0.136 Sum_probs=149.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeC-CCCCCccccccccC---CCceeEEecccccc----c--------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN-FFTGRKENVMHHFG---NPNFELIRHDVVEP----L-------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r-~~~~~~~~~~~~~~---~~~v~~~~~D~~~~----~-------- 177 (442)
+++++|+||||+|+||++++++|+++|++|++++| +.. ..+.....+. ..++.++.+|+.+. .
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG-AAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC 87 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence 34579999999999999999999999999999998 422 1111111110 24678888998775 2
Q ss_pred ----cCCCCEEEEecccCCCCccc---------------CChhHHHHHhHHHHHHHHHHHHHc---C-------CeEEEe
Q 013467 178 ----LLEVDQIYHLACPASPVHYK---------------FNPVKTIKTNVVGTLNMLGLAKRV---G-------ARFLLT 228 (442)
Q Consensus 178 ----~~~~d~Vih~A~~~~~~~~~---------------~~~~~~~~~nv~gt~~ll~~a~~~---g-------~r~i~i 228 (442)
+.++|+||||||........ +.+...+++|+.++.++++++... + .+||++
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i 167 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL 167 (276)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence 12699999999975432221 345678999999999999988762 2 489999
Q ss_pred ecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHH
Q 013467 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNF 305 (442)
Q Consensus 229 SS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~ 305 (442)
||...+. +......|+.+|.+.+.+++.++.+. |+++.+|+||+++++ .. +...+
T Consensus 168 sS~~~~~----------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~-----~~~~~ 225 (276)
T 1mxh_A 168 CDAMTDL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA-----MPQET 225 (276)
T ss_dssp CCGGGGS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS-----SCHHH
T ss_pred CchhhcC----------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc-----CCHHH
Confidence 9988762 22234689999999999999987764 899999999999998 21 11223
Q ss_pred HHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 306 VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
........++ + +.+.+++|+|+++++++..+. .| .+++.+|.
T Consensus 226 ~~~~~~~~p~-----~---r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 226 QEEYRRKVPL-----G---QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHHHTTCTT-----T---SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHhcCCC-----C---CCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 3333322111 1 127889999999999997542 35 77877663
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=178.77 Aligned_cols=215 Identities=16% Similarity=0.121 Sum_probs=127.5
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------c
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~ 178 (442)
+..++++|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4456789999999999999999999999999999998643222111111 12356788999987752 2
Q ss_pred CCCCEEEEecccCCCC-------cccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV-------HYKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~-------~~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.++|+||||||..... ...+.+...+++|+.++.++++++ ++.+. +||++||...|.
T Consensus 85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 153 (253)
T 3qiv_A 85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL----------- 153 (253)
T ss_dssp SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------------
T ss_pred CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC-----------
Confidence 3799999999973211 112336678999999966666554 45555 899999987651
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
....|+.+|.+.+.+++.++.+. |+++.+++||.++++.... .....+...+.++. .
T Consensus 154 --------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---~~~~~~~~~~~~~~---------~ 213 (253)
T 3qiv_A 154 --------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRT---TTPKEMVDDIVKGL---------P 213 (253)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhh---cCcHHHHHHHhccC---------C
Confidence 12469999999999999998875 8999999999999875311 01111222222221 2
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
...+..++|+|+++++++..+. .| .|++.+|..+
T Consensus 214 ~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 214 LSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQII 251 (253)
T ss_dssp ------CCHHHHHHHHHHSGGGTTCCSCEEEC------
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCeec
Confidence 2345567999999999997543 35 8888877654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=174.10 Aligned_cols=218 Identities=11% Similarity=0.018 Sum_probs=152.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
+++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEE-AKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999986432221 11111 1246888999997752 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH-----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA-----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a-----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||....... .++++..+++|+.++.++++++ ++.+. ++|++||...+.
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 148 (257)
T 3imf_A 83 RIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD-------------- 148 (257)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS--------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc--------------
Confidence 69999999996543222 2246778999999999999887 33333 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++...... .....+........ ...
T Consensus 149 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~---------p~~ 216 (257)
T 3imf_A 149 --AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WISEEMAKRTIQSV---------PLG 216 (257)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------CCSHHHHTTS---------TTC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhc-ccCHHHHHHHHhcC---------CCC
Confidence 2223468999999999999887754 4899999999999987532100 00011111112211 223
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
.+...+|+|+++++++..+. .| .+++.+|..++
T Consensus 217 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 217 RLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 57789999999999997653 45 78888776543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=182.61 Aligned_cols=217 Identities=15% Similarity=0.129 Sum_probs=155.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
...++++|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999986432222222111 2347888999997752
Q ss_pred cCCCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+.++|+||||||...... ..++++..+++|+.++.++++++... +.+||++||...+..
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------- 189 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG------------- 189 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC-------------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC-------------
Confidence 236999999999754321 22346788999999999999999764 238999999887632
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||.|+++..... .-......+ ........
T Consensus 190 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~---------~~~~p~~r 254 (291)
T 3ijr_A 190 ---NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS---FDEKKVSQF---------GSNVPMQR 254 (291)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH---SCHHHHHHT---------TTTSTTSS
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc---CCHHHHHHH---------HccCCCCC
Confidence 2233679999999999999988765 89999999999998742100 001111111 11222345
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+.+++|+|+++++++..+. .| .+++.+|..
T Consensus 255 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 255 PGQPYELAPAYVYLASSDSSYVTGQMIHVNGGVI 288 (291)
T ss_dssp CBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSCC
T ss_pred CcCHHHHHHHHHHHhCCccCCCcCCEEEECCCcc
Confidence 7789999999999997643 45 788877643
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=175.74 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=154.0
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------c
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 178 (442)
.+..++++|+||||+|+||++++++|+++|++|++++|+.....+ ..... ..++.++.+|+.+.. +
T Consensus 22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (277)
T 4dqx_A 22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVR-VANEI-GSKAFGVRVDVSSAKDAESMVEKTTAKW 99 (277)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 345677899999999999999999999999999999986432211 11111 246788899987752 2
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||........ +.++..+++|+.|+.++++++. +.+. ++|++||...+.
T Consensus 100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 165 (277)
T 4dqx_A 100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS-------------- 165 (277)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc--------------
Confidence 3699999999975443222 2466788999999998888774 3444 999999987662
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++.... ................ ...
T Consensus 166 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 234 (277)
T 4dqx_A 166 --AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNAR---------AVM 234 (277)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTT---------STT
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhc---------Ccc
Confidence 23334789999999999999987764 8999999999998753100 0000001111112221 223
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
..+.+++|+|+++++++.... .| .+++.+|..+
T Consensus 235 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 271 (277)
T 4dqx_A 235 DRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSI 271 (277)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSS
T ss_pred cCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhh
Confidence 357789999999999997653 45 7888877554
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=174.79 Aligned_cols=210 Identities=15% Similarity=0.052 Sum_probs=147.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------LE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~~ 180 (442)
++|+|+||||+|+||++++++|+++|++|++++|+.. +.....+ ...++.++.+|+.+.. + .+
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP---APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC---HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999999999999999998643 1111111 1245778888987641 2 27
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 144 (255)
T 2q2v_A 80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG--------------- 144 (255)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC---------------
Confidence 9999999997543221 2246678999999877766654 56665 9999999876532
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchH---HHH---H----HHHHcCCCcEEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVV---SNF---V----AQALRKEPLTVY 318 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~---~~~---~----~~~~~~~~~~~~ 318 (442)
......|+.+|...+.+++.++.+. |+++.+|+||+++++... ... ... . ..+.
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~-------- 211 (255)
T 2q2v_A 145 -STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ----KQIDDRAANGGDPLQAQHDLL-------- 211 (255)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH----HHHHHHHHHTCCHHHHHHHHH--------
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh----hhcccccccccchHHHHHHHH--------
Confidence 1223679999999999999988764 899999999999986421 010 000 0 1110
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
........+++++|+|+++++++..+. .| .|++.+|.
T Consensus 212 ~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 212 AEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGW 252 (255)
T ss_dssp TTTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred hccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCc
Confidence 111223468899999999999987542 35 78887764
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=183.22 Aligned_cols=217 Identities=15% Similarity=0.016 Sum_probs=151.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
+++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR-TVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999986432111 11111 1246778888887641 23
Q ss_pred CCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||.... .. ..++++..+++|+.++.++++++. +.+. +||++||...|.
T Consensus 91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 156 (260)
T 2zat_A 91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH-------------- 156 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC--------------
Confidence 79999999996431 11 122366789999999998888764 4565 999999988763
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+. |+++.+++||.+.++........ .......... .....
T Consensus 157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~---------~~~~~ 223 (260)
T 2zat_A 157 --PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMD--KARKEYMKES---------LRIRR 223 (260)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSS--HHHHHHHHHH---------HTCSS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccC--hHHHHHHHhc---------CCCCC
Confidence 22234689999999999999987764 89999999999988742100000 0000111110 11235
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
+.+++|+|+++++++..+. .| .+++.+|...+
T Consensus 224 ~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 224 LGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp CBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred CCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 7889999999999987653 45 89999887665
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=176.77 Aligned_cols=218 Identities=15% Similarity=0.125 Sum_probs=148.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~------------ 177 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA-SKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999986432111 11111 1346788899987752
Q ss_pred cCCCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
+.++|+||||||.... .. ..++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 157 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------ 157 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc------------
Confidence 1268999999997543 11 12346778999999988665544 45554 999999987652
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC----CCchHHHHHHHHHcCCCcEEecC
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID----DGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++..... ...........+....
T Consensus 158 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 226 (267)
T 1iy8_A 158 ----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN------- 226 (267)
T ss_dssp ----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC-------
T ss_pred ----CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC-------
Confidence 2223468999999999999988765 489999999999988632100 0001111111122111
Q ss_pred CceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCcc
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGEF 357 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~ 357 (442)
....+.+.+|+|+++++++..+ ..| .+++.+|...
T Consensus 227 --p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 227 --PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 265 (267)
T ss_dssp --TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred --CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 1234778999999999998754 245 7888776543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=176.07 Aligned_cols=220 Identities=16% Similarity=0.109 Sum_probs=151.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC---------Ccc---cccccc--CCCceeEEeccccccc--
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---------RKE---NVMHHF--GNPNFELIRHDVVEPL-- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~---------~~~---~~~~~~--~~~~v~~~~~D~~~~~-- 177 (442)
.++++++||||+|+||++++++|+++|++|++++|+... ..+ .....+ ...++.++.+|+.+..
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 456799999999999999999999999999999984221 111 111111 2346788899987752
Q ss_pred ----------cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcC-C-eEEEeecCccccCC
Q 013467 178 ----------LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVG-A-RFLLTSTSEVYGDP 237 (442)
Q Consensus 178 ----------~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g-~-r~i~iSS~~vy~~~ 237 (442)
+.++|+||||||....... .++++..+++|+.++.++++++ ++.+ . +||++||...+.
T Consensus 93 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 170 (280)
T 3pgx_A 93 RELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK-- 170 (280)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc--
Confidence 2369999999997654332 2346678899999999998887 3333 3 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHH-HcCC
Q 013467 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQA-LRKE 313 (442)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~ 313 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++... .......+... ....
T Consensus 171 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---~~~~~~~~~~~~~~~~ 233 (280)
T 3pgx_A 171 --------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE---PEAMMEIFARHPSFVH 233 (280)
T ss_dssp --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC---HHHHHHHHHHCGGGGG
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc---hhhhhhhhhcCchhhh
Confidence 2223468999999999999998876 5899999999999998641 11111111110 0001
Q ss_pred CcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 314 PLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 314 ~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+... ..... .+.+++|+|+++++++..+. .| .+++.+|
T Consensus 234 ~~~~~-~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 276 (280)
T 3pgx_A 234 SFPPM-PVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKG 276 (280)
T ss_dssp GSCCB-TTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTT
T ss_pred hhhhc-ccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 11111 11122 58899999999999997543 35 7777765
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=176.77 Aligned_cols=215 Identities=14% Similarity=0.057 Sum_probs=142.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
..+++++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+.. +.
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999999999974332222222111 2357888999998752 12
Q ss_pred CCCEEEEecccCC--CCc----ccCChhHHHHHhHHHHHHHHHHHHH----cC---C-eEEEeecCccccCCCCCCCCCC
Q 013467 180 EVDQIYHLACPAS--PVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VG---A-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 180 ~~d~Vih~A~~~~--~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g---~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
++|+||||||... ... ..++++..+++|+.++.++++++.. .+ . +||++||...+.
T Consensus 107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------- 176 (280)
T 4da9_A 107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM---------- 176 (280)
T ss_dssp CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------------
T ss_pred CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc----------
Confidence 6999999999732 111 2234677889999999988887643 22 3 899999987652
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++.... ........... ...
T Consensus 177 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~--------~~~ 238 (280)
T 4da9_A 177 ------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAA----VSGKYDGLIES--------GLV 238 (280)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------------
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhh----cchhHHHHHhh--------cCC
Confidence 2223367999999999999998876 58999999999998875311 11111111110 011
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
....+..++|+|+++++++.... .| .+++.+|..
T Consensus 239 p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 239 PMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp ---CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred CcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 23467889999999999998764 35 788877643
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=176.15 Aligned_cols=207 Identities=16% Similarity=0.113 Sum_probs=147.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc-------CCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL-------LEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~-------~~~ 181 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+. ..+.++.+|+.+. .+ .++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKA-MAAELA-DAARYVHLDVTQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHhh-cCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 356799999999999999999999999999999986422111 111111 2477888998764 22 279
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||....... .+++...+++|+.++.+++++ +++.+. +||++||...+..
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 146 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG---------------- 146 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC----------------
Confidence 999999997543221 224667899999999666554 455565 9999999887632
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+ .|+++++||||+++++.... ....+. ......+.+
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------------~~~~~~----~~~~~~~~~ 208 (260)
T 1nff_A 147 TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW--------------VPEDIF----QTALGRAAE 208 (260)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT--------------SCTTCS----CCSSSSCBC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcccc--------------chhhHH----hCccCCCCC
Confidence 122367999999999999998776 58999999999999875310 000000 011235788
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
++|+|+++++++..+. .| .+++.+|..
T Consensus 209 ~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 209 PVEVSNLVVYLASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 9999999999987542 35 788887744
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=174.90 Aligned_cols=210 Identities=14% Similarity=0.036 Sum_probs=146.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-eCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-DNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+|+|+||||+|+||++++++|+++|++|+++ +|+.. ..+.....+ ...++.++.+|+.+.. +.+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAK-AAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH-HHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3589999999999999999999999999995 56422 111111111 1246778889987642 226
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .+++...+++|+.++.++++++.. .+. +||++||...+..
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 144 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG--------------- 144 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------------
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCC---------------
Confidence 9999999997543221 234667899999999999888754 355 9999999865421
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++++ .|+++.++|||+++++.... +...+........+ ...++
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~~~ 210 (244)
T 1edo_A 145 -NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK----LGEDMEKKILGTIP---------LGRTG 210 (244)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT----TCHHHHHHHHTSCT---------TCSCB
T ss_pred -CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhh----cChHHHHHHhhcCC---------CCCCC
Confidence 112367999999999999988766 48999999999999864211 11222222222211 13578
Q ss_pred CHHHHHHHHHHHHcCCC----Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH----VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~----~g-~~~i~~~~ 355 (442)
+++|+|++++.++..+. .| .|++.+|.
T Consensus 211 ~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 211 QPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp CHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 99999999999985432 35 78887763
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=173.70 Aligned_cols=214 Identities=14% Similarity=0.067 Sum_probs=154.5
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
+..++++|+||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+..
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999885433322222211 2346788999997752
Q ss_pred cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|+||||||....... .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 170 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM------------- 170 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC-------------
Confidence 2369999999997654322 2346778999999999998876 33454 999999977542
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|.++... ... ........+ ..
T Consensus 171 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~----~~~---~~~~~~~~p---------~~ 231 (269)
T 4dmm_A 171 ---GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS----ELA---AEKLLEVIP---------LG 231 (269)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC----HHH---HHHHGGGCT---------TS
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc----ccc---HHHHHhcCC---------CC
Confidence 2223468999999999999988775 4899999999999987531 111 122222221 23
Q ss_pred eccCHHHHHHHHHHHHcCCC----Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH----VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~----~g-~~~i~~~~~~ 357 (442)
.+..++|+|+++++++.++. .| .+++.+|..+
T Consensus 232 r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 232 RYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred CCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 56789999999999998742 35 8888877544
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=176.62 Aligned_cols=209 Identities=12% Similarity=0.067 Sum_probs=143.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-eCCCCCCcccccccc--CCCceeE-Eeccccccc------------cC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-DNFFTGRKENVMHHF--GNPNFEL-IRHDVVEPL------------LL 179 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~-~~~D~~~~~------------~~ 179 (442)
||+|+||||+|+||++++++|+++|++|+++ +|+... .+.....+ ...++.+ +.+|+.+.. +.
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREK-AEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHH-HHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999998 664221 11111111 1234555 888887642 24
Q ss_pred CCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHH----HHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNML----GLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll----~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+||||||...... ..+++...+++|+.++.+++ +.+++.+. +||++||...+..
T Consensus 80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 145 (245)
T 2ph3_A 80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG-------------- 145 (245)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC--------------
Confidence 7999999999754322 12246678999999955554 45556675 9999999864421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|.+.+.+++.++++. |++++++|||+++++.... ....+........+ ...+
T Consensus 146 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~~ 210 (245)
T 2ph3_A 146 --NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER----LPQEVKEAYLKQIP---------AGRF 210 (245)
T ss_dssp --CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHHTCT---------TCSC
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh----cCHHHHHHHHhcCC---------CCCC
Confidence 1123679999999999999887764 8999999999999874211 11222222222221 1357
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++++|+|++++.++..+. .| .|++.+|
T Consensus 211 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 241 (245)
T 2ph3_A 211 GRPEEVAEAVAFLVSEKAGYITGQTLCVDGG 241 (245)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 899999999999997642 35 7888765
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=172.85 Aligned_cols=211 Identities=15% Similarity=0.127 Sum_probs=146.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+|+||||+|+||++++++|+++|++|++++|+..... .....+ ..++.++.+|+.+.. +.++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA-ATAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34679999999999999999999999999999998642211 111111 235778888987642 1279
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHH----HHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNM----LGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~l----l~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||....... .++++..+++|+.++.++ +..+++.+. +||++||...+. +
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 144 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM----------------G 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------------C
Confidence 999999997543221 224677899999998754 445556665 999999987652 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc-
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ- 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 328 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++.. .. . .......+........+.
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~----~-~~~~~~~~~~~~p~~~~~~ 211 (254)
T 1hdc_A 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT--------AE----T-GIRQGEGNYPNTPMGRVGN 211 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HH----H-TCCCSTTSCTTSTTSSCB-
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc--------cc----c-chhHHHHHHhcCCCCCCCC
Confidence 223468999999999999998775 489999999999988531 11 1 110000000111122467
Q ss_pred CHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
+.+|+|+++++++..+ ..| .+++.+|.
T Consensus 212 ~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 212 EPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 8999999999999764 235 77777664
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=178.69 Aligned_cols=231 Identities=16% Similarity=0.071 Sum_probs=147.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc------CCCceeEEeccccccc-----c----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF------GNPNFELIRHDVVEPL-----L---- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~------~~~~v~~~~~D~~~~~-----~---- 178 (442)
+++++|+||||+|+||++++++|+++|++|++.+|+...+.......+ ...++.++.+|+.+.. +
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 345789999999999999999999999999999997544432211111 1346888999997752 1
Q ss_pred ---CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 179 ---LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 ---~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.++|+||||||....... .+++...+++|+.|+.++++++ ++.+. ++|++||...+..
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~---------- 152 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG---------- 152 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC----------
Confidence 279999999996543222 2235678999999999999988 56665 9999999876532
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC---CchHHHHHHHHHcCCCcEEecC
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD---GRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
.......|+.||.+.|.+++.++.+ .|+++++|+||.+.++...... ....... .............+
T Consensus 153 -----~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 226 (324)
T 3u9l_A 153 -----TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQ-AEYEAGPNAGLGEE 226 (324)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHH-HHHHHTTTTTHHHH
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHH-HhhccccccCCHHH
Confidence 1112367999999999999998876 4899999999999865321110 0001111 11111000000000
Q ss_pred Cce-----eEeccCHHHHHHHHHHHHcCCCC--ccEEecCCCccCHH
Q 013467 321 GKQ-----TRSFQFVSDLVEGLMRLMEGEHV--GPFNLGNPGEFTML 360 (442)
Q Consensus 321 ~~~-----~~~~v~v~Dva~ai~~~l~~~~~--g~~~i~~~~~~s~~ 360 (442)
... ..+..+++|+|++++.+++.+.. ....+.++....+.
T Consensus 227 ~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~~~ 273 (324)
T 3u9l_A 227 IKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGAD 273 (324)
T ss_dssp HHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchHHH
Confidence 000 01225789999999999998742 33444455455543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=170.10 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=148.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------cCCCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--------LLEVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vi 185 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+.... +... . ..++.++.+|+.+.. +.++|+||
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv 79 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL-QELE-K--YPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-GGGG-G--STTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH-h--ccCceEEEeeCCCHHHHHHHHHHhCCCCEEE
Confidence 3467999999999999999999999999999999864221 1111 1 136788889987652 34799999
Q ss_pred EecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 186 h~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
||||....... .++++..+++|+.++.++++++. +.+. ++|++||...+... + ...
T Consensus 80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~-~~~ 144 (246)
T 2ag5_A 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG--------------V-VNR 144 (246)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC--------------C-TTB
T ss_pred ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC--------------C-CCC
Confidence 99997544322 12366788999999999988874 3455 99999998765211 0 023
Q ss_pred ChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
..|+.+|.+.+.+++.++.+. |+++.+||||+++++...... ..........+....+ ...+.+.+
T Consensus 145 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 215 (246)
T 2ag5_A 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK---------TGRFATAE 215 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT---------TSSCEEHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC---------CCCCCCHH
Confidence 679999999999999987764 899999999999987421000 0000111222222211 12467899
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
|+|+++++++..+. .| .+++.+|
T Consensus 216 dvA~~v~~l~s~~~~~~tG~~i~vdgG 242 (246)
T 2ag5_A 216 EIAMLCVYLASDESAYVTGNPVIIDGG 242 (246)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred HHHHHHHHHhCccccCCCCCEEEECCC
Confidence 99999999997542 35 7777765
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=173.36 Aligned_cols=217 Identities=14% Similarity=0.058 Sum_probs=148.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDE-CLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999986432111 11111 1346788889987641 2
Q ss_pred -CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 -LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 -~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||....... .++++..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------ 164 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA------------ 164 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC------------
Confidence 579999999997543222 22466788999999999998873 4455 9999999887632
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCch--HHHHHHHHHcCCCcEEecCCce
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRV--VSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||+++++......... ...+........+
T Consensus 165 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p--------- 231 (273)
T 1ae1_A 165 ----LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP--------- 231 (273)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST---------
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC---------
Confidence 2234689999999999999987764 899999999999987531100000 0111222222111
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
...+.+.+|+|+++++++..+. .| .+++.+|.
T Consensus 232 ~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 232 MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 267 (273)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCc
Confidence 1247789999999999986532 45 78887764
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=178.37 Aligned_cols=225 Identities=12% Similarity=-0.040 Sum_probs=156.8
Q ss_pred cCCCCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc----------
Q 013467 111 GLKRKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL---------- 177 (442)
Q Consensus 111 ~~~~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~---------- 177 (442)
....++|+|+||||+ |+||++++++|+++|++|++++|... ..+..... .....+.++.+|+.+..
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh-hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 445667899999999 99999999999999999999998632 11111111 11235788899987752
Q ss_pred --cCCCCEEEEecccCCC----C-----cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCC
Q 013467 178 --LLEVDQIYHLACPASP----V-----HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 178 --~~~~d~Vih~A~~~~~----~-----~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~ 243 (442)
+.++|+||||||.... . ...+++...+++|+.++.++++++... +.++|++||...+.
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 159 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER-------- 159 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc--------
Confidence 2368999999997543 1 122346778999999999999998764 23899999987652
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|++.+.+++.++.+. |+++.+|+||.|..+... .......+........++
T Consensus 160 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~--~~~~~~~~~~~~~~~~~~----- 224 (271)
T 3ek2_A 160 --------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAAS--GIKSFGKILDFVESNSPL----- 224 (271)
T ss_dssp --------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----C--CCHHHHHHHHHHHHHSTT-----
T ss_pred --------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhh--cccchHHHHHHHHhcCCc-----
Confidence 23334789999999999999987754 899999999999886531 111122333333332222
Q ss_pred CceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCccCHHHHH
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGEFTMLELA 363 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~s~~dl~ 363 (442)
..+...+|+|+++++++... ..| .+++.+|...++.++.
T Consensus 225 ----~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 225 ----KRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC-
T ss_pred ----CCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhh
Confidence 24667899999999999754 245 8999888777665544
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=176.63 Aligned_cols=213 Identities=12% Similarity=0.013 Sum_probs=147.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD-SVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH-HHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 345679999999999999999999999999999887532211 111111 1346788899987651 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .+++...+++|+.++.++++++. +.+. +||++||...+..
T Consensus 120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------- 186 (285)
T 2c07_A 120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG------------- 186 (285)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC-------------
Confidence 369999999997543221 22466789999999888777664 4565 9999999875421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.++.+. |+++.+++||.+.++.... ....+........+ ...
T Consensus 187 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~ 250 (285)
T 2c07_A 187 ---NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----ISEQIKKNIISNIP---------AGR 250 (285)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCT---------TSS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh----cCHHHHHHHHhhCC---------CCC
Confidence 1123679999999999999887654 8999999999999875311 11222222222211 124
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+++++|+|++++.++..+. .| .+++.+|.
T Consensus 251 ~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 251 MGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 7899999999999997642 45 78887663
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=174.02 Aligned_cols=215 Identities=18% Similarity=0.119 Sum_probs=151.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++|+||||+|+||++++++|+++|++|+++++....+........ ...++.++.+|+.+.. +
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV 89 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence 3456799999999999999999999999999999854443332222211 2346788899987641 2
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||........ ++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 90 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 155 (256)
T 3ezl_A 90 GEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK-------------- 155 (256)
T ss_dssp CCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG--------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc--------------
Confidence 3689999999976543222 346678999999988887765 45565 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+++||.+.++.... ....+...+....++ ..
T Consensus 156 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~~~---------~~ 220 (256)
T 3ezl_A 156 --GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----IRPDVLEKIVATIPV---------RR 220 (256)
T ss_dssp --SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHHHSTT---------SS
T ss_pred --CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc----cCHHHHHHHHhcCCC---------CC
Confidence 2233478999999999999988776 48999999999998764211 112233333332221 24
Q ss_pred ccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 327 FQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
+.+.+|+|+++++++..+ ..| .+++.+|..
T Consensus 221 ~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~ 254 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASEESGFSTGADFSLNGGLH 254 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred CcCHHHHHHHHHHHhCCcccCCcCcEEEECCCEe
Confidence 667999999999998654 235 788887754
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=175.20 Aligned_cols=216 Identities=15% Similarity=0.025 Sum_probs=152.2
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++|+||||+ |+||++++++|+++|++|++++|+. ...+...... ......++.+|+.+.. +
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 345789999999 9999999999999999999999865 2211111110 0123467888887641 2
Q ss_pred CCCCEEEEecccCCC----C-----cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP----V-----HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~----~-----~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.++|+||||||.... . ...+++...+++|+.++.++++++... +.+||++||...+.
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 154 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 154 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence 268999999997542 1 122346778999999999999999764 23899999977652
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++..... .....+...+....++
T Consensus 155 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~p~-------- 219 (265)
T 1qsg_A 155 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI--KDFRKMLAHCEAVTPI-------- 219 (265)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS--TTHHHHHHHHHHHSTT--------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc--cccHHHHHHHHhcCCC--------
Confidence 22234689999999999999988764 89999999999999853211 1122333333222221
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
..+.+++|+|+++++++..+. .| .+++.+|..+
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~ 256 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSI 256 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGG
T ss_pred -CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCcCC
Confidence 246789999999999987543 35 7888877543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-20 Score=173.03 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=148.4
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------c
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 178 (442)
+..++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACAD-TATRLSAYGDCQAIPADLSSEAGARRLAQALGELS 103 (276)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999986432111 11111 1126778888887641 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC-----CeEEEeecCccccCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG-----ARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g-----~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.++|+||||||....... .++++..+++|+.++.++++++. +.+ .+||++||...+..
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~--------- 174 (276)
T 2b4q_A 104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA--------- 174 (276)
T ss_dssp SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC---------
Confidence 369999999997543221 23367789999999988877663 333 48999999876632
Q ss_pred CCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHc--CCCcEEec
Q 013467 246 YWGNVNPIGVRS-CYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR--KEPLTVYG 319 (442)
Q Consensus 246 ~~~~~~~~~~~~-~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 319 (442)
..... .|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++... ............ ..+
T Consensus 175 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p----- 238 (276)
T 2b4q_A 175 -------MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR----HIANDPQALEADSASIP----- 238 (276)
T ss_dssp -------CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTH----HHHHCHHHHHHHHHTST-----
T ss_pred -------CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchh----hcchhHHHHHHhhcCCC-----
Confidence 11124 7999999999999998765 3899999999999887421 111111111111 111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
...+.+.+|+|+++++++..+ ..| .+++.+|.
T Consensus 239 ----~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 239 ----MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp ----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ----CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 124778999999999999764 245 77777663
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=175.12 Aligned_cols=221 Identities=15% Similarity=0.156 Sum_probs=157.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+++||||+|+||++++++|+++|++|++++|+..... .....+ ..++.++.+|+.+.. +.++
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIA-RIREEF-GPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 45679999999999999999999999999999998633211 111111 246788999987752 2369
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|++|||||....... .++++..+++|+.++.++++++... +.++|++||...+. +..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 147 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------------GHP 147 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS----------------BCT
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC----------------CCC
Confidence 999999997654322 2346778999999999999998753 23899999987652 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
....|+.+|.+.+.+++.++.+. |+++.+|+||.+.++...... ......+........+ ...+.+
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p---------~~r~~~ 218 (255)
T 4eso_A 148 GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP---------MKRNGT 218 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHST---------TSSCBC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCC---------CCCCcC
Confidence 34789999999999999988764 899999999999987532111 1111222222222111 224668
Q ss_pred HHHHHHHHHHHHcCC--CCc-cEEecCCCccCHHH
Q 013467 330 VSDLVEGLMRLMEGE--HVG-PFNLGNPGEFTMLE 361 (442)
Q Consensus 330 v~Dva~ai~~~l~~~--~~g-~~~i~~~~~~s~~d 361 (442)
.+|+|+++++++... ..| .+++.+|...++.+
T Consensus 219 pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 219 ADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp HHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTBCC
T ss_pred HHHHHHHHHHHcCcCcCccCCEEEECCCccccCcC
Confidence 999999999988752 235 88888887665543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=177.15 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=153.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999985432221111110 1346888999997752 2
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||........ +.++..+++|+.++.++++++. +.+ .++|++||...+.
T Consensus 97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 163 (266)
T 4egf_A 97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------- 163 (266)
T ss_dssp TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc-------------
Confidence 3699999999976543222 2366789999999999988774 333 3899999988662
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||+|..+....... ............+ ..
T Consensus 164 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p---------~~ 229 (266)
T 4egf_A 164 ---PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG--DEAKSAPMIARIP---------LG 229 (266)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC--SHHHHHHHHTTCT---------TS
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc--ChHHHHHHHhcCC---------CC
Confidence 2333478999999999999998876 48999999999998763210000 0112222222221 23
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
.+..++|+|+++++++.... .| .+++.+|..
T Consensus 230 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYT 264 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhcCccCcEEEECCCcc
Confidence 46779999999999997542 35 788887744
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-20 Score=170.10 Aligned_cols=213 Identities=18% Similarity=0.148 Sum_probs=144.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC-CCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+++++|+||||+|+||++++++|+++|++|++++|+. ....+.+. . ...++.++.+|+.+.. +.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-N-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-H-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH-h-cCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 3467999999999999999999999999999999864 21111111 1 1246788899987652 247
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.++.+++++ +++.+. +||++||...+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (249)
T 2ew8_A 83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------------- 146 (249)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc----------------
Confidence 9999999997543221 223667899999998888777 455665 999999988763
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||++.++.... ...... ...... .. .....+.
T Consensus 147 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~~~~-~~~~~~-~~------~~~~~~~ 215 (249)
T 2ew8_A 147 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA---SALSAM-FDVLPN-ML------QAIPRLQ 215 (249)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------C-TT------SSSCSCC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchh---ccccch-hhHHHH-hh------CccCCCC
Confidence 22234689999999999999987764 8999999999998874210 000000 000110 00 1123578
Q ss_pred CHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
+.+|+|+++++++..+ ..| .+++.+|.
T Consensus 216 ~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 216 VPLDLTGAAAFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp CTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred CHHHHHHHHHHHcCcccCCCCCcEEEECCCc
Confidence 8999999999999754 245 67777653
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=180.14 Aligned_cols=218 Identities=14% Similarity=0.042 Sum_probs=151.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ..++.++.+|+.+.. +.+
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADA-AATKI-GCGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHH-CSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHc-CCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999999986432221 11122 346788899987752 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.++.++++++.. .+. ++|++||...+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 167 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV---------------- 167 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc----------------
Confidence 9999999997644322 234677899999999998887743 454 899999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC---CceeE
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD---GKQTR 325 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++.. ...... ..+........ .....
T Consensus 168 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (277)
T 3gvc_A 168 AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ--------QTAMAM-FDGALGAGGARSMIARLQG 238 (277)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHHHTC-C------CCHHHHHHHHHS
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH--------HHhhhc-chhhHHHHhhhhhhhcccc
Confidence 2233468999999999999988776 589999999999988631 111000 00000000000 01123
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+.+++|+|+++++++..+. .| .+++.+|...
T Consensus 239 r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~ 274 (277)
T 3gvc_A 239 RMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIA 274 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchh
Confidence 57789999999999997643 35 7888877544
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=169.72 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=144.9
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEE
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQI 184 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~V 184 (442)
....++++|+||||+|+||++++++|+++|++|++++|+. +... .+ ..+.++ +|+.+. .+.++|+|
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~----~~~~-~~--~~~~~~-~D~~~~~~~~~~~~~~iD~l 85 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE----ELLK-RS--GHRYVV-CDLRKDLDLLFEKVKEVDIL 85 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH----HHHH-HT--CSEEEE-CCTTTCHHHHHHHSCCCSEE
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH----HHHH-hh--CCeEEE-eeHHHHHHHHHHHhcCCCEE
Confidence 3456678999999999999999999999999999999864 1111 11 245566 777211 22379999
Q ss_pred EEecccCCCCccc----CChhHHHHHhHHHHHHHHH----HHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLG----LAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~----~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
|||||........ +.+...+++|+.++.++.+ .+++.+. +||++||...+.. ...
T Consensus 86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~~ 149 (249)
T 1o5i_A 86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP----------------IEN 149 (249)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------CTT
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCC----------------CCC
Confidence 9999975433221 2366788999999776654 4556665 9999999887632 223
Q ss_pred CChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHH-HHHcCCCcEEecCCceeEeccCHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVA-QALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
...|+.+|.+.+.+++.++.+ .|+++.+|+||+++++.... ....+.. ...... ....+.+++
T Consensus 150 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------p~~~~~~~~ 216 (249)
T 1o5i_A 150 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE----LLSEEKKKQVESQI---------PMRRMAKPE 216 (249)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH----HSCHHHHHHHHTTS---------TTSSCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc----cchhhHHHHHHhcC---------CCCCCcCHH
Confidence 368999999999999988765 48999999999999875310 0011111 122211 113578999
Q ss_pred HHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 332 DLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 332 Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
|+|+++++++..+ ..| .+++.+|.
T Consensus 217 dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 217 EIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 9999999998754 235 78877663
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=175.98 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=146.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC---CCceeEEeccccccc------------cC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG---NPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~------------~~ 179 (442)
++|+|+||||+|+||++++++|+++|++|++++|+.....+.....+. ..++.++.+|+.+.. +.
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 82 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG 82 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999864320111111110 246778889987752 13
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+||||||....... .++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 83 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 147 (260)
T 1x1t_A 83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV--------------- 147 (260)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc---------------
Confidence 69999999997543221 23467789999999999888774 4455 999999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHH-Hc-CCCcEEe-cCCcee
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQA-LR-KEPLTVY-GDGKQT 324 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||++.++.... ......... .. ......+ ......
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ 222 (260)
T 1x1t_A 148 -ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK----QISALAEKNGVDQETAARELLSEKQPS 222 (260)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHCTT
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHH----hhhhhccccCCchHHHHHHHhhccCCC
Confidence 12234689999999999999887764 8999999999999875311 000000000 00 0000000 000112
Q ss_pred EeccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
..+.+++|+|+++++++..+ ..| .+++.+|.
T Consensus 223 ~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 223 LQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 35789999999999999754 245 77777663
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=174.22 Aligned_cols=202 Identities=14% Similarity=0.104 Sum_probs=146.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+|+||||+|+||++++++|+++|++|++++|.... ..++.++.+|+.+.. +.++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 75 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGSI 75 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 346799999999999999999999999999999986432 235678888887642 1269
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||....... .+++...+++|+.++.++++++.. .+. +||++||...+. +
T Consensus 76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 139 (264)
T 2dtx_A 76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI----------------I 139 (264)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc----------------C
Confidence 999999997543321 234677899999999998888754 344 999999987653 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcC--CcEEEEeeCceeCCCCccCCCchH-------H----HHHHHHHcCCCcEEec
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGAG--VEVRIARIFNTYGPRMCIDDGRVV-------S----NFVAQALRKEPLTVYG 319 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~g--~~~~iiRp~~v~G~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~ 319 (442)
......|+.+|.+.+.+++.++.+.+ +++.+|+||.+.++... ... . .....+...
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------- 208 (264)
T 2dtx_A 140 TKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVR----KAAELEVGSDPMRIEKKISEWGHE------- 208 (264)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHH----HHHHHHHCSCHHHHHHHHHHHHHH-------
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchh----hhhhcccccCchhhHHHHHHHHhc-------
Confidence 22346899999999999999887754 89999999999775310 000 0 111111111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
.....+++++|+|+++++++..+ ..| .+++.+|
T Consensus 209 --~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (264)
T 2dtx_A 209 --HPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGG 245 (264)
T ss_dssp --STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 11235789999999999999764 235 7777766
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=179.55 Aligned_cols=211 Identities=15% Similarity=0.088 Sum_probs=149.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT-TLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 456799999999999999999999999999999986432111 11111 1246788899987642 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc------CC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV------GA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~------g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|+||||||....... .+++...+++|+.++.++++++... +. +||++||...+.
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~------------- 165 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------- 165 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-------------
Confidence 69999999997543222 1235678999999999999986544 54 999999987542
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchH-----------HHHHHHHHcCCC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVV-----------SNFVAQALRKEP 314 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~-----------~~~~~~~~~~~~ 314 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++... ... ......+...
T Consensus 166 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (277)
T 2rhc_B 166 ---GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA----SVREHYSDIWEVSTEEAFDRITAR-- 236 (277)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH----HHHHHHHHHHTCCHHHHHHHHHHH--
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh----hhhhhcccccccchHHHHHHHHhc--
Confidence 22233679999999999999987763 899999999999886320 010 0111111111
Q ss_pred cEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 315 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 315 ~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.....+++++|+|+++++++..+. .| .+++.+|
T Consensus 237 -------~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 237 -------VPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp -------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------CCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 112358899999999999997642 45 7888766
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=175.99 Aligned_cols=221 Identities=14% Similarity=0.063 Sum_probs=155.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAE-LTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHH-HHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999986432211 11111 2346788889987752 23
Q ss_pred CCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||.... .. ..++++..+++|+.|+.++++++. +.+. ++|++||...+..
T Consensus 85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 151 (280)
T 3tox_A 85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA------------- 151 (280)
T ss_dssp CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB-------------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC-------------
Confidence 69999999996532 11 123467789999999999988764 3444 9999999876521
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++..................... ....
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---------p~~r 220 (280)
T 3tox_A 152 --GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH---------ALKR 220 (280)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS---------TTSS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC---------ccCC
Confidence 12234679999999999999988765 899999999999988542100000112222222221 1235
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccCH
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTM 359 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~ 359 (442)
+..++|+|+++++++..+. .| .+++.+|..++.
T Consensus 221 ~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 221 IARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred CcCHHHHHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 7789999999999997653 35 888888866544
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=172.54 Aligned_cols=215 Identities=15% Similarity=0.088 Sum_probs=147.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++++|+||||+|+||++++++|+++|++|++++|+.....+.........++.++.+|+.+.. +.++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567999999999999999999999999999999864321111111111246888999987642 1259
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcC--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||........ +.+...+++|+.++.++++.+ ++.+ .+||++||...+..
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 148 (251)
T 1zk4_A 84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG--------------- 148 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC---------------
Confidence 9999999975432211 235678999999887766654 4445 38999999877632
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHh-----hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHR-----GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~-----~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.|.+++.++. ..|+++.++|||+++++...... ........ . .......
T Consensus 149 -~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~----~~~~~~~~-~-------~~~~~~~ 215 (251)
T 1zk4_A 149 -DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP----GAEEAMSQ-R-------TKTPMGH 215 (251)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST----THHHHHTS-T-------TTCTTSS
T ss_pred -CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC----chhhhHHH-h-------hcCCCCC
Confidence 22346899999999999988765 45899999999999987421100 01111101 1 1111235
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+++++|+|+++++++..+. .| .+++.+|..
T Consensus 216 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 216 IGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHcCcccccccCcEEEECCCcc
Confidence 7899999999999997642 35 788877643
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=175.02 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=146.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+ ..... ..++.++.+|+.+.. +.+
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKE-IAADL-GKDVFVFSANLSDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-CSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999985332211 11111 246888999987752 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .+++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~---------------- 165 (266)
T 3grp_A 102 IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV---------------- 165 (266)
T ss_dssp CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC--------------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC----------------
Confidence 9999999997543322 2346778999999977766655 44565 999999977542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++.... ........+....+ ...+.
T Consensus 166 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p---------~~r~~ 232 (266)
T 3grp_A 166 GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDK----LNEKQKEAIMAMIP---------MKRMG 232 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHT----CCHHHHHHHHTTCT---------TCSCB
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhc----cCHHHHHHHHhcCC---------CCCCc
Confidence 22233689999999999999887763 8999999999998863211 11222233333322 23567
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+.+|+|+++++++..+. .| .+++.+|.
T Consensus 233 ~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 233 IGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 79999999999987653 45 78887663
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-20 Score=173.10 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=152.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLED-VAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999999986432211 11111 2357888999987752 23
Q ss_pred CCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+||||||.... .. ..+++...+++|+.++.++++++. +.+.++|++||...+.
T Consensus 88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 152 (264)
T 3ucx_A 88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH--------------- 152 (264)
T ss_dssp CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC---------------
T ss_pred CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc---------------
Confidence 69999999986422 11 113467789999999999988764 3345999999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-------CchHHHHHHHHHcCCCcEEecC
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-------GRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||+|+++...... ......+......
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 222 (264)
T 3ucx_A 153 -SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAA--------- 222 (264)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHT---------
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhc---------
Confidence 2233468999999999999998876 5899999999999986421000 0000111222222
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
......+.+++|+|+++++++.... .| .+++.+|..
T Consensus 223 ~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 223 GSDLKRLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp TSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred cCCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 2233467889999999999997543 45 888887754
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=172.11 Aligned_cols=201 Identities=16% Similarity=0.147 Sum_probs=129.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----------cCCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----------LLEVD 182 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~d 182 (442)
.++++|+||||+|+||++++++|++ |+.|++++|+.... .......++.++.+|+.+.. +.++|
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHL----AALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHH----HHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHH----HHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 3567999999999999999999987 99999999853221 11112346788888876641 22699
Q ss_pred EEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+||||||........ +.+...+++|+.++.++++++. +.+.++|++||...+. +..
T Consensus 78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 141 (245)
T 3e9n_A 78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG----------------PHP 141 (245)
T ss_dssp EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-------------------------
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc----------------CCC
Confidence 999999976543322 2356788999999888877763 4456899999987663 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+ .|+++.+++||.+.++.. ..+..... .......+++++
T Consensus 142 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~--------~~~~~~~~---------~~~~~~~~~~p~ 204 (245)
T 3e9n_A 142 GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPML--------QGLMDSQG---------TNFRPEIYIEPK 204 (245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------CCGGGSCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchh--------hhhhhhhh---------cccccccCCCHH
Confidence 3478999999999999998775 489999999999988642 11111000 111123578999
Q ss_pred HHHHHHHHHHcCCCCc-cEEec
Q 013467 332 DLVEGLMRLMEGEHVG-PFNLG 352 (442)
Q Consensus 332 Dva~ai~~~l~~~~~g-~~~i~ 352 (442)
|+|+++++++..+..+ ++++.
T Consensus 205 dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 205 EIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEE
T ss_pred HHHHHHHHHHcCCCccceeeeE
Confidence 9999999999988765 67764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-20 Score=173.32 Aligned_cols=218 Identities=13% Similarity=0.009 Sum_probs=150.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------cC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~ 179 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +.
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999999986432221111111 2356888999987752 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH------cCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR------VGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~------~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
++|+||||||........ +.++..+++|+.|+.++++++.. .+. ++|++||...+.
T Consensus 101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~------------- 167 (279)
T 3sju_A 101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ------------- 167 (279)
T ss_dssp SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS-------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc-------------
Confidence 699999999976543222 23667889999999999998754 455 999999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC-------CCchHHHHHHHHHcCCCcEEe
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVY 318 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 318 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|.++..... ...........+....
T Consensus 168 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 239 (279)
T 3sju_A 168 ---GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI----- 239 (279)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC-----
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC-----
Confidence 2233468999999999999998876 489999999999987531000 0000112222222221
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
....+..++|+|+++++++..+. .| .+++.+|.
T Consensus 240 ----p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 240 ----PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp ----TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred ----CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 22356789999999999997653 45 78887763
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=172.13 Aligned_cols=212 Identities=15% Similarity=0.090 Sum_probs=151.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...+.++.+|+.+.. +.+
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQA-ISDYL-GDNGKGMALNVTNPESIEAVLKAITDEFGG 83 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-cccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 3456799999999999999999999999999999986432211 11111 124677888987752 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 147 (248)
T 3op4_A 84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM---------------- 147 (248)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------------
Confidence 9999999997654322 23467789999999999988874 3454 999999977542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+..... ............+ ...+.
T Consensus 148 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~p---------~~r~~ 214 (248)
T 3op4_A 148 GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL----NDEQRTATLAQVP---------AGRLG 214 (248)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS----CHHHHHHHHHTCT---------TCSCB
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc----CHHHHHHHHhcCC---------CCCCc
Confidence 22234789999999999999887753 89999999999988753211 1222222222221 23577
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+++|+|+++++++..+. .| .+++.+|.
T Consensus 215 ~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 215 DPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 89999999999987543 35 78887664
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-20 Score=173.65 Aligned_cols=215 Identities=9% Similarity=0.018 Sum_probs=151.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
+..++++|+||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+..
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999999985433322222221 2347888999987752
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
..++|+||||||........ +++...+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 171 (271)
T 4iin_A 105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER------------- 171 (271)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC-------------
Confidence 13699999999976543222 3467789999999988887763 3454 999999977652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+.... ....+.. .+.......
T Consensus 172 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~---------~~~~~~~~~ 235 (271)
T 4iin_A 172 ---GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN----LKDELKA---------DYVKNIPLN 235 (271)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------------------CGGGCTTC
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh----hcHHHHH---------HHHhcCCcC
Confidence 2233478999999999999998876 58999999999998764210 1111111 111112234
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+.+.+|+|+++++++..+. .| .+++.+|-
T Consensus 236 ~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 236 RLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 67889999999999997643 45 78887663
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=178.98 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=156.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc--------ccc---ccc--cCCCceeEEeccccccc--
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK--------ENV---MHH--FGNPNFELIRHDVVEPL-- 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~--------~~~---~~~--~~~~~v~~~~~D~~~~~-- 177 (442)
..++++|+||||+|+||++++++|+++|++|++++|+..... +.. ... ....++.++.+|+.+..
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 356779999999999999999999999999999998632211 000 000 12357888999987752
Q ss_pred ----------cCCCCEEEEecccCCCC--cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCC
Q 013467 178 ----------LLEVDQIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 178 ----------~~~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~ 242 (442)
+.++|+||||||..... ...+.++..+++|+.++.++++++... +.++|++||...+......+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~ 166 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG 166 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence 13799999999975443 122347789999999999999998764 238999999876543222222
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE---
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT--- 316 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--- 316 (442)
.|. .+......|+.+|.+.+.+++.++.+. |+++.+|+||+|.++.... . . ............
T Consensus 167 ~~~-----~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--~---~-~~~~~~~~~~~~~~~ 235 (287)
T 3pxx_A 167 AGG-----PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNS--A---P-MYRQFRPDLEAPSRA 235 (287)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSS--H---H-HHHHHCTTSSSCCHH
T ss_pred ccc-----cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc--c---c-hhhhhccccccchhH
Confidence 222 222234679999999999999988775 8999999999999875411 0 0 000000000000
Q ss_pred -----EecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 317 -----VYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 317 -----~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
..........+.+++|+|+++++++.... .| .+++.+|..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~ 285 (287)
T 3pxx_A 236 DALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAML 285 (287)
T ss_dssp HHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhh
Confidence 00001111468899999999999996542 45 7888877544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=175.58 Aligned_cols=215 Identities=12% Similarity=0.015 Sum_probs=152.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEG-IGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999985432211 11111 1245678888987651 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 169 (270)
T 3ftp_A 104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA-------------- 169 (270)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC--------------
Confidence 369999999997554322 23467789999999999998874 3344 899999977652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+.... +............ ....
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~---------p~~r 234 (270)
T 3ftp_A 170 --GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG----LPQEQQTALKTQI---------PLGR 234 (270)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH----SCHHHHHHHHTTC---------TTCS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh----cCHHHHHHHHhcC---------CCCC
Confidence 2223468999999999999998876 48999999999998753210 0011222222221 2235
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
+.+++|+|+++++++..+. .| .+++.+|..+
T Consensus 235 ~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 235 LGSPEDIAHAVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred CCCHHHHHHHHHHHhCCCcCCccCcEEEECCCccc
Confidence 7789999999999986442 45 8888877544
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=178.84 Aligned_cols=219 Identities=15% Similarity=0.103 Sum_probs=154.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC-cccccccc--CCCceeEEeccccccc-----------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR-KENVMHHF--GNPNFELIRHDVVEPL----------- 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~D~~~~~----------- 177 (442)
...++++|+||||+|+||++++++|+++|++|++.+|..... .+...... ...++.++.+|+.+..
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999998853211 11111111 2356788889987752
Q ss_pred -cCCCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|+||||||...... ..+++...+++|+.++.++++++...- .+||++||...+.
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~------------- 191 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ------------- 191 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS-------------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc-------------
Confidence 236999999999754211 123467789999999999999987642 3899999988763
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+|+++....... ....... +.......
T Consensus 192 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~--~~~~~~~---------~~~~~p~~ 257 (294)
T 3r3s_A 192 ---PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--TQDKIPQ---------FGQQTPMK 257 (294)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS--CGGGSTT---------TTTTSTTS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC--CHHHHHH---------HHhcCCCC
Confidence 22234679999999999999988765 8999999999999863100000 0000000 11122234
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+...+|+|+++++++..+. .| ++++.+|..+
T Consensus 258 r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 258 RAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 56788999999999987543 35 8888887554
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=172.87 Aligned_cols=215 Identities=11% Similarity=0.034 Sum_probs=146.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC----CCceeEEeccccccc-----cC-----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPL-----LL----- 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~-----~~----- 179 (442)
.++++|+||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.+.. +.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLE-AAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL 83 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999998542211 1111111 226788899987651 21
Q ss_pred -CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 -EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 -~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||....... .+++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 149 (260)
T 2z1n_A 84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR-------------- 149 (260)
T ss_dssp TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC--------------
Confidence 49999999996543221 2246778999999997766655 45565 999999988763
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC------chHHHH-HHHHHcCCCcEEec
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG------RVVSNF-VAQALRKEPLTVYG 319 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~ 319 (442)
+......|+.+|...+.+++.++.+. |+++.+|+||+++++....... ...... ...+ .
T Consensus 150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 218 (260)
T 2z1n_A 150 --PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSM---------A 218 (260)
T ss_dssp --CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-------------------------------
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHH---------H
Confidence 22233689999999999999887764 8999999999999875320000 000000 0000 0
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
.......+.+++|+|+++++++..+ ..| .+++.+|
T Consensus 219 ~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG 257 (260)
T 2z1n_A 219 SRIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGG 257 (260)
T ss_dssp -CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hcCCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 1111234779999999999998754 245 7777765
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=175.10 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=143.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||++++++|+++|++|+++++......+.....+ ...++.++.+|+.+.. +.+
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 104 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR 104 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999887543322222222111 2356888999987752 236
Q ss_pred CCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHHHc-------CC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAKRV-------GA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 181 ~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~~~-------g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
+|+||||||.... .. ..+++...+++|+.++.++++++... +. +||++||...+..
T Consensus 105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 173 (272)
T 4e3z_A 105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG----------- 173 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC-----------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC-----------
Confidence 8999999997543 21 12346778999999999999887543 23 8999999876521
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.......|+.+|.+.+.+++.++++. |+++.+|+||.|.++.... ............ ....
T Consensus 174 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---~~~~~~~~~~~~---------~~~~ 237 (272)
T 4e3z_A 174 ----SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHAS---GGLPDRAREMAP---------SVPM 237 (272)
T ss_dssp ----CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------------------CCTT
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccc---cCChHHHHHHhh---------cCCc
Confidence 11122569999999999999888765 8999999999999875311 011111111111 1122
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+.+++|+|+++++++..+. .| .|++.+|
T Consensus 238 ~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 238 QRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 346679999999999997542 35 7888765
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-20 Score=172.13 Aligned_cols=212 Identities=13% Similarity=0.036 Sum_probs=151.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
...+++|+||||+|+||++++++|+++|++|+++++......+.....+ ...++.++.+|+.+.. +
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH 102 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999887654322222221111 2357888999987752 1
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH-----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~-----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||....... .+++...+++|+.++.++++++. +.+. +||++||...+.
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 169 (267)
T 4iiu_A 103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM------------- 169 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH-------------
T ss_pred CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc-------------
Confidence 369999999997654322 23467789999999999998873 4444 999999977552
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+. |+++.+++||.+.++..... ...........++ .
T Consensus 170 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~~~~~~~~~~~p~---------~ 232 (267)
T 4iiu_A 170 ---GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-----ESALKEAMSMIPM---------K 232 (267)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-----HHHHHHHHHTCTT---------C
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-----HHHHHHHHhcCCC---------C
Confidence 22234789999999999988887664 89999999999998764211 3333334433222 2
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+..++|+|+++++++..+. .| .+++.+|
T Consensus 233 ~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 46789999999999997542 35 7777765
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=171.05 Aligned_cols=212 Identities=17% Similarity=0.113 Sum_probs=146.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||++++++|+++|++|++++|......+.....+ ...++.++.+|+.+.. +.+
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ 82 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999983222222111111 1346788899987652 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .++++..+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 147 (246)
T 2uvd_A 83 VDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG--------------- 147 (246)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC---------------
Confidence 9999999997543221 2246678999999977776655 44565 9999999875421
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|...+.+++.++.+ .|+++.+|+||++.++.......... .......+ ...+.
T Consensus 148 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~p---------~~~~~ 213 (246)
T 2uvd_A 148 -NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIK----AEMLKLIP---------AAQFG 213 (246)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHH----HHHHHTCT---------TCSCB
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHH----HHHHhcCC---------CCCCc
Confidence 112367999999999998887765 48999999999998874321111111 11222211 12478
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+.+|+|+++++++..+. .| .+++.+|.
T Consensus 214 ~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 214 EAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 89999999999997542 35 77777663
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=167.12 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=143.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.... ..+.++.+|+.+.. +.+
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP----------EGFLAVKCDITDTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------TTSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh----------ccceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 34567999999999999999999999999999999854321 12677888887641 235
Q ss_pred CCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||...... ..+++...+++|+.++.++++++. +.+. +||++||...+.
T Consensus 88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 151 (253)
T 2nm0_A 88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL---------------- 151 (253)
T ss_dssp CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------
Confidence 899999999754321 234578899999999999988764 3455 999999976542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.... +............ ....++
T Consensus 152 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~---------p~~~~~ 218 (253)
T 2nm0_A 152 GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV----LTDEQRANIVSQV---------PLGRYA 218 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-------------CHHHHHTTC---------TTCSCB
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh----cCHHHHHHHHhcC---------CCCCCc
Confidence 11123579999999999999887764 7999999999988764210 0011111111111 112478
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
..+|+|+++++++.++. .| .+.+.+|..
T Consensus 219 ~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 219 RPEEIAATVRFLASDDASYITGAVIPVDGGLG 250 (253)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCccccCCcCcEEEECCccc
Confidence 89999999999997642 45 677776643
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=172.45 Aligned_cols=214 Identities=11% Similarity=-0.003 Sum_probs=149.8
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++|+||||+ |+||++++++|+++|++|++++|+.. ..+...... ....+.++.+|+.+.. +
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456799999999 99999999999999999999998642 111111110 0123678888987642 2
Q ss_pred CCCCEEEEecccCCC----C----cccCChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCccccCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP----V----HYKFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~----~----~~~~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.++|+||||||.... . ...+++...+++|+.|+.++++++... +.+||++||...+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------- 166 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----------- 166 (285)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----------
Confidence 368999999997542 1 112346678999999999999998654 24899999977652
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+++++.... ......+...+....++
T Consensus 167 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~p~-------- 231 (285)
T 2p91_A 167 -----VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYS--ITGFHLLMEHTTKVNPF-------- 231 (285)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC----CTTHHHHHHHHHHHSTT--------
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhc--ccchHHHHHHHHhcCCC--------
Confidence 22234679999999999999987764 8999999999999985321 11112222222222211
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+.+++|+|+++++++..+. .| .+++.++.
T Consensus 232 -~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 -GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY 266 (285)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 236689999999999986532 35 67777663
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=168.74 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=141.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCCCcccccccc--CCCceeEEeccccccc---------
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL--------- 177 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~--------- 177 (442)
+|+|+||||+|+||++++++|+++|+ +|++++|+.... +.+...+ ...++.++.+|+.+..
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL-EKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH-HHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHH-HHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 45899999999999999999999999 999999853221 1111111 1346788999987752
Q ss_pred ---cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCC
Q 013467 178 ---LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 178 ---~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+.++|+||||||....... .+++...+++|+.++.++++++. +.+. +||++||...+.
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 150 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK---------- 150 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC----------
Confidence 2369999999997543221 23466789999999999998874 3455 999999988763
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .|+++.++|||+++++....... . .
T Consensus 151 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~-------~- 203 (244)
T 2bd0_A 151 ------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD-------------E-------M- 203 (244)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS-------------T-------T-
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc-------------c-------c-
Confidence 2223468999999999999887654 58999999999999985321000 0 0
Q ss_pred eeEeccCHHHHHHHHHHHHcCCCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
...+++++|+|++++.++..+..
T Consensus 204 -~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 204 -QALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp -GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred -cccCCCHHHHHHHHHHHHhCCcc
Confidence 12578999999999999987654
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-20 Score=174.67 Aligned_cols=218 Identities=14% Similarity=0.077 Sum_probs=151.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~ 178 (442)
...+++++||||+|+||++++++|+++|++|+++++......+..... ....++.++.+|+.+.. +
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 355679999999999999999999999999999986433222221111 12356888999987752 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .+++...+++|+.++.++++++. +.+. ++|++||...+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 167 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-------------- 167 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc--------------
Confidence 379999999997654322 22466789999999999888764 3454 999999977552
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||++..+.... ..... .... +........
T Consensus 168 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~----~~~~----~~~~~~~~~ 233 (269)
T 3gk3_A 168 --GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEA----VPQDV----LEAK----ILPQIPVGR 233 (269)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC---------------CC----SGGGCTTSS
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhh----hchhH----HHHH----hhhcCCcCC
Confidence 22234689999999999999887764 8999999999998875311 11111 1100 111112335
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
+..++|+|+++++++..+. .| .+++.+|..++
T Consensus 234 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSDDAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp CBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTSCCC
T ss_pred ccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCEeCc
Confidence 6789999999999998653 35 89988876543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=171.13 Aligned_cols=214 Identities=17% Similarity=0.102 Sum_probs=149.1
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc----------
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL---------- 177 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~---------- 177 (442)
....++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE-AAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999986432111 11111 1245778889987642
Q ss_pred --cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCc-cccCCCCCCCCCC
Q 013467 178 --LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQKET 245 (442)
Q Consensus 178 --~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~-vy~~~~~~~~~E~ 245 (442)
+.++|+||||||........ +.++..+++|+.|+.++++++. +.+. +||++||.. .+
T Consensus 95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 163 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE----------- 163 (267)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC-----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc-----------
Confidence 23699999999975433221 2356788999999999988773 3454 999999976 32
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchH--HHHHHHHHcCCCcEEecC
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 320 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||++.++... ... ...........+
T Consensus 164 -----~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p------ 228 (267)
T 1vl8_A 164 -----VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE----AVFSDPEKLDYMLKRIP------ 228 (267)
T ss_dssp -----CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH----HHHTCHHHHHHHHHTCT------
T ss_pred -----cCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccc----ccccChHHHHHHHhhCC------
Confidence 12223468999999999999998776 4899999999999886421 111 112222222211
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|+|+++++++..+. .| .+.+.+|
T Consensus 229 ---~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 263 (267)
T 1vl8_A 229 ---LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 263 (267)
T ss_dssp ---TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCC
Confidence 1246788999999999987542 45 6777665
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=170.70 Aligned_cols=214 Identities=19% Similarity=0.188 Sum_probs=145.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+.... +.....+ ..++.++.+|+.+.. +.++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG-QQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3567999999999999999999999999999999853221 1111112 246788889987752 2358
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
|+||||||....... .+++...+++|+.++.++.+++ ++.+.+||++||...+. +.
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 145 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------PI 145 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------CC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC----------------CC
Confidence 999999997543221 2246678999999887776654 33445899999988762 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.....|+.+|.+.+.+++.++.+. |+++.+||||+++++.... ..... ....+.... .......+
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~-----~~~p~~~~ 216 (253)
T 1hxh_A 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGV----SKEMVLHDP-----KLNRAGRA 216 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTC----CHHHHBCBT-----TTBTTCCE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhh----hHHHHhhhh-----ccCccCCC
Confidence 233689999999999999987663 8999999999999864210 00000 000011100 01112357
Q ss_pred cCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
.+++|+|+++++++..+ ..| .+++.+|
T Consensus 217 ~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 217 YMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp ECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 78999999999999765 235 6777665
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=167.01 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=146.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----------cCCCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----------LLEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~d~V 184 (442)
+|+++||||+|+||++++++|+++|++|++++|+... ....+ ++.++.+|+.+.. +.++|+|
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id~l 74 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE----AAQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLHVL 74 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCCEE
Confidence 4689999999999999999999999999999986432 22222 2667788876521 2369999
Q ss_pred EEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 185 ih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
|||||....... .++++..+++|+.++.++++++ ++.+. ++|++||...+... ...+
T Consensus 75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~~~~ 140 (239)
T 2ekp_A 75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG--------------GPVP 140 (239)
T ss_dssp EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------TTSC
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC--------------CCCC
Confidence 999997543221 2246778999999999988877 34565 99999998876421 0123
Q ss_pred CChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|.+.+.+++.++.+. |+++.+|+||++.++....... ...+...+....+ ...+...+|
T Consensus 141 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~p---------~~~~~~~~d 209 (239)
T 2ekp_A 141 IPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQ--NPELYEPITARIP---------MGRWARPEE 209 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--CHHHHHHHHTTCT---------TSSCBCHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcccc--CHHHHHHHHhcCC---------CCCCcCHHH
Confidence 4689999999999999987764 8999999999998874210000 0112222222211 124778999
Q ss_pred HHHHHHHHHcCC---CCc-cEEecCC
Q 013467 333 LVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 333 va~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
+|+++++++..+ ..| .+++.+|
T Consensus 210 vA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 210 IARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHcCchhcCCCCCEEEECCC
Confidence 999999998754 245 6777665
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=178.35 Aligned_cols=231 Identities=13% Similarity=0.061 Sum_probs=157.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCC---ceeEEeccccccc-----------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNP---NFELIRHDVVEPL----------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~---~v~~~~~D~~~~~----------- 177 (442)
.++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ... ++.++.+|+.+..
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEE-TKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999986432111 11111 112 6788899987652
Q ss_pred -cCCCCEEEEecccCCCCc--c----cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVH--Y----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~--~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|+||||||...... . .+.++..+++|+.++.++++++.. .+.+||++||...+...
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~--------- 173 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA--------- 173 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC---------
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC---------
Confidence 236999999999754322 1 223677899999999999888754 33589999998765321
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-Cch----HHHHHHHHHcCCCcEEe
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-GRV----VSNFVAQALRKEPLTVY 318 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-~~~----~~~~~~~~~~~~~~~~~ 318 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||++.++...... ... ...+....... .
T Consensus 174 ------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 242 (297)
T 1xhl_A 174 ------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC--I--- 242 (297)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT--C---
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhc--C---
Confidence 022367999999999999988764 5899999999999986421000 000 00111111111 1
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCCccCHHHHHHHHHHH
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPGEFTMLELAQVVQET 369 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~~~s~~dl~~~l~~~ 369 (442)
....+...+|+|+++++++..+ ..| .+++.+|....+.+.+..+.++
T Consensus 243 ----p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 243 ----PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred ----CCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhhh
Confidence 1235788999999999998754 345 7888888766666654444443
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=167.63 Aligned_cols=205 Identities=14% Similarity=0.060 Sum_probs=144.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc---ccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP---LLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~d~Vih~A~~ 190 (442)
.++++++||||+|+||++++++|+++|++|++++|... +|+.+.+..+. .+.++|+||||||.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~g~id~lv~nAg~ 69 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETIGAFDHLIVTAGS 69 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 34568999999999999999999999999999988532 11111111111 22468999999997
Q ss_pred CCCC-c----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 013467 191 ASPV-H----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 191 ~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
.... . ..+++...+++|+.++.++++++... +.++|++||...+. +......|+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~~~Y~as 133 (223)
T 3uce_A 70 YAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK----------------VVANTYVKAAI 133 (223)
T ss_dssp CCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS----------------CCTTCHHHHHH
T ss_pred CCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc----------------CCCCchHHHHH
Confidence 5221 1 12346678999999999999998764 23899999987652 23334689999
Q ss_pred HHHHHHHHHHHHhhcC-CcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHH
Q 013467 263 KRTAETLTMDYHRGAG-VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341 (442)
Q Consensus 263 K~~~E~~v~~~~~~~g-~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l 341 (442)
|.+.+.+++.++.+.+ +++.+|+||.+.++............+........+ ...+.+++|+|+++++++
T Consensus 134 K~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dvA~~~~~l~ 204 (223)
T 3uce_A 134 NAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLP---------VGKVGEASDIAMAYLFAI 204 (223)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHST---------TCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCC---------CCCccCHHHHHHHHHHHc
Confidence 9999999999988765 999999999999875321111122222333332222 235678999999999999
Q ss_pred cCCC-Cc-cEEecCCCcc
Q 013467 342 EGEH-VG-PFNLGNPGEF 357 (442)
Q Consensus 342 ~~~~-~g-~~~i~~~~~~ 357 (442)
.... .| .+++.+|..+
T Consensus 205 ~~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 205 QNSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HCTTCCSCEEEESTTGGG
T ss_pred cCCCCCCcEEEecCCeec
Confidence 8654 45 7888877543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=174.21 Aligned_cols=221 Identities=13% Similarity=0.005 Sum_probs=150.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------cCCCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--------LLEVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vi 185 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+. ...+ ..++.++.+|+.+.. +.++|+||
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv 91 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAA-ARTM-AGQVEVRELDLQDLSSVRRFADGVSGADVLI 91 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence 4567999999999999999999999999999999864322221 1111 347888999987752 23689999
Q ss_pred EecccCCCC--cccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCC-CCCCCCCCCCCCCCCCCCChhHH
Q 013467 186 HLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL-QHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 186 h~A~~~~~~--~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
||||...+. ...++++..+++|+.++.++++++..... ++|++||...+.... .....++ ..+..+...|+.
T Consensus 92 ~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~~~Y~~ 167 (291)
T 3rd5_A 92 NNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPWLAYSQ 167 (291)
T ss_dssp ECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHHHHHHH
T ss_pred ECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCcchHHH
Confidence 999976432 22345788999999999999999988765 999999988764321 1111111 134445578999
Q ss_pred HHHHHHHHHHHHHhhc---C--CcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGA---G--VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~---g--~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a 336 (442)
+|++.+.+++.++++. | +++.+|+||.|..+...... ..+.. .+...+ ..+-..+.+|+|++
T Consensus 168 sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~----~~~~~-~~~~~~--------~~~~~~~~~~~A~~ 234 (291)
T 3rd5_A 168 SKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG----RKLGD-ALMSAA--------TRVVATDADFGARQ 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc----hHHHH-HHHHHH--------HHHHhCCHHHHHHH
Confidence 9999999999987764 4 99999999999876531110 11110 010000 11123358999999
Q ss_pred HHHHHcCCC-Cc-cEEecC
Q 013467 337 LMRLMEGEH-VG-PFNLGN 353 (442)
Q Consensus 337 i~~~l~~~~-~g-~~~i~~ 353 (442)
+++++..+. .| .+++.+
T Consensus 235 ~~~l~~~~~~~G~~~~vdg 253 (291)
T 3rd5_A 235 TLYAASQDLPGDSFVGPRF 253 (291)
T ss_dssp HHHHHHSCCCTTCEEEETT
T ss_pred HHHHHcCCCCCCceeCCcc
Confidence 999988763 35 455543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=173.39 Aligned_cols=221 Identities=13% Similarity=0.005 Sum_probs=155.9
Q ss_pred CCcCCCCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc--------
Q 013467 109 PLGLKRKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL-------- 177 (442)
Q Consensus 109 ~~~~~~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~-------- 177 (442)
.+.+..++++|+||||+| +||++++++|+++|++|++++|+... .+...... ....+.++.+|+.+..
T Consensus 23 ~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 23 RTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF-KKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred cchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 334456778999999998 99999999999999999999986321 11111110 1134678899987752
Q ss_pred ----cCCCCEEEEecccCCC--------CcccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCC
Q 013467 178 ----LLEVDQIYHLACPASP--------VHYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 178 ----~~~~d~Vih~A~~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~ 242 (442)
+.++|+||||||.... ....+++...+++|+.++.++++++... +.++|++||...+.
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~------- 174 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK------- 174 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-------
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-------
Confidence 2369999999997542 1122346778999999999999998654 23899999987652
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+|.++... .......+........++
T Consensus 175 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~--~~~~~~~~~~~~~~~~p~---- 239 (296)
T 3k31_A 175 ---------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASS--GISDFHYILTWNKYNSPL---- 239 (296)
T ss_dssp ---------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCC--SCHHHHHHHHHHHHHSTT----
T ss_pred ---------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhh--cccchHHHHHHHHhcCCC----
Confidence 22334789999999999999988764 899999999999987531 111112222222222221
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCcc
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGEF 357 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~~ 357 (442)
..+...+|+|+++++++... ..| .+++.+|..+
T Consensus 240 -----~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 240 -----RRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp -----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -----CCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccc
Confidence 24567899999999999754 245 7888877544
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=172.88 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=148.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----------cCC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----------LLE 180 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~ 180 (442)
+..++++++||||+|+||++++++|+++|++|++++|... .....+ ..++.++.+|+.+.. +.+
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~g~ 79 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE----DVVADL-GDRARFAAADVTDEAAVASALDLAETMGT 79 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH----HHHHHT-CTTEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH----HHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 4456789999999999999999999999999999998322 222221 346888999987642 237
Q ss_pred CCEEEEecccCCCC--------cccCChhHHHHHhHHHHHHHHHHHHH------------cCC-eEEEeecCccccCCCC
Q 013467 181 VDQIYHLACPASPV--------HYKFNPVKTIKTNVVGTLNMLGLAKR------------VGA-RFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 181 ~d~Vih~A~~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~------------~g~-r~i~iSS~~vy~~~~~ 239 (442)
+|+||||||..... ...++++..+++|+.++.++++++.. .+. ++|++||...+.
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 155 (257)
T 3tl3_A 80 LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD---- 155 (257)
T ss_dssp EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C----
T ss_pred CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC----
Confidence 99999999964321 12234778899999999999998754 233 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|..+.... .............+.
T Consensus 156 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~- 218 (257)
T 3tl3_A 156 ------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS----LPEEARASLGKQVPH- 218 (257)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-------CHHHHHHHHHTSSS-
T ss_pred ------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhh----ccHHHHHHHHhcCCC-
Confidence 2222367999999999999988776 48999999999998875311 112222222222211
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFT 358 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s 358 (442)
...+.+.+|+|+++++++.++. .| .+++.+|..+.
T Consensus 219 -------~~r~~~p~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 -------PSRLGNPDEYGALAVHIIENPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp -------SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTC---
T ss_pred -------CCCccCHHHHHHHHHHHhcCCCCCCCEEEECCCccCC
Confidence 1357789999999999998753 35 78887775543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=164.29 Aligned_cols=208 Identities=15% Similarity=0.115 Sum_probs=146.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+++||||+|+||++++++|+++|++|++++|+.... +...... ++.++.+|+.+.. +.++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPL-REAAEAV---GAHPVVMDVADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTT---TCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHc---CCEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3567999999999999999999999999999999853211 1111111 3678888987642 1358
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||....... .++++..+++|+.++.++++++.. .+. ++|++||...++.
T Consensus 79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------------- 142 (245)
T 1uls_A 79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN---------------- 142 (245)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC----------------
Confidence 999999997543222 123667899999999999888754 354 8999999874321
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
.....|+.+|...+.+++.++.+ .|+++.+|+||++..+.... +............+. ..+.+
T Consensus 143 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~~~~~ 208 (245)
T 1uls_A 143 -LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK----VPEKVREKAIAATPL---------GRAGK 208 (245)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS----SCHHHHHHHHHTCTT---------CSCBC
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhh----cCHHHHHHHHhhCCC---------CCCcC
Confidence 12367999999999999888765 48999999999998875321 111222222222111 23778
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+|+|+++++++..+. .| .+++.+|.
T Consensus 209 ~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 238 (245)
T 1uls_A 209 PLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (245)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 9999999999997542 35 67777664
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=170.94 Aligned_cols=219 Identities=15% Similarity=0.088 Sum_probs=151.0
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
+..++++++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+..
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999986432212111111 1346788889987642
Q ss_pred cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc--C-CeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~--g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+.++|+||||||....... .++++..+++|+.++.++++++... + .++|++||...+..
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------------- 170 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK-------------- 170 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS--------------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC--------------
Confidence 2369999999997543221 2346778999999999999999875 4 49999999775421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCcc-------CCCchHHHHHHHHHc--CCCcEEe
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCI-------DDGRVVSNFVAQALR--KEPLTVY 318 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~ 318 (442)
.......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++.... .....-......+.. ..
T Consensus 171 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 244 (283)
T 1g0o_A 171 -AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS----- 244 (283)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC-----
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCC-----
Confidence 1112468999999999999988765 48999999999998863100 000000111111111 11
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
....+.+.+|+|+++++++..+ ..| .+++.+|
T Consensus 245 ----p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG 280 (283)
T 1g0o_A 245 ----PLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 280 (283)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 1224678999999999999754 245 7777766
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=173.19 Aligned_cols=215 Identities=16% Similarity=0.096 Sum_probs=149.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c-------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L------- 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+.+.. +
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 109 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADE-KAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF 109 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHH-HHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999998654322 111111 1246788899987642 1
Q ss_pred CCCCEEEEecccCCC-Ccc-----cCChhHHHHHhHHH----HHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP-VHY-----KFNPVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~-~~~-----~~~~~~~~~~nv~g----t~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|+|||+||.... ... .+++...+++|+.+ ++++++.+++.+. +||++||...+..
T Consensus 110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 178 (279)
T 3ctm_A 110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV----------- 178 (279)
T ss_dssp SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----------
T ss_pred CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC-----------
Confidence 259999999997544 211 12356788999999 5667777777775 9999999875421
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+..+...|+.+|.+.|.+++.++.+. + ++.+|+||.+.++...... ..+...+....+ .
T Consensus 179 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~p---------~ 241 (279)
T 3ctm_A 179 ---NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS----KDMKAKWWQLTP---------L 241 (279)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC----HHHHHHHHHHST---------T
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC----hHHHHHHHHhCC---------c
Confidence 012234679999999999999988764 6 9999999999887532111 122222221111 1
Q ss_pred EeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 325 RSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
..+++++|+|+++++++..+ ..| .+++.+|..
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred cCCcCHHHHHHHHHHHhCccccCccCCEEEECCCee
Confidence 24788999999999999764 245 788877643
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=169.75 Aligned_cols=206 Identities=12% Similarity=-0.001 Sum_probs=146.7
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCC---CeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc-----cC--
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARG---DSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL-----LL-- 179 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g---~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~-----~~-- 179 (442)
....++++|+||||+|+||++++++|+++| ++|++++|+..... .+.... ...++.++.+|+.+.. +.
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHHH
Confidence 344567899999999999999999999999 99999999754332 111110 1346888999987652 22
Q ss_pred -------CCCEEEEecccCC-CCc----ccCChhHHHHHhHHHHHHHHHHHHHc----------------CCeEEEeecC
Q 013467 180 -------EVDQIYHLACPAS-PVH----YKFNPVKTIKTNVVGTLNMLGLAKRV----------------GARFLLTSTS 231 (442)
Q Consensus 180 -------~~d~Vih~A~~~~-~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~----------------g~r~i~iSS~ 231 (442)
++|+||||||... ... ..+.+...+++|+.++.++++++... +.+||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 6999999999754 211 12345678899999999999887543 3489999998
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHH
Q 013467 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ 308 (442)
Q Consensus 232 ~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~ 308 (442)
..+.... +..+...|+.+|.+.+.+++.++.+ .|+++.+||||+|..+... .
T Consensus 175 ~~~~~~~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~---~--------- 229 (267)
T 1sny_A 175 LGSIQGN-------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGG---S--------- 229 (267)
T ss_dssp GGCSTTC-------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTC---T---------
T ss_pred cccccCC-------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCC---C---------
Confidence 7763211 1123467999999999999998776 5899999999999875420 0
Q ss_pred HHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---CCccEEecCCCccC
Q 013467 309 ALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVGPFNLGNPGEFT 358 (442)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g~~~i~~~~~~s 358 (442)
..++..+|+|+.++.++... ..|.|...++..+.
T Consensus 230 ----------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~ 266 (267)
T 1sny_A 230 ----------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLA 266 (267)
T ss_dssp ----------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCC
T ss_pred ----------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCcC
Confidence 02467899999999998754 24655555554443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=171.85 Aligned_cols=222 Identities=18% Similarity=0.109 Sum_probs=151.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC---------Cccccc---cc--cCCCceeEEeccccccc--
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---------RKENVM---HH--FGNPNFELIRHDVVEPL-- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~---------~~~~~~---~~--~~~~~v~~~~~D~~~~~-- 177 (442)
.++++++||||+|+||++++++|+++|++|++++|.... ..+.+. .. ....++.++.+|+.+..
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 456799999999999999999999999999999984211 111111 11 12356888899987752
Q ss_pred ----------cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcC--CeEEEeecCccccCC
Q 013467 178 ----------LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDP 237 (442)
Q Consensus 178 ----------~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g--~r~i~iSS~~vy~~~ 237 (442)
+.++|+||||||....... .++++..+++|+.++.++++++ ++.+ .+||++||...+.
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-- 166 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK-- 166 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC--
Confidence 2369999999997654332 2346778999999999998875 3333 3899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCC
Q 013467 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 314 (442)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 314 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+... ................
T Consensus 167 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~ 229 (277)
T 3tsc_A 167 --------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGS---GDMVTAVGQAMETNPQ 229 (277)
T ss_dssp --------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGS---HHHHHHHHHHHHTCGG
T ss_pred --------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCccc---chhhhhhhhcccccHH
Confidence 22234679999999999999988764 899999999999887421 1111111111111110
Q ss_pred c-EEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 315 L-TVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 315 ~-~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
. ..+..... ..+.+.+|+|+++++++..+. .| .+++.+|.
T Consensus 230 ~~~~~~~~~p-~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 230 LSHVLTPFLP-DWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp GTTTTCCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHhhhccC-CCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 0 00111111 247899999999999997653 35 78877663
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=171.73 Aligned_cols=214 Identities=14% Similarity=-0.009 Sum_probs=150.3
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++|+||||+ |+||++++++|+++|++|++++|+.. ..+...... ....+.++.+|+.+.. +
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 346799999999 99999999999999999999999753 211111110 0123678889987641 2
Q ss_pred CCCCEEEEecccCCC----C----cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP----V----HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~----~----~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|+||||||.... . ...++++..+++|+.++.++++++... +.+||++||...+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------------ 150 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC------------
Confidence 368999999997542 1 112346778999999999999999765 34899999976542
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||++.++.... ......+...+....++
T Consensus 151 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p~--------- 215 (275)
T 2pd4_A 151 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSG--IADFRMILKWNEINAPL--------- 215 (275)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGG--STTHHHHHHHHHHHSTT---------
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhh--ccccHHHHHHHHhcCCc---------
Confidence 22233679999999999999987765 8999999999999875321 11112222222222111
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+.+.+|+|+++++++..+. .| .+++.++.
T Consensus 216 ~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 216 RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250 (275)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 135678999999999996532 45 67777663
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=166.99 Aligned_cols=204 Identities=17% Similarity=0.104 Sum_probs=141.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ +..+.+|+.+.. +.++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----------~~~~~~D~~~~~~~~~~~~~~~~~~g~i 82 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG----------LFGVEVDVTDSDAVDRAFTAVEEHQGPV 82 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT----------SEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH----------hcCeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999999999986432211 112667776541 2368
Q ss_pred CEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||...... ..++++..+++|+.++.++++++. +.+. +||++||...+. +
T Consensus 83 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 146 (247)
T 1uzm_A 83 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW----------------G 146 (247)
T ss_dssp SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc----------------C
Confidence 99999999754321 123467789999999999988774 3555 999999986542 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||++.++.... +............ ....+.+
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~---------p~~~~~~ 213 (247)
T 1uzm_A 147 IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFI---------PAKRVGT 213 (247)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGC---------TTCSCBC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh----cCHHHHHHHHhcC---------CCCCCcC
Confidence 122367999999999999988775 48999999999997753100 0011111111111 1124789
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
++|+|+++++++..+. .| .+++.+|..
T Consensus 214 ~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 214 PAEVAGVVSFLASEDASYISGAVIPVDGGMG 244 (247)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHcCccccCCcCCEEEECCCcc
Confidence 9999999999997542 45 788877643
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=170.36 Aligned_cols=221 Identities=16% Similarity=0.074 Sum_probs=150.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEE-VADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF 103 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999999999986432221 11111 2346788999997752 2
Q ss_pred CCCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||.... .. ..++++..+++|+.|+.++++++ ++.+. ++|++||...+..
T Consensus 104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------ 171 (283)
T 3v8b_A 104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT------------ 171 (283)
T ss_dssp SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB------------
T ss_pred CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC------------
Confidence 369999999997532 11 12246778999999999999987 55565 9999999875421
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee-
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT- 324 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+......... .. ....+..........
T Consensus 172 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-~~-----~~~~~~~~~~~~~p~~ 243 (283)
T 3v8b_A 172 --FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRH-EE-----ETAIPVEWPKGQVPIT 243 (283)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCC-HH-----HHSCCCBCTTCSCGGG
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCccccccccc-ch-----hhhhhhhhhhhcCccc
Confidence 12223468999999999999999876 4899999999999887532111000 00 000011111111111
Q ss_pred -EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 325 -RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 325 -~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+|+++++++.... .| .+++.+|
T Consensus 244 ~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 244 DGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278 (283)
T ss_dssp TTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence 356789999999999987543 46 7777765
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=175.74 Aligned_cols=225 Identities=13% Similarity=0.119 Sum_probs=152.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---cccCCCceeEEecccccc--------ccCCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHFGNPNFELIRHDVVEP--------LLLEV 181 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~~~~~v~~~~~D~~~~--------~~~~~ 181 (442)
..++|+++||||+|+||++++++|+++|++|++++|+.....+... .......+.++.+|+.+. .+.++
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 3456799999999999999999999999999999986432221111 111134567788888764 23479
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|++|||||........ ++++..+++|+.++.++++++ ++.+. ++|++||...+. +
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 150 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM----------------P 150 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc----------------C
Confidence 9999999976543322 235667999999987776655 44554 999999987662 3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-------CCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-------DDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.... .............+... ....
T Consensus 151 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 225 (267)
T 3t4x_A 151 SQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN-----RPTS 225 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH-----CTTC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc-----CCcc
Confidence 3334789999999999999998765 7999999999988752100 00000011111111110 0011
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
....+.+++|+|+++++++.... .| .+++.+|...+
T Consensus 226 ~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 226 IIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp SSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred cccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 23467889999999999987542 45 88888776544
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=168.42 Aligned_cols=204 Identities=8% Similarity=-0.013 Sum_probs=135.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc-----c------CCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL-----L------LEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~-----~------~~~ 181 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. + .++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i 84 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL 84 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence 45679999999999999999999999999999999644322211111 02347888999987752 1 368
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||....... .+++...+++|+.|+.++++++ ++.+. ++|++||...+. +
T Consensus 85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 148 (252)
T 3h7a_A 85 EVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR----------------G 148 (252)
T ss_dssp EEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC----------------C
T ss_pred eEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC----------------C
Confidence 999999997654322 2236778999999998888876 44554 999999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcE-EEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEV-RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~-~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++.+. |+++ .++.||.+..+.... ....... .+....... +.
T Consensus 149 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~----~~~~~~~---------~~~~~~~~~-~~ 214 (252)
T 3h7a_A 149 GSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE----RREQMFG---------KDALANPDL-LM 214 (252)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------C
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhc----cchhhhh---------hhhhcCCcc-CC
Confidence 2234789999999999999987764 8999 899999987764211 0011100 011111223 88
Q ss_pred CHHHHHHHHHHHHcCCCCc
Q 013467 329 FVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~~g 347 (442)
..+|+|+++++++..+...
T Consensus 215 ~pedvA~~~~~l~s~~~~~ 233 (252)
T 3h7a_A 215 PPAAVAGAYWQLYQQPKSA 233 (252)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHhCchhc
Confidence 9999999999999877543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-20 Score=173.69 Aligned_cols=219 Identities=10% Similarity=0.047 Sum_probs=153.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 456789999999999999999999999999999998643222111111 01346888999987752 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .+++...+++|+.++.++++++. +.+. +||++||...+.
T Consensus 104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 169 (277)
T 4fc7_A 104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR-------------- 169 (277)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH--------------
T ss_pred CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC--------------
Confidence 369999999996543222 23467789999999999999873 3334 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+|.++........ ............+ ...
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~p---------~~r 237 (277)
T 4fc7_A 170 --GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGG-PQASLSTKVTASP---------LQR 237 (277)
T ss_dssp --TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSC-CHHHHHHHHHTST---------TSS
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccC-CHHHHHHHhccCC---------CCC
Confidence 22233689999999999999988764 89999999999998631000000 0122222222222 224
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
+...+|+|+++++++.... .| .+++.+|..+
T Consensus 238 ~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~~~ 272 (277)
T 4fc7_A 238 LGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWL 272 (277)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHH
T ss_pred CcCHHHHHHHHHHHcCCccCCcCCCEEEECCCccc
Confidence 6789999999999997542 45 7888777543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=166.30 Aligned_cols=219 Identities=17% Similarity=0.105 Sum_probs=152.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC------------ccccc---ccc--CCCceeEEeccccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR------------KENVM---HHF--GNPNFELIRHDVVE 175 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~------------~~~~~---~~~--~~~~v~~~~~D~~~ 175 (442)
..++++++||||+|+||++++++|+++|++|++++|+.... .+.+. ..+ ...++.++.+|+.+
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 34678999999999999999999999999999999863211 11111 111 23468889999977
Q ss_pred cc------------cCCCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCc
Q 013467 176 PL------------LLEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSE 232 (442)
Q Consensus 176 ~~------------~~~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~ 232 (442)
.. +.++|+||||||...... ..+++...+++|+.++.++++++.. .+ .++|++||..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG 167 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 52 236999999999754432 1234677899999999999887643 33 3899999987
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHH----
Q 013467 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNF---- 305 (442)
Q Consensus 233 vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~---- 305 (442)
.+. +......|+.+|.+.+.+++.++.+ .|+++.+|+||+|..+.... ......+
T Consensus 168 ~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~ 229 (286)
T 3uve_A 168 GLK----------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHN--EGTFKMFRPDL 229 (286)
T ss_dssp GTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSS--HHHHHHHCTTS
T ss_pred hcc----------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccc--cchhhhccccc
Confidence 652 2233468999999999999998876 48999999999999875311 0000000
Q ss_pred -------HHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 306 -------VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 306 -------~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
....... ..... ..+.+.+|+|+++++++.... .| .+++.+|..
T Consensus 230 ~~~~~~~~~~~~~~------~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 230 ENPGPDDMAPICQM------FHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSC 284 (286)
T ss_dssp SSCCHHHHHHHHHT------TCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cccchhhHHHHHHh------hhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCccc
Confidence 0000000 01111 467899999999999997542 45 788887754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=177.98 Aligned_cols=208 Identities=16% Similarity=0.082 Sum_probs=142.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +.+
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 45679999999999999999999999999999998643222111111 02347888999987752 136
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC-C-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+||||||....... .+++...+++|+.|+.++++++. +.+ . +||++||...+.
T Consensus 109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 173 (301)
T 3tjr_A 109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV--------------- 173 (301)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS---------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------------
Confidence 9999999997644322 22466789999999999998863 344 3 899999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHH-----HHcCCCcEEecCCc
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQ-----ALRKEPLTVYGDGK 322 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.. ...... .....+...++...
T Consensus 174 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
T 3tjr_A 174 -PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV--------SNSERIRGADYGMSATPEGAFGPLP 244 (301)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH--------HHHHHHC------------------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc--------cccccccchhhccccChhhhccccc
Confidence 22334689999999999999887664 89999999999887531 111100 00111112222233
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
....+++++|+|++++.+++++.
T Consensus 245 ~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 245 TQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ----CCCHHHHHHHHHHHHHHTC
T ss_pred cccCCCCHHHHHHHHHHHHhcCC
Confidence 44578999999999999998764
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=176.25 Aligned_cols=216 Identities=14% Similarity=0.075 Sum_probs=152.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------cC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~ 179 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +.
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI 102 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999999999999988543222111111 02346788889987752 23
Q ss_pred CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|+||||||....... .++++..+++|+.++.++++++. +.+. +||++||...+
T Consensus 103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~---------------- 166 (271)
T 4ibo_A 103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSE---------------- 166 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------
T ss_pred CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhC----------------
Confidence 69999999997544322 23467789999999999977664 3454 99999997754
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchH--HHHHHHHHcCCCcEEecCCceeE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++... ... ..+........++ .
T Consensus 167 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p~---------~ 233 (271)
T 4ibo_A 167 LARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQ----ALIDNPEFDAWVKARTPA---------K 233 (271)
T ss_dssp SBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHHCHHHHHHHHHHSTT---------C
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchh----hcccCHHHHHHHHhcCCC---------C
Confidence 22333478999999999999998876 4899999999999987421 010 1122222222222 2
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.+..++|+|+++++++.... .| .+++.+|...
T Consensus 234 r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 234 RWGKPQELVGTAVFLSASASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCcEEEECCCeec
Confidence 46678999999999987543 45 8888877543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=168.52 Aligned_cols=211 Identities=18% Similarity=0.163 Sum_probs=149.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ..++.++.+|+.+.. +.++
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKA-AAASI-GKKARAIAADISDPGSVKALFAEIQALTGGI 81 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHHH-CTTEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 456799999999999999999999999999999886432222 11111 346788889987652 2369
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHH----HHHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~----a~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||........ ++++..+++|+.++.+++++ +++.+ . ++|++||...+.
T Consensus 82 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 145 (247)
T 3rwb_A 82 DILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA---------------- 145 (247)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH----------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc----------------
Confidence 9999999976443322 24677899999999999887 45555 4 999999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+............+.... . ....+.
T Consensus 146 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~---------~~~r~~ 213 (247)
T 3rwb_A 146 GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---Q---------AMKGKG 213 (247)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---S---------SSCSCB
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---c---------ccCCCc
Confidence 2223468999999999999998876 589999999999987632111111111111110 1 122456
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|+|+++.+++..+. .| .+++.+|
T Consensus 214 ~pedva~~v~~L~s~~~~~itG~~i~vdGG 243 (247)
T 3rwb_A 214 QPEHIADVVSFLASDDARWITGQTLNVDAG 243 (247)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 78999999999997653 45 7777765
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=168.35 Aligned_cols=216 Identities=11% Similarity=-0.005 Sum_probs=152.8
Q ss_pred CCCCEEEEEcCCch--hHHHHHHHHHhCCCeEEEEeCCCCCCc--cccccccCCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGF--VGSHLVDRLIARGDSVIVVDNFFTGRK--ENVMHHFGNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~--lG~~lv~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~------------ 177 (442)
.++++|+||||+|+ ||++++++|+++|++|++++|...... ..........++.++.+|+.+..
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 45679999999988 999999999999999999998632111 11111222336889999997752
Q ss_pred cCCCCEEEEecccCCC----Cc----ccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASP----VH----YKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~----~~----~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|+||||||.... .. ..+.+...+++|+.++.++++++...- .++|++||...+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 153 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL----------- 153 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc-----------
Confidence 2368999999997541 11 112356788999999999999987642 3899999987652
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.... ......+...+....++
T Consensus 154 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~-------- 218 (266)
T 3oig_A 154 -----VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKG--ISDFNSILKDIEERAPL-------- 218 (266)
T ss_dssp -----CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTT--CTTHHHHHHHHHHHSTT--------
T ss_pred -----cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc--ccchHHHHHHHHhcCCC--------
Confidence 22234689999999999999987764 8999999999998864321 11122333333322211
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
..+...+|+|+++++++..+. .| .+++.+|-.
T Consensus 219 -~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (266)
T 3oig_A 219 -RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFH 254 (266)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeE
Confidence 246788999999999997542 35 788877643
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=169.11 Aligned_cols=214 Identities=18% Similarity=0.060 Sum_probs=152.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV-VADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH-HHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999996433222 11111 2346788899987752 2
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|+||||||........ +.++..+++|+.++.++++++.. .+ .++|++||...+..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~------------ 175 (276)
T 3r1i_A 108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHII------------ 175 (276)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhccc------------
Confidence 2799999999976543322 23566789999999999887643 33 48999999775421
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
........|+.+|.+.+.+++.++.+ .|+++.+|+||+|..+..... ..+........+ ..
T Consensus 176 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-----~~~~~~~~~~~p---------~~ 239 (276)
T 3r1i_A 176 --NIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-----ADYHALWEPKIP---------LG 239 (276)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-----GGGHHHHGGGST---------TS
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-----hHHHHHHHhcCC---------CC
Confidence 11112367999999999999998876 589999999999998753211 112222222221 12
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+...+|+|+++++++.... .| .+++.+|.
T Consensus 240 r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 240 RMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp SCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 46778999999999997543 45 77777663
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=172.19 Aligned_cols=218 Identities=13% Similarity=0.020 Sum_probs=150.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-C-CC---ceeEEeccccccc-----------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-G-NP---NFELIRHDVVEPL----------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~-~~---~v~~~~~D~~~~~----------- 177 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+ ....+ . .. ++.++.+|+.+..
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEE-TRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999986432211 11111 1 12 6788999987752
Q ss_pred -cCCCCEEEEecccCCCCc----c----cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVH----Y----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKE 244 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~----~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E 244 (442)
+.++|+||||||...... . .+.+...+++|+.++.++++++.. .+.++|++||...+...
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 155 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA------- 155 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC-------
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC-------
Confidence 236999999999754322 1 123677899999999999988754 33599999998765321
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCC-Cch----HHHHHHHHHcCCCcE
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDD-GRV----VSNFVAQALRKEPLT 316 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~-~~~----~~~~~~~~~~~~~~~ 316 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||+++++...... ... ...+.......
T Consensus 156 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 223 (280)
T 1xkq_A 156 --------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC---- 223 (280)
T ss_dssp --------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT----
T ss_pred --------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC----
Confidence 022367999999999999998765 4899999999999987421100 000 01111111111
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCCc
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPGE 356 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~~ 356 (442)
.....+.+++|+|+++++++..+ ..| .+++.+|..
T Consensus 224 -----~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 224 -----IPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 263 (280)
T ss_dssp -----CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred -----CCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcc
Confidence 11235789999999999998654 345 788877644
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=165.56 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=142.2
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~ 179 (442)
....+|+|+||||+|+||++++++|+++|++|++++|+...... ..+..|+.+. .+.
T Consensus 18 ~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-----------HSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-----------EEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----------cceEEEeCCHHHHHHHHHHHHHHcC
Confidence 33446799999999999999999999999999999996543221 1233444332 223
Q ss_pred CCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|+||||||...... ..+++...+++|+.++.++++++...- .+||++||...+.
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------- 150 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN---------------- 150 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc----------------
Confidence 5899999999654322 123467789999999999999987642 3899999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++. ....... .....
T Consensus 151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~------------~~~~~~~---------~~~~~ 209 (251)
T 3orf_A 151 RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT------------NRKYMSD---------ANFDD 209 (251)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH------------HHHHCTT---------SCGGG
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc------------hhhhccc---------ccccc
Confidence 2333478999999999999999877 48999999999987642 1111111 12346
Q ss_pred ccCHHHHHHHHHHHHcC-C---CCc-cEEecCCCc
Q 013467 327 FQFVSDLVEGLMRLMEG-E---HVG-PFNLGNPGE 356 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~-~---~~g-~~~i~~~~~ 356 (442)
+++++|+|++++.++.. . ..| .+++.+++.
T Consensus 210 ~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~ 244 (251)
T 3orf_A 210 WTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSK 244 (251)
T ss_dssp SBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHhcCccccCCcceEEEEecCCc
Confidence 78899999999999987 2 235 777766544
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=166.81 Aligned_cols=214 Identities=19% Similarity=0.150 Sum_probs=152.9
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
...++|+++||||+|+||++++++|+++|++|++++++...+.+.....+ ...++.++.+|+.+..
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999775433322222221 2346788999987752
Q ss_pred cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+.++|+||||||....... .++++..+++|+.++.++++++... +.++|++||.....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~--------------- 171 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL--------------- 171 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC---------------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc---------------
Confidence 2269999999997544322 2346778999999999999998764 34899999865321
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|+||.|.++..... ...... .....++ ..+
T Consensus 172 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~----~~~~~~~---------~r~ 237 (271)
T 3v2g_A 172 VPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD-GDHAEA----QRERIAT---------GSY 237 (271)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS-CSSHHH----HHHTCTT---------SSC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc-chhHHH----HHhcCCC---------CCC
Confidence 122334789999999999999988764 89999999999998764321 112222 2222111 246
Q ss_pred cCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
...+|+|+++++++... -.| .+++.+|
T Consensus 238 ~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 268 (271)
T 3v2g_A 238 GEPQDIAGLVAWLAGPQGKFVTGASLTIDGG 268 (271)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCcccCCccCCEEEeCcC
Confidence 67899999999998654 245 7777765
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=178.03 Aligned_cols=214 Identities=15% Similarity=0.062 Sum_probs=136.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---ccCCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HFGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~------------~ 178 (442)
..+++||||||+|+||++++++|+++|++|++++|+.....+.... ......+.++.+|+.+.. +
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3466999999999999999999999999999999964322211111 111226888999987752 2
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc-----------CCeEEEeecCccccCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV-----------GARFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~-----------g~r~i~iSS~~vy~~~~~~~~~ 243 (442)
.++|+||||||........ +++...+++|+.|+.++++++... +.+||++||...+.
T Consensus 86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~-------- 157 (319)
T 3ioy_A 86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL-------- 157 (319)
T ss_dssp CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC--------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc--------
Confidence 3689999999975433222 336678999999999998877432 23799999988663
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.||.+.+.+++.++.+ .|+++++|+||.|.++..... ......+..............
T Consensus 158 --------~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (319)
T 3ioy_A 158 --------AAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASD--DIRPDALKGEVKPVDKTAVER 227 (319)
T ss_dssp --------CCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC------------------------------
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCccccc--ccCchhhcccccchhHHHHHH
Confidence 2222367999999777777666543 489999999999988753211 001111110000000000001
Q ss_pred C-ceeEeccCHHHHHHHHHHHHcCCC
Q 013467 321 G-KQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 321 ~-~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
. ......++++|+|++++.+++++.
T Consensus 228 ~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 228 LAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp -CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 0 011123799999999999999865
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-19 Score=165.93 Aligned_cols=212 Identities=15% Similarity=0.067 Sum_probs=147.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC-cccccccc--CCCceeEEeccccccc------------cCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR-KENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
+|+++||||+|+||++++++|+++|++|++++|+.... .+.....+ ...++.++.+|+.+.. +.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999999864320 11111111 1346788899987752 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cC--CeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+||||||....... .+++...+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ--------------- 146 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc---------------
Confidence 9999999997543222 224667899999999999888754 23 5999999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchH-----------HHHHHHHHcCCCcE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVV-----------SNFVAQALRKEPLT 316 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 316 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+... ... ..+...+....
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (258)
T 3a28_C 147 -GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWE----QIDAELSKINGKPIGENFKEYSSSI--- 218 (258)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHH----HHHHHHHHHHCCCTTHHHHHHHTTC---
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhh----hhhhhhccccCCchHHHHHHHHhcC---
Confidence 22234689999999999999887653 899999999998775310 000 00111111111
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
....+.+.+|+|+++++++..+ ..| .+++.+|..
T Consensus 219 ------p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 219 ------ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGML 256 (258)
T ss_dssp ------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSC
T ss_pred ------CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEe
Confidence 1224788999999999999764 245 777776643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=167.63 Aligned_cols=219 Identities=13% Similarity=0.035 Sum_probs=147.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|+++++......+.....+ ...++.++.+|+.+.. +.
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG 85 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 456799999999999999999999999999999664333222222111 2346788999987752 23
Q ss_pred CCCEEEEecccCCC-Ccc----cCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~~~----~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|+||||||.... ... .+.++..+++|+.|+.++++++...- .++|++||...+..
T Consensus 86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 150 (259)
T 3edm_A 86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG--------------- 150 (259)
T ss_dssp SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC---------------
T ss_pred CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC---------------
Confidence 69999999986522 111 12357789999999999999987652 38999999876511
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
+......|+.+|.+.+.+++.++.+. ++++.+|+||.+..+... .+.. ......+........+.+
T Consensus 151 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~--------~~~~----~~~~~~~~~~~p~~r~~~ 218 (259)
T 3edm_A 151 GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHD--------TFTK----PEVRERVAGATSLKREGS 218 (259)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------------CCBC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccc--------cccC----hHHHHHHHhcCCCCCCcC
Confidence 12223679999999999999988775 389999999999876421 1100 000011112223346778
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCCCccCH
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTM 359 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~ 359 (442)
++|+|+++++++.... .| .+++.+|...+.
T Consensus 219 pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 219 SEDVAGLVAFLASDDAAYVTGACYDINGGVLFSE 252 (259)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC-
T ss_pred HHHHHHHHHHHcCccccCccCCEEEECCCcCCCC
Confidence 9999999999997653 45 788877755443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=168.25 Aligned_cols=218 Identities=17% Similarity=0.110 Sum_probs=152.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 178 (442)
..++++++||||+|+||++++++|+++|++|++++++.....+.....+ ...++.++.+|+.+.. +
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999998875433222222221 2356888999987752 2
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
.++|+||||||....... .++++..+++|+.++.++++++... +.++|++||..... .
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------~ 159 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD---------------F 159 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT---------------C
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc---------------C
Confidence 369999999997644332 2346778999999999999988764 23899999976211 1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC------C--CchHHHHHHHHHcCCCcEEecC
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID------D--GRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++..... . ...............
T Consensus 160 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 232 (270)
T 3is3_A 160 SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHAS------- 232 (270)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHS-------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcC-------
Confidence 2233478999999999999998876 489999999999998752100 0 000111211222111
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
....+.+.+|+|+++++++.... .| .+++.+|
T Consensus 233 --p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 268 (270)
T 3is3_A 233 --PLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGG 268 (270)
T ss_dssp --TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred --CCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCC
Confidence 12346779999999999997542 45 7777765
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-20 Score=171.92 Aligned_cols=218 Identities=16% Similarity=0.156 Sum_probs=146.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc---cccccCCCceeEEeccccccc------------cC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN---VMHHFGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~------------~~ 179 (442)
++++|+||||+|+||++++++|+++|++|++++|+.....+. +.......++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999999999864321111 111111235788899987752 23
Q ss_pred CCCEEEEecccCCCCcccCChhHHHHHhHHHHHHH----HHHHHHcC---C-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNM----LGLAKRVG---A-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~l----l~~a~~~g---~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|+||||||... .+++...+++|+.++..+ ++.+++.+ . +||++||...+..
T Consensus 86 ~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 146 (267)
T 2gdz_A 86 RLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP--------------- 146 (267)
T ss_dssp CCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC---------------
T ss_pred CCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC---------------
Confidence 5899999999643 346788899999876555 44454442 4 8999999887632
Q ss_pred CCCCCChhHHHHHHHHHHHHHHH-----hhcCCcEEEEeeCceeCCCCccCCCc-hHHH---HHHHHHcCCCcEEecCCc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYH-----RGAGVEVRIARIFNTYGPRMCIDDGR-VVSN---FVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~-----~~~g~~~~iiRp~~v~G~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ 322 (442)
......|+.+|.+.+.+++.++ ...|+++.+|+||.+.++........ .... +..... ...
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 216 (267)
T 2gdz_A 147 -VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIK---------DMI 216 (267)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHH---------HHH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHH---------HHh
Confidence 1223679999999999988742 23589999999999987531100000 0000 000000 000
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccCHHH
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFTMLE 361 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s~~d 361 (442)
....+++++|+|+++++++.++. .| ++++.+++.+++.|
T Consensus 217 ~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 217 KYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred ccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence 11347899999999999998753 45 89998887766554
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=172.10 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=152.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC--------ccccc---cc--cCCCceeEEeccccccc--
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR--------KENVM---HH--FGNPNFELIRHDVVEPL-- 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~--------~~~~~---~~--~~~~~v~~~~~D~~~~~-- 177 (442)
..++++++||||+|+||++++++|+++|++|++++|+.... .+.+. .. ....++.++.+|+.+..
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 35678999999999999999999999999999999863211 11111 11 12357888999997752
Q ss_pred ----------cCCCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHHHH----cC-C-eEEEeecCccccC
Q 013467 178 ----------LLEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKR----VG-A-RFLLTSTSEVYGD 236 (442)
Q Consensus 178 ----------~~~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~----~g-~-r~i~iSS~~vy~~ 236 (442)
+.++|+||||||...... ..++++..+++|+.++.++++++.. .+ . +||++||...+.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~- 183 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR- 183 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-
Confidence 236999999999754432 1234677899999999999988643 23 3 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC----------CCchHH
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID----------DGRVVS 303 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~----------~~~~~~ 303 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+|.++..... ......
T Consensus 184 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 248 (299)
T 3t7c_A 184 ---------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVE 248 (299)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHH
T ss_pred ---------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhh
Confidence 22334689999999999999988765 89999999999998753110 000001
Q ss_pred HHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 304 NFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
.+....... .... ..+...+|+|+++++++..+. .| .+++.+|..
T Consensus 249 ~~~~~~~~~-------~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 249 DFQVASRQM-------HVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHHHHH-------SSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHhhhh-------cccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCcc
Confidence 110000000 0001 357789999999999997653 35 788877754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=171.29 Aligned_cols=214 Identities=10% Similarity=0.057 Sum_probs=149.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCcccccc---ccCCCceeEEeccccccc----------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMH---HFGNPNFELIRHDVVEPL---------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~---------- 177 (442)
.++++|+||||+|+||++++++|+++|+ +|++.+|+.....+.... .....++.++.+|+.+..
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999999987 999999864322111111 112356888999987752
Q ss_pred --cCCCCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCC
Q 013467 178 --LLEVDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 178 --~~~~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+.++|+||||||.... .. ..++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 111 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------- 180 (287)
T 3rku_A 111 QEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD---------- 180 (287)
T ss_dssp GGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC----------
Confidence 2369999999997542 11 12346788999999999999887 44554 999999987652
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|..+............. .......
T Consensus 181 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~--------- 244 (287)
T 3rku_A 181 ------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQA-KNVYKDT--------- 244 (287)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHH-HHHHTTS---------
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHH-HHhhccc---------
Confidence 2233478999999999999999887 48999999999998763100000000111 1111111
Q ss_pred eeEeccCHHHHHHHHHHHHcCCCC---c-cEEecCCCc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEHV---G-PFNLGNPGE 356 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~~---g-~~~i~~~~~ 356 (442)
.++..+|+|+++++++..+.. | ++.+.+++.
T Consensus 245 ---~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 ---TPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp ---CCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred ---CCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 123689999999999987764 4 677766543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=168.49 Aligned_cols=212 Identities=19% Similarity=0.170 Sum_probs=150.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+++||||+|+||++++++|+++|++|++++|+..... .....+. .++.++.+|+.+.. +.++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA-EAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 34679999999999999999999999999999998642211 1111112 46788889987652 2358
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|+||||||........ ++++..+++|+.++.++++++... +.+||++||...++. +
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------------~-- 144 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA---------------F-- 144 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH---------------H--
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC---------------C--
Confidence 9999999975432221 235678899999999999998764 349999999876521 0
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|...+.+++.++.+ .|+++.+|+||.+.++.... +...+........++ ..+.+.+
T Consensus 145 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~~~~~p~ 211 (263)
T 2a4k_A 145 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG----LPPWAWEQEVGASPL---------GRAGRPE 211 (263)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT----SCHHHHHHHHHTSTT---------CSCBCHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhh----cCHHHHHHHHhcCCC---------CCCcCHH
Confidence 1257999999999999888765 38999999999999875311 112222222222211 2467899
Q ss_pred HHHHHHHHHHcCC---CCc-cEEecCCCcc
Q 013467 332 DLVEGLMRLMEGE---HVG-PFNLGNPGEF 357 (442)
Q Consensus 332 Dva~ai~~~l~~~---~~g-~~~i~~~~~~ 357 (442)
|+|+++++++..+ ..| .+++.+|..+
T Consensus 212 dvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 212 EVAQAALFLLSEESAYITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHhCccccCCcCCEEEECCCccc
Confidence 9999999999754 245 7777776443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=165.39 Aligned_cols=187 Identities=14% Similarity=-0.001 Sum_probs=130.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
+++|+||||+|+||++++++|+++|++|++++|+.... +.....+ .++.++.+|+.+.. +.++|+
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRL-QALAAEL--EGALPLPGDVREEGDWARAVAAMEEAFGELSA 81 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHS--TTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHh--hhceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46899999999999999999999999999999853221 1111111 26778888987641 236899
Q ss_pred EEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHH----HHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~----a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||+||....... .+++...+++|+.++.++++. +++.+. +||++||...+. +..
T Consensus 82 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 145 (234)
T 2ehd_A 82 LVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN----------------PFK 145 (234)
T ss_dssp EEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------------CCT
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------------CCC
Confidence 9999997543221 123567899999998766554 455565 999999987652 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+ .|++++++|||++..+.. ... .. . ..+++.+
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~~-----~~-~----------~~~~~~~ 201 (234)
T 2ehd_A 146 GGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFA--------GNT-----PG-Q----------AWKLKPE 201 (234)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------------CCHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcc--------ccc-----cc-c----------cCCCCHH
Confidence 3468999999999998887665 489999999999876531 000 00 0 0157899
Q ss_pred HHHHHHHHHHcCCC
Q 013467 332 DLVEGLMRLMEGEH 345 (442)
Q Consensus 332 Dva~ai~~~l~~~~ 345 (442)
|+|++++.++.++.
T Consensus 202 dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 202 DVAQAVLFALEMPG 215 (234)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999998764
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=167.40 Aligned_cols=210 Identities=17% Similarity=0.080 Sum_probs=145.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK-AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999998643211 111111 1246788899987752 2379
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC-C-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
|+||||||....... .+.++..+++|+.++.++++++. +.+ . ++|++||...+.
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 144 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV---------------- 144 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----------------
Confidence 999999997543222 12356789999999988877664 344 4 999999977542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHH-----------HHHHHHHcCCCcEE
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVS-----------NFVAQALRKEPLTV 317 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 317 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||++.++... .... .....+...
T Consensus 145 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----- 215 (256)
T 1geg_A 145 GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA----EIDRQVSEAAGKPLGYGTAEFAKR----- 215 (256)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH----HHHHHHHHHHTCCTTHHHHHHHTT-----
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh----hhhhhccccccCChHHHHHHHHhc-----
Confidence 1122367999999999999998765 4899999999999876310 0000 001111111
Q ss_pred ecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 318 YGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 318 ~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
.....+.+.+|+|+++++++..+ ..| .+++.+|.
T Consensus 216 ----~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (256)
T 1geg_A 216 ----ITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 253 (256)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred ----CCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 11235789999999999999754 245 77777664
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=177.45 Aligned_cols=227 Identities=17% Similarity=0.089 Sum_probs=159.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC---------CCCcccccccc--CCCceeEEeccccccc-----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF---------TGRKENVMHHF--GNPNFELIRHDVVEPL----- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~---------~~~~~~~~~~~--~~~~v~~~~~D~~~~~----- 177 (442)
.++++|+||||+|+||++++++|+++|++|++++|+. ....+.....+ ...++.++.+|+.+..
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 4678999999999999999999999999999999862 11111111111 2346788889987752
Q ss_pred -------cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHc-------C----CeEEEeecCcccc
Q 013467 178 -------LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRV-------G----ARFLLTSTSEVYG 235 (442)
Q Consensus 178 -------~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~-------g----~r~i~iSS~~vy~ 235 (442)
+.++|+||||||....... .+++...+++|+.++.++++++... + .+||++||...+.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 184 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence 2379999999997654322 2246778999999999999877432 1 3899999977652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC
Q 013467 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK 312 (442)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 312 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+|| +..+..........
T Consensus 185 ----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~---------- 237 (322)
T 3qlj_A 185 ----------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM---------- 237 (322)
T ss_dssp ----------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC------------
T ss_pred ----------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh----------
Confidence 2223368999999999999998876 58999999999 65543211000000
Q ss_pred CCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc-----------------CHHHHHHHHHHHhC
Q 013467 313 EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF-----------------TMLELAQVVQETID 371 (442)
Q Consensus 313 ~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~-----------------s~~dl~~~l~~~~g 371 (442)
........++.++|+|.++++++.... .| .+++.+|... +..|+++.+.+.++
T Consensus 238 ------~~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ 311 (322)
T 3qlj_A 238 ------ATQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLG 311 (322)
T ss_dssp ------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHH
T ss_pred ------hccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhh
Confidence 011122356788999999999987543 35 7777776543 77999999999988
Q ss_pred CC
Q 013467 372 PN 373 (442)
Q Consensus 372 ~~ 373 (442)
.+
T Consensus 312 ~~ 313 (322)
T 3qlj_A 312 KA 313 (322)
T ss_dssp HS
T ss_pred cc
Confidence 54
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=170.26 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=148.3
Q ss_pred cCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccc----cc---
Q 013467 108 IPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVE----PL--- 177 (442)
Q Consensus 108 ~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~----~~--- 177 (442)
.+....+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+ ..
T Consensus 15 ~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~ 94 (288)
T 2x9g_A 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCE 94 (288)
T ss_dssp -------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHH
T ss_pred CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHH
Confidence 333445667899999999999999999999999999999986411111111111 13467888999987 31
Q ss_pred ---------cCCCCEEEEecccCCCCcc-----c---------CChhHHHHHhHHHHHHHHHHHHHc----C------C-
Q 013467 178 ---------LLEVDQIYHLACPASPVHY-----K---------FNPVKTIKTNVVGTLNMLGLAKRV----G------A- 223 (442)
Q Consensus 178 ---------~~~~d~Vih~A~~~~~~~~-----~---------~~~~~~~~~nv~gt~~ll~~a~~~----g------~- 223 (442)
+.++|+||||||....... . +.+...+++|+.++.++++++... + .
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g 174 (288)
T 2x9g_A 95 EIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNL 174 (288)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCE
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCe
Confidence 2369999999997543222 1 235668899999999998887532 2 3
Q ss_pred eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCc
Q 013467 224 RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGR 300 (442)
Q Consensus 224 r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~ 300 (442)
+||++||...+. +......|+.+|++.+.+++.++.+. |+++.+|+||+++++. . . .
T Consensus 175 ~iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~-~- 234 (288)
T 2x9g_A 175 SIVNLCDAMVDQ----------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M-G- 234 (288)
T ss_dssp EEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S-C-
T ss_pred EEEEEecccccC----------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c-C-
Confidence 899999987652 22234689999999999999887764 8999999999999885 2 1 1
Q ss_pred hHHHHHHHHHcCCCcEEecCCceeEec-cCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 301 VVSNFVAQALRKEPLTVYGDGKQTRSF-QFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
......+....++ ..+ ...+|+|+++++++... ..| .+++.+|.
T Consensus 235 --~~~~~~~~~~~p~---------~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 283 (288)
T 2x9g_A 235 --EEEKDKWRRKVPL---------GRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGL 283 (288)
T ss_dssp --HHHHHHHHHTCTT---------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --hHHHHHHHhhCCC---------CCCCCCHHHHHHHHHHHhCccccCccCCEEEECcch
Confidence 1222222222211 124 67899999999999754 245 67676663
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=166.85 Aligned_cols=193 Identities=15% Similarity=0.042 Sum_probs=138.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 182 (442)
++++|+||||+|+||++++++|+++|++|++++|+..... .....+. .++.++.+|+.+.. +.++|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQ-QQELLLG-NAVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHG-GGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3578999999999999999999999999999999643222 1222221 25888999987752 23689
Q ss_pred EEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 183 ~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+||||||...... ..++++..+++|+.|+.++++++.. .+.++|++||...+. +..
T Consensus 80 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 143 (235)
T 3l6e_A 80 LVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------------GKA 143 (235)
T ss_dssp EEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS----------------SCS
T ss_pred EEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC----------------CCC
Confidence 9999999754322 2234677899999999999888743 223899999977542 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.. .... . .....+...+
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~--------~~~~-----~---------~~~~~~~~pe 201 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFW--------DNTD-----H---------VDPSGFMTPE 201 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------CBCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcch--------hccC-----C---------CCCcCCCCHH
Confidence 33679999999999999988764 89999999999977642 1100 0 0112578899
Q ss_pred HHHHHHHHHHcCCCCc
Q 013467 332 DLVEGLMRLMEGEHVG 347 (442)
Q Consensus 332 Dva~ai~~~l~~~~~g 347 (442)
|+|+++++++.++..+
T Consensus 202 dvA~~v~~l~~~~~~~ 217 (235)
T 3l6e_A 202 DAAAYMLDALEARSSC 217 (235)
T ss_dssp HHHHHHHHHTCCCSSE
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999999877654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=171.03 Aligned_cols=216 Identities=12% Similarity=-0.021 Sum_probs=150.2
Q ss_pred CCCCCEEEEEcCCch--hHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc------------
Q 013467 113 KRKGLRIVVTGGAGF--VGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~--lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------ 177 (442)
..++++|+||||+|+ ||++++++|+++|++|++++|+... .+...... ...++.++.+|+.+..
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL-KKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 356789999999988 9999999999999999999986321 11111110 1135788899987752
Q ss_pred cCCCCEEEEecccCCC----C----cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASP----V----HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~----~----~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|+||||||.... . ...+++...+++|+.++.++++++... +.++|++||...+.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------- 175 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----------- 175 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence 2369999999997541 1 122346778999999999999988753 23899999987652
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||++.++..... .....+........++
T Consensus 176 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~p~-------- 240 (293)
T 3grk_A 176 -----VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGI--GDFRYILKWNEYNAPL-------- 240 (293)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--------CCHHHHHHHHHHHSTT--------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcc--cchHHHHHHHHhcCCC--------
Confidence 22334789999999999999988764 89999999999998753211 1112222222222221
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
..+...+|+|+++++++.... .| .+++.+|..
T Consensus 241 -~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 241 -RRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276 (293)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCCHHHHHHHHHHHcCccccCCcceEEEECCCcc
Confidence 246678999999999997542 45 788877744
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=171.82 Aligned_cols=215 Identities=13% Similarity=0.042 Sum_probs=136.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----cc----CCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LL----LEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~----~~~d~Vih 186 (442)
||+|+||||+|+||++++++|+++|++|++++|+...... . +.+|+.+. .+ .++|+|||
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~ 68 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLVL 68 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 4689999999999999999999999999999986432211 0 34454432 22 45799999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCC-----CCCC-------
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKET-----YWGN------- 249 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~-----~~~~------- 249 (442)
|||.... ...++..+++|+.++.++++++. +.+. +||++||...+......+..+. ++..
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
T 1fjh_A 69 CAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145 (257)
T ss_dssp CCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhc
Confidence 9996431 23478899999999999998875 4454 9999999887732111111000 0000
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
..+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++..... ............ + ......
T Consensus 146 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----~--~~~~~~ 215 (257)
T 1fjh_A 146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG---LQDPRYGESIAK-----F--VPPMGR 215 (257)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------C--CCSTTS
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh---ccchhHHHHHHh-----c--ccccCC
Confidence 012123468999999999999988766 589999999999988753110 000010011100 0 011124
Q ss_pred ccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
+.+++|+|++++.++..+ ..| .+++.+|.
T Consensus 216 ~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~ 248 (257)
T 1fjh_A 216 RAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp CCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 788999999999999765 235 67776663
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-19 Score=166.99 Aligned_cols=214 Identities=10% Similarity=-0.013 Sum_probs=152.4
Q ss_pred CCCCEEEEEcCCch--hHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGF--VGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~--lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++|+||||+|+ ||.+++++|+++|++|++++|.. ..+..... .....+.++.+|+.+.. +
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVW 101 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHc
Confidence 45679999999966 99999999999999999999965 11111111 01235788999987752 2
Q ss_pred CCCCEEEEecccCCCC---------cccCChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCccccCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV---------HYKFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~---------~~~~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.++|+||||||..... ...+.+...+++|+.++.++++++... +.++|++||...+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 171 (280)
T 3nrc_A 102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK---------- 171 (280)
T ss_dssp SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS----------
T ss_pred CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc----------
Confidence 3689999999975431 122346678999999999999988643 34999999987652
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|..+..... .....+........++
T Consensus 172 ------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~p~------- 236 (280)
T 3nrc_A 172 ------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGI--SNFKKMLDYNAMVSPL------- 236 (280)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGC--TTHHHHHHHHHHHSTT-------
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcC--cchHHHHHHHHhcCCC-------
Confidence 2333478999999999999988765 489999999999998753211 1122333333322221
Q ss_pred eeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
..+..++|+|+++++++... ..| .+++.+|..
T Consensus 237 --~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 237 --KKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYH 272 (280)
T ss_dssp --CSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGG
T ss_pred --CCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCcc
Confidence 24667899999999998754 245 888887754
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-19 Score=166.35 Aligned_cols=215 Identities=18% Similarity=0.113 Sum_probs=147.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
+..++++++||||+|+||++++++|+++|++|++.++......+.+...+ ...++.++.+|+.+..
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999998665433333222211 2346788899987752
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+.++|+||||||........ +.++..+++|+.++.++++++... +.++|++||...+.
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 167 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL--------------- 167 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH---------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc---------------
Confidence 23699999999976443322 235678889999999999988654 23899999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+..... ........+.... ....+
T Consensus 168 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~---------p~~r~ 234 (267)
T 3u5t_A 168 -LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG---KSDEVRDRFAKLA---------PLERL 234 (267)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC--------------CHHHHHTSS---------TTCSC
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc---CCHHHHHHHHhcC---------CCCCC
Confidence 22233689999999999999998875 89999999999987642110 0011111222221 22357
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..++|+|+++++++.... .| .+++.+|
T Consensus 235 ~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 235 GTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp BCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred cCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 789999999999997653 45 6777655
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=167.66 Aligned_cols=211 Identities=16% Similarity=0.093 Sum_probs=145.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccc--ccc------------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDV--VEP------------ 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~--~~~------------ 176 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+ .+.
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998643221111110 0123567788887 443
Q ss_pred ccCCCCEEEEecccCCCC-cc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPV-HY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~-~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.+.++|+||||||..... .. .+.+...+++|+.++.++++++ ++.+. ++|++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 157 (252)
T 3f1l_A 89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ----------- 157 (252)
T ss_dssp HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-----------
Confidence 123699999999974321 11 1235678999999999999987 44554 999999987652
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC--CcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG--VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g--~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+.+ +++.+|.||.+..+. ........ ..
T Consensus 158 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~------------~~~~~~~~---------~~ 211 (252)
T 3f1l_A 158 -----GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM------------RASAFPTE---------DP 211 (252)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH------------HHHHCTTC---------CG
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch------------hhhhCCcc---------ch
Confidence 222346899999999999999988763 899999999887531 11111111 11
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccCHH
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFTML 360 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s~~ 360 (442)
..+...+|+|.++++++..+. .| .+++.+|...++.
T Consensus 212 ~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 212 QKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC------
T ss_pred hccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCCC
Confidence 246678999999999997653 35 7888888766554
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=162.81 Aligned_cols=194 Identities=19% Similarity=0.166 Sum_probs=140.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------c--CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------L--LE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~--~~ 180 (442)
++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.+|+.+.. + .+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~ 72 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQGSQ 72 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3568999999999999999999999999999999644321 12456677776541 1 37
Q ss_pred CCEEEEecccCCCCcc-----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY-----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~-----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|+||||||....... .+.++..+++|+.++.++++++... +.+||++||...+. +
T Consensus 73 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------~ 136 (236)
T 1ooe_A 73 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------P 136 (236)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------------C
Confidence 9999999997543222 2236778999999999999988763 23899999987662 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||++.++. ........ ....+
T Consensus 137 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~------------~~~~~~~~---------~~~~~ 195 (236)
T 1ooe_A 137 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM------------NRKWMPNA---------DHSSW 195 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH------------HHHHSTTC---------CGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc------------hhhcCCCc---------ccccc
Confidence 2234689999999999999988764 4999999999988752 11111111 12246
Q ss_pred cCHHHHHHHHHHHHcCC----CCc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGE----HVG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~----~~g-~~~i~~~ 354 (442)
++.+|+|++++.++..+ ..| .+++.++
T Consensus 196 ~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg 227 (236)
T 1ooe_A 196 TPLSFISEHLLKWTTETSSRPSSGALLKITTE 227 (236)
T ss_dssp BCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCcccccccEEEEecC
Confidence 77899999999777332 235 6666554
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=170.06 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=136.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
..+++++||||+|+||++++++|+++|++|++++|+.....+ ....+ ..++.++.+|+.+.. +.++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 103 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQE-TAAEI-GDDALCVPTDVTDPDSVRALFTATVEKFGRV 103 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-TSCCEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh-CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999999999999999986432211 11111 246788899987752 2379
Q ss_pred CEEEEecccCCCC-c----ccCChhHHHHHhHHHHHHHHHHHH----HcC---CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAK----RVG---ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 182 d~Vih~A~~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
|+||||||..... . ..++++..+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 104 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------------- 169 (272)
T 4dyv_A 104 DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS-------------- 169 (272)
T ss_dssp CEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS--------------
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC--------------
Confidence 9999999975431 1 123467789999999888887663 333 3899999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|..+... .+...... . ........
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~--------~~~~~~~~----~--~~~~~~~~ 233 (272)
T 4dyv_A 170 --PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQ--------KMKAGVPQ----A--DLSIKVEP 233 (272)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC------------------------------------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhh--------hhcccchh----h--hhcccccC
Confidence 2333478999999999999998776 4899999999999876421 11000000 0 00112235
Q ss_pred ccCHHHHHHHHHHHHcCCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~ 346 (442)
+..++|+|+++++++..+..
T Consensus 234 ~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 234 VMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp --CHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHhCCCCc
Confidence 78999999999999997754
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-19 Score=162.41 Aligned_cols=194 Identities=14% Similarity=0.022 Sum_probs=139.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccccccc-----c-------CCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEPL-----L-------LEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~-----~-------~~~ 181 (442)
|++|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. + .++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV 81 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999998643222111110 12357888999987752 2 269
Q ss_pred CEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 182 d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
|+||||||....... .+++...+++|+.++.++++++.. .+.++|++||...+. +.
T Consensus 82 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~----------------~~ 145 (235)
T 3l77_A 82 DVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR----------------LI 145 (235)
T ss_dssp SEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------------CC
T ss_pred CEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc----------------cC
Confidence 999999997654332 234677899999999999988753 345777777765431 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh-cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~-~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
.....|+.+|++.+.+++.+..+ .|+++.+++||.+..+..... . .......+...+|
T Consensus 146 ~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~-------------~--------~~~~~~~~~~p~d 204 (235)
T 3l77_A 146 PYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK-------------P--------GKPKEKGYLKPDE 204 (235)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC-------------S--------CCCGGGTCBCHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc-------------C--------CcccccCCCCHHH
Confidence 22367999999999999987443 489999999999877532100 0 0011125778999
Q ss_pred HHHHHHHHHcCCCC
Q 013467 333 LVEGLMRLMEGEHV 346 (442)
Q Consensus 333 va~ai~~~l~~~~~ 346 (442)
+|+++++++..+..
T Consensus 205 va~~v~~l~~~~~~ 218 (235)
T 3l77_A 205 IAEAVRCLLKLPKD 218 (235)
T ss_dssp HHHHHHHHHTSCTT
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999988753
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=166.19 Aligned_cols=196 Identities=14% Similarity=0.008 Sum_probs=137.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------cCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~ 180 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +.+
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 106 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR 106 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 45679999999999999999999999999999998643222111111 02346888999987652 236
Q ss_pred CCEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|+||||||.... .. ..+++...+++|+.++.++++++. +.+. +||++||...+
T Consensus 107 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~---------------- 170 (262)
T 3rkr_A 107 CDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK---------------- 170 (262)
T ss_dssp CSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS----------------
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc----------------
Confidence 9999999997322 11 123366789999999999988764 3444 99999998765
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+.. ..+ . .......+
T Consensus 171 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~--------~~~----~---------~~~~~~~~ 229 (262)
T 3rkr_A 171 NPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFG--------VGL----S---------AKKSALGA 229 (262)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------------C
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcc--------ccc----c---------cccccccC
Confidence 23334478999999999999988765 489999999999876531 010 0 00122356
Q ss_pred cCHHHHHHHHHHHHcCCCC
Q 013467 328 QFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~~ 346 (442)
+..+|+|+++++++..+..
T Consensus 230 ~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 230 IEPDDIADVVALLATQADQ 248 (262)
T ss_dssp CCHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHhcCccc
Confidence 7899999999999987654
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=164.93 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=146.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh-CCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c-----CCCCE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L-----LEVDQ 183 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~-~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-----~~~d~ 183 (442)
++|+|+||||+|+||++++++|++ .|+.|++.+|..... ...+.++.+|+.+.. + .++|+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~ 73 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFDG 73 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCCE
Confidence 467899999999999999999999 789999998854321 134578888887641 1 26899
Q ss_pred EEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 184 Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
||||||....... .++++..+++|+.++.++++++...- .++|++||...+. +....
T Consensus 74 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~ 137 (244)
T 4e4y_A 74 IFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI----------------AKPNS 137 (244)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC----------------CCTTB
T ss_pred EEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc----------------CCCCC
Confidence 9999997544322 22467789999999999999987642 3799999987652 22234
Q ss_pred ChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHH-----------HHHHHHcCCCcEEecCCc
Q 013467 257 SCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSN-----------FVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 322 (442)
..|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++.. ...... ........ .
T Consensus 138 ~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 204 (244)
T 4e4y_A 138 FAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLY----RNLIQKYANNVGISFDEAQKQEEKE---------F 204 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHH----HHHHHHHHHHHTCCHHHHHHHHHTT---------S
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhh----HHHHHhhhhhcCCCHHHHHHHHhhc---------C
Confidence 68999999999999998874 489999999999987632 001111 11111111 1
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
....+.+++|+|+++++++..+. .| .+++.+|.
T Consensus 205 p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 205 PLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGY 241 (244)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCc
Confidence 22357789999999999997543 35 78877664
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=166.00 Aligned_cols=220 Identities=12% Similarity=0.029 Sum_probs=150.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc---cCCCceeEEeccccccc------------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH---FGNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~------------ 177 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+..
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999998643222111111 12335888999987752
Q ss_pred cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|+||||||....... .+++...+++|+.++.++++++.. .+. ++|++||...+.
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ------------- 151 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-------------
Confidence 2368999999997544322 234677899999999999998743 344 899999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--C----CCchHHHHHHHHHcCCCcEEec
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--D----DGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+.++.... . .......+.........
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (265)
T 3lf2_A 152 ---PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQ----- 223 (265)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTT-----
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccC-----
Confidence 22334789999999999999988764 8999999999998753100 0 00000111111111100
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.....+...+|+|+++++++.... .| .+++.+|.
T Consensus 224 --~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 224 --IPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGL 261 (265)
T ss_dssp --CTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSC
T ss_pred --CCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCC
Confidence 112356789999999999997543 46 77777664
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=170.23 Aligned_cols=197 Identities=11% Similarity=-0.013 Sum_probs=143.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 177 (442)
....+++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+..
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE-ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 105 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHH-HHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999998643211 111111 1246888999987642
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
+.++|+||||||........ +++...+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 173 (272)
T 1yb1_A 106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS------------ 173 (272)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC------------
T ss_pred CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC------------
Confidence 23699999999975433221 235678999999988877765 34565 9999999876531
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc------CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA------GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~------g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
......|+.+|.+.|.+++.++.+. |+++++|+||++.++... ... .
T Consensus 174 ----~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~---~~~--------------------~ 226 (272)
T 1yb1_A 174 ----VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK---NPS--------------------T 226 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT---CTH--------------------H
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc---ccc--------------------c
Confidence 1123679999999999999887764 899999999999876421 000 0
Q ss_pred eeEeccCHHHHHHHHHHHHcCCCCcc
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~~g~ 348 (442)
....+++++|+|++++.++.++...+
T Consensus 227 ~~~~~~~~~dva~~i~~~~~~~~~~~ 252 (272)
T 1yb1_A 227 SLGPTLEPEEVVNRLMHGILTEQKMI 252 (272)
T ss_dssp HHCCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 12347789999999999998776543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-19 Score=161.43 Aligned_cols=193 Identities=14% Similarity=0.055 Sum_probs=136.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----c----CCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----L----LEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~----~~~d~Vih 186 (442)
||+|+||||+|+||++++++|+++|++|++++|+..... .....+ ..++.++.+|+.+.. + ...|+|||
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLS-TVTNCL-SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHHHTC-SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHH-hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999999999998643221 111221 346778888987652 1 22499999
Q ss_pred ecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 187 LACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 187 ~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
|||........ +++...+++|+.++.++++++... +.++|++||...+. +......
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~~ 142 (230)
T 3guy_A 79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----------------PKAQEST 142 (230)
T ss_dssp CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS----------------CCTTCHH
T ss_pred eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC----------------CCCCCch
Confidence 99975443322 235678999999999999987543 33899999987652 2233478
Q ss_pred hHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.. ... .. ......+.+++|+|+
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~--------~~~----~~---------~~~~~~~~~~~dvA~ 201 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFW--------ETS----GK---------SLDTSSFMSAEDAAL 201 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------------CCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHH--------Hhc----CC---------CCCcccCCCHHHHHH
Confidence 9999999999999998775 89999999999876532 110 00 012346788999999
Q ss_pred HHHHHHcCCCCc
Q 013467 336 GLMRLMEGEHVG 347 (442)
Q Consensus 336 ai~~~l~~~~~g 347 (442)
+++.++.++..+
T Consensus 202 ~i~~l~~~~~~~ 213 (230)
T 3guy_A 202 MIHGALANIGNG 213 (230)
T ss_dssp HHHHHCCEETTE
T ss_pred HHHHHHhCcCCC
Confidence 999999876654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=168.27 Aligned_cols=217 Identities=21% Similarity=0.191 Sum_probs=152.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc-----------cCC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-----------LLE 180 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~ 180 (442)
...++++|+||||+|+||++++++|+++|++|++++|+..... .+...+ ..++.++.+|+.+.. +.+
T Consensus 26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 103 (281)
T 3ppi_A 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGK-ALADEL-GNRAEFVSTNVTSEDSVLAAIEAANQLGR 103 (281)
T ss_dssp GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-CTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 3456779999999999999999999999999999998643222 122222 346888999987642 135
Q ss_pred CCEEEEe-cccCCCCcc------c---CChhHHHHHhHHHHHHHHHHHHH----------cCC-eEEEeecCccccCCCC
Q 013467 181 VDQIYHL-ACPASPVHY------K---FNPVKTIKTNVVGTLNMLGLAKR----------VGA-RFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 181 ~d~Vih~-A~~~~~~~~------~---~~~~~~~~~nv~gt~~ll~~a~~----------~g~-r~i~iSS~~vy~~~~~ 239 (442)
+|+|||| |+....... . +.+...+++|+.++.++++++.. .+. +||++||...+.
T Consensus 104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 179 (281)
T 3ppi_A 104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE---- 179 (281)
T ss_dssp EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS----
T ss_pred CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC----
Confidence 8999999 443322211 1 12578899999999999987752 233 899999988662
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.|..+.... .............++
T Consensus 180 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~- 242 (281)
T 3ppi_A 180 ------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES----VGEEALAKFAANIPF- 242 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----TCHHHHHHHHHTCCS-
T ss_pred ------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc----ccHHHHHHHHhcCCC-
Confidence 22334789999999999998887764 8999999999998753211 112222333333221
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFT 358 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s 358 (442)
...+.+++|+|+++++++.++. .| .+++.+|..++
T Consensus 243 -------~~~~~~pedvA~~v~~l~s~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 -------PKRLGTPDEFADAAAFLLTNGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp -------SSSCBCHHHHHHHHHHHHHCSSCCSCEEEESTTCCCC
T ss_pred -------CCCCCCHHHHHHHHHHHHcCCCcCCcEEEECCCcccC
Confidence 1357889999999999998654 35 78888776554
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=167.29 Aligned_cols=218 Identities=17% Similarity=0.139 Sum_probs=149.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.... +.....+ .++.++.+|+.+.. +.++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 83 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG-RALEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFGRL 83 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4567999999999999999999999999999999853221 1111111 24788889987652 2369
Q ss_pred CEEEEecccCCC-Ccc----cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~-~~~----~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||.... ... .++++..+++|+.++.++++++.. .+.++|++||...+. +
T Consensus 84 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 147 (270)
T 1yde_A 84 DCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI----------------G 147 (270)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------C
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC----------------C
Confidence 999999997532 111 123677899999999999988753 345999999976431 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCcc---CCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCI---DDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|...+.+++.++.+ .|+++.+|+||+++++.... ........+ .......+ ...
T Consensus 148 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~-~~~~~~~p---------~~r 217 (270)
T 1yde_A 148 QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASI-REGMLAQP---------LGR 217 (270)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHH-HHHHHTST---------TSS
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHH-HHHhhcCC---------CCC
Confidence 112367999999999999998765 58999999999999863110 000000111 11111111 124
Q ss_pred ccCHHHHHHHHHHHHcCC--CCc-cEEecCCCccCHH
Q 013467 327 FQFVSDLVEGLMRLMEGE--HVG-PFNLGNPGEFTML 360 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~--~~g-~~~i~~~~~~s~~ 360 (442)
+...+|+|+++++++.+. ..| .+++.+|..+.+.
T Consensus 218 ~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~ 254 (270)
T 1yde_A 218 MGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYG 254 (270)
T ss_dssp CBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC-
T ss_pred CcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccC
Confidence 678999999999988642 235 7888887665543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=163.23 Aligned_cols=214 Identities=15% Similarity=0.083 Sum_probs=141.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc-------ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP-------LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~-------~~~~~d~Vih~ 187 (442)
||+|+||||+|+||++++++|+++|++|++++|+...... ..... ...++..++.+..+. .+.++|+||||
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~n 79 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDE-LEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSN 79 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHH-HHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 4689999999999999999999999999999986432211 11100 011222222222222 22479999999
Q ss_pred cccC-CCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPA-SPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 188 A~~~-~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
||.. ..... .++++..+++|+.++.++++++. +.+. ++|++||...+. +.....
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~~~~ 143 (254)
T 1zmt_A 80 DIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWKELS 143 (254)
T ss_dssp CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCTTCH
T ss_pred CCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc----------------CCCCch
Confidence 9975 32221 12367789999999999888773 4444 999999987652 222346
Q ss_pred hhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCC-CchH---HHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 258 CYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDD-GRVV---SNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
.|+.+|.+.+.+++.++.+. |+++.+|+||.++|+...... ..+. ........... ....+...
T Consensus 144 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~---------p~~~~~~p 214 (254)
T 1zmt_A 144 TYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT---------ALQRLGTQ 214 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS---------SSSSCBCH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC---------CCCCCcCH
Confidence 89999999999999987764 899999999999887532110 1000 11111111111 11246789
Q ss_pred HHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 331 SDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+|+|+++++++..+. .| .+++.+|.
T Consensus 215 ~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 215 KELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred HHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 999999999998654 35 77777664
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=167.60 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=146.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
+|+++||||+|+||++++++|+++| +.|++.+|+.... +.+...+ ..++.++.+|+.+.. +.++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPL-KKLKEKY-GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHH-HHHHHHH-GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHH-HHHHHHh-CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence 4689999999999999999999985 6888888853221 1111111 246788999987752 2369
Q ss_pred CEEEEecccCCC-Cc----ccCChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASP-VH----YKFNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~-~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|+||||||.... .. ..++++..+++|+.++.++++++ ++.+.++|++||...+. +
T Consensus 80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~----------------~ 143 (254)
T 3kzv_A 80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM----------------Y 143 (254)
T ss_dssp CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC----------------S
T ss_pred cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc----------------C
Confidence 999999997533 11 12346778999999999999887 55556999999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc-CCcEEEEeeCceeCCCCccCCCc-----hHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRMCIDDGR-----VVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+........ .-......+....+ ...
T Consensus 144 ~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~r 214 (254)
T 3kzv_A 144 FSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE---------NNQ 214 (254)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT---------TC-
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh---------cCC
Confidence 3334789999999999999998775 89999999999998754211000 01122222222111 124
Q ss_pred ccCHHHHHHHHHHHHcCCC----Cc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH----VG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~----~g-~~~i~~~~ 355 (442)
+.+.+|+|+++++++..+. .| .+++.+++
T Consensus 215 ~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~ 248 (254)
T 3kzv_A 215 LLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPA 248 (254)
T ss_dssp ---CHHHHHHHHHHHHHCCCGGGTTCEEETTCGG
T ss_pred cCCcccHHHHHHHHHhhcccCCCCccEEEecCcc
Confidence 6678999999999987662 35 66666554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=165.17 Aligned_cols=201 Identities=11% Similarity=0.079 Sum_probs=138.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 180 (442)
++++|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIE-AIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999998643221 111111 1346778889987752 236
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||....... .+++...+++|+.|+.++++++. +.+. ++|++||...+.
T Consensus 82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------------- 145 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS---------------- 145 (264)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc----------------
Confidence 9999999997544322 23467789999999998887763 3454 999999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc-CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.|..+... .+.. ......... ....+...
T Consensus 146 ~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~--------~~~~----~~~~~~~~~--~~~~~~~p 211 (264)
T 3tfo_A 146 VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAG--------TITH----EETMAAMDT--YRAIALQP 211 (264)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------------------CCCH
T ss_pred cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccc--------cccc----hhHHHHHHh--hhccCCCH
Confidence 22234679999999999999988775 899999999998876421 1000 000000000 11124689
Q ss_pred HHHHHHHHHHHcCCCC
Q 013467 331 SDLVEGLMRLMEGEHV 346 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~~ 346 (442)
+|+|+++++++..+..
T Consensus 212 edvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 212 ADIARAVRQVIEAPQS 227 (264)
T ss_dssp HHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCCcc
Confidence 9999999999998765
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-18 Score=157.03 Aligned_cols=208 Identities=14% Similarity=0.124 Sum_probs=149.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~Vih 186 (442)
++|+++||||++.||+.+++.|+++|.+|++.+|+.+...+ ....++..+.+|+.++ .+.++|++||
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-----PRHPRIRREELDITDSQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-----CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-----hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 57799999999999999999999999999999996543222 1235778889998775 3457999999
Q ss_pred ecccCCCCc--ccCChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhH
Q 013467 187 LACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 187 ~A~~~~~~~--~~~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
|||...+.. ..++++..+++|+.++..+.+++. +.+-++|++||..... +......|+
T Consensus 85 NAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~~~~~~~Y~ 148 (242)
T 4b79_A 85 NAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------GSADRPAYS 148 (242)
T ss_dssp CCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------CCSSCHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------CCCCCHHHH
Confidence 999755432 123478899999999888877653 3345999999987541 222336899
Q ss_pred HHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 261 EGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
.+|.....+++.++.+. |+++..|.||.|..|........ ......+....++. .+...+|+|.++
T Consensus 149 asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~--~~~~~~~~~~~Plg---------R~g~peeiA~~v 217 (242)
T 4b79_A 149 ASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKAD--VEATRRIMQRTPLA---------RWGEAPEVASAA 217 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCC--HHHHHHHHHTCTTC---------SCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCC--HHHHHHHHhcCCCC---------CCcCHHHHHHHH
Confidence 99999999999988764 89999999999987743211111 22333444443332 355679999999
Q ss_pred HHHHcCCC---Cc-cEEecCC
Q 013467 338 MRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 338 ~~~l~~~~---~g-~~~i~~~ 354 (442)
++++.... +| .+.+.+|
T Consensus 218 ~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 218 AFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHTSGGGTTCCSCEEEESTT
T ss_pred HHHhCchhcCccCceEEECcc
Confidence 99986543 45 6666655
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=160.32 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=142.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLR-ALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34679999999999999999999999999999998632211 111111 1246788899987752 23
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|+||||||........ ++++..+++|+.|+.++++++.. .+.++|++||...+.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (247)
T 2jah_A 84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV---------------- 147 (247)
T ss_dssp CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC----------------
Confidence 799999999975433222 23567899999999999888743 335899999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|+||++.++................. + +. ..+.
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~----~----~~----~~~~ 215 (247)
T 2jah_A 148 NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQR----I----SQ----IRKL 215 (247)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHH----T----TT----SCCB
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHhc----c----cc----cCCC
Confidence 2223468999999999999888765 489999999999988743111111111111110 0 00 1157
Q ss_pred CHHHHHHHHHHHHcCCCC
Q 013467 329 FVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~~ 346 (442)
..+|+|+++++++..+..
T Consensus 216 ~pedvA~~v~~l~s~~~~ 233 (247)
T 2jah_A 216 QAQDIAEAVRYAVTAPHH 233 (247)
T ss_dssp CHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHhCCCcc
Confidence 899999999999987643
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-19 Score=169.18 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=151.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC--------cccccc---c--cCCCceeEEeccccccc---
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR--------KENVMH---H--FGNPNFELIRHDVVEPL--- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~--------~~~~~~---~--~~~~~v~~~~~D~~~~~--- 177 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.... .+.+.. . ....++.++.+|+.+..
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 4577999999999999999999999999999998863221 111111 0 12346788999987752
Q ss_pred ---------cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCC
Q 013467 178 ---------LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPL 238 (442)
Q Consensus 178 ---------~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~ 238 (442)
+.++|+||||||....... .+++...+++|+.++.++++++. +.+ .+||++||...+.
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~--- 200 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR--- 200 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC---
Confidence 2369999999997654322 23467789999999999988773 333 3899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCc
Q 013467 239 QHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL 315 (442)
Q Consensus 239 ~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 315 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||+|.++... . ..+...+......
T Consensus 201 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~--~----~~~~~~~~~~~~~ 261 (317)
T 3oec_A 201 -------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMAL--N----EKLLKMFLPHLEN 261 (317)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH--C----HHHHHHHCTTCSS
T ss_pred -------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcccc--c----hhhhhhhhhhccc
Confidence 22234689999999999999988764 899999999999886321 0 0011111000000
Q ss_pred E-------Ee-cCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 316 T-------VY-GDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 316 ~-------~~-~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
. .+ ........|++++|+|+++++++.... .| .+++.+|..
T Consensus 262 ~~~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 262 PTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp CCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred cchhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 0 00 000111468899999999999986543 45 788887743
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=168.38 Aligned_cols=212 Identities=12% Similarity=0.026 Sum_probs=149.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEe-CCCCCCcccccccc---CCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD-NFFTGRKENVMHHF---GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~-r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------ 177 (442)
+++++|+||||+|+||++++++|+++|++|++++ |+.... +.....+ ...++.++.+|+.+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA-NALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 4568999999999999999999999999999999 753221 1111111 1246788888887654
Q ss_pred -----------------cCCCCEEEEecccCCCCcc------------------cCChhHHHHHhHHHHHHHHHHHH---
Q 013467 178 -----------------LLEVDQIYHLACPASPVHY------------------KFNPVKTIKTNVVGTLNMLGLAK--- 219 (442)
Q Consensus 178 -----------------~~~~d~Vih~A~~~~~~~~------------------~~~~~~~~~~nv~gt~~ll~~a~--- 219 (442)
+.++|+||||||....... .+.+...+++|+.++.++++++.
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1269999999997543222 22355688999999999988774
Q ss_pred -HcC------C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCc
Q 013467 220 -RVG------A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFN 288 (442)
Q Consensus 220 -~~g------~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~ 288 (442)
+.+ . +||++||...+. +......|+.+|++.+.+++.++.+. |+++.+|+||+
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~ 266 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 266 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HhcCCcCCCCCcEEEEECchhhcc----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCc
Confidence 334 4 899999987652 22234689999999999999987764 89999999999
Q ss_pred eeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 289 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
|.++. . . . ......+....++. ..+...+|+|+++++++..+ ..| .+++.+|..
T Consensus 267 v~T~~-~-~---~-~~~~~~~~~~~p~~--------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 267 SVLVD-D-M---P-PAVWEGHRSKVPLY--------QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 324 (328)
T ss_dssp BSCCC-C-S---C-HHHHHHHHTTCTTT--------TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCCc-c-c---c-HHHHHHHHhhCCCC--------CCCCCHHHHHHHHHHHhCccccCccCcEEEECCCcc
Confidence 99875 1 1 1 22333333222110 03667899999999999643 245 777776643
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=167.55 Aligned_cols=217 Identities=15% Similarity=0.055 Sum_probs=150.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEecccccccc-----------CC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPLL-----------LE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~-----------~~ 180 (442)
..++++++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+... .+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 456789999999999999999999999999999999654433222111 123568889999877521 36
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|+||||||........ ++++..+++|+.|+.++++++ ++.+. ++|++||...+.
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 173 (275)
T 4imr_A 110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR---------------- 173 (275)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------
Confidence 99999999975443322 246678999999999998887 44454 999999987652
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+....... ............. .....+.
T Consensus 174 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~--------~p~~r~~ 244 (275)
T 4imr_A 174 PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRA-QDPEGWDEYVRTL--------NWMGRAG 244 (275)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHH-HCHHHHHHHHHHH--------STTCSCB
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccc-cChHHHHHHHhhc--------CccCCCc
Confidence 22223569999999999999988765 8999999999998753100000 0001111111111 0112355
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|+|+++++++.... .| .+++.+|
T Consensus 245 ~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 245 RPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp CGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred CHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 68999999999997643 45 7777655
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=162.79 Aligned_cols=206 Identities=16% Similarity=0.096 Sum_probs=138.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~V 184 (442)
|+++||||+|+||++++++|+++|++|++++|+.... +.....+. .++.++.+|+.+.. +.++|+|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL-QELKDELG-DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHC-TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4799999999999999999999999999999853221 11212222 36788889987641 2369999
Q ss_pred EEecccCC-CCc----ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPAS-PVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~~~-~~~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||||... ... ..+++...+++|+.|+.++++++. +.+. +||++||...+. +..
T Consensus 79 vnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~~ 142 (248)
T 3asu_A 79 VNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PYA 142 (248)
T ss_dssp EECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------CCT
T ss_pred EECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc----------------CCC
Confidence 99999752 111 123467789999999999888774 4454 999999987652 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeC-CCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYG-PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 330 (442)
....|+.+|...+.+++.++.+. |+++.+|+||.+.| +... ..+... ..... . .+ ....++..
T Consensus 143 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~---~~~~~~--~~~~~--~--~~----~~~~~~~p 209 (248)
T 3asu_A 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSN---VRFKGD--DGKAE--K--TY----QNTVALTP 209 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------CCBCH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchh---hcccCc--hHHHH--H--HH----hccCCCCH
Confidence 34689999999999999987764 89999999999995 4210 000000 00000 0 00 01234689
Q ss_pred HHHHHHHHHHHcCCC--Cc-cEEecC
Q 013467 331 SDLVEGLMRLMEGEH--VG-PFNLGN 353 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~--~g-~~~i~~ 353 (442)
+|+|+++++++..+. .+ .+.+..
T Consensus 210 ~dvA~~v~~l~s~~~~~~g~~i~v~~ 235 (248)
T 3asu_A 210 EDVSEAVWWVSTLPAHVNINTLEMMP 235 (248)
T ss_dssp HHHHHHHHHHHHSCTTCCCCEEEECC
T ss_pred HHHHHHHHHHhcCCccceeeEEEEcc
Confidence 999999999998653 23 455443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-19 Score=168.53 Aligned_cols=205 Identities=13% Similarity=0.051 Sum_probs=140.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~------------ 177 (442)
.++++|+||||+|+||++++++|+++|++|++++|+..... .+...+ ....+.++.+|+.+..
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHH-HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999998532211 111111 1135778889987652
Q ss_pred cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHH----HHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVG----TLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~g----t~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|+||||||....... .+++...+++|+.+ ++.+++.+++.+ .+||++||...+..
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~---------- 178 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------- 178 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC----------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc----------
Confidence 1269999999997543322 22366789999999 677777777776 48999999887632
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
.+......|+.+|.+.+.+++.++.+ .++++.+|+||.+.++............+ ...
T Consensus 179 ----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~----~~~--------- 241 (279)
T 1xg5_A 179 ----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKA----AAT--------- 241 (279)
T ss_dssp ----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHH----HHH---------
T ss_pred ----CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHH----hhh---------
Confidence 12223367999999999998887654 47999999999998763100000000000 000
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
.....+++++|+|+++++++..+..
T Consensus 242 ~~~~~~~~~~dvA~~i~~l~~~~~~ 266 (279)
T 1xg5_A 242 YEQMKCLKPEDVAEAVIYVLSTPAH 266 (279)
T ss_dssp HC---CBCHHHHHHHHHHHHHSCTT
T ss_pred cccccCCCHHHHHHHHHHHhcCCcc
Confidence 0122478899999999999987643
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-19 Score=163.45 Aligned_cols=196 Identities=14% Similarity=0.056 Sum_probs=139.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc---cc-CCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH---HF-GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~---~~-~~~~v~~~~~D~~~~~------------ 177 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+.... .. ...++.++.+|+.+..
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999999999999999864322211111 10 1256788999987742
Q ss_pred cCCCCEEEEecccCCCCccc---CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~---~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+.++|+||||||........ +++...+++|+.++.++++++ ++.+. ++|++||...+.
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 150 (250)
T 3nyw_A 85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY-------------- 150 (250)
T ss_dssp HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------
T ss_pred cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC--------------
Confidence 23699999999975443332 235678999999999998887 44554 999999977541
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+..+...|+.+|.+.+.+++.++.+. |+++.+|+||.+..+. .... ... .....
T Consensus 151 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------------~~~~--~~~-------~~~~~ 207 (250)
T 3nyw_A 151 --GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM------------AKKA--GTP-------FKDEE 207 (250)
T ss_dssp ----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH------------HHHT--TCC-------SCGGG
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch------------hhhc--CCC-------ccccc
Confidence 12224789999999999999987764 8999999999987642 1111 111 12235
Q ss_pred ccCHHHHHHHHHHHHcCCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~ 346 (442)
+++.+|+|+++++++..+..
T Consensus 208 ~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 208 MIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp SBCHHHHHHHHHHHHTSCTT
T ss_pred CCCHHHHHHHHHHHHcCCCc
Confidence 78999999999999987654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=166.51 Aligned_cols=204 Identities=15% Similarity=0.065 Sum_probs=139.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++++++||||+|+||++++++|+++|++|++++|+.....+..... .....+.++.+|+.+.. +.
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 110 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA 110 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999998643221111110 01223578899987752 23
Q ss_pred CCCEEEEecccCCCC-c----ccCChhHHHHHhHHHHHHHHHHHH----HcC---CeEEEeecCccccCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAK----RVG---ARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~----~~g---~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
++|+||||||..... . ..++++..+++|+.++.++++++. +.+ .++|++||...+
T Consensus 111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~------------- 177 (281)
T 4dry_A 111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ------------- 177 (281)
T ss_dssp CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT-------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC-------------
Confidence 689999999975331 1 123467789999999888877663 333 389999998765
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|+||.|..+.. ..+ ... ..........
T Consensus 178 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~--------~~~----~~~--~~~~~~~~~~ 240 (281)
T 4dry_A 178 ---TPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMT--------ARM----STG--VLQANGEVAA 240 (281)
T ss_dssp ---CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------------------CE--EECTTSCEEE
T ss_pred ---CCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhh--------hhh----cch--hhhhhhcccc
Confidence 23334478999999999999998765 489999999999887532 111 000 0000011122
Q ss_pred EeccCHHHHHHHHHHHHcCCCCc
Q 013467 325 RSFQFVSDLVEGLMRLMEGEHVG 347 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~~g 347 (442)
..+...+|+|+++++++..+...
T Consensus 241 ~~~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 241 EPTIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp CCCBCHHHHHHHHHHHHHSCTTE
T ss_pred cCCCCHHHHHHHHHHHhCCCccC
Confidence 35789999999999999988653
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=159.45 Aligned_cols=194 Identities=18% Similarity=0.121 Sum_probs=140.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----c-------c--CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----L-------L--LE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~-------~--~~ 180 (442)
++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.+|+.+. . + .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~ 76 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGDQK 76 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999999999643321 1245567777654 1 1 37
Q ss_pred CCEEEEecccCCCCcc-----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY-----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~-----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
+|+||||||....... .+.++..+++|+.++.++++++... +.+||++||...+. +
T Consensus 77 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 140 (241)
T 1dhr_A 77 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD----------------G 140 (241)
T ss_dssp EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred CCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc----------------C
Confidence 9999999997543222 1235678899999999999988764 24899999987663 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+. ........ ....+
T Consensus 141 ~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~------------~~~~~~~~---------~~~~~ 199 (241)
T 1dhr_A 141 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFSSW 199 (241)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGGGS
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc------------ccccCcch---------hhccC
Confidence 2233689999999999999987753 6999999999887642 11111111 11245
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++.+|+|++++.++.... .| .+++.++
T Consensus 200 ~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~ 230 (241)
T 1dhr_A 200 TPLEFLVETFHDWITGNKRPNSGSLIQVVTT 230 (241)
T ss_dssp EEHHHHHHHHHHHHTTTTCCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcCccceEEEEeCC
Confidence 678999999999997643 35 6666554
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=161.79 Aligned_cols=217 Identities=11% Similarity=-0.007 Sum_probs=153.2
Q ss_pred CCCCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEeccccccc---------
Q 013467 112 LKRKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEPL--------- 177 (442)
Q Consensus 112 ~~~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~--------- 177 (442)
...++++|+||||+ |+||.+++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+..
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 34567899999999 999999999999999999999987544312211111 1356888889987652
Q ss_pred ---cCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCC
Q 013467 178 ---LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 178 ---~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+.++|+||||||....... .+++...+++|+.++.++++++ ++.+. ++|++||...+...
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 167 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN-------- 167 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC--------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC--------
Confidence 2368999999997654322 2346778999999999998887 44554 99999997754211
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcC--CcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG--VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g--~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.......|+.+|.+.+.+++.++.+.+ +++.++.||.+..+..... .......+.... .
T Consensus 168 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~---------~ 228 (267)
T 3gdg_A 168 ------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV----PKETQQLWHSMI---------P 228 (267)
T ss_dssp ------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS----CHHHHHHHHTTS---------T
T ss_pred ------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC----CHHHHHHHHhcC---------C
Confidence 112346799999999999999988763 7899999999987643111 122222222221 2
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
...+.+++|+|+++++++.... .| .+++.+|.
T Consensus 229 ~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~ 264 (267)
T 3gdg_A 229 MGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGY 264 (267)
T ss_dssp TSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHhHhheeecCccccccCCEEEECCce
Confidence 2346678999999999997643 35 78887764
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=161.49 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=142.5
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc------ccccc--CCCceeEEeccccccc-----
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHF--GNPNFELIRHDVVEPL----- 177 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~--~~~~v~~~~~D~~~~~----- 177 (442)
.+..++++++||||+|+||++++++|+++|++|++++|+.....+. ....+ ...++.++.+|+.+..
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 3456678999999999999999999999999999999975532211 11111 1346888999987752
Q ss_pred -------cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----CC-eEEEeecCccccCCCCCC
Q 013467 178 -------LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHP 241 (442)
Q Consensus 178 -------~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g~-r~i~iSS~~vy~~~~~~~ 241 (442)
+.++|++|||||........ +.++..+++|+.++.++++++... +. ++|++||...+..
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----- 158 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP----- 158 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-----
Confidence 23799999999976543322 235678889999999999988543 43 9999999765421
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEe
Q 013467 242 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 318 (442)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (442)
.......|+.+|.+.+.+++.++.+ .|+++.+|+||++... .+.........
T Consensus 159 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t-----------~~~~~~~~~~~---- 213 (285)
T 3sc4_A 159 ----------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT-----------AAVQNLLGGDE---- 213 (285)
T ss_dssp ----------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC-----------HHHHHHHTSCC----
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc-----------HHHHhhccccc----
Confidence 1122368999999999999998876 5899999999853321 11222222211
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
....+...+|+|+++++++..+.
T Consensus 214 ----~~~r~~~pedvA~~~~~l~s~~~ 236 (285)
T 3sc4_A 214 ----AMARSRKPEVYADAAYVVLNKPS 236 (285)
T ss_dssp ----CCTTCBCTHHHHHHHHHHHTSCT
T ss_pred ----cccCCCCHHHHHHHHHHHhCCcc
Confidence 12246678999999999998764
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=163.67 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=134.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccc------------cCCCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
++++||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.+.. +.++|+
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 100 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQ-ALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG 100 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 78999999999999999999999999999998642211 1111111 136788899987641 235799
Q ss_pred EEEecccCCC-Ccc----cCChhHHHHHhHHHHHHHHHHHH----HcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLAK----RVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 184 Vih~A~~~~~-~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
||||||.... ... .++++..+++|+.++.++++++. +.+ . +||++||...+. +
T Consensus 101 lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~----------------~ 164 (272)
T 2nwq_A 101 LINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW----------------P 164 (272)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS----------------C
T ss_pred EEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc----------------C
Confidence 9999997532 111 23467789999999888777653 433 5 999999987652 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|+||.+.++.... . ...- ..... .... ...++.
T Consensus 165 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~---~-~~~~-~~~~~----~~~~----~~~~~~ 231 (272)
T 2nwq_A 165 YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV---R-FGGD-QARYD----KTYA----GAHPIQ 231 (272)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------------CCCCBC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc---c-cccc-hHHHH----Hhhc----cCCCCC
Confidence 223367999999999999998865 38999999999998764210 0 0000 00000 0000 012478
Q ss_pred HHHHHHHHHHHHcCCC
Q 013467 330 VSDLVEGLMRLMEGEH 345 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~ 345 (442)
.+|+|+++++++..+.
T Consensus 232 pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 232 PEDIAETIFWIMNQPA 247 (272)
T ss_dssp HHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999998654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-19 Score=164.73 Aligned_cols=218 Identities=12% Similarity=0.031 Sum_probs=145.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC--cccccccc--CCCceeEEeccccccc-----------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR--KENVMHHF--GNPNFELIRHDVVEPL----------- 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~--~~~~~~~~--~~~~v~~~~~D~~~~~----------- 177 (442)
..++++++||||+|+||++++++|+++|++|++++|..... .+.+...+ ...++.++.+|+.+..
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 35667999999999999999999999999999998853221 11111111 1346888999987752
Q ss_pred -cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc--C-CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~--g-~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+.++|+||||||........ +++...+++|+.++.++++++... + .++|++||...+..
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~------------- 154 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY------------- 154 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH-------------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC-------------
Confidence 23699999999976543322 236678899999999999999764 2 38999999876531
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+...... .......+........
T Consensus 155 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~------------~~~~~~~~~~~~~~~r 219 (262)
T 3ksu_A 155 ---TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE------------TKESTAFHKSQAMGNQ 219 (262)
T ss_dssp ---HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------------------CCCC
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC------------chHHHHHHHhcCcccC
Confidence 1223679999999999999998875 899999999998764210000 0000011111122335
Q ss_pred ccCHHHHHHHHHHHHcCCC--Cc-cEEecCCCccC
Q 013467 327 FQFVSDLVEGLMRLMEGEH--VG-PFNLGNPGEFT 358 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~~~~s 358 (442)
+...+|+|+++++++.... .| .+++.+|....
T Consensus 220 ~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 220 LTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTR 254 (262)
T ss_dssp SCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCCC
T ss_pred CCCHHHHHHHHHHHcCCCCCccCCEEEECCCccCC
Confidence 7788999999999987622 35 77777665443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=160.10 Aligned_cols=215 Identities=13% Similarity=0.052 Sum_probs=149.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-----c--------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-----L-------- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------- 178 (442)
.++++|+||||+|+||++++++|+++|++|+++++......+.....+ ....+.++.+|+.+.. +
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 84 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999999997654332222222111 2346778888886641 1
Q ss_pred -----CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc--C-CeEEEeecCccccCCCCCCCCCCC
Q 013467 179 -----LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 -----~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~--g-~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
..+|+||||||........ +.++..+++|+.++.++++++... + .++|++||...+.
T Consensus 85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~----------- 153 (255)
T 3icc_A 85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----------- 153 (255)
T ss_dssp HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS-----------
T ss_pred ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc-----------
Confidence 1389999999975433222 235668899999999999998764 2 3899999987652
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+++||.+..+........ ..+........+
T Consensus 154 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~--------- 217 (255)
T 3icc_A 154 -----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSD--PMMKQYATTISA--------- 217 (255)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTS--HHHHHHHHHTST---------
T ss_pred -----CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhccc--HHHHHhhhccCC---------
Confidence 22234689999999999999987764 89999999999988753211111 111112222211
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
...+..++|+|+++++++.... .| .+++.+|.
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 2346779999999999986542 35 78887764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=167.90 Aligned_cols=202 Identities=15% Similarity=-0.020 Sum_probs=142.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh-CCCeEEEEeCCCCCCcccccccc-CCCceeEEeccccccc-----c-------CC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEPL-----L-------LE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~-~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~-----~-------~~ 180 (442)
++++|+||||+|+||++++++|++ +|++|++++|+.....+...... ...++.++.+|+.+.. + .+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 457999999999999999999999 99999999986332111111100 1246788899987641 1 27
Q ss_pred CCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccC-CC----------CCCC
Q 013467 181 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGD-PL----------QHPQ 242 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~-~~----------~~~~ 242 (442)
+|+||||||....... .+++...+++|+.++.++++++.... .+||++||...+.. .. ..++
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI 162 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccccc
Confidence 9999999997543222 13456789999999999999998753 38999999876521 00 1122
Q ss_pred CCCCCC--------------CCCCCCCCChhHHHHHHHHHHHHHHHhh-------cCCcEEEEeeCceeCCCCccCCCch
Q 013467 243 KETYWG--------------NVNPIGVRSCYDEGKRTAETLTMDYHRG-------AGVEVRIARIFNTYGPRMCIDDGRV 301 (442)
Q Consensus 243 ~E~~~~--------------~~~~~~~~~~Y~~sK~~~E~~v~~~~~~-------~g~~~~iiRp~~v~G~~~~~~~~~~ 301 (442)
+|+++. ...+..+...|+.+|.+.|.+++.++++ .|+++.+|+||+|.++... .
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~---~-- 237 (276)
T 1wma_A 163 TEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG---P-- 237 (276)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC---T--
T ss_pred chhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC---c--
Confidence 222100 0011123478999999999999988765 4899999999999876421 0
Q ss_pred HHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 302 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
..+.+.+|+|++++.++..+
T Consensus 238 -----------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 -----------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp -----------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred -----------------------cccCChhHhhhhHhhhhcCc
Confidence 13678999999999999755
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-18 Score=155.65 Aligned_cols=203 Identities=16% Similarity=0.180 Sum_probs=146.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~d~ 183 (442)
.|+|+||||+++||+.+++.|+++|++|++.+|+.....+ ... ...++.++.+|+.++ .+.++|+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~-~~~--~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi 78 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD-FAK--ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHT--TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHH--hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3689999999999999999999999999999986322211 111 235678899999775 2346999
Q ss_pred EEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
+|||||........ ++++..+++|+.++..+.+++. +.+-++|++||...+. +...
T Consensus 79 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~----------------~~~~ 142 (247)
T 3ged_A 79 LVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ----------------SEPD 142 (247)
T ss_dssp EEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS----------------CCTT
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc----------------CCCC
Confidence 99999976543322 3477899999999988887663 3445999999987542 2222
Q ss_pred CChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
...|+.+|.....+++.++.+. |+++.+|.||++-.+.. ..+........++ ..+...+|+
T Consensus 143 ~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~--------~~~~~~~~~~~Pl---------~R~g~pedi 205 (247)
T 3ged_A 143 SEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQ--------QEFTQEDCAAIPA---------GKVGTPKDI 205 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-----------CCHHHHHTSTT---------SSCBCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCc--------HHHHHHHHhcCCC---------CCCcCHHHH
Confidence 3689999999999999988765 89999999999876542 1122222222222 135568999
Q ss_pred HHHHHHHHcCCC-Cc-cEEecCC
Q 013467 334 VEGLMRLMEGEH-VG-PFNLGNP 354 (442)
Q Consensus 334 a~ai~~~l~~~~-~g-~~~i~~~ 354 (442)
|.++++++.... +| .+.+.+|
T Consensus 206 A~~v~fL~s~~~iTG~~i~VDGG 228 (247)
T 3ged_A 206 SNMVLFLCQQDFITGETIIVDGG 228 (247)
T ss_dssp HHHHHHHHHCSSCCSCEEEESTT
T ss_pred HHHHHHHHhCCCCCCCeEEECcC
Confidence 999999997543 35 6777665
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=162.56 Aligned_cols=198 Identities=12% Similarity=0.092 Sum_probs=141.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc---cCCCceeEEeccccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH---FGNPNFELIRHDVVEPL------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~------------~ 178 (442)
.++++|+||||+|+||++++++|+++|++|++++|+.....+ .... ....++.++.+|+.+.. +
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQK-VVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 104 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999986432111 1111 12236788899987741 1
Q ss_pred CCCCEEEEe-cccCCCCccc---CChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHL-ACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~-A~~~~~~~~~---~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|+|||| ||........ +.+...+++|+.|+.++++++.. .+.+||++||...+.
T Consensus 105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------------- 169 (286)
T 1xu9_A 105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV--------------- 169 (286)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS---------------
T ss_pred CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc---------------
Confidence 369999999 5654322122 23567899999999999887743 345999999987652
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.+.+.+++.++.+. ++++++++||.+..+.. . ....+ ....
T Consensus 170 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~--------~----~~~~~---------~~~~ 227 (286)
T 1xu9_A 170 -AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA--------M----KAVSG---------IVHM 227 (286)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH--------H----HHSCG---------GGGG
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhH--------H----Hhccc---------cccC
Confidence 22234689999999999998887654 89999999999876421 1 11111 1123
Q ss_pred eccCHHHHHHHHHHHHcCCCCccE
Q 013467 326 SFQFVSDLVEGLMRLMEGEHVGPF 349 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~~g~~ 349 (442)
.+++.+|+|+.++.+++.+..+.|
T Consensus 228 ~~~~~~~vA~~i~~~~~~~~~~~~ 251 (286)
T 1xu9_A 228 QAAPKEECALEIIKGGALRQEEVY 251 (286)
T ss_dssp GCBCHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCceEE
Confidence 568899999999999988766654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=155.39 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=148.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~ 179 (442)
+++|+++||||+++||+.+++.|+++|.+|++.+|+.+... .....+ ...++.++.+|+.++ .+.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~-~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLN-QIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998643222 122211 235688899999775 234
Q ss_pred CCCEEEEecccCCC-Ccc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~-~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|++|||||.... ... .++++..+++|+.|+..+.+++ ++.+. ++|++||...+
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~--------------- 148 (254)
T 4fn4_A 84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGI--------------- 148 (254)
T ss_dssp CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT---------------
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhc---------------
Confidence 69999999996533 212 2347889999999988877765 44555 99999998754
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.+......|+.+|.....+.+.++.+. |+++..|.||.|-.+......... ...........++ ...
T Consensus 149 -~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~-~~~~~~~~~~~~~--------~~R 218 (254)
T 4fn4_A 149 -RGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPS-ELGMRTLTKLMSL--------SSR 218 (254)
T ss_dssp -CSSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCC-HHHHHHHHHHHTT--------CCC
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCc-HHHHHHHHhcCCC--------CCC
Confidence 122233679999999999999988764 899999999999876421111110 1111111111000 113
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+|.++++++.... .| .+.+.+|
T Consensus 219 ~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 219 LAEPEDIANVIVFLASDEASFVNGDAVVVDGG 250 (254)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence 4567999999999986543 45 6776665
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-18 Score=162.10 Aligned_cols=212 Identities=12% Similarity=0.024 Sum_probs=147.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEe-CCCCCCcccccccc---CCCceeEEeccccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD-NFFTGRKENVMHHF---GNPNFELIRHDVVEPL------------ 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~-r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------ 177 (442)
+++++++||||+|+||++++++|+++|++|++++ |+.... +.....+ ...++.++.+|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA-NALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 85 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence 3467999999999999999999999999999999 753221 1111111 1346788888887654
Q ss_pred -----c------------CCCCEEEEecccCCCCcc------------------cCChhHHHHHhHHHHHHHHHHHH---
Q 013467 178 -----L------------LEVDQIYHLACPASPVHY------------------KFNPVKTIKTNVVGTLNMLGLAK--- 219 (442)
Q Consensus 178 -----~------------~~~d~Vih~A~~~~~~~~------------------~~~~~~~~~~nv~gt~~ll~~a~--- 219 (442)
. .++|+||||||....... .+.+...+++|+.++.++++++.
T Consensus 86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m 165 (291)
T 1e7w_A 86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 165 (291)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 269999999997543221 22356788999999999988775
Q ss_pred -HcC------C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCc
Q 013467 220 -RVG------A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFN 288 (442)
Q Consensus 220 -~~g------~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~ 288 (442)
+.+ . +||++||...+. +......|+.+|.+.+.+++.++.+ .|+++.+|+||+
T Consensus 166 ~~~~~~~~~~~g~Iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 229 (291)
T 1e7w_A 166 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 229 (291)
T ss_dssp HTSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HhcCCCCCCCCcEEEEEechhhcC----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCC
Confidence 334 4 899999987652 2223468999999999999988776 389999999999
Q ss_pred eeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCCc
Q 013467 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPGE 356 (442)
Q Consensus 289 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~~ 356 (442)
+..+. . . . ..+...+....++. ..+...+|+|+++++++..+ ..| .+++.+|..
T Consensus 230 v~T~~-~-~-~---~~~~~~~~~~~p~~--------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 230 SVLVD-D-M-P---PAVWEGHRSKVPLY--------QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287 (291)
T ss_dssp BCCGG-G-S-C---HHHHHHHHTTCTTT--------TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCCc-c-C-C---HHHHHHHHhhCCCC--------CCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCcc
Confidence 87654 1 1 1 22222222221110 03567899999999999753 245 677766643
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=160.50 Aligned_cols=215 Identities=16% Similarity=0.078 Sum_probs=147.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 181 (442)
.++|+++||||+|+||++++++|+++|++|++++|+..... .+... ...++.++.+|+.+.. +.++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLR-ELEVA-HGGNAVGVVGDVRSLQDQKRAAERCLAAFGKI 80 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH-TBTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHH-HHHHH-cCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 45679999999999999999999999999999998533211 11111 1346788999987742 2368
Q ss_pred CEEEEecccCCCCcc---------cCChhHHHHHhHHHHHHHHHHHHH----cCCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHY---------KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 182 d~Vih~A~~~~~~~~---------~~~~~~~~~~nv~gt~~ll~~a~~----~g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
|+||||||....... .+.++..+++|+.++.++++++.. .+.++|++||...+.
T Consensus 81 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 147 (281)
T 3zv4_A 81 DTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------------- 147 (281)
T ss_dssp CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS-------------
T ss_pred CEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc-------------
Confidence 999999997532211 112567889999999999888743 345999999987652
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHH------HHHHHHHcCCCcEEecC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVS------NFVAQALRKEPLTVYGD 320 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+. ++++.+|+||.+..+........... .+...+....+
T Consensus 148 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 218 (281)
T 3zv4_A 148 ---PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLP------ 218 (281)
T ss_dssp ---SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCT------
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCC------
Confidence 22334679999999999999998765 39999999999987643111000000 01111222211
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC----Cc-cEEecCCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH----VG-PFNLGNPG 355 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~----~g-~~~i~~~~ 355 (442)
...+...+|+|.++++++..+. .| .+++.+|-
T Consensus 219 ---~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~ 255 (281)
T 3zv4_A 219 ---IGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGM 255 (281)
T ss_dssp ---TSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSG
T ss_pred ---CCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCC
Confidence 2246678999999999998332 35 78887764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=155.50 Aligned_cols=218 Identities=17% Similarity=0.148 Sum_probs=150.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc-ccCCCceeEEecccccc------------cc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH-HFGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~-~~~~~~v~~~~~D~~~~------------~~ 178 (442)
+.+++|+++||||+++||+.+++.|+++|.+|++.+|+.+... .... .....++.++.+|+.++ .+
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999754321 1111 11235678889998775 23
Q ss_pred CCCCEEEEecccCCCCcc---cCChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY---KFNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~---~~~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
.++|++|||||....... .++++..+++|+.++..+.+++ ++.+-++|++||...+.
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------- 145 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT---------------- 145 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------
Confidence 469999999997543322 2347778999999988887766 33445999999987542
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|...+.+++.++.+. |+++..|.||.|..+..... ...........+....++ + ..
T Consensus 146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---g-----~R 217 (258)
T 4gkb_A 146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL---G-----RR 217 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---T-----TS
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---C-----CC
Confidence 22223679999999999999988754 89999999999987643110 000001122222222221 0 13
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+|.++++++.... +| .+.+.+|
T Consensus 218 ~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG 249 (258)
T 4gkb_A 218 FTTPDEIADTAVFLLSPRASHTTGEWLFVDGG 249 (258)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCccCCeEEECCC
Confidence 5568999999999986543 46 6777665
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=162.48 Aligned_cols=214 Identities=15% Similarity=0.101 Sum_probs=143.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE-KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35679999999999999999999999999999998642211 111111 1246788899987652 23
Q ss_pred CCCEEEEecccC-CCCc----ccCChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPA-SPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~-~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|+||||||.. .... ..+++...+++|+.++.++++++.. .+. +||++||...+..
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 150 (262)
T 1zem_A 84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG------------- 150 (262)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC-------------
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC-------------
Confidence 699999999965 2211 1223677899999999999887753 354 9999999876521
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccC-----------CCchHHH-HHHHHHcCCC
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCID-----------DGRVVSN-FVAQALRKEP 314 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~-----------~~~~~~~-~~~~~~~~~~ 314 (442)
......|+.+|...+.+++.++.+ .|+++.+|+||++..+..... ....-.. +...+....+
T Consensus 151 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (262)
T 1zem_A 151 ---PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 227 (262)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCC
Confidence 112367999999999999888765 489999999999876531000 0000001 1111111111
Q ss_pred cEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecC
Q 013467 315 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGN 353 (442)
Q Consensus 315 ~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~ 353 (442)
...+...+|+|+++++++.... .| .+.+.+
T Consensus 228 ---------~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 261 (262)
T 1zem_A 228 ---------MRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 261 (262)
T ss_dssp ---------TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred ---------CCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCC
Confidence 1235678999999999987542 35 555544
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=158.22 Aligned_cols=210 Identities=13% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEE-e--CCCCCCccccccccCCCceeEEecccccc-------ccCCCCEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVV-D--NFFTGRKENVMHHFGNPNFELIRHDVVEP-------LLLEVDQIY 185 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l-~--r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-------~~~~~d~Vi 185 (442)
+|+++||||+|+||++++++|+++|++|+++ + |+.... +.....+ ...++.+.+..+. .+.++|+||
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~-~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~iD~lv 77 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAER-QRFESEN--PGTIALAEQKPERLVDATLQHGEAIDTIV 77 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH-HHHHHHS--TTEEECCCCCGGGHHHHHGGGSSCEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHH-HHHHHHh--CCCcccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3689999999999999999999999999999 5 753221 1111111 2334433332222 233689999
Q ss_pred EecccCCC---Ccc----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASP---VHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 186 h~A~~~~~---~~~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
||||.... ... .++++..+++|+.++.++++++. +.+. +||++||...+. +.
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~ 141 (244)
T 1zmo_A 78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK----------------PL 141 (244)
T ss_dssp ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------------CC
T ss_pred ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC----------------CC
Confidence 99997543 221 12366789999999999888774 4554 999999987653 22
Q ss_pred CCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchH-HHHHHHHHc-CCCcEEecCCceeEecc
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVV-SNFVAQALR-KEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~v 328 (442)
.....|+.+|.+.+.+++.++.+ .|+++.+|+||.+..+.... ...+. ......... ..+ ...+.
T Consensus 142 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~~~~p---------~~r~~ 211 (244)
T 1zmo_A 142 AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP-TSDWENNPELRERVDRDVP---------LGRLG 211 (244)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC-HHHHHHCHHHHHHHHHHCT---------TCSCB
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc-cccccchHHHHHHHhcCCC---------CCCCc
Confidence 23367999999999999988765 38999999999988764200 00000 011111111 111 12466
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|+|+++++++.... .| .+.+.+|
T Consensus 212 ~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 212 RPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp CHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 78999999999998653 35 5666554
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=152.97 Aligned_cols=214 Identities=14% Similarity=0.076 Sum_probs=149.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc-------CCCCEEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL-------LEVDQIY 185 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vi 185 (442)
.+++|+++||||++.||+.+++.|+++|.+|++.+|+.......... ....++..+.+|+.++.. .++|++|
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV 84 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIA-KDGGNASALLIDFADPLAAKDSFTDAGFDILV 84 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH-HhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence 45678999999999999999999999999999999864311111111 123567888999887632 2589999
Q ss_pred EecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 186 h~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
||||........ +++++.+++|+.|+..+.+++ .+.+ . ++|++||...+. +...
T Consensus 85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~----------------g~~~ 148 (247)
T 4hp8_A 85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ----------------GGIR 148 (247)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCSS
T ss_pred ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC----------------CCCC
Confidence 999976543322 347889999999998888764 3344 3 899999977541 2222
Q ss_pred CChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
...|+.+|.....+++.++.+. |+++..|.||+|..+........ ......+....|+. .+-..+|
T Consensus 149 ~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~--~~~~~~~~~~~Plg---------R~g~pee 217 (247)
T 4hp8_A 149 VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRAD--AARNKAILERIPAG---------RWGHSED 217 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTS--HHHHHHHHTTCTTS---------SCBCTHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccC--HHHHHHHHhCCCCC---------CCcCHHH
Confidence 3679999999999999988764 89999999999987642100000 11222333333332 3445699
Q ss_pred HHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 333 LVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 333 va~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+|.++++++.... .| .+.+.+|
T Consensus 218 iA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 218 IAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHhCchhcCCcCCeEEECcc
Confidence 9999999986543 46 6666655
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=158.95 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=146.5
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc------ccccc--CCCceeEEeccccccc-----
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHF--GNPNFELIRHDVVEPL----- 177 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~--~~~~v~~~~~D~~~~~----- 177 (442)
....++++|+||||+|+||.+++++|+++|++|++++|+.....+. ....+ ...++.++.+|+.+..
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3456788999999999999999999999999999999975532211 11111 2346788899987752
Q ss_pred -------cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCC
Q 013467 178 -------LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHP 241 (442)
Q Consensus 178 -------~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~ 241 (442)
+.++|+||||||........ +.++..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~----- 194 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP----- 194 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC-----
Confidence 23799999999975543222 2357789999999999999884 3444 9999999875421
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 242 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 242 ~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.+... .+... +.+.
T Consensus 195 ---------~~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T-----------~~~~~-~~~~------ 247 (346)
T 3kvo_A 195 ---------VWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT-----------AAMDM-LGGP------ 247 (346)
T ss_dssp ---------GGTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC-----------HHHHH-HCC-------
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc-----------HHHHh-hccc------
Confidence 012234689999999999999988775 799999999964432 11111 1111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC--CccEEec
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH--VGPFNLG 352 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~--~g~~~i~ 352 (442)
.....+...+|+|+++++++.... .|.+.+.
T Consensus 248 --~~~~r~~~pedvA~~v~~L~s~~~~itG~~ivd 280 (346)
T 3kvo_A 248 --GIESQCRKVDIIADAAYSIFQKPKSFTGNFVID 280 (346)
T ss_dssp ---CGGGCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred --cccccCCCHHHHHHHHHHHHhcCCCCCceEEEC
Confidence 112346678999999999998732 3544443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=157.64 Aligned_cols=214 Identities=16% Similarity=0.052 Sum_probs=149.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------ccC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~~ 179 (442)
..++|+++||||+++||+.+++.|+++|.+|++.+|+.+...+...... ...++..+.+|+.++ .+.
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 3567799999999999999999999999999999985432222111111 234678888998775 234
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HH-cCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KR-VGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~-~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|++|||||........ ++++..+++|+.|+..+.+++ .+ .+. ++|++||...+.
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-------------- 151 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-------------- 151 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--------------
Confidence 699999999976554332 347889999999998888765 22 344 999999987542
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
+......|+.+|.....+++.++.+. |+++..|.||.|..+..... .. ..+...+....++.
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~---~~~~~~~~~~~Pl~--------- 217 (255)
T 4g81_D 152 --ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIED---KQFDSWVKSSTPSQ--------- 217 (255)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTC---HHHHHHHHHHSTTC---------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCC---HHHHHHHHhCCCCC---------
Confidence 22234679999999999999988764 89999999999987642100 00 11222222222222
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+|.++++++.... .| .+.+.+|
T Consensus 218 R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 218 RWGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 24456899999999986543 45 6666655
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=154.33 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=139.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc---c---cccc--CCCceeEEeccccccc-------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN---V---MHHF--GNPNFELIRHDVVEPL------- 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~---~---~~~~--~~~~v~~~~~D~~~~~------- 177 (442)
..++|+++||||+|+||++++++|+++|++|++++|+.....+. + ...+ ...++.++.+|+.+..
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 45677999999999999999999999999999999975432111 1 0000 1346788999987752
Q ss_pred -----cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cC-CeEEEeecCccccCCCCCCCC
Q 013467 178 -----LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 178 -----~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g-~r~i~iSS~~vy~~~~~~~~~ 243 (442)
+.++|+||||||........ +.++..+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 156 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------ 156 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH------
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------
Confidence 23699999999976443222 23667889999999999988743 34 399999997654210
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
.......|+.+|.+.+.+++.++.+. |+++.+|+||.+....+ . ....+.
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~-------~-----~~~~~~------- 209 (274)
T 3e03_A 157 --------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDA-------I-----NMLPGV------- 209 (274)
T ss_dssp --------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------CC-------
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccch-------h-----hhcccc-------
Confidence 01223679999999999999987764 89999999995433211 0 111111
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
....+...+|+|+++++++..+.
T Consensus 210 --~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 210 --DAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp --CGGGSBCTHHHHHHHHHHHTSCC
T ss_pred --cccccCCHHHHHHHHHHHhCccc
Confidence 11236678999999999997654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=154.91 Aligned_cols=215 Identities=14% Similarity=0.121 Sum_probs=149.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
++++|+++||||+++||+.+++.|+++|.+|++.+|+.+...+. ...+ ..++..+.+|+.++ .+.+
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~-~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAA-IAEI-GGGAVGIQADSANLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHH-CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHc-CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 36788999999999999999999999999999999864322222 2222 24567888998775 2346
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
+|++|||||........ +++++.+++|+.|+..+.+++... +.++|++||...+ .+.
T Consensus 104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~----------------~~~ 167 (273)
T 4fgs_A 104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS----------------TGT 167 (273)
T ss_dssp EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG----------------SCC
T ss_pred CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc----------------cCC
Confidence 99999999975543322 347889999999999999987542 2379999997654 122
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC---CCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID---DGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.....|+.+|.....+++.++.+. |+++..|.||.|..+..... ....-..+...+....|+. .+
T Consensus 168 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Plg---------R~ 238 (273)
T 4fgs_A 168 PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMG---------RV 238 (273)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTS---------SC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCC---------CC
Confidence 233689999999999999998765 89999999999987643111 0001122333333332222 34
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+|.++++++.+.. .| .+.+.+|
T Consensus 239 g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 239 GRAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 557999999999996543 46 6666655
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=156.18 Aligned_cols=195 Identities=21% Similarity=0.149 Sum_probs=136.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc--ccCCCceeEEeccc--ccc------------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH--HFGNPNFELIRHDV--VEP------------ 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~--~~~------------ 176 (442)
..++++|+||||+|+||++++++|+++|++|++++|+.....+.... ......+.++..|+ .+.
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 35677999999999999999999999999999999864322211111 11224556666665 432
Q ss_pred ccCCCCEEEEecccCCCCc-----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
.+.++|+||||||...... ..+++...+++|+.++.++++++ ++.+. ++|++||...+.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 159 (247)
T 3i1j_A 91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK----------- 159 (247)
T ss_dssp HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-----------
Confidence 1237999999999753221 12346778999999999999987 34454 899999977552
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
+......|+.+|.+.+.+++.++.+ .++++.+|+||.+..+. ........
T Consensus 160 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~------------~~~~~~~~--------- 213 (247)
T 3i1j_A 160 -----GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM------------RAQAYPDE--------- 213 (247)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH------------HHHHSTTS---------
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc------------chhccccc---------
Confidence 2233468999999999999998776 47899999999876531 11111111
Q ss_pred eeEeccCHHHHHHHHHHHHcCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
....+...+|+|+++++++...
T Consensus 214 ~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 214 NPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp CGGGSCCGGGGTHHHHHHHSGG
T ss_pred CccCCCCHHHHHHHHHHHhCch
Confidence 1124567899999999998754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=150.93 Aligned_cols=215 Identities=12% Similarity=0.027 Sum_probs=149.9
Q ss_pred CCCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCccc--cccccCCCceeEEecccccc------------
Q 013467 113 KRKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKEN--VMHHFGNPNFELIRHDVVEP------------ 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~D~~~~------------ 176 (442)
.+++|+++||||+| +||..+++.|+++|++|++.+|+.....+. ........++.++.+|+.++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45678999999887 899999999999999999999964332221 11222345788899998775
Q ss_pred ccCCCCEEEEecccCCCCcc----c----CChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVHY----K----FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~~----~----~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.+.++|++|||||....... . +++...+++|+.++..+.+.+...- -++|++||....
T Consensus 83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~----------- 151 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE----------- 151 (256)
T ss_dssp HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT-----------
T ss_pred HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc-----------
Confidence 23469999999996543211 1 2244567889999888888776432 389999997653
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCc
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 322 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (442)
.+......|+.+|...+.+++.++.+. |+++.+|.||.+..+.... ....+.+...+....++.
T Consensus 152 -----~~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~--~~~~~~~~~~~~~~~Pl~------ 218 (256)
T 4fs3_A 152 -----FAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKG--VGGFNTILKEIKERAPLK------ 218 (256)
T ss_dssp -----SCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTT--CTTHHHHHHHHHHHSTTS------
T ss_pred -----cCcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhh--ccCCHHHHHHHHhcCCCC------
Confidence 222334689999999999999988764 8999999999987764311 111234444444433322
Q ss_pred eeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 323 QTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 323 ~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+|.++++++.... +| .+.+.+|
T Consensus 219 ---R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 219 ---RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp ---SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 34567999999999986543 46 6666655
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-17 Score=156.18 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=134.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC----CCc----cccccccCCCceeEEecccccc--------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT----GRK----ENVMHHFGNPNFELIRHDVVEP-------- 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~----~~~----~~~~~~~~~~~v~~~~~D~~~~-------- 176 (442)
..++|+|+||||+|+||++++++|+++|++|++.++... .+. +.....+..... ...+|+.+.
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVK 84 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHH
Confidence 456789999999999999999999999999999876321 111 111111110010 112344332
Q ss_pred ----ccCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCc-cccCCCCCCC
Q 013467 177 ----LLLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSE-VYGDPLQHPQ 242 (442)
Q Consensus 177 ----~~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~-vy~~~~~~~~ 242 (442)
.+.++|+||||||....... .+.++..+++|+.|+.++++++ ++.+. +||++||.. .++..
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~----- 159 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF----- 159 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC-----
Confidence 13469999999997554321 2346778999999998888876 44555 999999965 44321
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
....|+.+|++.+.+++.++++ .|+++.+|+||.+ .+.. ......
T Consensus 160 ------------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~----~~~~~~--------------- 207 (319)
T 1gz6_A 160 ------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMT----ETVMPE--------------- 207 (319)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTT----GGGSCH---------------
T ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccc----cccCCh---------------
Confidence 2367999999999999998776 4899999999987 3211 000000
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC--Cc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH--VG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~ 354 (442)
....++..+|+|.++++++..+. .| .|++.++
T Consensus 208 ---~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 208 ---DLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 242 (319)
T ss_dssp ---HHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred ---hhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence 11124577999999999987642 35 6777665
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=152.07 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=140.3
Q ss_pred CCCCEEEEEcCC--chhHHHHHHHHHhCCCeEEEEeCCC----------CCCccccccccCCCc----eeEEecc-----
Q 013467 114 RKGLRIVVTGGA--GFVGSHLVDRLIARGDSVIVVDNFF----------TGRKENVMHHFGNPN----FELIRHD----- 172 (442)
Q Consensus 114 ~~~~~vlVtGat--G~lG~~lv~~Ll~~g~~V~~l~r~~----------~~~~~~~~~~~~~~~----v~~~~~D----- 172 (442)
+++|+++||||+ |+||++++++|+++|++|++++|+. ....+... .+.... ......|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSR-VLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGG-BCTTSSBCCEEEEEEECTTCCS
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhh-hhccccccccccccccceeccc
Confidence 456799999999 9999999999999999999998531 11111111 111000 1222211
Q ss_pred ---c----cc-------------c-------ccCCCCEEEEecccCC--CCc----ccCChhHHHHHhHHHHHHHHHHHH
Q 013467 173 ---V----VE-------------P-------LLLEVDQIYHLACPAS--PVH----YKFNPVKTIKTNVVGTLNMLGLAK 219 (442)
Q Consensus 173 ---~----~~-------------~-------~~~~~d~Vih~A~~~~--~~~----~~~~~~~~~~~nv~gt~~ll~~a~ 219 (442)
+ .+ . .+.++|+||||||... ... ..++++..+++|+.++.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 11 1 1236899999998532 111 123467789999999999999987
Q ss_pred Hc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeC
Q 013467 220 RV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (442)
Q Consensus 220 ~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G 291 (442)
.. +.++|++||...+.. .... ..|+.+|.+.+.+++.++.+ .|+++.+|+||++.+
T Consensus 165 ~~m~~~g~iv~isS~~~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T 228 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERI----------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSC----------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHhccCceEEEEeccccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccccc
Confidence 54 248999999775421 1112 47999999999999988765 589999999999998
Q ss_pred CCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
+.... ......+........++ ..+...+|+|+++++++... ..| .+++.+|.
T Consensus 229 ~~~~~--~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 229 RAAKA--IGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp CCSSC--CSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred chhhh--ccccHHHHHHhhccCCC---------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 86421 11223333333222221 23567899999999998653 245 77777663
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=157.36 Aligned_cols=207 Identities=16% Similarity=0.040 Sum_probs=141.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEecccccc-c------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEP-L------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~-~------------~ 178 (442)
.++++|+||||+|+||.+++++|+++|++|++++|+.....+..... ....++.++.+|+.+. . +
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 45679999999999999999999999999999999643322221111 1224688999999875 2 2
Q ss_pred CCCCEEEEecccCCCC----------------------------------cccCChhHHHHHhHHHHHHHHHHHH----H
Q 013467 179 LEVDQIYHLACPASPV----------------------------------HYKFNPVKTIKTNVVGTLNMLGLAK----R 220 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~----------------------------------~~~~~~~~~~~~nv~gt~~ll~~a~----~ 220 (442)
.++|+||||||..... ...+.++..+++|+.|+.++++++. +
T Consensus 90 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~ 169 (311)
T 3o26_A 90 GKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQL 169 (311)
T ss_dssp SSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhcc
Confidence 3699999999975321 0112345678999999988888774 3
Q ss_pred cC-CeEEEeecCccccCCCC--------------------------------CCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 221 VG-ARFLLTSTSEVYGDPLQ--------------------------------HPQKETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 221 ~g-~r~i~iSS~~vy~~~~~--------------------------------~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
.+ .+||++||...+..... ....+. ........|+.+|++.+
T Consensus 170 ~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 170 SDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETN-----GWPSFGAAYTTSKACLN 244 (311)
T ss_dssp SSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTT-----TCCSSCHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccc-----cCcccchhhHHHHHHHH
Confidence 34 39999999765421100 000011 01123367999999999
Q ss_pred HHHHHHHhhc-CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-
Q 013467 268 TLTMDYHRGA-GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH- 345 (442)
Q Consensus 268 ~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~- 345 (442)
.+++.++++. ++++.+|+||+|..+... + ......++.++.++.++..+.
T Consensus 245 ~~~~~la~e~~~i~v~~v~PG~v~T~~~~----------------~------------~~~~~~~~~a~~~~~~~~~~~~ 296 (311)
T 3o26_A 245 AYTRVLANKIPKFQVNCVCPGLVKTEMNY----------------G------------IGNYTAEEGAEHVVRIALFPDD 296 (311)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSBCSGGGT----------------T------------CCSBCHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhhcCCceEEEecCCceecCCcC----------------C------------CCCCCHHHHHHHHHHHHhCCCC
Confidence 9999998875 799999999998875310 0 012467899999999887553
Q ss_pred --CccEEecC
Q 013467 346 --VGPFNLGN 353 (442)
Q Consensus 346 --~g~~~i~~ 353 (442)
.|.|..++
T Consensus 297 ~~~g~~~~~s 306 (311)
T 3o26_A 297 GPSGFFYDCS 306 (311)
T ss_dssp CCCSCEETC-
T ss_pred CCCceEeccc
Confidence 24555554
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=148.75 Aligned_cols=208 Identities=14% Similarity=0.128 Sum_probs=142.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
.+++|+++||||+++||+.+++.|+++|++|++.+|..... . ....++.+|+.++ .+.+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---~------~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 78 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG---L------PEELFVEADLTTKEGCAIVAEATRQRLGG 78 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT---S------CTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC---C------CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46788999999999999999999999999999999853321 1 1223577787664 2346
Q ss_pred CCEEEEecccCCCC--c----ccCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV--H----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 181 ~d~Vih~A~~~~~~--~----~~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+|++|||||..... . ..++++..+++|+.++..+.+++ ++.+. ++|++||...+-
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~-------------- 144 (261)
T 4h15_A 79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVL-------------- 144 (261)
T ss_dssp CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhcc--------------
Confidence 99999999964321 1 12347788999999988887765 44555 999999976531
Q ss_pred CCCC-CCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc----------CCCchHHHHHHHHHcCCCc
Q 013467 250 VNPI-GVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI----------DDGRVVSNFVAQALRKEPL 315 (442)
Q Consensus 250 ~~~~-~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~----------~~~~~~~~~~~~~~~~~~~ 315 (442)
+. .....|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+.... ........+........|
T Consensus 145 --~~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P- 221 (261)
T 4h15_A 145 --PLPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIP- 221 (261)
T ss_dssp --CCTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCT-
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCC-
Confidence 11 123679999999999999988764 8999999999987642100 000000111111112211
Q ss_pred EEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 316 ~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+...+|+|.++++++.... +| .+.+.+|
T Consensus 222 --------lgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 222 --------LGRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp --------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------CCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 1246678999999999986543 45 6777655
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=152.41 Aligned_cols=206 Identities=13% Similarity=0.031 Sum_probs=134.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc-------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-------------L 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-------------~ 178 (442)
+++++++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLR-VVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999998532211 111111 1246788889987641 3
Q ss_pred CCCCEEEEecc--cC-------CC--CcccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCC
Q 013467 179 LEVDQIYHLAC--PA-------SP--VHYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 179 ~~~d~Vih~A~--~~-------~~--~~~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~ 242 (442)
.++|+|||||| .. .+ ....+.+...+++|+.++.++.+++. +.+. ++|++||...+..
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------ 155 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------ 155 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence 46899999994 21 11 11123366788999999887776653 4454 9999999876521
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
.+...|+.+|.+.+.+++.++.+ .|+++.+|+||++..+.... ....- ............
T Consensus 156 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~--~~~~~~~~~~~~ 218 (260)
T 2qq5_A 156 -----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKE----HMAKE--EVLQDPVLKQFK 218 (260)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHH----hhccc--cccchhHHHHHH
Confidence 11367999999999999998765 48999999999998874210 00000 000000000000
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
.....+...+|+|+++++++..+.
T Consensus 219 --~~~~~~~~pe~va~~v~~l~s~~~ 242 (260)
T 2qq5_A 219 --SAFSSAETTELSGKCVVALATDPN 242 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCTT
T ss_pred --hhhccCCCHHHHHHHHHHHhcCcc
Confidence 001124578999999999997653
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-17 Score=163.01 Aligned_cols=213 Identities=13% Similarity=-0.003 Sum_probs=145.0
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 179 (442)
...++++++||||+|+||.+++++|+++|++|++++|... .+.+.......++.++.+|+.+.. +.
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~--~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g 286 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA--AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHG 286 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG--HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHST
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcC
Confidence 3446789999999999999999999999999999988531 122221112224568888987652 12
Q ss_pred C-CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc----CC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 E-VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~-~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~----g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+ +|+||||||........ +.++..+++|+.|+.++.+++... +. +||++||...+.
T Consensus 287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~-------------- 352 (454)
T 3u0b_A 287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA-------------- 352 (454)
T ss_dssp TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH--------------
T ss_pred CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC--------------
Confidence 3 99999999976543222 246678999999999999998765 43 899999977542
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|...+.+++.++.+ .|+++.+|.||.+..+.... +.......... ......
T Consensus 353 --g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-----~~~~~~~~~~~--------~~~l~r 417 (454)
T 3u0b_A 353 --GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEA-----IPLATREVGRR--------LNSLFQ 417 (454)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC---------------CHHHHH--------SBTTSS
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhh-----cchhhHHHHHh--------hccccC
Confidence 1123368999999999888887765 48999999999998764210 00000000000 001123
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+...+|+|+++++++.... +| ++++.++.
T Consensus 418 ~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 418 GGQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp CBCHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred CCCHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 4578999999999987543 35 77777653
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=152.14 Aligned_cols=215 Identities=12% Similarity=0.069 Sum_probs=144.2
Q ss_pred CCCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------------cC
Q 013467 114 RKGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------LL 179 (442)
Q Consensus 114 ~~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 179 (442)
.++|+|+|||| +|+||++++++|+++|++|++++|+.....+.....+ ..++.++.+|+.+.. +.
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 34578999999 9999999999999999999999986432112222222 235678888987641 12
Q ss_pred ---CCCEEEEecccCCC-----Cc----ccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCC
Q 013467 180 ---EVDQIYHLACPASP-----VH----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKE 244 (442)
Q Consensus 180 ---~~d~Vih~A~~~~~-----~~----~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E 244 (442)
++|+||||||.... .. ..+++...+++|+.++.++++++... +.++|++||...++
T Consensus 84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~--------- 154 (269)
T 2h7i_A 84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--------- 154 (269)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC---------
T ss_pred CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc---------
Confidence 79999999997541 11 12235678899999999999998653 23899999876432
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-----CCCch---HHHHHHHHHcCC
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-----DDGRV---VSNFVAQALRKE 313 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-----~~~~~---~~~~~~~~~~~~ 313 (442)
......|+.+|.+.+.+++.++.+. |+++.+|+||.+..+.... ..... ...+...+....
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 226 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccC
Confidence 1123679999999999999987764 8999999999987642100 00000 000111111111
Q ss_pred CcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 314 PLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 314 ~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++. +.+...+|+|+++++++.... .| .+.+.+|
T Consensus 227 p~~--------rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 263 (269)
T 2h7i_A 227 PIG--------WNMKDATPVAKTVCALLSDWLPATTGDIIYADGG 263 (269)
T ss_dssp TTC--------CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred Ccc--------cCCCCHHHHHHHHHHHhCchhccCcceEEEecCC
Confidence 110 135667999999999997543 35 6776665
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-18 Score=158.42 Aligned_cols=203 Identities=12% Similarity=-0.003 Sum_probs=137.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh---CCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccc----------
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIA---RGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPL---------- 177 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~---~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~---------- 177 (442)
++++++||||+|+||++++++|++ +|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQ-LKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHH-HHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHH-HHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999 89999999986432111 11111 1346788899987641
Q ss_pred ----cCCCC--EEEEecccCCC--C-----cccCChhHHHHHhHHHHHHHHHHHHHc------CC-eEEEeecCccccCC
Q 013467 178 ----LLEVD--QIYHLACPASP--V-----HYKFNPVKTIKTNVVGTLNMLGLAKRV------GA-RFLLTSTSEVYGDP 237 (442)
Q Consensus 178 ----~~~~d--~Vih~A~~~~~--~-----~~~~~~~~~~~~nv~gt~~ll~~a~~~------g~-r~i~iSS~~vy~~~ 237 (442)
..++| +||||||.... . ...++++..+++|+.|+.++++++... +. +||++||...+.
T Consensus 84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 161 (259)
T 1oaa_A 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ-- 161 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS--
T ss_pred hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC--
Confidence 12468 99999997532 1 112346778999999999999988642 33 799999987752
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc-CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCC-c
Q 013467 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP-L 315 (442)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (442)
+......|+.+|.+.+.+++.++.+. ++++.+|+||.+-.+. ...+... ..... .
T Consensus 162 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~--------~~~~~~~-~~~~~~~ 218 (259)
T 1oaa_A 162 --------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM--------QQLARET-SKDPELR 218 (259)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH--------HHHHHHH-CSCHHHH
T ss_pred --------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch--------HHHHhhc-cCChhHH
Confidence 22234689999999999999998775 4889999999876532 1111100 00000 0
Q ss_pred EEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 316 ~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
..+........+...+|+|+++++++..
T Consensus 219 ~~~~~~~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 219 SKLQKLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCcCCHHHHHHHHHHHHhh
Confidence 0000000112467899999999998864
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=155.75 Aligned_cols=162 Identities=21% Similarity=0.138 Sum_probs=119.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc--cc-----cCCCceeEEeccccccc-----c-----
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM--HH-----FGNPNFELIRHDVVEPL-----L----- 178 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~--~~-----~~~~~v~~~~~D~~~~~-----~----- 178 (442)
+++|+||||+|+||++++++|+++|++|++++|.......... .. ....++.++.+|+.+.. +
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 4589999999999999999999999999888875432221110 00 01246888999987742 1
Q ss_pred CCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|+||||||....... .+++...+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~-------------- 147 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM-------------- 147 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS--------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc--------------
Confidence 249999999996543221 1246778999999999999885 44555 999999987652
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCC
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPR 293 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~ 293 (442)
+......|+.+|.+.+.+++.++.+ .|+++++|+||.|..+.
T Consensus 148 --~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 --GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 1122368999999999999998775 58999999999998764
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=160.37 Aligned_cols=215 Identities=17% Similarity=0.208 Sum_probs=147.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCCCCc--ccccccc--CCCceeEEeccccccc-----cC----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRK--ENVMHHF--GNPNFELIRHDVVEPL-----LL---- 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~-----~~---- 179 (442)
..+++|+||||+|+||.+++++|+++|++ |++++|+..... +.+...+ ...++.++.+|+.+.. +.
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~ 303 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 303 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 35679999999999999999999999985 899988643211 1111111 2346788999987751 22
Q ss_pred --CCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCcc-ccCCCCCCCCCCCCCCCC
Q 013467 180 --EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV-YGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 --~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~v-y~~~~~~~~~E~~~~~~~ 251 (442)
.+|+|||+||....... .+.....+++|+.|+.++.++++..+. +||++||... +|..
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~-------------- 369 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAP-------------- 369 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCT--------------
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCC--------------
Confidence 36999999997554321 123566788999999999999988876 9999999754 4321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|...+.+.+++. ..|+++++|+||.+.++++.. ...... +. .....+++.+
T Consensus 370 ---g~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~-------~~~~~~--------~~--~~g~~~i~~e 428 (486)
T 2fr1_A 370 ---GLGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAE-------GPVADR--------FR--RHGVIEMPPE 428 (486)
T ss_dssp ---TCTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC---------------------------CT--TTTEECBCHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccc-------hhHHHH--------HH--hcCCCCCCHH
Confidence 23679999999999887764 459999999999998765311 000000 00 1124678999
Q ss_pred HHHHHHHHHHcCCCCccEEecCCCccCHHHHHHHHH
Q 013467 332 DLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQ 367 (442)
Q Consensus 332 Dva~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~ 367 (442)
|+++++..++..+..... +. .+.|..+...+.
T Consensus 429 ~~a~~l~~~l~~~~~~~~-v~---~~d~~~~~~~~~ 460 (486)
T 2fr1_A 429 TACRALQNALDRAEVCPI-VI---DVRWDRFLLAYT 460 (486)
T ss_dssp HHHHHHHHHHHTTCSSCE-EC---EECHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEE-EE---eCCHHHHhhhhc
Confidence 999999999987665433 22 256777766544
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=156.98 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=117.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCC-CCccccccccCC----CceeEEeccccccccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFT-GRKENVMHHFGN----PNFELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~-~~~~~~~~~~~~----~~v~~~~~D~~~~~~~~~d~ 183 (442)
+|+|+||||+||||++++..|+++|+ +|+++++... .+.......+.. ...++...+....++.++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 46899999999999999999999986 8999987421 000110001110 11233332333456789999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeecCc-cccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE-VYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
|||+||.... ...+..++++.|+.++.++++++++.+ . +|+++|+.. +.. +..++.. ....+...|
T Consensus 84 Vih~Ag~~~~--~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~---~~~~p~~~y 153 (327)
T 1y7t_A 84 ALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNA---PGLNPRNFT 153 (327)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTC---TTSCGGGEE
T ss_pred EEECCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHc---CCCChhhee
Confidence 9999997542 235677899999999999999999975 3 777777643 110 0111100 023344679
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCC
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~ 294 (442)
+.+|+..|++...+++..|++++++|+++|||++.
T Consensus 154 g~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 154 AMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp ECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred ccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 99999999999999888899999999999999863
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=154.61 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=150.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCC--cccccccc--CCCceeEEeccccccc-----c--CCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGR--KENVMHHF--GNPNFELIRHDVVEPL-----L--LEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~--~~~~~~~~--~~~~v~~~~~D~~~~~-----~--~~~d 182 (442)
.+++|+||||+|+||.+++++|+++|+ .|++++|+.... .+.+...+ ...++.++.+|+.+.. + ..+|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 467999999999999999999999999 588888864321 11111111 1346888999998752 2 2499
Q ss_pred EEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc-CC-eEEEeecCc-cccCCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE-VYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~-g~-r~i~iSS~~-vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
+|||+||........ +.....+++|+.|+.++.+++... +. +||++||.. ++|. ..
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~-----------------~g 400 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN-----------------AG 400 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC-----------------TT
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC-----------------CC
Confidence 999999976543222 235667899999999999998876 55 899999975 4432 12
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
...|+.+|...+.+++.+ +..|+++++|+||.+.+.++.. . .... .+.. ....+++.+|+++
T Consensus 401 ~~~YaaaKa~ld~la~~~-~~~gi~v~sv~pG~~~~tgm~~--~-~~~~---~~~~-----------~g~~~l~~e~~a~ 462 (511)
T 2z5l_A 401 QGAYAAANAALDALAERR-RAAGLPATSVAWGLWGGGGMAA--G-AGEE---SLSR-----------RGLRAMDPDAAVD 462 (511)
T ss_dssp BHHHHHHHHHHHHHHHHH-HTTTCCCEEEEECCBCSTTCCC--C-HHHH---HHHH-----------HTBCCBCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHcCCcEEEEECCcccCCcccc--c-ccHH---HHHh-----------cCCCCCCHHHHHH
Confidence 368999999999999876 4569999999999885444321 1 1111 1111 1124678999999
Q ss_pred HHHHHHcCCCCccEEecCCCccCHHHHHHHHHHH
Q 013467 336 GLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQET 369 (442)
Q Consensus 336 ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~ 369 (442)
++..++..+...++ +. .+.|..+...+...
T Consensus 463 ~l~~al~~~~~~v~-v~---~~d~~~~~~~~~~~ 492 (511)
T 2z5l_A 463 ALLGAMGRNDVCVT-VV---DVDWERFAPATNAI 492 (511)
T ss_dssp HHHHHHHHTCSEEE-EC---CBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEE-EE---eCCHHHHHhhhccc
Confidence 99999987655432 22 35687777666543
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=140.18 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=135.3
Q ss_pred CCCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCCC----------CCccccccccCCC---ceeEEec-------
Q 013467 114 RKGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFFT----------GRKENVMHHFGNP---NFELIRH------- 171 (442)
Q Consensus 114 ~~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~~----------~~~~~~~~~~~~~---~v~~~~~------- 171 (442)
+++++++|||| +|+||++++++|+++|++|++++|+.. ...+......... .+.++..
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKP 86 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSST
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence 45679999999 899999999999999999999986420 0101111100000 0122222
Q ss_pred -----cccc-------------c-------ccCCCCEEEEecccCC--CCc----ccCChhHHHHHhHHHHHHHHHHHHH
Q 013467 172 -----DVVE-------------P-------LLLEVDQIYHLACPAS--PVH----YKFNPVKTIKTNVVGTLNMLGLAKR 220 (442)
Q Consensus 172 -----D~~~-------------~-------~~~~~d~Vih~A~~~~--~~~----~~~~~~~~~~~nv~gt~~ll~~a~~ 220 (442)
|+.+ . .+.++|+||||||... ... ..+++...+++|+.++.++++++..
T Consensus 87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 166 (315)
T 2o2s_A 87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGP 166 (315)
T ss_dssp TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHST
T ss_pred chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2221 1 1236999999999642 111 1223667899999999999999864
Q ss_pred c---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCC
Q 013467 221 V---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (442)
Q Consensus 221 ~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~ 292 (442)
. +.++|++||...+.. .... ..|+.+|.+.+.+++.++.+ .|+++.+|+||+|..+
T Consensus 167 ~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~ 230 (315)
T 2o2s_A 167 IMNEGGSAVTLSYLAAERV----------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSR 230 (315)
T ss_dssp TEEEEEEEEEEEEGGGTSC----------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCH
T ss_pred HHhcCCEEEEEeccccccc----------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccch
Confidence 3 248999999875421 1112 36999999999999887765 4899999999998764
Q ss_pred CCcc----CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCC
Q 013467 293 RMCI----DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNP 354 (442)
Q Consensus 293 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~ 354 (442)
.... ....+...+...+....+ ...+...+|+|+++++++... ..| .+.+.+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 291 (315)
T 2o2s_A 231 AASAIGKSGEKSFIDYAIDYSYNNAP---------LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG 291 (315)
T ss_dssp HHHHTTCSSSSCHHHHHHHHHHHHSS---------SCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhhhccccccchhHHHHHHHHhccCC---------CCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCC
Confidence 2100 001111222111111111 123567899999999998753 246 5666655
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-15 Score=142.64 Aligned_cols=221 Identities=14% Similarity=0.017 Sum_probs=119.9
Q ss_pred CCCCEEEEEcC--CchhHHHHHHHHHhCCCeEEEEeCCC----------CCCccc-----------cccccCCC-----c
Q 013467 114 RKGLRIVVTGG--AGFVGSHLVDRLIARGDSVIVVDNFF----------TGRKEN-----------VMHHFGNP-----N 165 (442)
Q Consensus 114 ~~~~~vlVtGa--tG~lG~~lv~~Ll~~g~~V~~l~r~~----------~~~~~~-----------~~~~~~~~-----~ 165 (442)
+++++++|||| +|+||++++++|+++|++|++++|+. ..+.+. ....+... .
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 45679999999 89999999999999999999998631 000000 00000000 0
Q ss_pred eeEEecc------------ccc-------------c-------ccCCCCEEEEecccCC--CCc----ccCChhHHHHHh
Q 013467 166 FELIRHD------------VVE-------------P-------LLLEVDQIYHLACPAS--PVH----YKFNPVKTIKTN 207 (442)
Q Consensus 166 v~~~~~D------------~~~-------------~-------~~~~~d~Vih~A~~~~--~~~----~~~~~~~~~~~n 207 (442)
..++..| +.+ . .+.++|+||||||... ... ..+.+...+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 1333222 221 1 1236899999999642 111 122366789999
Q ss_pred HHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHhh----cCC
Q 013467 208 VVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----AGV 279 (442)
Q Consensus 208 v~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~-~~Y~~sK~~~E~~v~~~~~~----~g~ 279 (442)
+.++.++++++... +.++|++||...+. +.... ..|+.+|.+.+.+++.++.+ .|+
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~gI 230 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEK----------------VIPGYGGGMSSAKAALESDCRTLAFEAGRARAV 230 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------THHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEecccccc----------------ccCccchhhHHHHHHHHHHHHHHHHHhccccCe
Confidence 99999999998654 24899999976542 11112 46999999999999888765 589
Q ss_pred cEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC---CCc-cEEecCCC
Q 013467 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE---HVG-PFNLGNPG 355 (442)
Q Consensus 280 ~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~---~~g-~~~i~~~~ 355 (442)
++.+|+||+|..+............+...... .+........+...+|+|+++++++... ..| .+.+.+|.
T Consensus 231 rvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~ 305 (319)
T 2ptg_A 231 RVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNGL 305 (319)
T ss_dssp EEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred eEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 99999999988764210000000000000000 0000011234668999999999998753 245 66666653
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=155.95 Aligned_cols=206 Identities=16% Similarity=-0.004 Sum_probs=127.7
Q ss_pred CCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC--------CCccccccccCCCceeEEecccccc----
Q 013467 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT--------GRKENVMHHFGNPNFELIRHDVVEP---- 176 (442)
Q Consensus 109 ~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~--------~~~~~~~~~~~~~~v~~~~~D~~~~---- 176 (442)
.+....++++++||||+|+||++++++|+++|++|++++|... ...+.....+...... ..+|+.+.
T Consensus 12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~ 90 (613)
T 3oml_A 12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGA 90 (613)
T ss_dssp ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHH
Confidence 3445677889999999999999999999999999999987211 1111111111111111 11343322
Q ss_pred --------ccCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCC
Q 013467 177 --------LLLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 177 --------~~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~ 239 (442)
.+.++|+||||||....... .++++..+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 91 ~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~---- 166 (613)
T 3oml_A 91 KVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY---- 166 (613)
T ss_dssp HHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH----
T ss_pred HHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC----
Confidence 12358999999997654322 2346778999999999999887 45554 999999976431
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+-... .+. .
T Consensus 167 ------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t~~~-----------------~~~-~- 215 (613)
T 3oml_A 167 ------------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAASRMT-----------------EGI-L- 215 (613)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------CCC-C-
T ss_pred ------------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCChhh-----------------hhc-c-
Confidence 11223679999999999999987764 8999999998642110 000 0
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC--Cc-cEEecCC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH--VG-PFNLGNP 354 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~ 354 (442)
.......+..+|+|.++++++.... .| .+++.+|
T Consensus 216 ----~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdGG 252 (613)
T 3oml_A 216 ----PDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAG 252 (613)
T ss_dssp ----CHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred ----chhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECCC
Confidence 0011233467999999999887652 34 6666554
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-14 Score=136.29 Aligned_cols=161 Identities=7% Similarity=-0.048 Sum_probs=112.3
Q ss_pred CCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCC------------CCCcccccc-ccCCCceeEEecccccc--c-
Q 013467 116 GLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFF------------TGRKENVMH-HFGNPNFELIRHDVVEP--L- 177 (442)
Q Consensus 116 ~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~------------~~~~~~~~~-~~~~~~v~~~~~D~~~~--~- 177 (442)
+++++||||++ +||.+++++|+++|++|++.+|.. ......... ......+.++.+|+.+. .
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 46899999875 999999999999999999887543 001111100 00112356666666443 1
Q ss_pred -----------------------------cCCCCEEEEecccCC--CCc----ccCChhHHHHHhHHHHHHHHHHHHHc-
Q 013467 178 -----------------------------LLEVDQIYHLACPAS--PVH----YKFNPVKTIKTNVVGTLNMLGLAKRV- 221 (442)
Q Consensus 178 -----------------------------~~~~d~Vih~A~~~~--~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~- 221 (442)
+.++|++|||||... ... ..+.+...+++|+.++..+++++...
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 125899999999632 111 11236778999999999999988643
Q ss_pred --CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeCC
Q 013467 222 --GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS-CYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYGP 292 (442)
Q Consensus 222 --g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~-~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G~ 292 (442)
+.++|++||...+. +..... .|+.+|++.+.+++.++.+ .|+++.+|.||.|..+
T Consensus 162 ~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 162 KPQSSIISLTYHASQK----------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEECGGGTS----------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred hhCCeEEEEeCccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 13899999977542 122223 7999999999999887654 5899999999998754
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=145.48 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=139.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCC--cccccccc--CCCceeEEeccccccc-----c------C
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGR--KENVMHHF--GNPNFELIRHDVVEPL-----L------L 179 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~--~~~~~~~~--~~~~v~~~~~D~~~~~-----~------~ 179 (442)
+++|+||||+|+||.+++++|+++|+ .|+++.|+.... .+.+...+ ...++.++.+|+.+.. + .
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 37999999999999999999999998 788888753221 11111111 2347888999987751 1 2
Q ss_pred CCCEEEEecccC-CCCcc----cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPA-SPVHY----KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 180 ~~d~Vih~A~~~-~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
.+|+||||||.. ..... .+.+...+++|+.|+.++.+++...+. +||++||...+. ..
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~----------------g~ 382 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW----------------GS 382 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------TC
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC----------------CC
Confidence 589999999976 22211 123567899999999999999988776 899999976431 11
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
.....|+.+|...+.+.+++ +..|+++++|.||.+.+.++..+. .....+.+. . ...+..++.
T Consensus 383 ~g~~~YaAaKa~ldala~~~-~~~Gi~v~sV~pG~w~~~gm~~~~-----~~~~~l~~~-g----------~~~l~pe~~ 445 (496)
T 3mje_A 383 GGQPGYAAANAYLDALAEHR-RSLGLTASSVAWGTWGEVGMATDP-----EVHDRLVRQ-G----------VLAMEPEHA 445 (496)
T ss_dssp TTCHHHHHHHHHHHHHHHHH-HHTTCCCEEEEECEESSSCC-----------CHHHHHT-T----------EEEECHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH-HhcCCeEEEEECCcccCCccccCh-----HHHHHHHhc-C----------CCCCCHHHH
Confidence 22368999999999998876 456999999999998877653211 111111111 1 123467899
Q ss_pred HHHHHHHHcCCCCc
Q 013467 334 VEGLMRLMEGEHVG 347 (442)
Q Consensus 334 a~ai~~~l~~~~~g 347 (442)
++++..++..+...
T Consensus 446 ~~~l~~~l~~~~~~ 459 (496)
T 3mje_A 446 LGALDQMLENDDTA 459 (496)
T ss_dssp HHHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCce
Confidence 99999999876543
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=141.31 Aligned_cols=218 Identities=11% Similarity=0.072 Sum_probs=145.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEE-eCCCCC------------Ccccccccc--CCCceeEEeccccccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVV-DNFFTG------------RKENVMHHF--GNPNFELIRHDVVEPL 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l-~r~~~~------------~~~~~~~~~--~~~~v~~~~~D~~~~~ 177 (442)
.++++|+||||+|+||.+++++|+++|++ |+++ +|+... ..+.+...+ ...++.++.+|+.+..
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 35679999999999999999999999997 5555 675321 111111111 1346888999997751
Q ss_pred -----------cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHcC-----C-eEEEeecCccccC
Q 013467 178 -----------LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVG-----A-RFLLTSTSEVYGD 236 (442)
Q Consensus 178 -----------~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~g-----~-r~i~iSS~~vy~~ 236 (442)
...+|+||||||........ +.....+++|+.|+.++.+++.... . +||++||+..+.
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~- 407 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW- 407 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT-
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC-
Confidence 13589999999976543222 2356789999999999999987654 4 899999977542
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
.......|+.+|...+.+.+++ +..|+++++|.||.+ +.++.. .. .... .+.+. .
T Consensus 408 ---------------g~~g~~~YaaaKa~l~~lA~~~-~~~gi~v~sI~pG~~-~tgm~~-~~-~~~~---~~~~~-g-- 462 (525)
T 3qp9_A 408 ---------------GGAGQGAYAAGTAFLDALAGQH-RADGPTVTSVAWSPW-EGSRVT-EG-ATGE---RLRRL-G-- 462 (525)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHTSC-CSSCCEEEEEEECCB-TTSGGG-SS-HHHH---HHHHT-T--
T ss_pred ---------------CCCCCHHHHHHHHHHHHHHHHH-HhCCCCEEEEECCcc-cccccc-ch-hhHH---HHHhc-C--
Confidence 1122368999999999887655 345999999999998 433321 11 1111 11111 0
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHH
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQET 369 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~ 369 (442)
...+..+++++++..++..+...+.. -.+.|..+...+...
T Consensus 463 --------~~~l~pee~a~~l~~~l~~~~~~v~v----~~~dw~~~~~~~~~~ 503 (525)
T 3qp9_A 463 --------LRPLAPATALTALDTALGHGDTAVTI----ADVDWSSFAPGFTTA 503 (525)
T ss_dssp --------BCCBCHHHHHHHHHHHHHHTCSEEEE----CCBCHHHHHHHHHSS
T ss_pred --------CCCCCHHHHHHHHHHHHhCCCCeEEE----EeCCHHHHHhhcccc
Confidence 13467899999999999876544322 145677666655433
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=135.89 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=133.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccc-ccc---------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDV-VEP---------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~-~~~---------~~~~ 180 (442)
..++++++||||+++||+.++++|+++|++|++.+|.. .+.....+ ...++..+.+|+ .+. .+.+
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~---~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~ 395 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD---ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT 395 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC---CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc---HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence 45678999999999999999999999999999987631 11111111 123455667777 321 2346
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|++|||||........ ++++..+++|+.|+.++.+++ ++.+. ++|++||...+-
T Consensus 396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~---------------- 459 (604)
T 2et6_A 396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY---------------- 459 (604)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------------
Confidence 99999999975433222 347788999999998887766 34444 999999976431
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.....+++.++.+ .|+++.+|.||. ..+ + ...... . ......
T Consensus 460 ~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~-m-------~~~~~~----~----------~~~~~~ 516 (604)
T 2et6_A 460 GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA-M-------TLSIMR----E----------QDKNLY 516 (604)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC-C------------------------------CCSS
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc-c-------ccccCc----h----------hhccCC
Confidence 1112367999999999999988775 489999999983 221 1 111100 0 001234
Q ss_pred CHHHHHHHHHHHHcCCC--Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH--VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~--~g-~~~i~~~ 354 (442)
..+|+|.++++++.... .| .+.+.+|
T Consensus 517 ~pe~vA~~v~~L~s~~~~itG~~~~vdGG 545 (604)
T 2et6_A 517 HADQVAPLLVYLGTDDVPVTGETFEIGGG 545 (604)
T ss_dssp CGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred CHHHHHHHHHHHhCCccCCCCcEEEECCC
Confidence 67999999998886532 45 5665554
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-12 Score=143.50 Aligned_cols=199 Identities=17% Similarity=0.173 Sum_probs=133.5
Q ss_pred CCCCCEEEEEcCCch-hHHHHHHHHHhCCCeEEEEeCCCCCCccccc----cccC--CCceeEEecccccc---------
Q 013467 113 KRKGLRIVVTGGAGF-VGSHLVDRLIARGDSVIVVDNFFTGRKENVM----HHFG--NPNFELIRHDVVEP--------- 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~-lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~----~~~~--~~~v~~~~~D~~~~--------- 176 (442)
..++++++||||+|+ ||.+++++|+++|++|+++++......+... .... ..++.++.+|+.+.
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 456789999999998 9999999999999999998543222211111 1111 34678889998764
Q ss_pred ---c-----cC-CCCEEEEecccCCCC-ccc------CChhHHHHHhHHHHHHHHHHHHHc------C-CeEEEeecCcc
Q 013467 177 ---L-----LL-EVDQIYHLACPASPV-HYK------FNPVKTIKTNVVGTLNMLGLAKRV------G-ARFLLTSTSEV 233 (442)
Q Consensus 177 ---~-----~~-~~d~Vih~A~~~~~~-~~~------~~~~~~~~~nv~gt~~ll~~a~~~------g-~r~i~iSS~~v 233 (442)
. +. ++|+||||||..... ... +.+...+++|+.++.+++++++.. + .+||++||...
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 1 22 599999999975433 211 235778999999999999987432 2 27999999764
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH-HHHHHhhcC--CcEEEEeeCceeCCCCccCCCchHHHHHHHHH
Q 013467 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL-TMDYHRGAG--VEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL 310 (442)
Q Consensus 234 y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~-v~~~~~~~g--~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~ 310 (442)
+. + ....|+.+|...+.+ .+.++++.+ +++.+|.||++.+..+.... ..... ..
T Consensus 832 ~~----------------g--g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~-~~~~~----~~ 888 (1887)
T 2uv8_A 832 TF----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NIIAE----GI 888 (1887)
T ss_dssp CS----------------S--CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C-CTTHH----HH
T ss_pred cc----------------C--CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc-hhHHH----HH
Confidence 31 1 125799999999998 666665443 89999999999853221111 11111 11
Q ss_pred cCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 311 RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 311 ~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...++ .+...+|+|.++++++...
T Consensus 889 ~~~pl----------r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 889 EKMGV----------RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp HTTSC----------CCEEHHHHHHHHHGGGSHH
T ss_pred HhcCC----------CCCCHHHHHHHHHHHhCCC
Confidence 11111 2346899999999988765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=132.85 Aligned_cols=219 Identities=16% Similarity=0.122 Sum_probs=139.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC--------CCccccccccC--CCceeEEeccccc--------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT--------GRKENVMHHFG--NPNFELIRHDVVE-------- 175 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~--------~~~~~~~~~~~--~~~v~~~~~D~~~-------- 175 (442)
.++++++||||+++||+.+++.|+++|++|++.+|... ...+.....+. ...+.....|..+
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~ 85 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA 85 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999987531 11111111111 1111111122211
Q ss_pred -cccCCCCEEEEecccCCCCcc----cCChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCcc-ccCCCCCCCCC
Q 013467 176 -PLLLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEV-YGDPLQHPQKE 244 (442)
Q Consensus 176 -~~~~~~d~Vih~A~~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~v-y~~~~~~~~~E 244 (442)
..+.++|++|||||....... .++++..+++|+.|+..+.+++ ++.+. ++|++||... ++.
T Consensus 86 ~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~-------- 157 (604)
T 2et6_A 86 VKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGN-------- 157 (604)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC--------
Confidence 123469999999997543222 2347789999999998887765 34454 9999999764 321
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
.....|+.+|.....+++.++.+ .|+++.+|.|+. .. .+.... .+
T Consensus 158 ---------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg~-~T--------~m~~~~-------~~------- 205 (604)
T 2et6_A 158 ---------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPLA-RS--------RMTESI-------MP------- 205 (604)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CC--------HHHHTT-------SC-------
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccCC-cC--------cccccc-------CC-------
Confidence 12357999999999999998776 489999999962 11 111000 00
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC--Cc-cEEecCC------------------CccCHHHHHHHHHHHhCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH--VG-PFNLGNP------------------GEFTMLELAQVVQETIDP 372 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~------------------~~~s~~dl~~~l~~~~g~ 372 (442)
.........+|+|.++++++.... .| .+.+.+| ..++..++.+.+.++.+.
T Consensus 206 ~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (604)
T 2et6_A 206 PPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILDY 277 (604)
T ss_dssp HHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTCC
T ss_pred hhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhch
Confidence 001123468999999999887542 23 4444332 346788888888776543
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=120.90 Aligned_cols=165 Identities=13% Similarity=0.014 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHh-CCCeEEEEeCCCCCCccc-----------cccc--cCCCceeEEecccccc---
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNFFTGRKEN-----------VMHH--FGNPNFELIRHDVVEP--- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~-~g~~V~~l~r~~~~~~~~-----------~~~~--~~~~~v~~~~~D~~~~--- 176 (442)
..+|+++||||+++||..+++.|++ .|.+|++++|........ .... .....+..+.+|+.+.
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4467999999999999999999999 999999998865433211 1111 1234577888998775
Q ss_pred ---------ccCCCCEEEEecccCC---------------CC-----------------------cccCChhHHHHHhHH
Q 013467 177 ---------LLLEVDQIYHLACPAS---------------PV-----------------------HYKFNPVKTIKTNVV 209 (442)
Q Consensus 177 ---------~~~~~d~Vih~A~~~~---------------~~-----------------------~~~~~~~~~~~~nv~ 209 (442)
.+.++|++|||||... +. ...+.++..+++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 2346999999998631 10 011235667788877
Q ss_pred HHH-HHHHHHHHc-----CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---c-CC
Q 013467 210 GTL-NMLGLAKRV-----GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---A-GV 279 (442)
Q Consensus 210 gt~-~ll~~a~~~-----g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~-g~ 279 (442)
+.. .+++++... +.++|.+||....-. .+......|+.+|...+.+++.++.+ . |+
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~--------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GI 270 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT--------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGG 270 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCe
Confidence 765 555554432 348999999764311 12211268999999999999998775 3 89
Q ss_pred cEEEEeeCceeCC
Q 013467 280 EVRIARIFNTYGP 292 (442)
Q Consensus 280 ~~~iiRp~~v~G~ 292 (442)
++.++.||.+-.+
T Consensus 271 RVNaVaPG~i~T~ 283 (405)
T 3zu3_A 271 DARVSVLKAVVSQ 283 (405)
T ss_dssp EEEEEECCCCCCH
T ss_pred EEEEEEeCCCcCc
Confidence 9999999988765
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=138.07 Aligned_cols=218 Identities=18% Similarity=0.136 Sum_probs=141.3
Q ss_pred CCCCCEEEEEcCCch-hHHHHHHHHHhCCCeEEEEeCCCCCCccc----cccccC--CCceeEEecccccc---------
Q 013467 113 KRKGLRIVVTGGAGF-VGSHLVDRLIARGDSVIVVDNFFTGRKEN----VMHHFG--NPNFELIRHDVVEP--------- 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~-lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~--~~~v~~~~~D~~~~--------- 176 (442)
..++++||||||+|+ ||.+++++|+++|++|+++++........ +...+. ..++.++.+|+.+.
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 456789999999999 99999999999999999986432222111 111111 34678889998764
Q ss_pred ---c---cC-CCCEEEEecccCCCC-ccc------CChhHHHHHhHHHHHHHHHHHHH------cC-CeEEEeecCcccc
Q 013467 177 ---L---LL-EVDQIYHLACPASPV-HYK------FNPVKTIKTNVVGTLNMLGLAKR------VG-ARFLLTSTSEVYG 235 (442)
Q Consensus 177 ---~---~~-~~d~Vih~A~~~~~~-~~~------~~~~~~~~~nv~gt~~ll~~a~~------~g-~r~i~iSS~~vy~ 235 (442)
. +. ++|+||||||..... ... +.+...+++|+.++.+++++++. .+ .+||++||...+.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~ 808 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF 808 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence 1 23 589999999975433 211 23577899999999998877432 12 3899999975431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh-c--CCcEEEEeeCcee-CCCCccCCCchHHHHHHHHHc
Q 013467 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-A--GVEVRIARIFNTY-GPRMCIDDGRVVSNFVAQALR 311 (442)
Q Consensus 236 ~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~-~--g~~~~iiRp~~v~-G~~~~~~~~~~~~~~~~~~~~ 311 (442)
+ ....|+.+|...+.+++.+..+ . ++++.+|.||++- .+... . .......+.
T Consensus 809 ----------------g--g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~---~---~~~~~~~~~ 864 (1878)
T 2uv9_A 809 ----------------G--NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMS---A---NNLVAEGVE 864 (1878)
T ss_dssp ----------------S--CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCS---H---HHHTHHHHH
T ss_pred ----------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccc---c---chhhHHHHH
Confidence 1 1257999999999998765433 2 3899999999987 43211 0 111112222
Q ss_pred CCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC----Cc-cEEe--cCCC--ccCHHHHHH
Q 013467 312 KEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH----VG-PFNL--GNPG--EFTMLELAQ 364 (442)
Q Consensus 312 ~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~----~g-~~~i--~~~~--~~s~~dl~~ 364 (442)
..++ .+...+|+|.++++++.... .| .+.+ .+|. ...+.++..
T Consensus 865 ~~pl----------r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~~~~l~el~~ 916 (1878)
T 2uv9_A 865 KLGV----------RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQFIPDLKGLMT 916 (1878)
T ss_dssp TTTC----------CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGGCTTHHHHHH
T ss_pred hcCC----------CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCccccCCHHHHHH
Confidence 2111 23478999999999886543 24 5554 2442 234555544
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=123.38 Aligned_cols=165 Identities=13% Similarity=-0.018 Sum_probs=114.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHh-CCCeEEEEeCCCCCCccc-----------ccccc--CCCceeEEecccccc----
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNFFTGRKEN-----------VMHHF--GNPNFELIRHDVVEP---- 176 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~-~g~~V~~l~r~~~~~~~~-----------~~~~~--~~~~v~~~~~D~~~~---- 176 (442)
.+|++|||||+++||..+++.|++ .|.+|++++|......+. ..... ....+..+.+|+.++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 367999999999999999999999 999999999875443321 00111 224567788998764
Q ss_pred --------cc-CCCCEEEEecccC-------------CCCc-------------------------ccCChhHHHHHhHH
Q 013467 177 --------LL-LEVDQIYHLACPA-------------SPVH-------------------------YKFNPVKTIKTNVV 209 (442)
Q Consensus 177 --------~~-~~~d~Vih~A~~~-------------~~~~-------------------------~~~~~~~~~~~nv~ 209 (442)
.+ .++|++|||||.. .... ..+.++..+++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 34 5689999999862 1111 11224556666666
Q ss_pred HHH-HHHHHHHHc-----CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCc
Q 013467 210 GTL-NMLGLAKRV-----GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVE 280 (442)
Q Consensus 210 gt~-~ll~~a~~~-----g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~ 280 (442)
++. .+++++... +.++|++||....-. .+......|+.+|.+.+.+.+.++.+. |++
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~--------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIR 285 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEIT--------------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGG 285 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG--------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEE
Confidence 554 556655432 237999999764310 111112579999999999999988764 899
Q ss_pred EEEEeeCceeCCC
Q 013467 281 VRIARIFNTYGPR 293 (442)
Q Consensus 281 ~~iiRp~~v~G~~ 293 (442)
+.+|.||.|-.+.
T Consensus 286 VNaVaPG~i~T~~ 298 (422)
T 3s8m_A 286 ANVAVLKSVVTQA 298 (422)
T ss_dssp EEEEEECCCCCTT
T ss_pred EEEEEcCCCcChh
Confidence 9999999988764
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=137.83 Aligned_cols=199 Identities=18% Similarity=0.159 Sum_probs=130.5
Q ss_pred CCCCCEEEEEcCCch-hHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----C--CCceeEEecccccc---------
Q 013467 113 KRKGLRIVVTGGAGF-VGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----G--NPNFELIRHDVVEP--------- 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~-lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~--~~~v~~~~~D~~~~--------- 176 (442)
..++++|+||||+|+ ||.+++++|+++|++|++++++.....+.....+ . ..++.++.+|+.+.
T Consensus 473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 456789999999998 9999999999999999998533222222211111 1 23578888998764
Q ss_pred ---c-----cC-CCCEEEEecccCCCC-ccc------CChhHHHHHhHHHHHHHHHHHHH------cC-CeEEEeecCcc
Q 013467 177 ---L-----LL-EVDQIYHLACPASPV-HYK------FNPVKTIKTNVVGTLNMLGLAKR------VG-ARFLLTSTSEV 233 (442)
Q Consensus 177 ---~-----~~-~~d~Vih~A~~~~~~-~~~------~~~~~~~~~nv~gt~~ll~~a~~------~g-~r~i~iSS~~v 233 (442)
. +. ++|+||||||..... ... +.+...+++|+.++.+++++++. .+ .+||++||...
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 1 22 589999999975433 221 23567899999999999988732 12 27999999754
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH-HHHHHhhcC--CcEEEEeeCceeCCCCccCCCchHHHHHHHHH
Q 013467 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL-TMDYHRGAG--VEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL 310 (442)
Q Consensus 234 y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~-v~~~~~~~g--~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~ 310 (442)
+. + ....|+.+|++.+.+ .+.++++.+ +++.+|.||++.|..+.... . ......
T Consensus 633 ~~----------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-e----~~~~~l 689 (1688)
T 2pff_A 633 TF----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-N----IIAEGI 689 (1688)
T ss_dssp TS----------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-T----TCSTTT
T ss_pred cc----------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-h----HHHHHH
Confidence 31 1 125799999999998 444444332 88889999998853321110 0 000001
Q ss_pred cCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 311 RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 311 ~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...+ ..+...+|+|+++++++...
T Consensus 690 ~~ip----------lR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 690 EKMG----------VRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp SSSS----------CCCCCCCTTHHHHHHHTSTT
T ss_pred HhCC----------CCCCCHHHHHHHHHHHhCCC
Confidence 1100 12346799999999998766
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=130.73 Aligned_cols=201 Identities=16% Similarity=0.136 Sum_probs=135.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHH-hCCC-eEEEEeCCCCCCc--ccccccc--CCCceeEEeccccccc-----c----
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLI-ARGD-SVIVVDNFFTGRK--ENVMHHF--GNPNFELIRHDVVEPL-----L---- 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll-~~g~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~-----~---- 178 (442)
..+++++||||+|.||..++++|+ ++|. .|++++|+..... +.....+ ...++.++.+|+.+.. +
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~ 607 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP 607 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 456799999999999999999999 7898 5888888632221 1111111 2346888999987751 1
Q ss_pred --CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 179 --LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 179 --~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
..+|+||||||........ ++++..+++|+.|+.++.+++... -+||++||...+- .
T Consensus 608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~-l~iV~~SS~ag~~----------------g 670 (795)
T 3slk_A 608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD-VALVLFSSVSGVL----------------G 670 (795)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT-SEEEEEEETHHHH----------------T
T ss_pred HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEccHHhcC----------------C
Confidence 1589999999976543322 246778999999999999987322 2899999977431 1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
......|+.+|...+.+.+++. ..|+++.+|.||.+-.+++.. ..-......+.+. . ...+..++
T Consensus 671 ~~g~~~YaAaka~~~alA~~~~-~~Gi~v~sI~pG~v~t~g~~~---~~~~~~~~~~~~~-g----------~~~l~~~e 735 (795)
T 3slk_A 671 SGGQGNYAAANSFLDALAQQRQ-SRGLPTRSLAWGPWAEHGMAS---TLREAEQDRLARS-G----------LLPISTEE 735 (795)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSCCCHHH---HHHHHHHHHHHHT-T----------BCCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HcCCeEEEEECCeECcchhhc---cccHHHHHHHHhc-C----------CCCCCHHH
Confidence 1223689999998888887764 569999999999887654210 0001111111111 1 12456688
Q ss_pred HHHHHHHHHcCCCC
Q 013467 333 LVEGLMRLMEGEHV 346 (442)
Q Consensus 333 va~ai~~~l~~~~~ 346 (442)
+...+..++..+..
T Consensus 736 ~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 736 GLSQFDAACGGAHT 749 (795)
T ss_dssp HHHHHHHHHTSSCS
T ss_pred HHHHHHHHHhCCCc
Confidence 88888888876654
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=114.97 Aligned_cols=165 Identities=9% Similarity=-0.129 Sum_probs=111.8
Q ss_pred CCCCEEEEEcCCchhHHH--HHHHHHhCCCeEEEEeCCCCCCc-----------cccccc--cCCCceeEEecccccc--
Q 013467 114 RKGLRIVVTGGAGFVGSH--LVDRLIARGDSVIVVDNFFTGRK-----------ENVMHH--FGNPNFELIRHDVVEP-- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~--lv~~Ll~~g~~V~~l~r~~~~~~-----------~~~~~~--~~~~~v~~~~~D~~~~-- 176 (442)
..+++++||||+++||.. +++.|.++|++|++++|...... +.+... .....+..+.+|+.+.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 356799999999999999 99999999999999998654322 111111 1234678889998775
Q ss_pred ----------ccCCCCEEEEecccC-------------CCCc-------------------------ccCChhHHHHHhH
Q 013467 177 ----------LLLEVDQIYHLACPA-------------SPVH-------------------------YKFNPVKTIKTNV 208 (442)
Q Consensus 177 ----------~~~~~d~Vih~A~~~-------------~~~~-------------------------~~~~~~~~~~~nv 208 (442)
.+.++|++|||||.. .... ..+.+...+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 223689999999863 0000 1112444555665
Q ss_pred HHHH-HHHHHHHHcC-----CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----cC
Q 013467 209 VGTL-NMLGLAKRVG-----ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----AG 278 (442)
Q Consensus 209 ~gt~-~ll~~a~~~g-----~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g 278 (442)
.+.. .+++++...+ .++|++||.+..-. .+......|+.+|.+.+.+++.++.+ .|
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~--------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~G 283 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT--------------YKIYREGTIGIAKKDLEDKAKLINEKLNRVIG 283 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC--------------CCccccHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 5544 4555554332 37999999764210 12222278999999999999888765 58
Q ss_pred CcEEEEeeCceeCC
Q 013467 279 VEVRIARIFNTYGP 292 (442)
Q Consensus 279 ~~~~iiRp~~v~G~ 292 (442)
+++.+|.||.|-.+
T Consensus 284 IrVN~V~PG~v~T~ 297 (418)
T 4eue_A 284 GRAFVSVNKALVTK 297 (418)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEECCcCcCh
Confidence 99999999988764
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-10 Score=108.13 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=108.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCC---CCCcc----ccccccCCCceeEEeccccccccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFF---TGRKE----NVMHHFGNPNFELIRHDVVEPLLLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~---~~~~~----~~~~~~~~~~v~~~~~D~~~~~~~~ 180 (442)
++|||+||||+||+|++++..|+..|. +|+++++.. ..+.+ .+.+.......++...+-..+++.+
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 356999999999999999999999885 788887741 11011 1111100111233332333457889
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C--eEEEeec-Ccc--ccCCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTST-SEV--YGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~--r~i~iSS-~~v--y~~~~~~~~~E~~~~~~~~~~ 254 (442)
+|+|||+||... .......+++..|+.++.++++.+++.+ . +||++|. ..+ |--... . ..+.
T Consensus 84 aD~Vi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~---~-------~~~p 151 (329)
T 1b8p_A 84 ADVALLVGARPR--GPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKS---A-------PSLP 151 (329)
T ss_dssp CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHT---C-------TTSC
T ss_pred CCEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHH---c-------CCCC
Confidence 999999998533 2334566788999999999999999884 3 7888886 211 100000 0 0011
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~ 292 (442)
+...|+.+++...++...+++..|++...++..+|+|.
T Consensus 152 ~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 11347777787888888888888888878887778884
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.5e-09 Score=122.77 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=111.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCCCCcc--cccccc--CCCceeEEeccccccc-----------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKE--NVMHHF--GNPNFELIRHDVVEPL----------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~~~~~--~~~~~~--~~~~v~~~~~D~~~~~----------- 177 (442)
..+++++||||+|.||..++++|+++|.+ |++++|+...... .....+ ...++.++.+|+.+..
T Consensus 1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A 1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 35689999999999999999999999996 7777776433211 111111 2346778888987641
Q ss_pred cCCCCEEEEecccCCCCc----ccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+..+|+||||||...... ..+++...+++|+.|+.++.+++...- .+||++||....-
T Consensus 1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~--------------- 2026 (2512)
T 2vz8_A 1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR--------------- 2026 (2512)
T ss_dssp HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT---------------
T ss_pred cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC---------------
Confidence 236899999999654322 224577788999999999988876542 3899999976431
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCC
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGP 292 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~ 292 (442)
.......|+.+|...+.+++.. +..|++...+-.+.+-+.
T Consensus 2027 -g~~g~~~Y~aaKaal~~l~~~r-r~~Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2027 -GNAGQANYGFANSAMERICEKR-RHDGLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHH-HHTTSCCCEEEECCBCTT
T ss_pred -CCCCcHHHHHHHHHHHHHHHHH-HHCCCcEEEEEccCcCCc
Confidence 1112367999999999999875 445899998888765443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-08 Score=117.75 Aligned_cols=222 Identities=16% Similarity=0.160 Sum_probs=137.2
Q ss_pred CCCCEEEEEcCCch-hHHHHHHHHHhCCCeEEEEeCCCCCC----ccccccccC--CCceeEEecccccc----------
Q 013467 114 RKGLRIVVTGGAGF-VGSHLVDRLIARGDSVIVVDNFFTGR----KENVMHHFG--NPNFELIRHDVVEP---------- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~-lG~~lv~~Ll~~g~~V~~l~r~~~~~----~~~~~~~~~--~~~v~~~~~D~~~~---------- 176 (442)
.++|+++||||+++ ||..+++.|+++|.+|++.+|+.... .+.+...+. ...+..+.+|+.+.
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 56789999999999 99999999999999999999864431 111222222 23567788888653
Q ss_pred ------ccCCCCEEEEecccC----CC---------CcccCChhHHHHHhHHHHHHHHHHHHH----cCC----eEEEee
Q 013467 177 ------LLLEVDQIYHLACPA----SP---------VHYKFNPVKTIKTNVVGTLNMLGLAKR----VGA----RFLLTS 229 (442)
Q Consensus 177 ------~~~~~d~Vih~A~~~----~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~----~g~----r~i~iS 229 (442)
.+.++|++|||||.. .. ..|....+..+++|+.++..+++.+.. .+. .+|..+
T Consensus 2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D 2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence 223589999999961 11 111112334488999998888776643 221 222222
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh--c--CCcEEEEeeCceeCCCCccCCCchHHHH
Q 013467 230 TSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG--A--GVEVRIARIFNTYGPRMCIDDGRVVSNF 305 (442)
Q Consensus 230 S~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~--~--g~~~~iiRp~~v~G~~~~~~~~~~~~~~ 305 (442)
|.. .+ .......|+.||.+.+.+++.++.+ . ++++..+.||++-+........ ....
T Consensus 2294 ss~-~g----------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~-~~~~- 2354 (3089)
T 3zen_D 2294 SPN-RG----------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQND-AIVS- 2354 (3089)
T ss_dssp CSS-TT----------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTT-TTHH-
T ss_pred Ccc-cc----------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccch-hHHH-
Confidence 211 11 1111246999999999999999888 3 6888999999987543211111 1111
Q ss_pred HHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC----c-c--EEecCCC---ccCHHHHHHHHH
Q 013467 306 VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV----G-P--FNLGNPG---EFTMLELAQVVQ 367 (442)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~----g-~--~~i~~~~---~~s~~dl~~~l~ 367 (442)
....... .....+|+|.++++++..... + + ..+.+|- ...+.++...++
T Consensus 2355 ---~~~~~~~----------r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2355 ---AVEEAGV----------TTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp ---HHGGGSC----------BCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred ---HHHhcCC----------CCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 1111111 112679999999998764422 1 2 3344543 368888887653
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9e-09 Score=99.22 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccc---cccccCCCceeEEec-cccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKEN---VMHHFGNPNFELIRH-DVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~-D~~~~~~~~~d~Vih~A 188 (442)
++|+|+|+||+||+|..++..|+.+| ++|+++++... ... +.+......+..+.. +-..+++.++|+|||+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~a 84 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 84 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcC
Confidence 34699999999999999999999998 79999987543 111 111111112222211 12235688999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeec
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS 230 (442)
|... .......++...|+.++.++++.+.+.+. .+|+++|
T Consensus 85 g~~~--~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 85 GVPR--KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp CCCC--CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CcCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 8532 22334567789999999999999999886 6777776
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=81.54 Aligned_cols=92 Identities=21% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 188 (442)
.+++|+|+|+ |++|+.+++.|.+.| ++|++++|+..... .. ...++.++..|+.+. .+.++|+|||++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~-~~----~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALA-VL----NRMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHH-HH----HTTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHH-HH----HhCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 3568999999 999999999999999 89999998532111 11 134566777777553 467899999998
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
+.. ...+++++|.+.|++++.+|+
T Consensus 78 ~~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 78 PFF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp CGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred Cch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 521 135789999999986554543
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.6e-08 Score=93.71 Aligned_cols=165 Identities=11% Similarity=0.062 Sum_probs=100.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeC--CCCCCc---cccccc--cCCCceeEEecc-ccccccCCCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDN--FFTGRK---ENVMHH--FGNPNFELIRHD-VVEPLLLEVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r--~~~~~~---~~~~~~--~~~~~v~~~~~D-~~~~~~~~~d~Vih 186 (442)
|||+||||+||+|++++..|+..|. ++..+++ ...... ..+.+. +....+++...+ ...+++.++|+|||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 5899999999999999999999885 6777776 211000 001111 111244555433 24667899999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHH-HHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDE-GKRT 265 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~-sK~~ 265 (442)
+||... .......+++..|+.+++++++++++.+.++|+++|--+.-. .+-.+.. ....+...+|. +.+.
T Consensus 81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~SNPv~~~------t~~~~k~-~~~p~~rviG~gt~LD 151 (313)
T 1hye_A 81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNPVDVM------TYKALVD-SKFERNQVFGLGTHLD 151 (313)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSSSHHHH------HHHHHHH-HCCCTTSEEECTTHHH
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCcHHHH------HHHHHHh-hCcChhcEEEeCccHH
Confidence 998532 233456678999999999999999987643666665322100 0000000 01122244555 5555
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeC
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYG 291 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G 291 (442)
..++...+++..|++..-++. +++|
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G 176 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIG 176 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEee
Confidence 666666666666776655664 5666
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=94.10 Aligned_cols=111 Identities=15% Similarity=0.057 Sum_probs=77.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeC--CCCCCc---ccccccc-CCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDN--FFTGRK---ENVMHHF-GNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r--~~~~~~---~~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|||+||||+|++|+.++..|+..|+ ++..+++ ...... ..+.+.. ....+.+...| .+++.++|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence 5899999999999999999999885 6777776 321100 0111110 11234444433 56789999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecC
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~ 231 (442)
+... .......+++..|+.+++++++++++.+. .+|+++|-
T Consensus 79 g~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 79 GIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 8532 22334567889999999999999999986 67777763
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=82.23 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=76.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccc---cccccCCCceeEEec-cccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKEN---VMHHFGNPNFELIRH-DVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~-D~~~~~~~~~d~Vih~A~~ 190 (442)
|||.|+||+|++|..++..|+..| ++|.++|+.. .... +.+......+....+ +-.++++.++|+||+++|.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 589999999999999999999888 7999999864 1111 111111112332222 2234468999999999986
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+.+..|+..+..+++.+.+... ++|++|
T Consensus 79 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s 117 (314)
T 1mld_A 79 PR--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (314)
T ss_dssp CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 32 22334556788999999999999988764 777765
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.3e-07 Score=85.82 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--e-----EEEEeCCCC-CCc----cccccccCCCceeEEeccccccccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--S-----VIVVDNFFT-GRK----ENVMHHFGNPNFELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~-----V~~l~r~~~-~~~----~~~~~~~~~~~v~~~~~D~~~~~~~~~d~ 183 (442)
+++|+||||+|+||++++..|+..|. + ++++|+... ... ..+.+......-.+...+-....+.++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 46899999999999999999998775 5 888887421 011 11111100111122222223456889999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC---eEEEeec
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTST 230 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~---r~i~iSS 230 (442)
|||+||.. .....+..+.++.|+..++++++.+++.+. +++.+|-
T Consensus 83 VvitAg~p--rkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 83 AILVGSMP--RRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EEECCSCC--CCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 99999853 223345667889999999999999999873 5776664
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5.4e-06 Score=80.29 Aligned_cols=162 Identities=10% Similarity=-0.013 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHH-hCCCeEEEEeCCCCCCccccc-----------ccc--CCCceeEEecccccc---
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLI-ARGDSVIVVDNFFTGRKENVM-----------HHF--GNPNFELIRHDVVEP--- 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll-~~g~~V~~l~r~~~~~~~~~~-----------~~~--~~~~v~~~~~D~~~~--- 176 (442)
..+|++|||||+.++|...+..|+ +.|..|+++.+..+....... ... .......+.+|+.++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 456799999999999999999998 678999999886554433211 000 134667889998764
Q ss_pred ---------ccCCCCEEEEecccCCCCccc------------------------CC-h-----hHHHHHhHHHHHHH---
Q 013467 177 ---------LLLEVDQIYHLACPASPVHYK------------------------FN-P-----VKTIKTNVVGTLNM--- 214 (442)
Q Consensus 177 ---------~~~~~d~Vih~A~~~~~~~~~------------------------~~-~-----~~~~~~nv~gt~~l--- 214 (442)
.+.++|+|||++|.....+.. .+ . ...-+.++.+|..+
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~ 207 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGG 207 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhh
Confidence 334699999999964211000 00 0 00011223343332
Q ss_pred ------HHHHHHcC-----CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc-CCcEE
Q 013467 215 ------LGLAKRVG-----ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVR 282 (442)
Q Consensus 215 ------l~~a~~~g-----~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~ 282 (442)
+.+....+ .++|.+|+.+.- .. .|......+|.+|...|..++.++.+. ++++.
T Consensus 208 s~~s~w~~al~~a~lla~G~siva~SYiGse----------~t----~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~ 273 (401)
T 4ggo_A 208 EDWERWIKQLSKEGLLEEGCITLAYSYIGPE----------AT----QALYRKGTIGKAKEHLEATAHRLNKENPSIRAF 273 (401)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCG----------GG----HHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred hHHHHHHHHHHhhhcccCCceEEEEeccCcc----------ee----ecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 33333333 478888875421 00 121112468999999999999998876 44555
Q ss_pred EEeeCce
Q 013467 283 IARIFNT 289 (442)
Q Consensus 283 iiRp~~v 289 (442)
++-++-+
T Consensus 274 v~v~~a~ 280 (401)
T 4ggo_A 274 VSVNKGL 280 (401)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 5555443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.4e-06 Score=67.90 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
++++|+|+|+ |.+|+.+++.|.+.|++|++++++.... +. +......++.+|..+. .+.++|+||+++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~-~~----~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 78 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKV-NA----YASYATHAVIANATEENELLSLGIRNFEYVIVAI 78 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHH-HT----TTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HH----HHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence 3557999998 9999999999999999999998753211 11 1112345566665442 156799999987
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecC
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~ 231 (442)
+.. . +.|. .+++.+++.++ ++|..++.
T Consensus 79 ~~~--------~----~~~~----~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 79 GAN--------I----QAST----LTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CSC--------H----HHHH----HHHHHHHHTTCSEEEEECCS
T ss_pred CCc--------h----HHHH----HHHHHHHHcCCCeEEEEeCC
Confidence 520 0 1232 36677778786 66655543
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.6e-06 Score=74.41 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=53.3
Q ss_pred CCCEEEEEcC----------------CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--
Q 013467 115 KGLRIVVTGG----------------AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-- 176 (442)
Q Consensus 115 ~~~~vlVtGa----------------tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-- 176 (442)
.+|+|+|||| +|.+|..+++.|+++|++|+++.|....... ....+++++.+..++
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~------~~~~~~~~~v~s~~em~ 75 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE------PHPNLSIREITNTKDLL 75 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC------CCTTEEEEECCSHHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------CCCCeEEEEHhHHHHHH
Confidence 4679999999 9999999999999999999999986432110 123566666654332
Q ss_pred -----ccCCCCEEEEecccCC
Q 013467 177 -----LLLEVDQIYHLACPAS 192 (442)
Q Consensus 177 -----~~~~~d~Vih~A~~~~ 192 (442)
.+.++|++||+||...
T Consensus 76 ~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 76 IEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp HHHHHHGGGCSEEEECSBCCS
T ss_pred HHHHHhcCCCCEEEEcCcccc
Confidence 3457999999999643
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.1e-07 Score=84.39 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC-CceeEEeccccc-----cccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVE-----PLLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~-----~~~~~~d~Vih~ 187 (442)
.++++++||||+|++|+.++..|+++|++|++++|+... .+.+...+.. .++.++.+|+.+ ..+.++|+|||+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~-~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ 195 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK-AQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA 195 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHH-HHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence 346799999999999999999999999999999985322 1112111110 134455566543 356679999999
Q ss_pred ccc
Q 013467 188 ACP 190 (442)
Q Consensus 188 A~~ 190 (442)
++.
T Consensus 196 ag~ 198 (287)
T 1lu9_A 196 GAI 198 (287)
T ss_dssp CCT
T ss_pred CCc
Confidence 975
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=64.91 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=59.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
+|+|+|+|+ |++|+.+++.|.+.|++|++++|+.... +.... ..++.++.+|..+. .+.++|+||++.+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~-~~~~~---~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDIC-KKASA---EIDALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHH---HCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-HHHHH---hcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 468999996 9999999999999999999998853211 11111 11345566665432 2567999999864
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iS 229 (442)
. . ..| ..+++.+++.+. ++|..+
T Consensus 79 ~---------~----~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 79 K---------E----EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp C---------H----HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred C---------c----hHH----HHHHHHHHHcCCCEEEEEe
Confidence 1 1 123 245667777776 666433
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=81.67 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vih~A~ 189 (442)
++++|+|+| +|++|+++++.|++.|++|++.+|+... .+.+...+ ..+..+..|+.+ ..+.++|+|||+++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~-a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLES-AKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHH-HHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHH-HHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 357899998 7999999999999999999999985321 11121111 235666777654 34568999999997
Q ss_pred cCCCCcccCChhHHHH--Hh-------HHHHHHHHHHHHHcCCeE
Q 013467 190 PASPVHYKFNPVKTIK--TN-------VVGTLNMLGLAKRVGARF 225 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~--~n-------v~gt~~ll~~a~~~g~r~ 225 (442)
...... -....++ .| ...+.+++++|+++|+++
T Consensus 78 ~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~ 119 (450)
T 1ff9_A 78 YTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119 (450)
T ss_dssp --CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred cccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence 532110 0111111 12 236788999999999864
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-05 Score=74.27 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCC--ccccccccC--CCceeEEeccccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGR--KENVMHHFG--NPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~--~~~~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
++|+|+|+|++|.+|+.+++.+.+. |++++++......+ ......... ...+.. ..|+ +..+.++|+||+++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~-~~dl-~~~l~~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSSL-DAVKDDFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESCS-TTTTTSCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee-cCCH-HHHhcCCCEEEEcCC
Confidence 4569999999999999999998854 77887554332211 111111111 112221 2233 345568999998764
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-05 Score=70.38 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=50.5
Q ss_pred CCCCEEEEEcC----------------CchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-
Q 013467 114 RKGLRIVVTGG----------------AGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP- 176 (442)
Q Consensus 114 ~~~~~vlVtGa----------------tG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~- 176 (442)
+.+++|+|||| +|.+|..+++.|+++|++|+++++..... . ...++.++..-.+.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~---~-----~~g~~~~dv~~~~~~ 77 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP---T-----PPFVKRVDVMTALEM 77 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC---C-----CTTEEEEECCSHHHH
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc---c-----CCCCeEEccCcHHHH
Confidence 45789999999 79999999999999999999998753211 0 12344444322221
Q ss_pred ------ccCCCCEEEEecccCC
Q 013467 177 ------LLLEVDQIYHLACPAS 192 (442)
Q Consensus 177 ------~~~~~d~Vih~A~~~~ 192 (442)
.+.++|++||+||...
T Consensus 78 ~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 78 EAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp HHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHhcCCCCEEEECCcccC
Confidence 3456999999999753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.8e-05 Score=64.00 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------cCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------LLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 188 (442)
.+++|+|+|+ |.+|+.+++.|.++|++|++++++.... +.. ....+.++.+|..++. +.++|+||.+.
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~-~~~----~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKI-ELL----EDEGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHH-HHH----HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHH-HHH----HHCCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 3568999997 9999999999999999999999853211 111 1235677888887652 35799999876
Q ss_pred c
Q 013467 189 C 189 (442)
Q Consensus 189 ~ 189 (442)
+
T Consensus 79 ~ 79 (141)
T 3llv_A 79 S 79 (141)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-06 Score=80.16 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=62.3
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCCCCEEE
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLEVDQIY 185 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vi 185 (442)
.+..+.|||+|.|| |++|+.+++.|.+ .++|.+.+++.... +.. ...+..+..|+.+ ..+.++|+||
T Consensus 11 ~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~-~~~-----~~~~~~~~~d~~d~~~l~~~~~~~DvVi 82 (365)
T 3abi_A 11 HIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENL-EKV-----KEFATPLKVDASNFDKLVEVMKEFELVI 82 (365)
T ss_dssp -----CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHH-HHH-----TTTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHH-HHH-----hccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence 34455679999998 9999999988854 58999998853211 111 1234455566544 3567899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
+++++. . ...++++|.++|+++|=+|
T Consensus 83 ~~~p~~--------------~----~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 83 GALPGF--------------L----GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp ECCCGG--------------G----HHHHHHHHHHHTCEEEECC
T ss_pred EecCCc--------------c----cchHHHHHHhcCcceEeee
Confidence 998631 0 1368999999999888766
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.4e-05 Score=79.20 Aligned_cols=94 Identities=15% Similarity=0.283 Sum_probs=65.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccC---CCceeEEecccccc-----ccCC--CC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFG---NPNFELIRHDVVEP-----LLLE--VD 182 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~-----~~~~--~d 182 (442)
|++|+|+|| |++|+.+++.|+++|. +|++.+|+..... .+...+. ..++..+..|+.+. .+.+ +|
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~-~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQ-EIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHH-HHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHH-HHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 468999998 9999999999999983 8999998643222 1221111 13567778887653 3344 89
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
+|||++++.. ...++++|.+.|+.++-++
T Consensus 79 vVin~ag~~~------------------~~~v~~a~l~~g~~vvD~a 107 (405)
T 4ina_A 79 IVLNIALPYQ------------------DLTIMEACLRTGVPYLDTA 107 (405)
T ss_dssp EEEECSCGGG------------------HHHHHHHHHHHTCCEEESS
T ss_pred EEEECCCccc------------------ChHHHHHHHHhCCCEEEec
Confidence 9999987310 1467889999998766544
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=74.99 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCcc---ccccc-cCCCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKE---NVMHH-FGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~---~~~~~-~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.++||.|+|++|++|+.++..|+..| ++|+++|+....... .+.+. +...++.+ ..| ..+++.++|+||.+|
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d-~~~al~dADvVvita 84 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSD-IKEALTDAKYIVSSG 84 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESC-HHHHHTTEEEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCC-HHHHhCCCCEEEEcc
Confidence 45699999999999999999999998 589999874321110 11111 11112222 122 234678999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--e-EEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R-FLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r-~i~iS 229 (442)
|.. ........+.+..|+.....+++.+.+.+. . ++.+|
T Consensus 85 G~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 85 GAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 853 222334667789999999999999988874 3 55665
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0001 Score=70.51 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---ccccc--cCCCceeEEeccccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHH--FGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
.+++|.|+|+ |++|..++..|+..|. +|+++++....... .+.+. +....+.+...| ...+.++|+||.+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~--~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT--YEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc--HHHhCCCCEEEEe
Confidence 4579999996 9999999999999886 89999874321111 11111 111234444333 2478899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
||.. ........+.+..|......+++.+.+... .++.+|
T Consensus 81 ag~p--~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 81 AGAN--QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 9852 222334667789999999999999998874 566665
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00047 Score=58.30 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----c-cCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----L-LLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~-~~~~d~Vih~A 188 (442)
.+++|+|+|+ |.+|..+++.|.+.|++|++++|+.... +... ...++.++.+|..+. . +.++|+||.+.
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~-~~~~---~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAF-HRLN---SEFSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGG-GGSC---TTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-HHHH---hcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 4568999995 9999999999999999999999854322 1111 023445666664331 2 56799999886
Q ss_pred c
Q 013467 189 C 189 (442)
Q Consensus 189 ~ 189 (442)
+
T Consensus 93 ~ 93 (155)
T 2g1u_A 93 N 93 (155)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.68 E-value=7.1e-05 Score=72.38 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-----C-eEEEEeCCC-CCCc-cccccccCC-CceeEEeccccccccCCCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-----D-SVIVVDNFF-TGRK-ENVMHHFGN-PNFELIRHDVVEPLLLEVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-----~-~V~~l~r~~-~~~~-~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vi 185 (442)
+|++|+|.||||++|+.+++.|++++ + +|+.+.+.. .++. ......+.. ..+.+.+.| ...+.++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEEE
Confidence 45799999999999999999999988 4 777775432 1111 111111111 223333333 23456899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
.+.+... +..++..+ +.|+++|-+|+..-
T Consensus 86 ~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 86 LALPHGH------------------SAVLAQQL-SPETLIIDCGADFR 114 (352)
T ss_dssp ECCTTSC------------------CHHHHHHS-CTTSEEEECSSTTT
T ss_pred ECCCCcc------------------hHHHHHHH-hCCCEEEEECCCcc
Confidence 9876321 23567777 77889999998753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=60.77 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=50.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
++|+|+|+ |.+|+.+++.|.+.|++|++++++...+.+.+.... ..++.++.+|..+. .+.++|.||.+.+
T Consensus 4 ~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 47999995 999999999999999999999985321111222111 23577888887654 2668999998763
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0003 Score=66.80 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=75.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC-C--CeEEEEeCCCCCCccccccccC-CCceeEEe--ccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR-G--DSVIVVDNFFTGRKENVMHHFG-NPNFELIR--HDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~-g--~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~--~D~~~~~~~~~d~Vih~A~~ 190 (442)
|||.|+||+|.+|..++..|..+ + .+++++++.. .......+... .....+.. ++-....+.++|+||-+||.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 58999999999999999998875 5 5899998854 11111111111 11223321 22234578899999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. ........+.++.|......+.+.+.+... .++.+|
T Consensus 80 ~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 80 A--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp S--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 3 223345778899999999999999988764 666665
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=70.17 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=60.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEe-CCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVD-NFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
+|+|+|.||||++|+.+++.|.+++| +++.+. +...++.-. +....+.+.+.|. ..+.++|+||.+.+.
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~~g~~i~~~~~~~--~~~~~~DvV~~a~g~- 78 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----FAESSLRVGDVDS--FDFSSVGLAFFAAAA- 78 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----ETTEEEECEEGGG--CCGGGCSEEEECSCH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----cCCcceEEecCCH--HHhcCCCEEEEcCCc-
Confidence 36899999999999999999997765 455554 222211111 1112233333332 235689999988752
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
..+..++..+.++|+++|.+|+..
T Consensus 79 -----------------~~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 79 -----------------EVSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEETTCTT
T ss_pred -----------------HHHHHHHHHHHHCCCEEEEeCCCC
Confidence 124567778888899888888765
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00067 Score=64.72 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc---cccccc--CCCceeEE-eccccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE---NVMHHF--GNPNFELI-RHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~-~~D~~~~~~~~~d~Vih~ 187 (442)
++++|.|+|+ |.+|..++..|+..|. +|+++++....... .+.+.. ......+. ..| .+++.++|+||.+
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVIi~ 80 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVIVT 80 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEEEc
Confidence 3579999995 9999999999999887 99999986432111 111110 01123333 233 3578899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+|.. ........+.+..|......+++.+.+... .++.+|
T Consensus 81 ag~p--~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 81 AGVP--RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCcC--CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 9853 222334667788999999999999988774 666665
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0003 Score=67.23 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc---cccccc--CCCceeEE-eccccccccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE---NVMHHF--GNPNFELI-RHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~-~~D~~~~~~~~~d~Vih 186 (442)
+++++|.|+|+ |.+|..++..|+..|+ +|+++++....... .+.+.. ......+. ..|. +++.++|+||.
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVIi 81 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVIV 81 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEEE
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEEE
Confidence 34579999998 9999999999999998 99999986432211 111110 01122333 2343 67899999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
++|.. ........+.+..|......+++.+.+... .++.+|-
T Consensus 82 aag~p--~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 82 TAGVP--RKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CCSCC--CC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred ccCcC--CCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 99853 222234556778899999999999988764 6666663
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00081 Score=64.14 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccc---ccc-CCCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVM---HHF-GNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~---~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+++||.|+|+ |++|..++..|+..|. +|+++|+.......... +.. -...+.+...| .+++.++|+||.++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~--~~a~~~aDvVii~~ 82 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTA 82 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC--HHHhCCCCEEEEcC
Confidence 3568999998 9999999999999987 89999986432221111 110 01233443322 45689999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEe
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 228 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~i 228 (442)
+... .......+....|+.....+++.+.+... .+|.+
T Consensus 83 g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 83 GANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp CC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 8532 22233456778999999999999988764 45554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=73.25 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCCCCEEEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLEVDQIYH 186 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vih 186 (442)
..++++|+|+|+ |++|+.++..|++. |++|++.+|+.... +.+... .++..+..|+.+ ..+.++|+|||
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~---~~~~~~~~D~~d~~~l~~~l~~~DvVIn 94 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANA-QALAKP---SGSKAISLDVTDDSALDKVLADNDVVIS 94 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGG---GTCEEEECCTTCHHHHHHHHHTSSEEEE
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHh---cCCcEEEEecCCHHHHHHHHcCCCEEEE
Confidence 345678999997 99999999999998 78999999853221 112111 234555566543 34568999999
Q ss_pred eccc
Q 013467 187 LACP 190 (442)
Q Consensus 187 ~A~~ 190 (442)
+++.
T Consensus 95 ~tp~ 98 (467)
T 2axq_A 95 LIPY 98 (467)
T ss_dssp CSCG
T ss_pred CCch
Confidence 9875
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00046 Score=65.00 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=76.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCc---ccccccc--CCCceeEEe-ccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRK---ENVMHHF--GNPNFELIR-HDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~---~~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A 188 (442)
|+|.|+|+ |.+|..++..|+..|+ +|.++++...... ..+.+.. -.....+.- .| .+++.++|+||.++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEECC
Confidence 68999998 9999999999999987 8999998543211 0111111 112233332 34 66889999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
|.. ........+.+..|..-.+.+++.+.+.+. .++.+|
T Consensus 78 g~~--~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 78 GLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp CCC--CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 853 222334667888999999999999998874 677666
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=68.37 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---ccccccC-CCceeEEeccccccccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHHFG-NPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
..+++|.|+|+ |.+|..++..|+..|. +|+++|+....... .+.+... ...+.+...| .+.+.++|+||++
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi~ 83 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEEC
Confidence 34679999996 9999999999999886 89999874321110 1111110 1234444333 3568899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
||.. ........+.++.|..-...+++.+.+... .++.+|
T Consensus 84 ag~~--~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 84 AGAP--QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCCC------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCC--CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 9853 222234556778899999999999988774 566655
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00054 Score=65.87 Aligned_cols=166 Identities=13% Similarity=0.032 Sum_probs=97.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCCC-----ccccccccCCCceeEEeccccccccCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTGR-----KENVMHHFGNPNFELIRHDVVEPLLLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~~-----~~~~~~~~~~~~v~~~~~D~~~~~~~~~d 182 (442)
++.||.|+||+|.||+.++-.|..... ++..+|...... ...+.+.........+..+-..+++.++|
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~ad 102 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVA 102 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCC
Confidence 345899999999999999988876532 677877632111 01111211111223333333455789999
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC---CeEEEeecC---ccc--cCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTS---EVY--GDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g---~r~i~iSS~---~vy--~~~~~~~~~E~~~~~~~~~~ 254 (442)
+||-+||.. ........+.++.|..-.+.+.+...+.. +.++.+|-- .+| -..... -+.
T Consensus 103 vVvi~aG~p--rkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g-----------~~~ 169 (345)
T 4h7p_A 103 IAIMCGAFP--RKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQG-----------KLN 169 (345)
T ss_dssp EEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTT-----------CSC
T ss_pred EEEECCCCC--CCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccC-----------CCC
Confidence 999999853 33345678899999999999999988753 356666631 111 000000 011
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCC
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~ 293 (442)
+...-+.+-+..-++-...+++.|++..-|+-..|+|..
T Consensus 170 ~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H 208 (345)
T 4h7p_A 170 PRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH 208 (345)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS
T ss_pred cceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC
Confidence 112223333444455445556667877777766677753
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00033 Score=66.68 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC-CCCccc----cccc--cCCCceeEEeccccccccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF-TGRKEN----VMHH--FGNPNFELIRHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~-~~~~~~----~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih 186 (442)
++++|.|+|+ |.+|..++..|+..|+ +|+++++.. ..+.+. +.+. +......+...+ ....+.++|+||.
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~-d~~a~~~aDvVIi 84 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS-DYADTADSDVVVI 84 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES-CGGGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC-CHHHhCCCCEEEE
Confidence 4568999996 9999999999999999 999999852 111111 1111 000112222111 1357889999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
++|.. ........+.+..|....+.+.+.+.+.+. .++.+|
T Consensus 85 aag~p--~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 85 TAGIA--RKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred eCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 99853 222345677889999999999999988764 666666
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00068 Score=64.45 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=69.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccC-----CCceeEEe-ccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFG-----NPNFELIR-HDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~-~D~~~~~~~~~d~Vih~A~ 189 (442)
|+|.|+|| |.+|..++..|+..|+ +|+++|++.........+... .....+.. .|. +++.++|+||.+++
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a~g 79 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTSG 79 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEcCC
Confidence 68999998 9999999999999997 888888753211111111101 11233333 443 56889999999997
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS 230 (442)
... .......+....|+.....+.+.+.+.+. .+|.+.|
T Consensus 80 ~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 80 APR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 532 11222345567888888999999888765 4444444
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00083 Score=65.08 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeC-CCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDN-FFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
+++|.|.||||++|+.|++.|.+++| ++..+.- ...++.-. +....+.+.+ +....+.++|+||-+.+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~----~~~~~~~~~~--~~~~~~~~~Dvvf~a~~~- 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK----FKDQDITIEE--TTETAFEGVDIALFSAGS- 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE----ETTEEEEEEE--CCTTTTTTCSEEEECSCH-
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce----ecCCCceEee--CCHHHhcCCCEEEECCCh-
Confidence 35899999999999999999988866 3444432 11111111 1112223332 333446789999988752
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
..+...+..+.+.|+++|-.|+..-+
T Consensus 75 -----------------~~s~~~a~~~~~~G~~vIDlSa~~R~ 100 (366)
T 3pwk_A 75 -----------------STSAKYAPYAVKAGVVVVDNTSYFRQ 100 (366)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred -----------------HhHHHHHHHHHHCCCEEEEcCCcccc
Confidence 12345566667789999999986533
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00045 Score=66.70 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=60.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc---cccCC-CceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM---HHFGN-PNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~---~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+++|.|.||||++|+.+++.|.++++ +++.+.+... ...... ..+.. ..+.+.+.| . +.++|+||.+.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~-~g~~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRF-AGEPVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTT-TTSBGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchh-hCchhHHhCchhcCcccccccchh---H-hcCCCEEEEcCCc
Confidence 46899999999999999999998865 7777765322 111111 11111 122222222 2 4789999998752
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
. .+..++..+.++|+++|-.|+..
T Consensus 79 ~------------------~s~~~a~~~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 G------------------VFAREFDRYSALAPVLVDLSADF 102 (345)
T ss_dssp T------------------HHHHTHHHHHTTCSEEEECSSTT
T ss_pred H------------------HHHHHHHHHHHCCCEEEEcCccc
Confidence 1 13456677778899999999854
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00046 Score=64.87 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=74.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCc---ccccccc--CCCceeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRK---ENVMHHF--GNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~---~~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
|||.|+|| |.||+.++..|+.++. ++..+|....... ..+.+.. -.....+...+ .-+.+.++|+||-.||
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~-d~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA-DYSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES-CGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC-CHHHhCCCCEEEEecC
Confidence 68999995 9999999999988874 8999887431111 1111110 01122222221 1246889999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
.. ........+.++.|..-.+.+.+.+.+.+. .++.+|-
T Consensus 79 ~p--rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 79 LA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CC--CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CC--CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 53 333456788999999999999999998874 5666663
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00093 Score=64.13 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=72.6
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc---cccccc--CCCceeEEe-ccccccccCCCCEE
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE---NVMHHF--GNPNFELIR-HDVVEPLLLEVDQI 184 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~V 184 (442)
+..++|+|.|+|| |.+|..++..|+..|+ +|++++++...... .+.+.. ......+.- .|. ++++.++|+|
T Consensus 5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~ea~~~aDiV 82 (331)
T 1pzg_A 5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSY-EAALTGADCV 82 (331)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSH-HHHHTTCSEE
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCH-HHHhCCCCEE
Confidence 3344579999998 9999999999999998 99999886432211 011110 011222222 343 3368899999
Q ss_pred EEecccCCCCcccC-----ChhHHHHHhHHHHHHHHHHHHHcCC--eEEEe
Q 013467 185 YHLACPASPVHYKF-----NPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 228 (442)
Q Consensus 185 ih~A~~~~~~~~~~-----~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~i 228 (442)
|.+++... .... ...+....|....+.+++.+.+... .+|.+
T Consensus 83 i~a~g~p~--~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~ 131 (331)
T 1pzg_A 83 IVTAGLTK--VPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVV 131 (331)
T ss_dssp EECCSCSS--CTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred EEccCCCC--CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 99997432 2222 3455677888888889988888754 44443
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0016 Score=62.48 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=61.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC---CeEEEEeCC-CCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG---DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g---~~V~~l~r~-~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
+++|.|.||+|++|+.+++.|.+++ .+|+.+... ..++.-. +....+.+.+.| ...+.++|+||-+.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~----~~~~~i~~~~~~--~~~~~~vDvVf~a~g~- 75 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR----FNGKTVRVQNVE--EFDWSQVHIALFSAGG- 75 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE----ETTEEEEEEEGG--GCCGGGCSEEEECSCH-
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee----ecCceeEEecCC--hHHhcCCCEEEECCCc-
Confidence 5689999999999999999999984 366766532 1111111 222234443333 2344689999988752
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
..+...+..+.+.|+++|-.|+..
T Consensus 76 -----------------~~s~~~a~~~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 76 -----------------ELSAKWAPIAAEAGVVVIDNTSHF 99 (336)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred -----------------hHHHHHHHHHHHcCCEEEEcCCcc
Confidence 124456777778899999988874
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00075 Score=64.58 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---ccccc--cCCCceeEE-eccccccccCCCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHH--FGNPNFELI-RHDVVEPLLLEVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~--~~~~~v~~~-~~D~~~~~~~~~d~Vi 185 (442)
..+++|.|+|+ |.+|..++..|+..|. +|+++|+....... .+.+. +. ....++ ..|. +.+.++|+||
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-~~~~i~~~~d~--~~~~~aDiVv 92 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL-KTPKIVSSKDY--SVTANSKLVI 92 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC-SCCEEEECSSG--GGGTTEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc-CCCeEEEcCCH--HHhCCCCEEE
Confidence 34579999997 9999999999999986 89999875321111 11111 11 112233 2333 3588999999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.+||.. ........+.++.|..-...+.+.+.+... .++.+|
T Consensus 93 i~aG~~--~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 93 ITAGAR--QQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp ECCSCC--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EccCCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999853 223345677899999999999999988863 666666
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00063 Score=61.06 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=49.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
|+|+|+|+ |.+|+++++.|.++|++|++++++..... .+. ...++.++.+|..+. .+.++|+||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~-~l~---~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCE-EFA---KKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHH---HHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH-HHH---HHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 57999996 99999999999999999999997532111 111 113567788887664 2567999997653
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00048 Score=64.03 Aligned_cols=94 Identities=20% Similarity=0.347 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEE-eCCCCCCc-cccccccCC-CceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVV-DNFFTGRK-ENVMHHFGN-PNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l-~r~~~~~~-~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
++|+||.|+|++|.+|+.+++.+.+. +.+++.. +|...... ......... .++.+ .+-.++.+.++|+||.+..
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v--~~dl~~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL--TDDIERVCAEADYLIDFTL 82 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC--BCCHHHHHHHCSEEEECSC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCcee--cCCHHHHhcCCCEEEEcCC
Confidence 34679999999999999999999876 4677764 55422111 111111110 12211 1222334557999998752
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEE
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~ 227 (442)
-..+...++.|.++|+.+|.
T Consensus 83 ------------------p~a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 83 ------------------PEGTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp ------------------HHHHHHHHHHHHHHTCEEEE
T ss_pred ------------------HHHHHHHHHHHHHcCCCEEE
Confidence 12345677888888887664
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0009 Score=65.17 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEe--CCCCCCccc-cccccCC-------CceeEEecccc
Q 013467 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVD--NFFTGRKEN-VMHHFGN-------PNFELIRHDVV 174 (442)
Q Consensus 106 ~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~--r~~~~~~~~-~~~~~~~-------~~v~~~~~D~~ 174 (442)
+.+|....+++++|.|.||||++|+.+++.|.++.+ ++..+. ++..++.-. ....+.. ....+.+.|..
T Consensus 9 ~~~~~~~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~ 88 (381)
T 3hsk_A 9 GLVPRGSHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPE 88 (381)
T ss_dssp ---------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSC
T ss_pred ccccccccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchh
Confidence 344444455667999999999999999998877753 676553 322222210 0011100 12223333321
Q ss_pred ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 175 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
+ .+.++|+||-+.+. ..+..++..+.+.|+++|=.|+..-+
T Consensus 89 ~-~~~~~Dvvf~alp~------------------~~s~~~~~~~~~~G~~VIDlSa~fR~ 129 (381)
T 3hsk_A 89 G-NFLECDVVFSGLDA------------------DVAGDIEKSFVEAGLAVVSNAKNYRR 129 (381)
T ss_dssp T-TGGGCSEEEECCCH------------------HHHHHHHHHHHHTTCEEEECCSTTTT
T ss_pred h-hcccCCEEEECCCh------------------hHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 1 45789999987641 12345566667889999999987644
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00091 Score=64.11 Aligned_cols=95 Identities=21% Similarity=0.166 Sum_probs=57.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCcc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHY 196 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~ 196 (442)
|+|.|.||+|++|+.+++.|.+++|.+..+......+.....-.+....+.+.+.|.. . + ++|+||-+.|.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~-~-~-~~DvV~~a~g~------ 71 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEG-P-L-PVDLVLASAGG------ 71 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSS-C-C-CCSEEEECSHH------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChh-h-c-CCCEEEECCCc------
Confidence 4799999999999999999998877443222100001110000112224555555533 2 4 89999988752
Q ss_pred cCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 197 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 197 ~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
..+...+....+.|+++|-.|+..
T Consensus 72 ------------~~s~~~a~~~~~~G~~vId~s~~~ 95 (331)
T 2yv3_A 72 ------------GISRAKALVWAEGGALVVDNSSAW 95 (331)
T ss_dssp ------------HHHHHHHHHHHHTTCEEEECSSSS
T ss_pred ------------cchHHHHHHHHHCCCEEEECCCcc
Confidence 123345566667788999999874
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=63.51 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=60.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCC----------CceeEEeccccccccC-CCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGN----------PNFELIRHDVVEPLLL-EVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~----------~~v~~~~~D~~~~~~~-~~d~V 184 (442)
++|.|.||+|++|+.+++.|.+++ .+|+.+.++.....+........ ..+.+...|.. .++. ++|+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPK-HEEFEDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTT-SGGGTTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHH-HHhcCCCCEE
Confidence 589999999999999999998875 48888865322121111110000 11222223332 2335 89999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
|-+.+. ..+..++..+.+.|+++|-.|+..-
T Consensus 88 ~~atp~------------------~~~~~~a~~~~~aG~~VId~s~~~R 118 (354)
T 1ys4_A 88 FSALPS------------------DLAKKFEPEFAKEGKLIFSNASAYR 118 (354)
T ss_dssp EECCCH------------------HHHHHHHHHHHHTTCEEEECCSTTT
T ss_pred EECCCc------------------hHHHHHHHHHHHCCCEEEECCchhc
Confidence 987642 1233466677788989888887643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=62.76 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---cccccc-CCCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHHF-GNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+.+||.|+|| |.+|..++..|+..+. +|.++|+....... .+.+.. ....+.+.. | ..+++.++|+||..+
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEcC
Confidence 3469999998 9999999999988875 89999884321111 011110 012344443 3 345688999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+... .......+.+..|+.....+++.+.+... .+|.+|
T Consensus 85 g~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 85 GAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 8532 22234556778899999999998888764 666664
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0025 Score=61.10 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCC--CCccccc---cccCC-CceeEEec-cccccccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFT--GRKENVM---HHFGN-PNFELIRH-DVVEPLLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~--~~~~~~~---~~~~~-~~v~~~~~-D~~~~~~~~~d~Vih 186 (442)
.|++|.|.||||++|+.+++.|.++. .++..+..... ...+.+. ..+.. ..+.+.+. |.. ....++|+||-
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~-~~~~~~Dvvf~ 81 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDIS-EFSPGVDVVFL 81 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGG-GTCTTCSEEEE
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHH-HHhcCCCEEEE
Confidence 35799999999999999999999864 57877754331 1111111 11221 13333332 222 22278999997
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
+.+. ..+..++..+.+.|+++|-.|+..
T Consensus 82 a~p~------------------~~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 82 ATAH------------------EVSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSCH------------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCCh------------------HHHHHHHHHHHHCCCEEEEcCCcc
Confidence 7641 123456666678899999999864
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=62.30 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=72.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---cccccc--CCCceeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHHF--GNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
|+|.|+|+ |.+|..++..|+..|. +|+++++....... .+.+.. ......+...| ....+.++|+||.+||
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~-~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN-DYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES-SSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC-CHHHhCCCCEEEECCC
Confidence 68999996 9999999999999886 89999986432111 111110 11123333222 2457889999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. ........+.+..|..-...+.+.+.+... .++.+|
T Consensus 79 ~~--~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 79 LP--RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CC--CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 53 222334667888999999999999988874 666666
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0015 Score=63.16 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=60.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccC----------CCceeEEeccccccccCCCCEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFG----------NPNFELIRHDVVEPLLLEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~----------~~~v~~~~~D~~~~~~~~~d~V 184 (442)
+++|.|.||+|++|+.+++.|.++.. +|+.+..+.....+....... ...+.+.+.|. ..+.++|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vDvV 81 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVDVV 81 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCSEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCCEE
Confidence 46899999999999999999987753 787775211111111110000 01223333332 234689999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
|-+.+. ..+..++..+.++|+++|-.|+..-
T Consensus 82 f~atp~------------------~~s~~~a~~~~~aG~~VId~s~~~R 112 (350)
T 2ep5_A 82 LSALPN------------------ELAESIELELVKNGKIVVSNASPFR 112 (350)
T ss_dssp EECCCH------------------HHHHHHHHHHHHTTCEEEECSSTTT
T ss_pred EECCCh------------------HHHHHHHHHHHHCCCEEEECCcccc
Confidence 977641 1244577788888999888887643
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00047 Score=64.24 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC-CceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.++++++|+|+ |.+|+.++..|++.|.+|++.+|+... .+.+...+.. ..++..+.+.... .++|+|||+++.
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~-~~~la~~~~~~~~~~~~~~~~~~~--~~~DivVn~t~~ 190 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSR-AEELAKLFAHTGSIQALSMDELEG--HEFDLIINATSS 190 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHH-HHHHHHHTGGGSSEEECCSGGGTT--CCCSEEEECCSC
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHH-HHHHHHHhhccCCeeEecHHHhcc--CCCCEEEECCCC
Confidence 35679999998 889999999999999999999885322 1222221111 1222222111111 479999999975
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.002 Score=61.18 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=73.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccC----CCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|||.|+|| |.+|..++..|+..+ .+|.++|+..........+... ...+.+...| .+++.++|+||.+++.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~--~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGS--YGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECC--HHHhCCCCEEEECCCC
Confidence 58999998 999999999999887 5899999853211110111101 1234444432 5578999999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+....|......+++.+.+... .+|.+|
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 78 AQ--RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 32 22334556778899999999999888763 666664
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=61.63 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=65.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccC----CCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|+|.|+|| |.+|..++..|+..|+ +|++++++............. .....+...| .+++.++|+||.+++.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCCC
Confidence 58999998 9999999999999998 999999863211110111000 0123333223 3468899999999874
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+.+..|+.....+++.+.+... .+|.+|
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 78 NQ--KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CC--CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 22 11222345667888888899988887654 455444
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00012 Score=64.59 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+++|+|+||+|.||..+++.+...|.+|++++|+
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~ 72 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS 72 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 4589999999999999999999999999999885
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0043 Score=58.85 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=70.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeCCCCCCcccccccc-C-----CCceeEEe-ccccccccCCCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRKENVMHHF-G-----NPNFELIR-HDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~-~-----~~~v~~~~-~D~~~~~~~~~d~Vih~ 187 (442)
|+|.|+|+ |.+|..++..|.+. |++|++++++..... .....+ . .....+.. .|. + .+.++|+||-+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~-~~~~~l~~~~~~~~~~~~i~~t~d~-~-~l~~aDvViia 76 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQ-GKALDMYESGPVGLFDTKVTGSNDY-A-DTANSDIVIIT 76 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHH-HHHHHHHTTHHHHTCCCEEEEESCG-G-GGTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHH-HHHHhHHhhhhcccCCcEEEECCCH-H-HHCCCCEEEEe
Confidence 58999998 99999999999985 799999998643221 111000 0 11222322 343 2 38899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
++.. ........+.+..|+.....+++.+.+... .+|.+|
T Consensus 77 v~~p--~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 77 AGLP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 8732 222223556777888888899988887753 556554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0023 Score=61.01 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCcc---ccccc--cCCCceeEEeccccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKE---NVMHH--FGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~---~~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
++++|.|+|| |.+|..++..|+..| .+|..+|+....... .+.+. +....+.+.. | ..+++.++|+||.+
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~-~~~a~~~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G-EYSDCHDADLVVIC 81 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C-CGGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C-CHHHhCCCCEEEEC
Confidence 4569999998 999999999999888 489998875321111 11111 1112334443 3 24568999999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
++... .......+.+..|......+++.+.+... .+|.+|
T Consensus 82 ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 82 AGAAQ--KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 98532 22334556778899999999999888864 555544
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0053 Score=58.94 Aligned_cols=93 Identities=20% Similarity=0.096 Sum_probs=59.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeC-CCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDN-FFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
++|.|.||||++|+.|++.|.++.+ ++..+.- ...++.-. +.. .+....+.....+.++|+||-+.+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~----~~~--~~~~~~~~~~~~~~~~Dvvf~a~~~-- 73 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA----FRG--QEIEVEDAETADPSGLDIALFSAGS-- 73 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE----ETT--EEEEEEETTTSCCTTCSEEEECSCH--
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee----ecC--CceEEEeCCHHHhccCCEEEECCCh--
Confidence 5899999999999999999988854 4555542 22121111 111 2232223334456789999988752
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
..+...+..+.+.|+++|=.|+..-
T Consensus 74 ----------------~~s~~~a~~~~~~G~~vID~Sa~~R 98 (344)
T 3tz6_A 74 ----------------AMSKVQAPRFAAAGVTVIDNSSAWR 98 (344)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEECSSTTT
T ss_pred ----------------HHHHHHHHHHHhCCCEEEECCCccc
Confidence 1234556666778999999998653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0051 Score=58.69 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc---cccccc--CCCceeEEe-ccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE---NVMHHF--GNPNFELIR-HDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A 188 (442)
+++|.|+|| |.+|..++..|+..|+ +|+++|++...... .+.+.. ......+.. .|. +++.++|+||.++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~--~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY--DDLAGADVVIVTA 80 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG--GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH--HHhCCCCEEEEeC
Confidence 468999998 9999999999999998 88888875432111 111100 011223333 444 5688999999999
Q ss_pred ccCCCCcccCC-----hhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFN-----PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~-----~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+... ..... ..+....|+.-...+.+.+.+... .+|.+|
T Consensus 81 g~p~--k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 81 GFTK--APGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp SCSS--CTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCCC--CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7422 11112 345667788888888888777653 555554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00055 Score=59.59 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cc--cCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PL--LLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~--~~~~d~Vih 186 (442)
.+++|+|+| .|.+|..+++.|.+. |++|++++++.... +.. ...++.++.+|..+ .+ +.++|+||.
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~-~~~----~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAA-QQH----RSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHH-HHH----HHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHH-HHH----HHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 356899999 599999999999999 99999999853221 111 11245566666543 23 567999998
Q ss_pred ecc
Q 013467 187 LAC 189 (442)
Q Consensus 187 ~A~ 189 (442)
+.+
T Consensus 112 ~~~ 114 (183)
T 3c85_A 112 AMP 114 (183)
T ss_dssp CCS
T ss_pred eCC
Confidence 753
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=61.51 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---ccccccC-CCceeEE-eccccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHHFG-NPNFELI-RHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~~~-~~~v~~~-~~D~~~~~~~~~d~Vih~ 187 (442)
..++|.|+|+ |.+|..++..|+..|. +|+++|+....... .+.+... .....+. ..|.. .+.++|+||-+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIit 96 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVIT 96 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEe
Confidence 4569999998 9999999999999886 89999874321111 1111100 1122233 23443 38899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
||.. ........+.+..|..-...+++.+.+.+. .++.+|
T Consensus 97 aG~p--~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 97 AGAR--QQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CSCC--CCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCC--CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 9853 222334566778999999999999888764 566666
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0017 Score=61.81 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=69.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---cccccc-CCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHHF-GNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+||.|+|| |.+|..++..|+..+. +|.++|+....... .+.+.. ....+.+.. | ..+++.++|+||.+++.
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITAGA 82 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence 69999998 9999999999998875 89999884321111 111110 012344443 3 34568999999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+.+..|......+++.+.+... .+|.+|
T Consensus 83 ~~--~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 83 PQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 32 11223345677899999999999988864 566654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00023 Score=63.54 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=45.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC----CCceeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
|+|+|+||+|++|+.+++.|.+.|++|++++|+.... +....... ...+. . +..++.+.++|+||++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~D~Vi~~~~ 73 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKA-EAKAAEYRRIAGDASIT--G-MKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHH-HHHHHHHHHHHSSCCEE--E-EEHHHHHHHCSEEEECSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhccccccCCCC--h-hhHHHHHhcCCEEEEeCC
Confidence 5899999999999999999999999999999853221 11111100 01122 1 222334567999999863
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0015 Score=63.25 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc---cccCCCc-eeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM---HHFGNPN-FELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~---~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+++|.|.||+|++|+.+++.|.+++. +|+.+...... ..... ..+.... .++...+ +..+.++|+||.+.+.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~-g~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKA-GQSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCLPH 92 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTT-TSCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECCCT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhc-CCCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcCCc
Confidence 46899999999999999999998865 78877653211 11111 1111100 1111112 3344689999998753
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCc
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~ 232 (442)
.. +...+..+ +.|+++|-.|+..
T Consensus 93 ~~------------------s~~~a~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 93 GT------------------TQEIIKEL-PTALKIVDLSADF 115 (359)
T ss_dssp TT------------------HHHHHHTS-CTTCEEEECSSTT
T ss_pred hh------------------HHHHHHHH-hCCCEEEECCccc
Confidence 11 23456666 7788999888854
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0063 Score=58.91 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--e---EEEEeCCCCCCcc-------ccccccCC--CceeEEeccccccccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--S---VIVVDNFFTGRKE-------NVMHHFGN--PNFELIRHDVVEPLLLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~---V~~l~r~~~~~~~-------~~~~~~~~--~~v~~~~~D~~~~~~~~ 180 (442)
.++||.|+||+|.||.+++-.|+..+. + |.+.+.......+ .+.+.... ..+.+ .+-....+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~~~~y~~~~d 108 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--GIDPYEVFED 108 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--ESCHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--ecCCHHHhCC
Confidence 456899999999999999999998763 2 6654433222111 11111100 12222 2223457889
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-C--CeEEEeec
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 230 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g--~r~i~iSS 230 (442)
+|+||-+||.. ........+.++.|..-.+.+.+.+.+. + +.++.+|-
T Consensus 109 aDvVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 109 VDWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp CSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCEEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999853 2233457788999999999999999875 4 46777774
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0045 Score=51.18 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=49.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
+|+|.|. |.+|+.+++.|.+.|++|++++++.... +.. ...++.++.+|..+. .+.++|.||-+.+
T Consensus 9 ~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~-~~~----~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 9 HALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRV-DEL----RERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHH-HHH----HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHH-HHH----HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 7999995 9999999999999999999999853211 111 124667888887664 2356899997653
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=56.49 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=69.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc---cccccc--CCCceeEEe-ccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE---NVMHHF--GNPNFELIR-HDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A~ 189 (442)
++|.|+|| |.+|..++..|+..|+ +|++++++...... .+.+.. ......+.. .|. +++.++|+||-+++
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~--~al~~aD~VI~avg 91 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY--EYLQNSDVVIITAG 91 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH--HHHCCCCEEEEcCC
Confidence 58999998 9999999999999998 99999986432221 111110 001222222 444 57889999999987
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
... .......+....|+.-...+++.+.+... .+|.+|
T Consensus 92 ~p~--k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 92 VPR--KPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp CCC--CTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCC--CCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 422 11122334566788888888888777653 455554
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0079 Score=57.13 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc-c--cccccC-CCceeEEec-cccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE-N--VMHHFG-NPNFELIRH-DVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~-~--~~~~~~-~~~v~~~~~-D~~~~~~~~~d~Vih~ 187 (442)
++|+|.|+|+ |.+|..++..|.+.|+ +|++++|+...... . +.+... .....+... | ...+.++|+||-+
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~aD~Vii~ 82 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD--PEICRDADMVVIT 82 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC--HHHhCCCCEEEEC
Confidence 4579999997 9999999999999998 99999985321110 0 111110 012233222 2 2457789999998
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 223 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~ 223 (442)
++... .......+....|+.....+++..++.+.
T Consensus 83 v~~~~--~~g~~r~~~~~~n~~~~~~~~~~i~~~~~ 116 (319)
T 1lld_A 83 AGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAP 116 (319)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 86422 12233456677888888888888776554
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.014 Score=55.03 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcccccc--ccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMH--HFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.+++|.|+|| |.+|..++..|+..|. +|+.+|+... ......+ .....++... .|. ..+.++|+||.++|.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t-~d~--~~l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNLPNVEIS-KDL--SASAHSKVVIFTVNS 87 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTCTTEEEE-SCG--GGGTTCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEe-CCH--HHHCCCCEEEEcCCC
Confidence 3468999996 9999999999999998 9999998653 2211111 1222344443 454 568899999999986
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. ......+....|+.-...+++.+.+... .+|.+|
T Consensus 88 ~~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 88 LG---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 32 1234556778888888899988887653 555555
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00054 Score=65.75 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+++|+|+||+|.||..+++.+...|.+|++++++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457999999999999999999999999999998753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00065 Score=66.27 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeE--EeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL--IRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~--~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++|+|+|+ |.+|..+++.|...|++|++++|+.... +.....+.. .+.. .+.+..++.+.++|+||++++.
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~-~~~~~~~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRL-QYLDDVFGG-RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHTTT-SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHHhcCc-eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 45679999998 9999999999999999999999854221 111111111 1111 1122223445679999999874
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0086 Score=56.96 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=69.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccc---cc--cCCCceeEEe-ccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVM---HH--FGNPNFELIR-HDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~---~~--~~~~~v~~~~-~D~~~~~~~~~d~Vih~A 188 (442)
+|+|.|+|+ |.+|..++..|++.|+ +|++++++......... +. .......+.. .|. ..+.++|+||-++
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~--~a~~~aDiVi~av 80 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY--ADISGSDVVIITA 80 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH--HHhCCCCEEEEeC
Confidence 468999997 9999999999999998 99999986432221100 00 0001112222 343 4678999999998
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeec
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 230 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS 230 (442)
+... .......+....|......+++.+.+... .+|.+|.
T Consensus 81 g~p~--~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 81 SIPG--RPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCSS--CCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCC--CCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7532 22223344556777777788887776643 4555553
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0019 Score=60.08 Aligned_cols=72 Identities=13% Similarity=0.287 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC-CceeEEecccccccc-CCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVEPLL-LEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~-~~~d~Vih~A~~ 190 (442)
.++++|+|+|+ |.+|+.++..|++.|.+|++.+|+.+. .+.+...+.. ..++..+.+ ... .++|+|||+.+.
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~-a~~l~~~~~~~~~~~~~~~~---~~~~~~~DivIn~t~~ 190 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSK-TKELAERFQPYGNIQAVSMD---SIPLQTYDLVINATSA 190 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHH-HHHHHHHHGGGSCEEEEEGG---GCCCSCCSEEEECCCC
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHHccccCCeEEeeHH---HhccCCCCEEEECCCC
Confidence 45679999997 889999999999999999999986422 1222221111 123332221 111 379999999875
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0058 Score=58.24 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=69.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcccc---ccccC-CCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENV---MHHFG-NPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~---~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|+|.|+|+ |.+|..++..|++.|+ +|++++++........ .+... .....+...| ...+.++|+||-+++.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccCC
Confidence 58999998 9999999999999998 9999998532111100 00000 0122333234 3467899999998874
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+....|+.....+++.+.+... .+|.+|
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 22 11123456677888888888888877653 455543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0066 Score=57.75 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccc----cccccC--CCceeEEeccccccccCCCCEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKEN----VMHHFG--NPNFELIRHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~----~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih 186 (442)
.+++|.|+|+ |.+|..++..|...|. +|+++|++.. +.+. +.+... ...+.+.. | ...++.++|+||.
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~-~~~~~~~dl~~~~~~~~~~~~i~~-~-~~~al~~aDvVii 80 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANES-KAIGDAMDFNHGKVFAPKPVDIWH-G-DYDDCRDADLVVI 80 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHH-HHHHHHHHHHHHTTSSSSCCEEEE-C-CGGGTTTCSEEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcc-hHHHHHhhHHHHhhhcCCCeEEEc-C-cHHHhCCCCEEEE
Confidence 3469999998 9999999999988774 8999998643 2211 111111 11344443 2 2356889999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+++..... .....+.+..|..-...+++.+.+... .++.+|
T Consensus 81 a~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 81 CAGANQKP--GETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp CCSCCCCT--TTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred cCCCCCCC--CCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99864322 123345677888888888888888764 455444
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0039 Score=60.50 Aligned_cols=94 Identities=19% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCEEEEEcCCchhHHHHHHH-HHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDR-LIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~-Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
|++|.|.||+|++|+.+++. |.++++ .++.+.....++ .. ..+....+.+.+.+-. ..+.++|+||-+.+.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v-~~~~g~~i~~~~~~~~-~~~~~~DvVf~a~g~- 75 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AA-PSFGGTTGTLQDAFDL-EALKALDIIVTCQGG- 75 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BC-CGGGTCCCBCEETTCH-HHHHTCSEEEECSCH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--Cc-cccCCCceEEEecCCh-HHhcCCCEEEECCCc-
Confidence 46899999999999999995 444543 555555432222 11 1111123333333211 124689999988751
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecC
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTS 231 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~ 231 (442)
..+...+..+.+.|+ .+|=.||.
T Consensus 76 -----------------~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 76 -----------------DYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp -----------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred -----------------hhHHHHHHHHHHCCCCEEEEcCChh
Confidence 234456677778887 34444443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0034 Score=57.59 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCC------------------Ccccccccc--CCC--ceeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTG------------------RKENVMHHF--GNP--NFELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~------------------~~~~~~~~~--~~~--~v~~~~~ 171 (442)
+.++|+|.|+ |.+|+++++.|.+.|. +|+++++..-. +.+.....+ .++ .++.+..
T Consensus 30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 4458999995 8999999999999996 89999886411 001111111 012 3344443
Q ss_pred cccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 172 DVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 172 D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
++.+ ..+.++|+||.+.. |...-..+.++|++.++.+|+.+..+.+
T Consensus 109 ~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g~~ 158 (249)
T 1jw9_B 109 LLDDAELAALIAEHDLVLDCTD-----------------NVAVRNQLNAGCFAAKVPLVSGAAIRME 158 (249)
T ss_dssp CCCHHHHHHHHHTSSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEEEBTE
T ss_pred cCCHhHHHHHHhCCCEEEEeCC-----------------CHHHHHHHHHHHHHcCCCEEEeeeccce
Confidence 3432 24567999998752 2222345677888888888887655443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00069 Score=56.51 Aligned_cols=70 Identities=16% Similarity=0.277 Sum_probs=48.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+++|+|+|+ |.+|+.++..|.+.|++|++.+|..... +.+...+ ++.....+-..+.+.++|+||.+.+.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~-~~~a~~~---~~~~~~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHV-RAFAEKY---EYEYVLINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHH-HHHHHHH---TCEEEECSCHHHHHHTCSEEEECSCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHH-HHHHHHh---CCceEeecCHHHHhcCCCEEEEeCCC
Confidence 558999995 9999999999999999988888853322 2222222 23333444444566789999998764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0075 Score=57.13 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=68.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccc------cCCCceeEEeccccccccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHH------FGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~------~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
||+|.|+| .|.+|..++..|++.| ++|++++|+.... +..... .....+.+...|. +.+.++|+||-+
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViia 76 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKV-KADQIDFQDAMANLEAHGNIVINDW--AALADADVVIST 76 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEEC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEe
Confidence 46899999 7999999999999999 8999999853211 111110 0111234433454 567899999998
Q ss_pred cccCCCCc--ccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~--~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
++...... ......+....|+.....+++.+.+... .+|.+|
T Consensus 77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 86422000 1112234566788888888888877653 444433
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.01 Score=55.25 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEE-eCCCCCC-ccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVV-DNFFTGR-KENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l-~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
.++||.|.|++|-+|+.+++.+.+. +.+++.. +|..... ..............+.-.+-.++.+.++|+||.+..
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-- 97 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-- 97 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--
Confidence 4568999999999999999999876 5676655 4432211 111111111111112112223345568999998652
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
-..+...++.|.++|+.+|.-+
T Consensus 98 ----------------p~a~~~~~~~~l~~Gv~vViGT 119 (288)
T 3ijp_A 98 ----------------PQASVLYANYAAQKSLIHIIGT 119 (288)
T ss_dssp ----------------HHHHHHHHHHHHHHTCEEEECC
T ss_pred ----------------HHHHHHHHHHHHHcCCCEEEEC
Confidence 2234567788888898776433
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0089 Score=54.52 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=27.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDN 148 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r 148 (442)
|+|+|.|++|.+|+.+++.+.+. +++++....
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEc
Confidence 48999999999999999999876 889886654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0011 Score=62.14 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCC----C---ceeEEeccccccccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN----P---NFELIRHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~----~---~v~~~~~D~~~~~~~~~d~Vih 186 (442)
.++++++|+|+ |.+|+.++..|++.| +|++.+|+... .+.+...+.. . .+++.+ + .+.+.++|+|||
T Consensus 126 l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~-~~~l~~~~~~~~~~~~~~~~d~~~--~-~~~~~~~DilVn 199 (287)
T 1nvt_A 126 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEK-AEALAKEIAEKLNKKFGEEVKFSG--L-DVDLDGVDIIIN 199 (287)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHH-HHHHHHHHHHHHTCCHHHHEEEEC--T-TCCCTTCCEEEE
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHH-HHHHHHHHhhhcccccceeEEEee--H-HHhhCCCCEEEE
Confidence 45679999998 599999999999999 99999885321 1122111110 0 122222 2 345678999999
Q ss_pred ecccC
Q 013467 187 LACPA 191 (442)
Q Consensus 187 ~A~~~ 191 (442)
+++..
T Consensus 200 ~ag~~ 204 (287)
T 1nvt_A 200 ATPIG 204 (287)
T ss_dssp CSCTT
T ss_pred CCCCC
Confidence 99854
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00077 Score=64.73 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+++|+|+||+|.||..+++.+...|.+|++++++.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 184 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA 184 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467999999999999999999999999999998753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0008 Score=65.23 Aligned_cols=33 Identities=27% Similarity=0.169 Sum_probs=31.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
++|+|+||+|.||..+++.+...|. +|++++++
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~ 195 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGT 195 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 6999999999999999999999999 99999885
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.014 Score=55.16 Aligned_cols=107 Identities=12% Similarity=0.105 Sum_probs=72.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc-----CCCceeEEe-ccccccccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF-----GNPNFELIR-HDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~-~D~~~~~~~~~d~Vih~A~~ 190 (442)
||.|+|| |.+|..++..|+..|. +|+.+|+..........+.. ......+.. .|. .++.++|+||..++.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCCC
Confidence 5899998 9999999999988887 79999986322211111100 112333443 453 578999999999885
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+....|+.-...+++.+.+... .+|.+|
T Consensus 78 ~~--k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 78 GR--KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp CC--CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CC--CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 32 22334556778899999999999887653 666665
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=60.52 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
..+++|+|+|+ |.+|+.++..|.+.|. +|++.+|..+. .+.+...+....-.....+-..+.+.++|+||++.+..
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~k-a~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEK-AERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHH-HHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHH-HHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence 45679999996 8899999999999997 99999885322 12222222110002222232334567899999998753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0017 Score=62.66 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+++|+|+||+|.+|..+++.+...|.+|++++|+.
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~ 204 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGE 204 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECST
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCH
Confidence 457999999999999999999999999999999854
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.001 Score=64.42 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~ 205 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 205 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence 457999999999999999999999999999998753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0075 Score=54.49 Aligned_cols=65 Identities=6% Similarity=-0.051 Sum_probs=48.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
++|+|+|+ |.+|+.+++.|.+.|+ |++++++.. ..... . .++.++.+|..+. .+.++|.||.+.+
T Consensus 10 ~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~----~~~~~-~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENV----RKKVL-R-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG----HHHHH-H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH----HHHHH-h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 47999997 9999999999999999 999976432 11111 1 4578888887754 2567999998653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00081 Score=64.30 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+++|+|+||+|.||..+++.+...|.+|++++++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~ 174 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT 174 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45799999999999999999999999999999885
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.005 Score=55.26 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=59.2
Q ss_pred CCCcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEE
Q 013467 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQI 184 (442)
Q Consensus 105 ~~~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~V 184 (442)
-..+|.-...++++|+|+|| |-+|...++.|++.|.+|++++.... +.+.......++.++..+..+..+.++|.|
T Consensus 20 ~~~~Pifl~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~---~~l~~l~~~~~i~~i~~~~~~~dL~~adLV 95 (223)
T 3dfz_A 20 RHMYTVMLDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVS---AEINEWEAKGQLRVKRKKVGEEDLLNVFFI 95 (223)
T ss_dssp --CCEEEECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCC---HHHHHHHHTTSCEEECSCCCGGGSSSCSEE
T ss_pred cCccccEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHcCCcEEEECCCCHhHhCCCCEE
Confidence 34567777888999999995 89999999999999999999975322 222222233567788777777788899999
Q ss_pred EEe
Q 013467 185 YHL 187 (442)
Q Consensus 185 ih~ 187 (442)
|-+
T Consensus 96 IaA 98 (223)
T 3dfz_A 96 VVA 98 (223)
T ss_dssp EEC
T ss_pred EEC
Confidence 954
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00097 Score=63.97 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+.+|+|+||+|.||..+++.+...|++|++++|+.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456899999999999999999999999999999853
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0011 Score=64.35 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+.+|+|+||+|.||..+++.+...|.+|++++++.
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~ 197 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 457999999999999999999999999999999853
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0061 Score=54.49 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.+|+|.|+| +|.+|+.+++.|.+.|++|++.+|+.... +.. ...++... + ..+.+.++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~-~~~----~~~g~~~~--~-~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRT-ARL----FPSAAQVT--F-QEEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHH-HHH----SBTTSEEE--E-HHHHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHH----HHcCCcee--c-HHHHHhCCCEEEECCC
Confidence 356899999 89999999999999999999998853211 111 11133332 2 2235678999998764
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0064 Score=56.48 Aligned_cols=72 Identities=10% Similarity=0.207 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++++|+|+ |.+|+.++..|.+.|. +|++.+|.... .+.+...+....+.....+-... .++|+|||+..
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~-a~~la~~~~~~~~~~~~~~~l~~--~~~DivInaTp 190 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAK-ALALRNELDHSRLRISRYEALEG--QSFDIVVNATS 190 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHH-HHHHHHHHCCTTEEEECSGGGTT--CCCSEEEECSS
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHHHhccCCeeEeeHHHhcc--cCCCEEEECCC
Confidence 45679999996 8999999999999995 99999886432 22222222222344443332221 67999999864
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=56.78 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC-CCCCccccccccC------C----CceeEEeccccccccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF-FTGRKENVMHHFG------N----PNFELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~-~~~~~~~~~~~~~------~----~~v~~~~~D~~~~~~~~~d~ 183 (442)
+++|.|.||||++|+.|++.|.++.+ ++..+... ..++. ...... . ....+...| ...+.++|+
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~--~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDv 82 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKP--YGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDI 82 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSB--HHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCC--hhHhcccccccccccccccceEEeCC--HHHhcCCCE
Confidence 45899999999999999997777653 66666432 21111 111100 0 122222222 234578999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
||-+.+.. .+..++..+.+.|+++|-.|+..-+
T Consensus 83 vf~a~p~~------------------~s~~~a~~~~~~G~~vIDlSa~~R~ 115 (359)
T 4dpk_A 83 IFSPLPQG------------------AAGPVEEQFAKEGFPVISNSPDHRF 115 (359)
T ss_dssp EEECCCTT------------------THHHHHHHHHHTTCEEEECSSTTTT
T ss_pred EEECCChH------------------HHHHHHHHHHHCCCEEEEcCCCccC
Confidence 99887521 1224556666789999999987543
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=56.78 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC-CCCCccccccccC------C----CceeEEeccccccccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF-FTGRKENVMHHFG------N----PNFELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~-~~~~~~~~~~~~~------~----~~v~~~~~D~~~~~~~~~d~ 183 (442)
+++|.|.||||++|+.|++.|.++.+ ++..+... ..++. ...... . ....+...| ...+.++|+
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~--~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDv 82 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKP--YGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDI 82 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSB--HHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCC--hhHhcccccccccccccccceEEeCC--HHHhcCCCE
Confidence 45899999999999999997777653 66666432 21111 111100 0 122222222 234578999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
||-+.+.. .+..++..+.+.|+++|-.|+..-+
T Consensus 83 vf~a~p~~------------------~s~~~a~~~~~~G~~vIDlSa~~R~ 115 (359)
T 4dpl_A 83 IFSPLPQG------------------AAGPVEEQFAKEGFPVISNSPDHRF 115 (359)
T ss_dssp EEECCCTT------------------THHHHHHHHHHTTCEEEECSSTTTT
T ss_pred EEECCChH------------------HHHHHHHHHHHCCCEEEEcCCCccC
Confidence 99887521 1224556666789999999987543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0029 Score=60.05 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCC--CCccccccccC---CCceeEEeccc---cccccCCCCE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFT--GRKENVMHHFG---NPNFELIRHDV---VEPLLLEVDQ 183 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~--~~~~~~~~~~~---~~~v~~~~~D~---~~~~~~~~d~ 183 (442)
..++++++|+|+ |.+|+.++..|.+.|. +|++.+|... .+.+.+...+. ...+..+..+- ..+.+.++|+
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 346789999997 8999999999999998 8999998621 11122211111 11234443332 2234568999
Q ss_pred EEEeccc
Q 013467 184 IYHLACP 190 (442)
Q Consensus 184 Vih~A~~ 190 (442)
|||+...
T Consensus 230 IINaTp~ 236 (315)
T 3tnl_A 230 FTNATGV 236 (315)
T ss_dssp EEECSST
T ss_pred EEECccC
Confidence 9998753
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0017 Score=62.43 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+++|+|+||+|.||..+++.+...|.+|++++++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~ 189 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGS 189 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45799999999999999999999999999999875
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0023 Score=59.92 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccC----CCceeEEeccccccccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFG----NPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.++++++|+|+ |.+|+.++..|.+.|. +|++.+|..... +.+...+. ...+.....+-....+.++|+|||+.
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a-~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRA-QALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 45679999997 9999999999999998 799998864322 22221111 12233333333344566799999987
Q ss_pred cc
Q 013467 189 CP 190 (442)
Q Consensus 189 ~~ 190 (442)
..
T Consensus 203 p~ 204 (283)
T 3jyo_A 203 PM 204 (283)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0055 Score=57.22 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCC-CceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGN-PNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++++|+|+ |.+|+.++..|.+.|. +|++.+|..... +.+...+.. ..+.....+- ...++|+|||+...
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a-~~la~~~~~~~~~~~~~~~~---l~~~aDiIInaTp~ 197 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKA-EQLAELVAAYGEVKAQAFEQ---LKQSYDVIINSTSA 197 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHH-HHHHHHHGGGSCEEEEEGGG---CCSCEEEEEECSCC
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhccCCeeEeeHHH---hcCCCCEEEEcCcC
Confidence 45679999997 8999999999999995 999999864321 222221111 1234433221 22679999998753
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.005 Score=57.31 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++++|+|+ |.+|+.++..|.+.|. +|++.+|..... +.+. ..+.....+-....+.++|+|||+..
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a-~~la-----~~~~~~~~~~~~~~~~~aDiVInaTp 184 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRF-NNWS-----LNINKINLSHAESHLDEFDIIINTTP 184 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGG-TTCC-----SCCEEECHHHHHHTGGGCSEEEECCC
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHH-----HhcccccHhhHHHHhcCCCEEEECcc
Confidence 34678999996 8999999999999998 899998864322 2111 12233333333345678999999864
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.049 Score=52.34 Aligned_cols=103 Identities=14% Similarity=0.227 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc------------------ccccc--CCC--ceeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN------------------VMHHF--GNP--NFELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~------------------~~~~~--~~~--~v~~~~~ 171 (442)
+..+|+|.|+ |.+|+++++.|...|. +++++|...-..... ....+ -++ .+..+..
T Consensus 35 ~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~ 113 (346)
T 1y8q_A 35 RASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE 113 (346)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence 3458999995 8899999999999996 888887532111000 00000 122 3444444
Q ss_pred ccc---ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 172 DVV---EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 172 D~~---~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
++. +..+.++|+||.+. .|...-..+-++|.+.++.||..++.+.+|
T Consensus 114 ~~~~~~~~~~~~~dvVv~~~-----------------d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G 163 (346)
T 1y8q_A 114 DIEKKPESFFTQFDAVCLTC-----------------CSRDVIVKVDQICHKNSIKFFTGDVFGYHG 163 (346)
T ss_dssp CGGGCCHHHHTTCSEEEEES-----------------CCHHHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred ccCcchHHHhcCCCEEEEcC-----------------CCHHHHHHHHHHHHHcCCCEEEEeecccEE
Confidence 442 33567899999864 233344467788999999999888777665
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.042 Score=52.93 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccc----------------------cCCCceeEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHH----------------------FGNPNFELIR 170 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~----------------------~~~~~v~~~~ 170 (442)
.+..+|+|.|+ |.+|+++++.|+..|. +++++|+..-......+.. .....++.+.
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 34558999996 8899999999999996 8999987532111110000 0112344444
Q ss_pred ccccccc----cCCCCEEEEecccCCCCcccCChhHHHHHhHH-HHHHHHHHHHHcCCeEEEeecC
Q 013467 171 HDVVEPL----LLEVDQIYHLACPASPVHYKFNPVKTIKTNVV-GTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 171 ~D~~~~~----~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~-gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
.++.+.. +.++|+||.+.. |.. .-..+-++|.+.++.+|+.+..
T Consensus 195 ~~i~~~~~~~~~~~~DlVvd~~D-----------------n~~~~r~~ln~~c~~~~~p~i~~~~~ 243 (353)
T 3h5n_A 195 LNINDYTDLHKVPEADIWVVSAD-----------------HPFNLINWVNKYCVRANQPYINAGYV 243 (353)
T ss_dssp CCCCSGGGGGGSCCCSEEEECCC-----------------CSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccCchhhhhHhccCCEEEEecC-----------------ChHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 4432222 678999998652 111 1123557889999888877654
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0036 Score=63.93 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec-cccccccCCCCEEEEecccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH-DVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~-D~~~~~~~~~d~Vih~A~~~ 191 (442)
.++++++|||| |.+|+.++..|++.|.+|++.+|.... .+.+...+.. +.... |+.+.....+|+|||+++..
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~-a~~la~~~~~---~~~~~~dl~~~~~~~~DilVN~agvg 435 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYER-ALELAEAIGG---KALSLTDLDNYHPEDGMVLANTTSMG 435 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHH-HHHHHHHTTC----CEETTTTTTC--CCSEEEEECSSTT
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHHcCC---ceeeHHHhhhccccCceEEEECCCCC
Confidence 34568999999 799999999999999999999885322 1222222211 11221 22111223589999999863
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0033 Score=61.00 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecc--ccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD--VVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D--~~~~~~~~~d~Vih~A~~ 190 (442)
++++|+|+|+ |.+|+.++..|...|.+|++++|+.... +....... ..+..+..+ ...+.+.++|+||++.+.
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 4579999998 9999999999999999999999853221 11111111 112222211 122345689999999874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.016 Score=57.11 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=49.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
.++|+|+|. |-+|+.+++.|.+.|++|++++++...- +.. ...++.++.+|..+. -+.++|+||-+.
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v-~~~----~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHI-ETL----RKFGMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHH-HHH----HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHH-HHH----HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 357999995 9999999999999999999998753211 111 223567788888765 245789999765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0025 Score=61.68 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+.+|+|+||+|.||..++..+...|.+|++++++.
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 202 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST 202 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 456999999999999999999999999999999753
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.048 Score=48.30 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
..+|+|.|.| .|.+|+.++..|.+.|++|++.+|+
T Consensus 17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 17 FQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4567999999 7999999999999999999999874
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0049 Score=58.12 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec----cccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH----DVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----D~~~~~~~~~d~Vih~A~ 189 (442)
.+.+|+|+||+|.+|..++..+...|.+|++++++..... ... .+... .+++. |..+ .+.++|+||+ +|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~-~~ga~--~~~~~~~~~~~~~-~~~~~d~vid-~g 197 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPL-ALGAE--EAATYAEVPERAK-AWGGLDLVLE-VR 197 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHH-HTTCS--EEEEGGGHHHHHH-HTTSEEEEEE-CS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHH-hcCCC--EEEECCcchhHHH-HhcCceEEEE-CC
Confidence 4569999999999999999999899999999998543222 121 12211 12222 1212 2367999999 86
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.014 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++|.|.|+ |.+|+.++..|++.|++|++.+|+.
T Consensus 4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 468999985 9999999999999999999998864
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.028 Score=51.12 Aligned_cols=33 Identities=15% Similarity=0.406 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEE-EeC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIV-VDN 148 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~-l~r 148 (442)
+||||.|+|+ |.+|+.+++.+.+++++++. +++
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~ 35 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIEN 35 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEec
Confidence 3689999999 99999999999998777665 444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.013 Score=54.62 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=45.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+|+|.|.|+||.+|+.+++.|.+.|++|++.+|+.... +.... .++.. .+ ..+.+.++|+||-+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~-~~~~~----~g~~~--~~-~~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGR-DRLQG----MGIPL--TD-GDGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHH-HHHHH----TTCCC--CC-SSGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHh----cCCCc--CC-HHHHhcCCCEEEEcC
Confidence 47999999999999999999999999999998753221 11111 11222 12 234566899999875
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.074 Score=51.41 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=53.9
Q ss_pred CEEEEEcCCchhHHHHHH-HHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 117 LRIVVTGGAGFVGSHLVD-RLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~-~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
|+|.|.||||++|+.|++ -|.++.+ ++..+.-+..+.. ... +......+.+.+ ....+.++|+||-+.+.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~-~~~~~~~~~~~~-~~~~~~~~Dvvf~a~~~-- 74 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--APN-FGKDAGMLHDAF-DIESLKQLDAVITCQGG-- 74 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB--CCC-SSSCCCBCEETT-CHHHHTTCSEEEECSCH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcC--HHH-hCCCceEEEecC-ChhHhccCCEEEECCCh--
Confidence 589999999999999999 6666653 6666543222221 111 111122333321 11235789999988752
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecC
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTS 231 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~ 231 (442)
.-+...+..+.+.|+ ++|=.|+.
T Consensus 75 ----------------~~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 75 ----------------SYTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp ----------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred ----------------HHHHHHHHHHHHCCCCEEEEeCCch
Confidence 123345666667785 56666654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.079 Score=43.58 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=52.5
Q ss_pred CCCEEEEEcCC---chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 115 KGLRIVVTGGA---GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 115 ~~~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
++++|.|.|++ |-+|..+++.|++.|++|+.++... +.. .++..+ .++ ++....+|+++-+..
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~----~~i------~G~~~~-~s~-~el~~~vDlvii~vp-- 78 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNY----DEI------EGLKCY-RSV-RELPKDVDVIVFVVP-- 78 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC----SEE------TTEECB-SSG-GGSCTTCCEEEECSC--
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCC----CeE------CCeeec-CCH-HHhCCCCCEEEEEeC--
Confidence 45589999997 8999999999999999988776531 111 122211 122 233446899887542
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEe
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLT 228 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~i 228 (442)
-.....+++.|.+.|+ .++..
T Consensus 79 ----------------~~~v~~v~~~~~~~g~~~i~~~ 100 (138)
T 1y81_A 79 ----------------PKVGLQVAKEAVEAGFKKLWFQ 100 (138)
T ss_dssp ----------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred ----------------HHHHHHHHHHHHHcCCCEEEEc
Confidence 1234456666777887 44443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0044 Score=59.52 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCC-ceeEEeccccccc-----cCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP-NFELIRHDVVEPL-----LLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~-----~~~~d~Vih~A 188 (442)
.+.+|+|+||+|.+|...+..+...|.+|++++++.... +.... +... -++..+.|..+.. -.++|+||+++
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~-lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 221 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT-EELLR-LGAAYVIDTSTAPLYETVMELTNGIGADAAIDSI 221 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHH-HTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh-CCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECC
Confidence 456999999999999999998888899999999864432 22222 1111 1111112222211 13699999998
Q ss_pred c
Q 013467 189 C 189 (442)
Q Consensus 189 ~ 189 (442)
|
T Consensus 222 g 222 (340)
T 3gms_A 222 G 222 (340)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0031 Score=60.39 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+.+|+|+||+|.+|...+..+...|.+|++++++
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~ 182 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAST 182 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45689999999999999999999999999999885
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.05 Score=51.50 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEecccccc-ccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-LLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~d~Vih~A 188 (442)
...|+|.|.| .|.+|..+++.|.+.|+ +|++.+|+...... ... ...++-...|. ++ .+.++|+||-+.
T Consensus 31 ~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~-a~~---~G~~~~~~~~~-~~~~~~~aDvVilav 102 (314)
T 3ggo_A 31 LSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISK-AVD---LGIIDEGTTSI-AKVEDFSPDFVMLSS 102 (314)
T ss_dssp CSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HHH---TTSCSEEESCT-TGGGGGCCSEEEECS
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHH---CCCcchhcCCH-HHHhhccCCEEEEeC
Confidence 3457999999 79999999999999999 99999885422111 111 11111112222 33 577899999875
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.028 Score=55.95 Aligned_cols=33 Identities=42% Similarity=0.556 Sum_probs=30.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|.| .|++|..++..|++.|++|++++|+.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899998 79999999999999999999998853
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.066 Score=53.69 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CC-eEEEEeCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GD-SVIVVDNFFT 151 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~-~V~~l~r~~~ 151 (442)
.+|+|.|.| .|++|..++..|++. || +|++++++..
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 457999999 699999999999999 99 9999999755
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0039 Score=59.95 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+++|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456999999999999999999999999999998853
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.022 Score=52.57 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=45.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+++++|+|+ |..|+.++..|.+.|.+|++..|..+.. +.+. .+. +.....+- +.++|+|||+...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka-~~la-~~~---~~~~~~~~----l~~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGL-DFFQ-RLG---CDCFMEPP----KSAFDLIINATSA 182 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTH-HHHH-HHT---CEEESSCC----SSCCSEEEECCTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH-HCC---CeEecHHH----hccCCEEEEcccC
Confidence 679999996 9999999999999999999998865432 2222 222 23332221 2279999998654
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.027 Score=52.07 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=34.8
Q ss_pred cCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 108 IPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 108 ~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+|.....++|+|+|+|| |-+|...++.|++.|++|++++..
T Consensus 5 lpl~~~l~~k~VLVVGg-G~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 5 LQLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp EEEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeEEEEcCCCEEEEECC-cHHHHHHHHHHHhCCCEEEEEcCC
Confidence 44455667889999995 899999999999999999999754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0087 Score=57.51 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecc--cccc---cc--CCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD--VVEP---LL--LEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D--~~~~---~~--~~~d~Vih~ 187 (442)
.+.+|+|+||+|.+|...+..+...|.+|++++++.... +... .+... .+++.+ ..+. .. .++|+||++
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~-~~ga~--~v~~~~~~~~~~v~~~~~~~g~Dvvid~ 234 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT-EFVK-SVGAD--IVLPLEEGWAKAVREATGGAGVDMVVDP 234 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHH-HHTCS--EEEESSTTHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHH-hcCCc--EEecCchhHHHHHHHHhCCCCceEEEEC
Confidence 456999999999999999999999999999999854322 2221 12211 122222 2111 11 269999999
Q ss_pred cc
Q 013467 188 AC 189 (442)
Q Consensus 188 A~ 189 (442)
+|
T Consensus 235 ~g 236 (342)
T 4eye_A 235 IG 236 (342)
T ss_dssp CC
T ss_pred Cc
Confidence 87
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0029 Score=60.41 Aligned_cols=36 Identities=28% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+.+|+|+||+|.+|...+..+...|.+|++++++.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 175 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP 175 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456999999999999999999988999999998753
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.12 Score=48.25 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASP 193 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~ 193 (442)
.++|+|.|++|-.|+.+++.|.+.|++++........ .+. . .++..+. ++ ++... ++|++|-+..
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~-g~~---i---~G~~vy~-sl-~el~~~~~~Dv~Ii~vp---- 73 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-GME---V---LGVPVYD-TV-KEAVAHHEVDASIIFVP---- 73 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TCE---E---TTEEEES-SH-HHHHHHSCCSEEEECCC----
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCC-Cce---E---CCEEeeC-CH-HHHhhcCCCCEEEEecC----
Confidence 4589999999999999999999999986533322111 011 0 1222221 22 22233 6899886532
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCe-EEEeec
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTST 230 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r-~i~iSS 230 (442)
-..+..+++.|.+.|++ +|.+++
T Consensus 74 --------------~~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 74 --------------APAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp --------------HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred --------------HHHHHHHHHHHHHCCCCEEEEECC
Confidence 23455688888889986 555553
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.095 Score=50.76 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCEEEEEcCCchhHHHHHH-HHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVD-RLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~-~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
.++|.|.||||++|+.|++ .|.++.+ ++..+.-+..+.. ... +......+.+.+ ....+.++|+||-+.+.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~-~~~~~~~v~~~~-~~~~~~~vDvvf~a~~~- 78 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGK--APS-FAKNETTLKDAT-SIDDLKKCDVIITCQGG- 78 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSB--CCT-TCCSCCBCEETT-CHHHHHTCSEEEECSCH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCC--HHH-cCCCceEEEeCC-ChhHhcCCCEEEECCCh-
Confidence 3589999999999999999 6666653 5665543222211 111 111122222221 11235689999988752
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecC
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTS 231 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~ 231 (442)
..+...+..+.+.|+ ++|=.|+.
T Consensus 79 -----------------~~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 79 -----------------DYTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp -----------------HHHHHHHHHHHHTTCCSEEEECSST
T ss_pred -----------------HHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 123345666667786 56666654
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.02 Score=53.37 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=43.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|+|.|.| .|.+|..++..|.+.|++|++.+|+...... +.. .++. ..+-..+.+.++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~-~~~----~g~~--~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEE-LAA----LGAE--RAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHH-HHH----TTCE--ECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-HHH----CCCe--ecCCHHHHHhcCCEEEEEc
Confidence 6899999 6999999999999999999999886432221 111 1222 2222334456789999765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0074 Score=58.89 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEE--eccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELI--RHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~--~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++|+|+|+ |.+|..+++.+...|.+|++.+|+.... +.....+.. .+... ..+-.++.+.++|+||++++.
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l-~~~~~~~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKL-RQLDAEFCG-RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHTTT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHhcCC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 45779999998 9999999999999999999999853221 111111111 11111 111223445679999998763
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0049 Score=59.77 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+.+|+|+||+|.+|..+++.+...|.+|++++++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~ 197 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS 197 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 45699999999999999999999999999999875
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.12 Score=41.58 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.7
Q ss_pred CCCEEEEEcCC---chhHHHHHHHHHhCCCeEEEEe
Q 013467 115 KGLRIVVTGGA---GFVGSHLVDRLIARGDSVIVVD 147 (442)
Q Consensus 115 ~~~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~ 147 (442)
++++|.|.||+ +-.|..+.+.|++.|++|+.+.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVn 38 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVG 38 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEES
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEEC
Confidence 35689999998 6689999999999999999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.023 Score=53.99 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
..+|+|.|.| .|.+|..++..|.+.|++|++.+|+..... .+. ..++.. .+-.++.+.++|+||-+.
T Consensus 29 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-~l~----~~g~~~--~~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 29 PYARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAA-SLA----ALGATI--HEQARAAARDADIVVSML 95 (320)
T ss_dssp CCCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHH-HHH----TTTCEE--ESSHHHHHTTCSEEEECC
T ss_pred cCCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHH-HHH----HCCCEe--eCCHHHHHhcCCEEEEEC
Confidence 3567999998 699999999999999999999988533211 111 112222 222334567899999765
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.043 Score=54.81 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCC-CCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLE-VDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~d~Vih~A~~ 190 (442)
.++++|+|.|. |..|..+++.|.++|++|++.|+...... .....+...++.+..+...+..+.+ +|.||...|.
T Consensus 7 ~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~-~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 7 FENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDEN-PTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI 82 (451)
T ss_dssp TTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGC-HHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCC-hHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence 35679999997 88999999999999999999998542111 1112223345666655444444555 8999988774
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.078 Score=53.00 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=66.3
Q ss_pred cCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEe
Q 013467 108 IPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 108 ~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
+|.-...++++|+|.|| |-+|...++.|++.|++|++++.... +.+.......++.++..+..+..+.++|.||-+
T Consensus 4 ~P~~~~l~~~~vlVvGg-G~va~~k~~~L~~~ga~V~vi~~~~~---~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a 79 (457)
T 1pjq_A 4 LPIFCQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA 79 (457)
T ss_dssp EEEEECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC
T ss_pred eeeEEECCCCEEEEECC-CHHHHHHHHHHHhCcCEEEEEcCCCC---HHHHHHHhcCCEEEEECCCCccccCCccEEEEc
Confidence 34444566789999995 89999999999999999999985322 222222233567888887777778889998864
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCe
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 224 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r 224 (442)
-+. + .. ...+.+.|++.|+.
T Consensus 80 t~~---------~----~~----n~~i~~~a~~~~i~ 99 (457)
T 1pjq_A 80 TDD---------D----TV----NQRVSDAAESRRIF 99 (457)
T ss_dssp CSC---------H----HH----HHHHHHHHHHTTCE
T ss_pred CCC---------H----HH----HHHHHHHHHHcCCE
Confidence 321 1 12 23577888887753
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.039 Score=51.72 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=44.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.|+|.|.| .|.+|..++..|.+.|++|++.+|+........ . .++. ..+-.++... +|+||-+.
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~-~----~g~~--~~~~~~~~~~-aDvvi~~v 78 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLA-E----AGAT--LADSVADVAA-ADLIHITV 78 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHH-H----TTCE--ECSSHHHHTT-SSEEEECC
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-H----CCCE--EcCCHHHHHh-CCEEEEEC
Confidence 45899998 799999999999999999999998654332211 1 1222 2222334455 99999765
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.029 Score=55.78 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=57.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-C---eEEEEeCCCCCCccccccccCCCceeEEeccc--------cccccCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-D---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--------VEPLLLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~--------~~~~~~~~d~V 184 (442)
++|+|.| .|.||+.++..|+++. . +|++.+.+...+ .+.... ++.+...++ .+..+.+.|+|
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~~~~---g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVAQQY---GVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHHHHH---TCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHHhhc---CCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 3799999 7999999999999875 3 688887654332 211111 233433322 22345556999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
||++-+. ....++++|.++|+.+|-++
T Consensus 88 IN~s~~~------------------~~l~Im~acleaGv~YlDTa 114 (480)
T 2ph5_A 88 IDVSIGI------------------SSLALIILCNQKGALYINAA 114 (480)
T ss_dssp EECCSSS------------------CHHHHHHHHHHHTCEEEESS
T ss_pred EECCccc------------------cCHHHHHHHHHcCCCEEECC
Confidence 9865321 12368999999998776554
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0081 Score=56.87 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=48.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCC--CccccccccC---CCceeEEecccc---ccccCCCCE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTG--RKENVMHHFG---NPNFELIRHDVV---EPLLLEVDQ 183 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~--~~~~~~~~~~---~~~v~~~~~D~~---~~~~~~~d~ 183 (442)
...+++++|+|+ |..|+.++..|.+.|. +|++..|.... +.+.+...+. ...+.....+-. ...+.++|+
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence 345679999996 9999999999999997 89999886221 1111211111 112333333221 234567999
Q ss_pred EEEeccc
Q 013467 184 IYHLACP 190 (442)
Q Consensus 184 Vih~A~~ 190 (442)
|||+-..
T Consensus 224 IINaTp~ 230 (312)
T 3t4e_A 224 LTNGTKV 230 (312)
T ss_dssp EEECSST
T ss_pred EEECCcC
Confidence 9998654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.023 Score=53.46 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=41.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+++|.|.||.|.+|..++..|.+.|++|++.+|+... | ..+.+.++|+||-+.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------------~-~~~~~~~aDvVilav 73 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------------V-AESILANADVVIVSV 73 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------------G-HHHHHTTCSEEEECS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------------C-HHHHhcCCCEEEEeC
Confidence 4589999999999999999999999999999874320 1 223456789988765
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.099 Score=47.72 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcc------------------cccccc--CCCc--eeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKE------------------NVMHHF--GNPN--FELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~------------------~~~~~~--~~~~--v~~~~~ 171 (442)
+.++|+|.|+ |.+|+++++.|...|. +++++|...-.... ...+.+ .++. ++.+..
T Consensus 27 ~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 105 (251)
T 1zud_1 27 LDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ 105 (251)
T ss_dssp HTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4558999996 7799999999999996 78888764311100 000000 0122 333333
Q ss_pred cccc----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 172 DVVE----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 172 D~~~----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
++.+ ..+.++|+||.+.. |...-..+-++|.+.++.+|+.+..+.+|
T Consensus 106 ~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~~p~i~~~~~g~~G 156 (251)
T 1zud_1 106 RLTGEALKDAVARADVVLDCTD-----------------NMATRQEINAACVALNTPLITASAVGFGG 156 (251)
T ss_dssp CCCHHHHHHHHHHCSEEEECCS-----------------SHHHHHHHHHHHHHTTCCEEEEEEEBTEE
T ss_pred cCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccce
Confidence 3322 24456899998642 22233456678888888888887655443
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.016 Score=56.47 Aligned_cols=70 Identities=27% Similarity=0.353 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec---cccccc--cCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DVVEPL--LLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---D~~~~~--~~~~d~Vih~A~ 189 (442)
.+.+|+|+||+|.||...+..+...|.+|+++++ +.+.+.. ..+... .+++. |..+.. ..++|+||+++|
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~--~~~~~~~-~~lGa~--~v~~~~~~~~~~~~~~~~g~D~vid~~g 257 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS--QDASELV-RKLGAD--DVIDYKSGSVEEQLKSLKPFDFILDNVG 257 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC--GGGHHHH-HHTTCS--EEEETTSSCHHHHHHTSCCBSEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC--hHHHHHH-HHcCCC--EEEECCchHHHHHHhhcCCCCEEEECCC
Confidence 4579999999999999999988889999998874 2222222 222211 12221 222211 247999999987
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.036 Score=55.29 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=30.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|.| .|++|..++..|++.|++|++++|+.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 6899999 59999999999999999999999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=57.15 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecc---ccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD---VVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---~~~~~~~~~d~Vih~A~~ 190 (442)
.+.+|+|+|+ |.||..++..+...|.+|++++++..... .....+... .+++.+ .......++|+||+++|.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~-~~~~~lGa~--~v~~~~~~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKE-EALKNFGAD--SFLVSRDQEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHH-HHHHTSCCS--EEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhcCCc--eEEeccCHHHHHHhhCCCCEEEECCCc
Confidence 4569999996 99999999999889999999987543221 111111211 122221 122233579999999873
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0075 Score=58.06 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~ 150 (442)
.+.+|+|+||+|.||..++..+... |.+|++++++.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~ 206 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 206 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 4569999999999999999999998 99999998753
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.04 Score=51.13 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=44.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCc---eeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN---FELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~---v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
|+|.|.|+ |.+|..++..|.+.|++|++++|+..... .+........ ..+.. +. .+.+.++|+||-+..
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~~-~l~~~~~~~~~~~~~~~~-~~-~~~~~~~d~vi~~v~ 72 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYC-SVNLVETDGSIFNESLTA-ND-PDFLATSDLLLVTLK 72 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEE-EEEEECTTSCEEEEEEEE-SC-HHHHHTCSEEEECSC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCcccee-eEEEEcCCCceeeeeeee-cC-ccccCCCCEEEEEec
Confidence 58999996 99999999999999999999998653322 2211110111 11111 21 234567999998753
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.03 Score=52.68 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
...+++|+|.|+ |.+|+.+++.|...|.+|++.+|..... +.... .+++.+..+-.++.+.++|+||.+...
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~-~~~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHL-ARITE----MGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH----TTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHH----CCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 456789999995 9999999999999999999999854211 11111 123333333345567889999998753
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.051 Score=50.78 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF 150 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~ 150 (442)
+.+..+|+|.| .|.+|+.+++.|...|. +++++|.+.
T Consensus 33 kL~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 33 KIRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 34556999999 49999999999999995 888888653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.016 Score=54.61 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=30.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
||+|.|.|+ |.+|..++..|.+.|++|++++|+.
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCH
Confidence 579999995 9999999999999999999998853
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.1 Score=49.57 Aligned_cols=72 Identities=13% Similarity=-0.064 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCchhHHH-HHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc-CCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSH-LVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL-LEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~-lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~Vih~A~~ 190 (442)
.+|+|.|.|. |..|.. +++.|.++|++|++.|+..... ....+...++.+..+.-.+... .++|.||...|.
T Consensus 3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~~~D~~~~~~---~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFEVSGCDAKMYPP---MSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp CCCEEEEESC-CSHHHHHHHHHHHHTTCEEEEEESSCCTT---HHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred CCcEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEcCCCCcH---HHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 4679999995 778885 8999999999999999854321 1111222356666543333333 479999998774
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.12 Score=56.64 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc------------------ccccc--CCC--ceeEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN------------------VMHHF--GNP--NFELIRH 171 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~------------------~~~~~--~~~--~v~~~~~ 171 (442)
...+|+|.|+ |.+|+++++.|+..|. +++++|...-..... ....+ -++ .+..+..
T Consensus 26 ~~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~ 104 (1015)
T 3cmm_A 26 QTSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDS 104 (1015)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECCC
T ss_pred hcCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEecC
Confidence 4458999995 8899999999999996 888887542111100 00001 012 3444444
Q ss_pred cccccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 172 D~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
++....+.++|+||.+.. .|+..-..|.++|.+.++.||..++.+.+|
T Consensus 105 ~l~~~~l~~~DvVv~~~d----------------~~~~~r~~ln~~c~~~~iplI~~~~~G~~G 152 (1015)
T 3cmm_A 105 LDDVTQLSQFQVVVATDT----------------VSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015)
T ss_dssp CCCSTTGGGCSEEEECTT----------------SCHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred CCCHHHHhcCCEEEEcCC----------------CCHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 555556678999996531 144455567889999999999888766554
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.026 Score=52.60 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++++|+|+ |..|+.++..|.+.|. +|++..|.... .+.+.. .+.....+-.+. + ++|+|||+...
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~k-a~~La~-----~~~~~~~~~l~~-l-~~DivInaTp~ 188 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEK-TSEIYG-----EFKVISYDELSN-L-KGDVIINCTPK 188 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHH-HHHHCT-----TSEEEEHHHHTT-C-CCSEEEECSST
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHH-----hcCcccHHHHHh-c-cCCEEEECCcc
Confidence 45679999996 8999999999999998 89999885432 222221 222333322223 4 89999998753
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.047 Score=50.17 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=43.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCe-EEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~-V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+|+|.|.|+ |.+|+.++..|.+.|++ |.+.+|+.... +...... ++... .| .++.+.++|+||-+.
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~-~~~~~~~---g~~~~-~~-~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESA-RELAQKV---EAEYT-TD-LAEVNPYAKLYIVSL 76 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHH-HHHHHHT---TCEEE-SC-GGGSCSCCSEEEECC
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHc---CCcee-CC-HHHHhcCCCEEEEec
Confidence 468999995 99999999999999998 78887743211 1111111 22221 12 234456899999875
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.022 Score=53.93 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
...||+|.|.| .|.+|..++..|.+.|++|++.+|+...... +.. .++. ..+-..+.+.++|+||-+.
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-l~~----~g~~--~~~~~~~~~~~aDvvi~~v 85 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDE-LVE----HGAS--VCESPAEVIKKCKYTIAML 85 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHH-HHH----TTCE--ECSSHHHHHHHCSEEEECC
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHH----CCCe--EcCCHHHHHHhCCEEEEEc
Confidence 44578999998 6999999999999999999999886432221 111 1222 1222333456689988765
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.2 Score=41.39 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=52.3
Q ss_pred CCEEEEEcCC---chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGA---GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
+++|.|.|++ |.+|..+++.|.+.|++|+.++- .. +.. .++..+ .++ ++....+|+++-+..
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp--~~--~~i------~G~~~y-~sl-~~l~~~vDlvvi~vp--- 86 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP--KY--EEV------LGRKCY-PSV-LDIPDKIEVVDLFVK--- 86 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT--TC--SEE------TTEECB-SSG-GGCSSCCSEEEECSC---
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECC--CC--CeE------CCeecc-CCH-HHcCCCCCEEEEEeC---
Confidence 4589999998 89999999999999998766642 11 111 122211 122 223346898886531
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEe
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~i 228 (442)
-.....+++.|.+.|++.+.+
T Consensus 87 ---------------~~~~~~vv~~~~~~gi~~i~~ 107 (144)
T 2d59_A 87 ---------------PKLTMEYVEQAIKKGAKVVWF 107 (144)
T ss_dssp ---------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred ---------------HHHHHHHHHHHHHcCCCEEEE
Confidence 234556788888888854433
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.035 Score=51.51 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=47.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+++|+|.|+ |.+|+.++..|.+.|.+|++.+|+.+. .+.+... .++.... + ..+.+.++|+||++...
T Consensus 127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~-~~~l~~~---~g~~~~~-~-~~~~~~~aDiVi~atp~ 196 (275)
T 2hk9_A 127 VKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEK-AIKLAQK---FPLEVVN-S-PEEVIDKVQVIVNTTSV 196 (275)
T ss_dssp GGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHH-HHHHTTT---SCEEECS-C-GGGTGGGCSEEEECSST
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHH-HHHHHHH---cCCeeeh-h-HHhhhcCCCEEEEeCCC
Confidence 34679999995 999999999999999999998875321 1112111 1233221 2 23456689999998764
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.097 Score=53.23 Aligned_cols=101 Identities=9% Similarity=0.117 Sum_probs=64.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc----------c------------ccccccCCCceeEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK----------E------------NVMHHFGNPNFELIRHDV 173 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~----------~------------~~~~~~~~~~v~~~~~D~ 173 (442)
.+|+|.|+ |.+|+++++.|+..|. +++++|...-... + .+........+..+..++
T Consensus 33 ~~VlvvG~-GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~~ 111 (531)
T 1tt5_A 33 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESP 111 (531)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSCH
T ss_pred CeEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 48999995 8899999999999996 8888875421100 0 000000112334444433
Q ss_pred c------ccccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 174 V------EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 174 ~------~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
. ...+.++|+||.+. .|...-..+.++|.+.++.||..++.+.+|
T Consensus 112 ~~~~~~~~~~~~~~DvVi~~~-----------------d~~~~r~~ln~~c~~~~iplI~~~~~G~~G 162 (531)
T 1tt5_A 112 ENLLDNDPSFFCRFTVVVATQ-----------------LPESTSLRLADVLWNSQIPLLICRTYGLVG 162 (531)
T ss_dssp HHHHHSCGGGGGGCSEEEEES-----------------CCHHHHHHHHHHHHHTTCCEEEEEEETTEE
T ss_pred chhhhhhHHHhcCCCEEEEeC-----------------CCHHHHHHHHHHHHHcCCCEEEEEecCCeE
Confidence 2 23566799999874 233344456788999998999988877665
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.011 Score=56.09 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC-CCCccccccccCCCceeEEeccccccccCCCCEEEE
Q 013467 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 109 ~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih 186 (442)
+..+...+|+|.|.| .|.+|..++..|.+.|+ +|++.+|+. ....+.... .++.. .+-..+.+.++|+||-
T Consensus 17 ~~~~~~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~g~~~--~~~~~e~~~~aDvVi~ 89 (312)
T 3qsg_A 17 NLYFQSNAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE----LGVSC--KASVAEVAGECDVIFS 89 (312)
T ss_dssp --------CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH----TTCEE--CSCHHHHHHHCSEEEE
T ss_pred cccccCCCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH----CCCEE--eCCHHHHHhcCCEEEE
Confidence 333445578999999 69999999999999999 999998852 122121111 12221 2222334567899997
Q ss_pred ecc
Q 013467 187 LAC 189 (442)
Q Consensus 187 ~A~ 189 (442)
+..
T Consensus 90 ~vp 92 (312)
T 3qsg_A 90 LVT 92 (312)
T ss_dssp CSC
T ss_pred ecC
Confidence 653
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.028 Score=51.51 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.+ +++|.|+ |..|+.++..|.+.|. +|++.+|.... .+.+.. .+.....+-..+.+.++|+|||+..
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~k-a~~la~-----~~~~~~~~~~~~~~~~aDiVInatp 175 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIER-AKALDF-----PVKIFSLDQLDEVVKKAKSLFNTTS 175 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTCCS-----SCEEEEGGGHHHHHHTCSEEEECSS
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHH-----HcccCCHHHHHhhhcCCCEEEECCC
Confidence 45 8999995 9999999999999998 89999985322 122211 1122233333345678999999764
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=56.31 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=45.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec---cccccc---c--CCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DVVEPL---L--LEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---D~~~~~---~--~~~d~Vih~A 188 (442)
.+|+|+||+|.||...+..+...|.+|++++++.... +... .+... .+++. |..+.. . .++|+||+++
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~-~~Ga~--~~~~~~~~~~~~~v~~~~~~~g~D~vid~~ 241 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI-ALLK-DIGAA--HVLNEKAPDFEATLREVMKAEQPRIFLDAV 241 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH-HHHH-HHTCS--EEEETTSTTHHHHHHHHHHHHCCCEEEESS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH-HcCCC--EEEECCcHHHHHHHHHHhcCCCCcEEEECC
Confidence 5899999999999999998888899999999754322 2222 12211 12222 222111 1 3699999998
Q ss_pred c
Q 013467 189 C 189 (442)
Q Consensus 189 ~ 189 (442)
|
T Consensus 242 g 242 (349)
T 3pi7_A 242 T 242 (349)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.011 Score=56.09 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCc-eeEEeccccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN-FELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.+.+|+|+||+|.+|...+..+...|.+|+++++.. +.+ ....+.... ++..+.|...+.+.++|+||.+.|
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~--~~~-~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR--NHA-FLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH--HHH-HHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc--hHH-HHHHcCCCEEEeCCCcchhhhhccCCCEEEECCC
Confidence 456899999999999999999988999999887531 222 222222211 111112212234468999999886
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.17 Score=52.35 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccc------------------cc--CCC--ceeEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMH------------------HF--GNP--NFELIRHD 172 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~------------------~~--~~~--~v~~~~~D 172 (442)
..+|+|.|+ |.||+++++.|+..|. +++++|...-......+. .+ -++ .+..+..+
T Consensus 17 ~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 17 GGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred cCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 348999996 9999999999999996 888988653111100000 00 112 33444444
Q ss_pred ccc-----cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 173 VVE-----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 173 ~~~-----~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
+.+ ..+.++|+||.+. -|+..-..+-+.|.+.++.+|..++.+.+|
T Consensus 96 i~~~~~~~~~~~~~DlVvda~-----------------Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G 146 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNAL-----------------DNRAARNHVNRMCLAADVPLIESGTAGYLG 146 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECC-----------------SCHHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred cchhhhhHhhhcCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEEEecccc
Confidence 432 3456789999864 234444556778888888888777665444
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=52.12 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEE-EeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIV-VDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~-l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
++||+|.|.| .|.+|..++..|.+.|++|++ .+|+.+. .+.+.... ++.... +. .+.+.++|+||-+.
T Consensus 21 m~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~-~~~l~~~~---g~~~~~-~~-~~~~~~aDvVilav 89 (220)
T 4huj_A 21 QSMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPAS-LSSVTDRF---GASVKA-VE-LKDALQADVVILAV 89 (220)
T ss_dssp GGSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGG-GHHHHHHH---TTTEEE-CC-HHHHTTSSEEEEES
T ss_pred hcCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHH-HHHHHHHh---CCCccc-Ch-HHHHhcCCEEEEeC
Confidence 3467999999 799999999999999999998 6664322 22221111 111221 11 22367799999775
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.2 Score=45.02 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=52.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEE-EEeCCCCCCccccccccCCCceeEEecccccccc-CCCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVI-VVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL-LEVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~-~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~Vih~A~~~~~~ 194 (442)
|+|.|.|. |.+|+.+++.|.+.|++|. +.++.. +.+ . ...|. ++.+ .++|+||-+...
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~--~~~---------~---~~~~~-~~l~~~~~DvVv~~~~~---- 60 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRG--EHE---------K---MVRGI-DEFLQREMDVAVEAASQ---- 60 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC--CCT---------T---EESSH-HHHTTSCCSEEEECSCH----
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCc--chh---------h---hcCCH-HHHhcCCCCEEEECCCH----
Confidence 48999996 9999999999998899985 555531 111 0 12222 2334 589999987641
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecC
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
- ....++..+.+.|+.+|..|+.
T Consensus 61 -------------~-~~~~~~~~~l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 61 -------------Q-AVKDYAEKILKAGIDLIVLSTG 83 (236)
T ss_dssp -------------H-HHHHHHHHHHHTTCEEEESCGG
T ss_pred -------------H-HHHHHHHHHHHCCCcEEEECcc
Confidence 0 1223345666778877766654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=57.21 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|+|+|+ |.+|+.+++.|...|. +|++.+|..... +.+...+ +.+.+..+-....+.++|+||.+.+
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra-~~la~~~---g~~~~~~~~l~~~l~~aDvVi~at~ 236 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERA-VELARDL---GGEAVRFDELVDHLARSDVVVSATA 236 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHH-HHHHHHH---TCEECCGGGHHHHHHTCSEEEECCS
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHc---CCceecHHhHHHHhcCCCEEEEccC
Confidence 35679999997 9999999999999998 899998853211 1122221 1223222223344568999999875
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=57.66 Aligned_cols=67 Identities=16% Similarity=0.368 Sum_probs=49.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~ 187 (442)
.|+|+|.|+ |-+|+++++.|.++||+|++++++. +..........+..+.+|..++ -..++|.+|-+
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~----~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDG----DRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCH----HHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCH----HHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 479999995 9999999999999999999998742 2222111223567888988765 24579998854
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.13 Score=49.05 Aligned_cols=66 Identities=29% Similarity=0.246 Sum_probs=48.1
Q ss_pred cCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 111 GLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 111 ~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.....+|+|.|.| .|-||+.+++.|...|.+|++.+|..... .. +...+-.++.+.++|+|+.+..
T Consensus 166 ~~~l~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------~~--~~~~~sl~ell~~aDvVil~vP 231 (340)
T 4dgs_A 166 GHSPKGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTLSG----------VD--WIAHQSPVDLARDSDVLAVCVA 231 (340)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCTT----------SC--CEECSSHHHHHHTCSEEEECC-
T ss_pred cccccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCcccc----------cC--ceecCCHHHHHhcCCEEEEeCC
Confidence 3456789999999 69999999999999999999998854321 01 1122334556778999997653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.025 Score=54.68 Aligned_cols=71 Identities=25% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec----cccccccCCCCEEEEeccc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH----DVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----D~~~~~~~~~d~Vih~A~~ 190 (442)
.+.+|+|+|+ |.+|...+..+...|.+|++++++.... +.... +... .+++. |..+....++|+||.+.|.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~-~~~~~-lGa~--~v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR-EDAMK-MGAD--HYIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHH-HTCS--EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHH-cCCC--EEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 4569999999 9999999988888899999999754332 22222 2211 12222 2222222579999999873
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.21 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCEEEEEcCC---chhHHHHHHHHHhCCCeEEEEeC
Q 013467 116 GLRIVVTGGA---GFVGSHLVDRLIARGDSVIVVDN 148 (442)
Q Consensus 116 ~~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~r 148 (442)
+++|.|.|++ |-+|..+++.|++.|++|+.++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp 48 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSP 48 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCC
Confidence 4479999998 88999999999999999888765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.024 Score=54.96 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+.+|+|+|| |.+|..++..+...|.+|++++++.
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 679999999 9999999999988999999999854
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.032 Score=52.64 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.+|+|.|.| .|.+|..+++.|.+.|++|++.+|+...... +... ++ ...+-..+.+.++|+||-+.
T Consensus 8 ~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-~~~~----g~--~~~~~~~e~~~~aDvVi~~v 73 (306)
T 3l6d_A 8 FEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAA-LVAA----GA--HLCESVKAALSASPATIFVL 73 (306)
T ss_dssp CSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHH-HHHH----TC--EECSSHHHHHHHSSEEEECC
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHC----CC--eecCCHHHHHhcCCEEEEEe
Confidence 356899998 7999999999999999999999885332111 1111 11 11222334556789999765
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.049 Score=51.01 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=49.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|+|.| .|.+|+.+++.|...|.+|++.+|..... +... . .+++.+..+-.++.+.++|+|+.+..
T Consensus 152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~-~~~~-~---~g~~~~~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 152 TIHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLL-ARIA-E---MGMEPFHISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHH-H---TTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred CCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHH-H---CCCeecChhhHHHHhcCCCEEEECCC
Confidence 34567999999 59999999999999999999999853211 1111 1 12344433334556788999998864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.016 Score=54.08 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=44.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
||+|.|.| .|.+|..++..|.+.|++|++.+|+...... +... ++. ..+-..+.+.++|+||-+.
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~-~~~~----g~~--~~~~~~~~~~~advvi~~v 65 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAP-LVAL----GAR--QASSPAEVCAACDITIAML 65 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHH-HHHH----TCE--ECSCHHHHHHHCSEEEECC
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHH-HHHC----CCe--ecCCHHHHHHcCCEEEEEc
Confidence 46899998 7999999999999999999999986432221 1111 111 1222333455689988765
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.16 Score=45.28 Aligned_cols=31 Identities=13% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVV 146 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l 146 (442)
-|+++|.|++|-+|+.+++....+|+++...
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~ 42 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKGHELVLK 42 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cceeEEEEecCHHHHHHHHHHhCCCCEEEEE
Confidence 3589999999999999988776778876654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.014 Score=56.03 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVV 146 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l 146 (442)
.+.+|+|+||+|.+|...+..+...|.+|+++
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~ 181 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT 181 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 45689999999999999999999999999988
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.022 Score=54.67 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+.+|+|+||+|.+|...+..+...|.+|++++++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~ 184 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASR 184 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45699999999999999999998899999999874
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.034 Score=52.31 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=44.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
+|+|.|.| .|.+|..++..|.+.|++|++.+|+..... .+.. .+.... .+-..+.+.++|+||-+.
T Consensus 7 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-~~~~----~g~~~~-~~~~~e~~~~aDvvi~~v 72 (303)
T 3g0o_A 7 DFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQACA-NLLA----EGACGA-AASAREFAGVVDALVILV 72 (303)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHH----TTCSEE-ESSSTTTTTTCSEEEECC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHH-HHHH----cCCccc-cCCHHHHHhcCCEEEEEC
Confidence 46899998 699999999999999999999988533211 1111 111111 222334567789999765
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.15 Score=48.48 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~ 150 (442)
+..+|+|.|+ |.+|+++++.|+..|. +++++|+..
T Consensus 33 ~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 33 KNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred hCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 4458999995 9999999999999996 888888753
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.065 Score=53.90 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=30.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.|+|.|.| .|++|..++..|.+.|++|++++|+.
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35899998 79999999999999999999999853
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.13 Score=48.80 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
....+++|.|.| .|-||+.+++.|...|.+|++.+|....... . . .....+-.++.+.++|+|+.+..
T Consensus 133 ~~l~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~-------~-~~~~~~~l~ell~~aDvV~l~lP 200 (324)
T 3evt_A 133 STLTGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPADH-F-------H-ETVAFTATADALATANFIVNALP 200 (324)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCTT-C-------S-EEEEGGGCHHHHHHCSEEEECCC
T ss_pred ccccCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhHh-H-------h-hccccCCHHHHHhhCCEEEEcCC
Confidence 456788999999 7999999999999999999999986432211 0 0 11233344566778999997764
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.1 Score=48.20 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
....+++++|+|+++.+|+.++..|+++|..|++..+... | ..+.+..+|+||...+.
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~--------------------~-L~~~~~~ADIVI~Avg~ 213 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK--------------------D-LSLYTRQADLIIVAAGC 213 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------C-HHHHHTTCSEEEECSSC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch--------------------h-HHHHhhcCCEEEECCCC
Confidence 3457889999999999999999999999999999865311 1 22345678999988763
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.018 Score=55.16 Aligned_cols=34 Identities=29% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+.+|+|+|| |.+|..++..+...|.+|++++++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~ 197 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIG 197 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4579999999 779999999999999999999875
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.043 Score=52.02 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCC--CCccccccccCCCceeEEecc-ccccccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFT--GRKENVMHHFGNPNFELIRHD-VVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~--~~~~~~~~~~~~~~v~~~~~D-~~~~~~~~~d~Vih~A~ 189 (442)
.+|+|.|.| .|.+|..++..|++.| ++|++.+|+.. .+.+.....+...++ .+ -..+.+.++|+||-+..
T Consensus 23 M~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~----~~~s~~e~~~~aDvVi~avp 96 (317)
T 4ezb_A 23 MMTTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV----EPLDDVAGIACADVVLSLVV 96 (317)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC----EEESSGGGGGGCSEEEECCC
T ss_pred cCCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC----CCCCHHHHHhcCCEEEEecC
Confidence 357899999 7999999999999999 99999998642 111111111111122 22 23345677999998753
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.14 Score=50.56 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.|.+|.|.| .||+|..++..|.+.||+|+++|.+
T Consensus 20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did 53 (444)
T 3vtf_A 20 HMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVN 53 (444)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 567999998 8999999999999999999999875
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.072 Score=50.00 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+++|.|.|+ |.+|..++..|++.|++|++++|+.
T Consensus 14 ~~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 14 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3568999996 9999999999999999999999864
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.032 Score=51.86 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=42.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
||+|.|.| .|.+|..++..|.+ |++|++.+|+..... ..... ++... + .++.+.++|+||.+.
T Consensus 1 M~~i~iiG-~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~-~~~~~----g~~~~--~-~~~~~~~~D~vi~~v 63 (289)
T 2cvz_A 1 MEKVAFIG-LGAMGYPMAGHLAR-RFPTLVWNRTFEKAL-RHQEE----FGSEA--V-PLERVAEARVIFTCL 63 (289)
T ss_dssp -CCEEEEC-CSTTHHHHHHHHHT-TSCEEEECSSTHHHH-HHHHH----HCCEE--C-CGGGGGGCSEEEECC
T ss_pred CCeEEEEc-ccHHHHHHHHHHhC-CCeEEEEeCCHHHHH-HHHHC----CCccc--C-HHHHHhCCCEEEEeC
Confidence 46899998 59999999999999 999999987533211 11111 12222 2 344566799999875
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.19 Score=49.92 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.7
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
+|.|.| .|++|..++..|++.||+|++.+|+..
T Consensus 10 ~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 10 RIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred EEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 799999 799999999999999999999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 442 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-119 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 6e-85 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-80 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 6e-74 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-69 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 4e-67 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-64 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-63 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 5e-62 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 8e-62 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-60 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 6e-60 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 6e-60 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-52 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 2e-49 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-43 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 1e-36 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 7e-31 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 5e-30 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 8e-30 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 1e-25 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 4e-24 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-18 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 2e-17 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 1e-15 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 8e-14 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 6e-13 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 7e-10 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 8e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 8e-06 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 1e-05 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 6e-04 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.004 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 348 bits (894), Expect = e-119
Identities = 199/306 (65%), Positives = 238/306 (77%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 62
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 63 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 122
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 123 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 182
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 357
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM P NLGNP E
Sbjct: 183 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 242
Query: 358 TMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVK 417
T+LE AQ+++ + ++I+F +DDP KRKPDI +AK +LGWEP V L +GL K +
Sbjct: 243 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 302
Query: 418 DFRQRI 423
FR+ +
Sbjct: 303 YFRKEL 308
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 262 bits (670), Expect = 6e-85
Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 35/337 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I++TGGAGF+GS +V +I D+V+ +D + G E++ + + D+ +
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 176 PLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----- 223
+ D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 224 -----RFLLTSTSEVYGDPLQHPQKET-----YWGNVNPIGVRSCYDEGKRTAETLTMDY 273
RF ST EVYGD + E + S Y K +++ L +
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333
R G+ + N YGP +++ + AL +PL +YG G Q R + +V D
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYH--FPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH 239
Query: 334 VEGLMRLME-GEHVGPFNLGNPGEFTMLELAQVVQET--------IDPNAKIEFRPNTED 384
L ++ G+ +N+G E L++ + + +I + +
Sbjct: 240 ARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPG 299
Query: 385 DPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
+ D + LGW+P + G+ K V+ +
Sbjct: 300 HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 248 bits (633), Expect = 8e-80
Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 22/319 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG------DSVIVVDNF-FTGRKENVMHHFGNPNFELIR 170
R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 171 HDVVEPLLLEV-----DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-AR 224
D+ + LL D I H A + +TNV GT +L A G R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
+ ST++VYG E+ +P+ S Y K ++ + YHR G++VRI
Sbjct: 122 VVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 285 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
R N YGP +++ FV L L +YGDG R + D G+ ++ G
Sbjct: 177 RCCNNYGPYQ--HPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGG 234
Query: 345 HVG-PFNLGNPGEFTMLELAQVVQETIDPNAK-IEFRPNTEDDPHKRKPDISRAKELLGW 402
G +++G E T EL ++ +++ + + + + + D + + LG+
Sbjct: 235 RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGY 294
Query: 403 EPKVSLRKGLPKMVKDFRQ 421
P+VS GL + V+ +R+
Sbjct: 295 RPQVSFADGLARTVRWYRE 313
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 233 bits (596), Expect = 6e-74
Identities = 79/350 (22%), Positives = 136/350 (38%), Gaps = 55/350 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDN----FFTGRKENVMH--HFGNPNFELIRH 171
++TG G GS+L + L+ +G V + F T R +++ H NP F L
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 172 DVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-- 222
D+ + L D++Y+L + +P T + +GTL +L + +G
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 223 --ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
RF STSE+YG + PQKET P RS Y K A +T++Y G+
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGMY 177
Query: 281 VRIARIFNTYGPRM--CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLM 338
+FN PR ++ A E G+ R + D V+
Sbjct: 178 ACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQW 237
Query: 339 RLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTED-------------- 384
+++ E F + ++++ + ++ + + E E
Sbjct: 238 MMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGV 297
Query: 385 ---------DPHKRKP--------DISRAKELLGWEPKVSLRKGLPKMVK 417
DP +P D ++A E LGW+P+++LR+ + +MV
Sbjct: 298 KPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVA 347
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 221 bits (563), Expect = 2e-69
Identities = 70/325 (21%), Positives = 117/325 (36%), Gaps = 36/325 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R+ + G G VGS + +L RGD +V+ L+ V
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR--------------DELNLLDSRAVHDF 49
Query: 178 LLE--VDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 233
+DQ+Y A V P I N++ N++ A + + L +S +
Sbjct: 50 FASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 109
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
Y + P E+ Y K L Y+R G + R N YGP
Sbjct: 110 YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPH 169
Query: 294 MCIDDGR-------VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH- 345
+ A A + + V+G G R F V D+ + +ME H
Sbjct: 170 DNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHE 229
Query: 346 ---------VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRA 396
+ N+G + T+ ELAQ + + + ++ F + D ++ D++R
Sbjct: 230 VWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRL 289
Query: 397 KELLGWEPKVSLRKGLPKMVKDFRQ 421
+ LGW ++SL GL + F +
Sbjct: 290 HQ-LGWYHEISLEAGLASTYQWFLE 313
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 215 bits (548), Expect = 4e-67
Identities = 78/332 (23%), Positives = 139/332 (41%), Gaps = 27/332 (8%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV------MHHFGNPN 165
L + ++TG AGF+GS+L++ L+ V+ +DNF TG + N+ + N
Sbjct: 12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN 71
Query: 166 FELIRHDVVEPLLL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 220
F+ I+ D+ VD + H A S +P+ + TN+ G LNML A+
Sbjct: 72 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 131
Query: 221 VG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
F ++S YGD P+ E G S Y K E + R G
Sbjct: 132 AKVQSFTYAASSSTYGDHPGLPKVEDTIGK-----PLSPYAVTKYVNELYADVFSRCYGF 186
Query: 280 EVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337
R FN +G R + V+ + + ++ + + + GDG+ +R F ++ + V+
Sbjct: 187 STIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 246
Query: 338 MRLME---GEHVGPFNLGNPGEFTMLELAQVVQETIDPNA-----KIEFRPNTEDDPHKR 389
+ +N+ G ++ +L +++ + N + +R E D
Sbjct: 247 LLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHS 306
Query: 390 KPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
DIS+A +LLG+ PK + G+ + +
Sbjct: 307 LADISKAAKLLGYAPKYDVSAGVALAMPWYIM 338
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 207 bits (527), Expect = 5e-64
Identities = 77/343 (22%), Positives = 135/343 (39%), Gaps = 39/343 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVE 175
R++VTGG+G++GSH +L+ G VI++DN ++ + + G + + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 176 PLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLL 227
L+ +D + H A + P++ NV GTL ++ + F+
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH-RGAGVEVRIARI 286
+S++ VYGD + P E++ +S Y + K E + D + + R
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTP----QSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 287 FNTYGPRMCIDDG-------RVVSNFVAQAL--RKEPLTVYG------DGKQTRSFQFVS 331
FN G D G + ++AQ R++ L ++G DG R + V
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237
Query: 332 DLVEGLMRLMEGEH----VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPH 387
DL +G + ME V +NLG ++L++ + F P E D
Sbjct: 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 388 KRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFGDHKEG 430
D S+A L W +L + + H +G
Sbjct: 298 AYWADASKADRELNWRVTRTLDEMAQDTWHWQSR-----HPQG 335
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 204 bits (520), Expect = 8e-63
Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 19/321 (5%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
I+VTGGAGF+GS+ V + V V+D + + EL+ D+ +
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63
Query: 176 PLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L++ D I H A + + +P I TN +GT +L A++ RF ST
Sbjct: 64 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123
Query: 231 SEVYGD-------PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
EVYGD P + S Y K ++ + + R GV+ I
Sbjct: 124 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATI 183
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343
+ N YGP I+ + + + L +YG+GK R + +D G+ ++
Sbjct: 184 SNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTK 241
Query: 344 EHVGPFNLGNPGEFTM-LELAQVVQETI-DPNAKIEFRPNTEDDPHKRKPDISRAKELLG 401
+G L E+ +++ E + P + + + D S+ ++ LG
Sbjct: 242 GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELG 301
Query: 402 WEPKVS-LRKGLPKMVKDFRQ 421
W P+ + +GL + ++ +
Sbjct: 302 WTPQFTDFSEGLEETIQWYTD 322
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 203 bits (516), Expect = 5e-62
Identities = 83/319 (26%), Positives = 138/319 (43%), Gaps = 14/319 (4%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWK---KNEHMTEDMFCDEFHLVDLRVM 70
Query: 175 EPLLLEVDQIYHLACPASP----VHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L + + H+ A+ + N + N + + NM+ A+ G RF S
Sbjct: 71 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 130
Query: 230 TSEVYG--DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y L+ + P + + K E L Y++ G+E RI R
Sbjct: 131 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFH 190
Query: 288 NTYGPR---MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344
N YGP + + + ++GDG QTRSF F+ + VEG++RL + +
Sbjct: 191 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 250
Query: 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEP 404
P N+G+ +M E+A++V + I P E R D + KE LGW P
Sbjct: 251 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRG-RNSDNNLIKEKLGWAP 309
Query: 405 KVSLRKGLPKMVKDFRQRI 423
+ L++GL +++I
Sbjct: 310 NMRLKEGLRITYFWIKEQI 328
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 202 bits (513), Expect = 8e-62
Identities = 69/344 (20%), Positives = 129/344 (37%), Gaps = 46/344 (13%)
Query: 121 VTGGAGFVGSHLVDRLIARGDSVIVVDN----FFTGRKENVMHH---FGNPNFELIRHDV 173
+TG G GS+L + L+ +G V + F TGR E++ + N +L D+
Sbjct: 6 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDL 65
Query: 174 VEPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---- 222
+ L + +IY+L + T + VGTL +L K G
Sbjct: 66 TDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINS 125
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
+F STSE+YG + PQKET P RS Y K A + +++ +
Sbjct: 126 VKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAV 180
Query: 283 IARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
+FN PR + ++ + L + G+ R + D VE + +
Sbjct: 181 NGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLM 240
Query: 341 MEGEHVGPFNLGNPGEFTM---------------------LELAQVVQETIDPNAKIEFR 379
++ + F + ++ +ET + ++ +
Sbjct: 241 LQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLK 300
Query: 380 PNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
+ + D ++AK+ L W+P+V+ + + +MV + +
Sbjct: 301 YYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 198 bits (502), Expect = 3e-60
Identities = 77/335 (22%), Positives = 131/335 (39%), Gaps = 32/335 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVVEP 176
++++TGG GF+GS+L +++G +IV DN G +N+ NFE + D+
Sbjct: 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 177 LLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--KRVGARFLL 227
+ D +HLA + NP + NV GTLN+L +
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 228 TSTSEVYGDPLQHPQKETYWGNVN-----------PIGVRSCYDEGKRTAETLTMDYHRG 276
+ST++VYGD Q+ ET + S Y K A+ +DY R
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 181
Query: 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFV------AQALRKEPLTVYGDGKQTRSFQFV 330
G+ + R + YG R + + + +P T+ G+GKQ R
Sbjct: 182 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241
Query: 331 SDLVEGLMRLME-----GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDD 385
D++ + + ++LEL +++++ + + + P E D
Sbjct: 242 EDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESD 301
Query: 386 PHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 420
DI + + W PKVS + G+ KM
Sbjct: 302 QRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTS 336
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 197 bits (500), Expect = 6e-60
Identities = 70/342 (20%), Positives = 124/342 (36%), Gaps = 36/342 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH--HFGNPNFELIRHDVVEP 176
++VTGGAG++GSH V LI G +V DN ++V + D+ +
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 177 LLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLT 228
LE +D + H A + P++ N++GT+ +L L ++ F+ +
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARI 286
S++ VYGD + P P+G + Y K E + D + + I R
Sbjct: 124 SSATVYGDATRFPNMIPIPEE-CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRY 182
Query: 287 FNTYGPRMCIDDG--------RVVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVEGL 337
FN G G ++ A+ R+E L ++GD +R + D + +
Sbjct: 183 FNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVV 242
Query: 338 MRLMEGEHVGP--------------FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTE 383
+NLG+ T+ E+ + + +
Sbjct: 243 DLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRA 302
Query: 384 DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIFG 425
D RAK L W+ ++ + + K + FG
Sbjct: 303 GDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 344
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 196 bits (498), Expect = 6e-60
Identities = 62/322 (19%), Positives = 127/322 (39%), Gaps = 21/322 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVVEP 176
+VTG G G++L L+ +G V + + + + + + D+ +
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61
Query: 177 LLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLL 227
+ + ++Y+LA + PV T + +G ++L ++ RF
Sbjct: 62 CSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQ 121
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
STSE++G Q E P RS Y K +T++Y G+ +F
Sbjct: 122 ASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILF 176
Query: 288 NTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345
N P I+ +V L K+ G+ R + F D VE + +++ +
Sbjct: 177 NHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 236
Query: 346 VGPFNLGNPGEFTMLELAQVVQETIDPNAK----IEFRPNTEDDPHKRKPDISRAKELLG 401
+ + T+ ++ Q+ E + + + I+ + + ++A+ +LG
Sbjct: 237 ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG 296
Query: 402 WEPKVSLRKGLPKMVKDFRQRI 423
W+P+ SL + + MV+ +R+
Sbjct: 297 WKPRTSLDELIRMMVEADLRRV 318
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 178 bits (451), Expect = 1e-52
Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 38/339 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--------MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLEVDQI-------YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY-HRGAGVEV 281
+ L+ S+S +PQ G + Y + K E + D
Sbjct: 124 VKNLVFSSSATVY---GNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA 180
Query: 282 RIARIFNTYGPRMCIDDG-------RVVSNFVAQAL--RKEPLTVYG------DGKQTRS 326
+ R FN G G + +V+Q R+E L V+G DG R
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 327 FQFVSDLVEGLMRLMEGEHVGP----FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT 382
+ V DL +G + + +NLG +++L++ Q +++ +
Sbjct: 241 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR 300
Query: 383 EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
E D + S A+E LGW + L + + + +Q
Sbjct: 301 EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQ 339
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 169 bits (428), Expect = 2e-49
Identities = 70/329 (21%), Positives = 121/329 (36%), Gaps = 30/329 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDN----FFTGRKENVM---HHFGNPNFELIR 170
++TG G GS+L + L+ +G V + F T R ++ H+ +L
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 171 HDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 223
D+ + L D++Y+LA + P T G L +L +
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 224 RFL-----LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
+ S PQ ET P RS Y K A T++Y G
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAYG 177
Query: 279 VEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 336
+ +FN PR + ++ + + G+ + +R + F D VE
Sbjct: 178 LFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEA 237
Query: 337 LMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAK----IEFRPNTEDDPHKRKPD 392
+ +++ E + + T+ E V + N K I+ R + + D
Sbjct: 238 MWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGD 297
Query: 393 ISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421
S+AKE+LGW+P+V K + MV + +
Sbjct: 298 ASKAKEVLGWKPQVGFEKLVKMMVDEDLE 326
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 153 bits (386), Expect = 5e-43
Identities = 73/382 (19%), Positives = 130/382 (34%), Gaps = 73/382 (19%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKEN------------------VM 158
R++V GGAG++GSH V L+ SV++VD+ ++
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 159 HHFGNPNFELIRHDVVEPLLLE--------VDQIYHLACPASPVHYKFNPVKTIKTNVVG 210
+ + L DV L +D + H+ + +P+K NVVG
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 211 TLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV---RSCYDEGKRTAE 267
L +L ++ S+S T ++ S Y E K AE
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDG-------RVVSNFVAQALRK-------- 312
+ D G++ R FN G D G ++ + + +
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLT 243
Query: 313 --------EPLTVYG------DGKQTRSFQFVSDLVEGLMRLMEGEHV----------GP 348
+ + ++G DG R + V DL + ++
Sbjct: 244 IHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSV 303
Query: 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSL 408
FNLG +++ E+ +V ++T + E DP +A+E+LGW+PK
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDT 363
Query: 409 RKGLPKMVKDFRQRIFGDHKEG 430
+ + + F++ H G
Sbjct: 364 LEAIMETSWKFQR----THPNG 381
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 135 bits (338), Expect = 1e-36
Identities = 75/341 (21%), Positives = 137/341 (40%), Gaps = 39/341 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
R+++ G GF+G+HL +RL+ V +D +P+F + D+
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----LNHPHFHFVEGDISIH 57
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 231 SEVYGDPLQHPQKETYWGNVNPIGV--RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
SEVYG E + + R Y K+ + + Y G++ + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 289 TYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342
GPR+ I R ++ + + P+ + GKQ R F + D +E L R++E
Sbjct: 178 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE 237
Query: 343 GEHVG----PFNLGNPGEFTML-ELAQVVQETIDPNAKIEFRPNTE-------------- 383
N+GNP + EL +++ + + + P
Sbjct: 238 NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKG 297
Query: 384 -DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423
D RKP I A L WEPK+ +++ + + + F + +
Sbjct: 298 YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 118 bits (295), Expect = 7e-31
Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 12/307 (3%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDS-VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
I+VTGGAGF+GS++V L +G + ++VVDN G K + N + + D + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+ + A L R
Sbjct: 61 MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE--IPFLYASSAA 118
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
+ + + + Y K + A ++ R FN YGPR
Sbjct: 119 TYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK 178
Query: 298 DGRVVSNFVAQALRKEPL---TVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354
F G R F +V D+ + + +E G FNLG
Sbjct: 179 GSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTG 238
Query: 355 GEFTMLELAQVVQETIDPNAKIEFRPNTED----DPHKRKPDISRAKELLGWEPKVSLRK 410
+ +A +IE+ P + + D++ + +P ++ +
Sbjct: 239 RAESFQAVADATLA-YHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297
Query: 411 GLPKMVK 417
G+ + +
Sbjct: 298 GVTEYMA 304
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 117 bits (292), Expect = 5e-30
Identities = 54/332 (16%), Positives = 103/332 (31%), Gaps = 32/332 (9%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+G ++VTG GFV SH+V++L+ G V + N+ + VV
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPGRFETAVV 68
Query: 175 EPLL------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
E +L + +A AS V + + + + GTLN L A + RF+
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFV 128
Query: 227 LTSTSEVYGDPLQHPQKETY---------------WGNVNPIGVRSCYDEGKRTAETL-- 269
LTS++ P + + +P Y K AE
Sbjct: 129 LTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAW 188
Query: 270 TMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329
+ T G + ++ +L ++ + +
Sbjct: 189 KFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVS 248
Query: 330 VSDLVEGLMRLME-GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHK 388
D+ + + + G G F + ++ P+ +
Sbjct: 249 AVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLY-PSKTFPADF-PDQGQDL 306
Query: 389 RKPDISRAKEL---LGWEPKVSLRKGLPKMVK 417
K D + + E+ LG S+ + + +V
Sbjct: 307 SKFDTAPSLEILKSLGRPGWRSIEESIKDLVG 338
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 116 bits (291), Expect = 8e-30
Identities = 56/328 (17%), Positives = 99/328 (30%), Gaps = 23/328 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+G R+ VTG GF G L L G +V + D+
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 66
Query: 175 EPLLLEVDQ-------IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----AKRVGA 223
+ L ++H+A PV+T TNV+GT+ +L
Sbjct: 67 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 126
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM---DYHRGAGVE 280
+ + + + ++ G +P E ++ + + G
Sbjct: 127 VNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTA 186
Query: 281 VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340
V R N G D R+V + + + +P+ + + L L+
Sbjct: 187 VATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLA 245
Query: 341 MEGEHVGPFNLGNPGEFTMLELAQ-------VVQETIDPNAKIEFRPNTED-DPHKRKPD 392
+ G A + + A + N + H K D
Sbjct: 246 QKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLD 305
Query: 393 ISRAKELLGWEPKVSLRKGLPKMVKDFR 420
S+AK LGW P+ +L L +V +
Sbjct: 306 CSKAKMQLGWHPRWNLNTTLEYIVGWHK 333
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 105 bits (262), Expect = 1e-25
Identities = 69/372 (18%), Positives = 110/372 (29%), Gaps = 65/372 (17%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM----------------- 158
G R++V GG G+ G L + V +VDN ++ +
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 159 -HHFGNPNFELIRHDVVEPLLLE----------VDQIYHLACPASPVHYKFNPVKTIKTN 207
+ EL D+ + L V + + V T N
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 208 VVGTLNMLGLAKR-------------VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254
V+GTLN+L K E Y + + +T
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 255 VRS------------CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVV 302
A L G + G +
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 303 SNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-MRLMEGEHVGPFNLGNPG--EFTM 359
+ F QA PLTVYG G QTR + + D V+ + + + G F + N +F++
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 300
Query: 360 LELAQVVQET-----IDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPK 414
ELA +V + +D P E + H ++ E LG EP L
Sbjct: 301 NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDS 359
Query: 415 MV---KDFRQRI 423
++ F+ R+
Sbjct: 360 LLNFAVQFKDRV 371
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 99.1 bits (245), Expect = 4e-24
Identities = 45/310 (14%), Positives = 95/310 (30%), Gaps = 39/310 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I++TG G +G + +L + VI D + ++ V
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ---------------DLDITNVLAVNKF 47
Query: 178 LLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235
E + + + A + + K N +G N+ A VGA + ST V+
Sbjct: 48 FNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFD 107
Query: 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
+ P E N ++ + + + + I R YG
Sbjct: 108 GEAKEPITEFDEVNPQSAYGKTKLEGEN---------FVKALNPKYYIVRTAWLYGDGNN 158
Query: 296 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPG 355
+ + L V D Q + DL ++++++ ++ G F+ G
Sbjct: 159 FVKTMINLGK-----THDELKVVHD--QVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKG 211
Query: 356 EFTMLELAQVVQETIDPNAKIEFRPNTEDD-----PHKRKPDISRAKELLGWEPKVSLRK 410
+ + A + + K+ E P + G + ++
Sbjct: 212 ICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKE 270
Query: 411 GLPKMVKDFR 420
L + + +
Sbjct: 271 SLKEYIDLLQ 280
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 83.3 bits (204), Expect = 2e-18
Identities = 29/269 (10%), Positives = 77/269 (28%), Gaps = 30/269 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---RKENVMHHFGNPNFELIRHDVV 174
R+++ GG G++G +V+ I+ G V+ K ++ +F +LI +
Sbjct: 5 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 64
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
+ L ++ + + + + + + + L S +
Sbjct: 65 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPSEFGMD 119
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
D ++H + + A + G
Sbjct: 120 PDIMEHALQPGSI---------------TFIDKRKVRRAIEAASIPYTYVSSNMFAGYF- 163
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP---FNL 351
G + ++ + +YGDG + D+ ++ ++ +
Sbjct: 164 ---AGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIR 220
Query: 352 GNPGEFTMLELAQVVQETIDPNAKIEFRP 380
+ E+ Q+ + + N +
Sbjct: 221 PPMNILSQKEVIQIWERLSEQNLDKIYIS 249
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 80.6 bits (197), Expect = 2e-17
Identities = 30/270 (11%), Positives = 75/270 (27%), Gaps = 37/270 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG----RKENVMHHFGNPNFELIRHDV 173
RI++ G G++G H+ + G ++ T K ++ F ++
Sbjct: 5 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS- 63
Query: 174 VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233
+D L V + V +++ + RF +
Sbjct: 64 -------IDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGND 116
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
+ ++ + + G+ G
Sbjct: 117 VDNVHAVEPAKSVFEVKAKV-----------------RRAIEAEGIPYTYVSSNCFAGYF 159
Query: 294 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVG---PFN 350
+ R ++ A ++ + + GDG F D+ ++ ++ +
Sbjct: 160 L-----RSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYL 214
Query: 351 LGNPGEFTMLELAQVVQETIDPNAKIEFRP 380
++ EL + ++ ID + + P
Sbjct: 215 RLPANTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 75.0 bits (182), Expect = 1e-15
Identities = 47/317 (14%), Positives = 92/317 (29%), Gaps = 42/317 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
I++ G G VG L L G+ +I +D + N + + V +
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEFCGDFS------NPKGVAETVRK-- 52
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
L D I + A + + P N + A GA + ST V+
Sbjct: 53 -LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGT 111
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
P +ET + + ++ K + + + R + ++ G
Sbjct: 112 GDIPWQETDATSPLNVYGKTKLAGEKA------LQDNCPKHLIFRTSWVYAGKGNNFAKT 165
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL-----MRLMEGEHVGPFNLG 352
R+ T+ Q + L + + L + E G ++L
Sbjct: 166 MLRLAKERQ---------TLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLV 216
Query: 353 NPGEFTMLELAQVVQETID----PNAKIEFRPNTEDD-------PHKRKPDISRAKELLG 401
G T + A +V + A E P + + + +
Sbjct: 217 AGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276
Query: 402 WEPKVSLRKGLPKMVKD 418
G+ +M+ +
Sbjct: 277 LILP-QWELGVKRMLTE 292
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (165), Expect = 8e-14
Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 42/232 (18%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
+I + G G G + + + G V V+ + ++++ V+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSEVYGD 236
+ D + L + + G N++ K G + +++ + D
Sbjct: 65 VAGQDAVIVLLGTRNDLSPTTV-------MSEGARNIVAAMKAHGVDKVVACTSAFLLWD 117
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
P + P + R +G++
Sbjct: 118 PTKVPPRLQAV----------------TDDHIRMHKVLRESGLKYVAVMP---------- 151
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVG 347
+ TV DG+ DL ++R + E+ G
Sbjct: 152 -------PHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDG 196
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 66.4 bits (160), Expect = 6e-13
Identities = 32/253 (12%), Positives = 69/253 (27%), Gaps = 17/253 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP-NFELIRHDVVEP 176
++VTG +G G + +L D + + + + + + ++ D + P
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP 64
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 236
+D + L + F+P K + + + ++V G
Sbjct: 65 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV 124
Query: 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 296
N + + + + Y +G I R
Sbjct: 125 KHIVVVGSMGGTNPDH-PLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE--- 180
Query: 297 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME-GEHVGP-FNLGNP 354
G V V + + +D+ E ++ + E F+LG+
Sbjct: 181 --GGVRELLVGKDDE--------LLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSK 230
Query: 355 GEFTMLELAQVVQ 367
E T
Sbjct: 231 PEGTSTPTKDFKA 243
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 58.1 bits (139), Expect = 7e-10
Identities = 28/286 (9%), Positives = 61/286 (21%), Gaps = 39/286 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
I V G G G+ L+ A G V + + + PN L + +
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH--SLKGLIAEELQAIPNVTLFQGPLLNNV 62
Query: 174 --VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
++ L + + GT+ + +
Sbjct: 63 PLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPA 122
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
P + + V Y+ + F+
Sbjct: 123 VPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPD 182
Query: 291 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFN 350
P +D V + Q + P + G
Sbjct: 183 IPLPWLDAEHDVGPALLQIFKDGP----------------------------QKWNGHRI 214
Query: 351 LGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRA 396
+ +++ + N ++ + + + P R
Sbjct: 215 ALTFETLSPVQVCAAFSRAL--NRRVTYVQVPKVEIKVNIPVGYRE 258
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.5 bits (111), Expect = 8e-07
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF 161
R+++ G G G HL+DR+++ V+ RK H
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVIA---PARKALAEHPR 44
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 8e-06
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH 171
+ + + + G +G G L+ ++ +G V GR++ N
Sbjct: 10 FRMQNKSVFILGASGETGRVLLKEILEQGLFSKVT---LIGRRKLTFDEEAYKNVNQEVV 66
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 17/133 (12%), Positives = 29/133 (21%), Gaps = 6/133 (4%)
Query: 97 VGFGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN 156
V K G KG + VV G G VG L G V++ +
Sbjct: 5 TAAAGVALVVKA-AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAA 63
Query: 157 VMHHFGNPNFELIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 211
+ + + ++ + + +V
Sbjct: 64 ADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVAD 123
Query: 212 LNMLGLAKRVGAR 224
N G
Sbjct: 124 YNAQPPLGIGGID 136
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 38.5 bits (88), Expect = 6e-04
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVD-NFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
V+ G+GFV +D L G V V + +K + P + D
Sbjct: 5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE 64
Query: 179 LEVDQIYHLACPASPVHYKFNPVKTIKTNVV 209
+ + P + K +VV
Sbjct: 65 VAKHDLVISLIPYTFHATVIKSAIRQKKHVV 95
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.7 bits (84), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+ R++V GG G +GS V AR V +D
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASID 33
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.4 bits (83), Expect = 0.004
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+++V GG G +GS +++ G +V+ +D
Sbjct: 4 KVIVYGGKGALGSAILEFFKKNGYTVLNID 33
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 442 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.97 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.93 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.93 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.93 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.92 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.9 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.87 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.86 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.8 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.79 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.79 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.79 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.78 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.78 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.78 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.77 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.77 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.77 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.77 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.77 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.77 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.77 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.77 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.77 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.77 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.76 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.76 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.75 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.75 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.75 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.75 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.75 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.74 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.74 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.74 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.74 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.73 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.73 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.73 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.72 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.72 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.72 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.71 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.71 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.71 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.71 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.7 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.69 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.69 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.69 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.68 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.68 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.68 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.68 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.64 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.64 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.64 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.62 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.61 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.61 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.61 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.59 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.58 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.58 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.57 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.52 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.52 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.51 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.5 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.49 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.47 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.43 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.4 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.34 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.88 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.13 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.08 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.05 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.9 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.9 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.8 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.8 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.79 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.76 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.74 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.74 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.73 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.71 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.71 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.66 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.61 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.51 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.51 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.47 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.46 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.46 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.44 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.39 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.37 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.3 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.27 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.17 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.14 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.03 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.01 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.01 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.94 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.79 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.64 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.61 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.6 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.55 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.5 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.5 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.49 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.3 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.27 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.22 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.17 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.14 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.09 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.07 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.03 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.01 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.77 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.73 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.71 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.51 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.46 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.44 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.35 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.3 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.24 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.2 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.13 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.02 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.86 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.78 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.73 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.72 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.7 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.69 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.57 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.54 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.39 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.36 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.36 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.34 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.34 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 94.33 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.29 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.1 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.02 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.99 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.95 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.94 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.87 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.86 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.82 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.79 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.78 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.73 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.69 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 93.63 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.51 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.26 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 93.17 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.06 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.95 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.94 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 92.9 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.89 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 92.67 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.43 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.31 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.22 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 92.16 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.12 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 92.07 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.92 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 91.86 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 91.85 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.83 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.78 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.78 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.51 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 91.48 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 91.43 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 91.41 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.39 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.34 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.11 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.82 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 90.77 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.7 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 90.65 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.28 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.15 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.06 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 90.01 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.89 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 89.86 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.82 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.77 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 89.76 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 89.76 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.59 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 89.33 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.29 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.25 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.2 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 89.11 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 89.1 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 89.1 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 88.83 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.43 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 88.19 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 88.16 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 88.09 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.75 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.71 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.56 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.51 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 87.39 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 87.38 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.28 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 87.22 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 86.77 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 86.34 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 86.24 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.08 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.05 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 85.86 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.59 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 85.46 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.56 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 84.49 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.37 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.49 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 83.31 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 82.6 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 82.46 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 82.42 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 81.38 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 81.08 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 80.65 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 80.3 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-51 Score=396.08 Aligned_cols=308 Identities=65% Similarity=1.089 Sum_probs=283.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCcc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHY 196 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~ 196 (442)
||||||||+||||++|+++|+++|++|++++|....+.+.........++++.+.|..+..+.++|+|||+|+......+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~~ 81 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNY 81 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchhH
Confidence 58999999999999999999999999999998766666666666667789999999999999999999999997665556
Q ss_pred cCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 013467 197 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276 (442)
Q Consensus 197 ~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~ 276 (442)
..++...+++|+.|+.+|+++|++.+++|||+||..+||.....+++|+.+...++..|.+.|+.+|.++|.+++.+++.
T Consensus 82 ~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~ 161 (312)
T d2b69a1 82 MYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQ 161 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999998888999987777778888899999999999999999999
Q ss_pred cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCCCc
Q 013467 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 356 (442)
Q Consensus 277 ~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~~~ 356 (442)
.|++++++||++||||+...+...+++.++..++.++++.+++++.+.++|+|++|+++++..+++....++||++++..
T Consensus 162 ~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~~~~~n~~~~~~ 241 (312)
T d2b69a1 162 EGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 241 (312)
T ss_dssp HCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEESCCCE
T ss_pred hCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhccCCceEecCCcc
Confidence 99999999999999998877777899999999999999999999999999999999999999999988888999999999
Q ss_pred cCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhh
Q 013467 357 FTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 357 ~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
+++.++++.+.+.++.+..+.+.+....++....+|++|++++|||+|+++|+++|+++++||++++.
T Consensus 242 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 242 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp EEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888877777788899999999999999999999999999999998764
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.7e-46 Score=363.23 Aligned_cols=300 Identities=29% Similarity=0.475 Sum_probs=259.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC------eEEEEeCCCCC-CccccccccCCCceeEEecccccc-----ccCCCCEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD------SVIVVDNFFTG-RKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~------~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~V 184 (442)
|||||||||||||++|+++|+++|+ +|+.+++.... ....+.......++.++++|..+. ....+|+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 6899999999999999999999997 45566554322 222233333456899999998664 34679999
Q ss_pred EEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHH
Q 013467 185 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGK 263 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 263 (442)
||+|+.........++...+++|+.|+.+++++|.+.++ +|||+||..+||.....+++|+ .+..|.+.|+.+|
T Consensus 81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y~~sK 155 (322)
T d1r6da_ 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (322)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHHHHHH
Confidence 999987665555667788899999999999999999997 9999999999999888889998 6778889999999
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcC
Q 013467 264 RTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 343 (442)
Q Consensus 264 ~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~ 343 (442)
..+|.+++.+.++.+++++++||++||||+. ....++..++.++..++++.+++++++.++|+|++|+|+++..++++
T Consensus 156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~--~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~ 233 (322)
T d1r6da_ 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQ--HPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233 (322)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTC--CTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeEECcCC--CcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999986 33578999999999999999999999999999999999999999998
Q ss_pred CCCc-cEEecCCCccCHHHHHHHHHHHhCCCCce-EeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHH
Q 013467 344 EHVG-PFNLGNPGEFTMLELAQVVQETIDPNAKI-EFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 344 ~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~ 421 (442)
+..| +||+++++.+++.|+++.+.+.+|.+... ......+.......+|++|+++.|||+|+++++|+|+++++||++
T Consensus 234 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~ 313 (322)
T d1r6da_ 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRE 313 (322)
T ss_dssp CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Confidence 8776 99999999999999999999999988654 444555566677889999999999999999999999999999997
Q ss_pred Hh
Q 013467 422 RI 423 (442)
Q Consensus 422 ~~ 423 (442)
+-
T Consensus 314 n~ 315 (322)
T d1r6da_ 314 NR 315 (322)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-44 Score=355.25 Aligned_cols=302 Identities=24% Similarity=0.326 Sum_probs=238.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc----cccc--cccCCCceeEEeccccccc-----cC--CCCE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK----ENVM--HHFGNPNFELIRHDVVEPL-----LL--EVDQ 183 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~----~~~~--~~~~~~~v~~~~~D~~~~~-----~~--~~d~ 183 (442)
|+|||||||||||++|+++|+++|++|++++|...... +.+. ......++.++++|+.+.. +. ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 57999999999999999999999999999998643221 1111 1123457899999997652 23 4699
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC----eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChh
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCY 259 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~----r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y 259 (442)
|||+|+.........++..++++|+.||.+|+++|++.++ +|||+||..+||.+...+++|+ ++..|.+.|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~Y 156 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 156 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCChH
Confidence 9999998776666778888999999999999999998763 6999999999998888899998 567778999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcC-CCcEEecCCceeEeccCHHHHHHHH
Q 013467 260 DEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 260 ~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
+.+|+.+|.+++.+.+..+++++++||+++|||+..... ...+..++.....+ .....+|++++.++|+|++|+++++
T Consensus 157 ~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~ 236 (357)
T d1db3a_ 157 AVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHH
Confidence 999999999999999999999999999999999753221 12344444444554 4456678999999999999999999
Q ss_pred HHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCC-------------------------------CCCCC
Q 013467 338 MRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPN-------------------------------TEDDP 386 (442)
Q Consensus 338 ~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~-------------------------------~~~~~ 386 (442)
..+++++..+.||+++++.+|+.|+++.+.+.+|....+...+. .+.+.
T Consensus 237 ~~~~~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 316 (357)
T d1db3a_ 237 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEV 316 (357)
T ss_dssp HHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-
T ss_pred HHHHhCCCCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccccCCCccc
Confidence 99999887789999999999999999999999985443211000 01122
Q ss_pred CccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 387 HKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 387 ~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
....+|++|++++|||+|+++|+|+|+++++++.+..
T Consensus 317 ~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~ 353 (357)
T d1db3a_ 317 ETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA 353 (357)
T ss_dssp CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999998876653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.5e-44 Score=354.96 Aligned_cols=304 Identities=24% Similarity=0.432 Sum_probs=250.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeE-EEEeCCCCC-CccccccccCCCceeEEeccccccc-----cC--CCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSV-IVVDNFFTG-RKENVMHHFGNPNFELIRHDVVEPL-----LL--EVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V-~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 187 (442)
|+||||||+||||++|+++|+++|++| +++++.... ............+++++.+|+.+.. +. ++|+|||+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 689999999999999999999999975 455543322 2233444445678999999998762 12 58999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC----------CeEEEeecCccccCCCCCCCCCCCC-----CCCCC
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG----------ARFLLTSTSEVYGDPLQHPQKETYW-----GNVNP 252 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g----------~r~i~iSS~~vy~~~~~~~~~E~~~-----~~~~~ 252 (442)
||...+.....++...+++|+.|+.+++++|++.+ .+||++||..+||.....+..|... ....+
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence 99766555556788899999999999999998753 2899999999999765444333211 22356
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHH
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~D 332 (442)
..|.+.|+.+|.++|.++..+.++.+++++++||++||||+. ...+++..++..++.++++.++++|++.++|+|++|
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~--~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D 238 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYH--FPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC--CTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCC--CcCcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHH
Confidence 678899999999999999999999999999999999999986 335688999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCc-cEEecCCCccCHHHHHHHHHHHhCC--------CCceEeCCCCCCCCCccccChHHHHHhhCCC
Q 013467 333 LVEGLMRLMEGEHVG-PFNLGNPGEFTMLELAQVVQETIDP--------NAKIEFRPNTEDDPHKRKPDISRAKELLGWE 403 (442)
Q Consensus 333 va~ai~~~l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~--------~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~ 403 (442)
+|+++..+++++..+ +||+++++.+++.|+++.+.+.++. +..+...+..+.....+.+|+++++++|||+
T Consensus 239 ~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 318 (361)
T d1kewa_ 239 HARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWK 318 (361)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHHHHHHCCC
Confidence 999999999987665 9999999999999999999887643 2344444545556667889999999999999
Q ss_pred cccCHHHHHHHHHHHHHHH
Q 013467 404 PKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 404 p~~~l~e~l~~~~~~~~~~ 422 (442)
|+++++|+|+++++||+++
T Consensus 319 P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 319 PLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp CSCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999876
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=4e-44 Score=349.10 Aligned_cols=305 Identities=25% Similarity=0.357 Sum_probs=257.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc------cccCCCceeEEecccccc-----ccCCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM------HHFGNPNFELIRHDVVEP-----LLLEVD 182 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~------~~~~~~~v~~~~~D~~~~-----~~~~~d 182 (442)
.++|+|||||||||||++|+++|+++||+|++++|.......... .......+.++.+|..+. ...+.+
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 456799999999999999999999999999999985544332211 111225688899998775 345789
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHH
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDE 261 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~ 261 (442)
.|+|+++.........++...+++|+.|+.+|+++|++.++ +|||+||..+||.....+++|+ .+..|.+.|+.
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~ 168 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYAV 168 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCCcchH
Confidence 99999987665556677888999999999999999999998 9999999999999888899998 67778899999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHH
Q 013467 262 GKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 339 (442)
Q Consensus 262 sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~ 339 (442)
+|.++|.+++.+.+..+++++++||+++||++...+. ..++..++..++.|+++.++++|.+.++|+||+|++.++..
T Consensus 169 sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~ 248 (341)
T d1sb8a_ 169 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLL 248 (341)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhh
Confidence 9999999999999999999999999999999765433 45788999999999999999999999999999999999999
Q ss_pred HHcCCC--C-ccEEecCCCccCHHHHHHHHHHHhCCCC-----ceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHH
Q 013467 340 LMEGEH--V-GPFNLGNPGEFTMLELAQVVQETIDPNA-----KIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKG 411 (442)
Q Consensus 340 ~l~~~~--~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~-----~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~ 411 (442)
++..+. . +.||+++++.+|+.|+++.+.+.++.+. ...+.+....+......|++|+++.|||+|+++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~sl~~g 328 (341)
T d1sb8a_ 249 AATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAG 328 (341)
T ss_dssp HHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCCHHHH
T ss_pred hhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCCCHHHH
Confidence 987653 2 3999999999999999999999988543 1222233344555678899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 013467 412 LPKMVKDFRQRI 423 (442)
Q Consensus 412 l~~~~~~~~~~~ 423 (442)
|+++++||++.+
T Consensus 329 i~~ti~wy~~~~ 340 (341)
T d1sb8a_ 329 VALAMPWYIMFL 340 (341)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999853
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4e-43 Score=342.72 Aligned_cols=307 Identities=23% Similarity=0.364 Sum_probs=250.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC--CCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF--FTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~--~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
+||+|||||||||||++|+++|+++|++|.+++++ ...............+++++.+|+.+. ++.++|.|+|+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~ 80 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 80 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence 47899999999999999999999999875555442 222222222333456899999998764 45689999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCC-------CCCCCCCCCCCCCCCCCChhH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ-------HPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~-------~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
|+.........++...+++|+.|+.+++++|++.+.++|++||..+||.... .......+...++..|.+.|+
T Consensus 81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~ 160 (346)
T d1oc2a_ 81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS 160 (346)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred hhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHHH
Confidence 9876655555678889999999999999999999999999999999974211 000111111225667789999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHH
Q 013467 261 EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRL 340 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~ 340 (442)
.+|.++|.+++.++++.+++++++||+++|||+. .....+..++.....+.++.+++++++.++|+|++|+|++++.+
T Consensus 161 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~--~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~ 238 (346)
T d1oc2a_ 161 STKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ--HIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI 238 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC--CTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC--CccchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999975 33567788888888999999999999999999999999999999
Q ss_pred HcCCCCc-cEEecCCCccCHHHHHHHHHHHhCCCC-ceEeCCCCCCCCCccccChHHHHHhhCCCccc-CHHHHHHHHHH
Q 013467 341 MEGEHVG-PFNLGNPGEFTMLELAQVVQETIDPNA-KIEFRPNTEDDPHKRKPDISRAKELLGWEPKV-SLRKGLPKMVK 417 (442)
Q Consensus 341 l~~~~~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~-~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~-~l~e~l~~~~~ 417 (442)
++++..+ .||+++++..++.++++.+.+.++.+. .+.+.+..+.......+|++|++++|||+|++ +|+++|+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~ 318 (346)
T d1oc2a_ 239 LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQ 318 (346)
T ss_dssp HHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred HhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHH
Confidence 9887765 899999999999999999999998754 45555555566667788999999999999987 69999999999
Q ss_pred HHHHHh
Q 013467 418 DFRQRI 423 (442)
Q Consensus 418 ~~~~~~ 423 (442)
||+++-
T Consensus 319 w~~~n~ 324 (346)
T d1oc2a_ 319 WYTDNQ 324 (346)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 999753
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.3e-43 Score=346.53 Aligned_cols=305 Identities=27% Similarity=0.390 Sum_probs=249.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
+.|||||||||||||++|+++|+++||+|+++++......... ....++..+|+.+. .+.++|+|||+|+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhh-----cccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 5789999999999999999999999999999987543322211 12345666666543 4578999999998
Q ss_pred cCCCCcc-cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCC--CCCCCCCCCChhHHHHHH
Q 013467 190 PASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYW--GNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 190 ~~~~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~--~~~~~~~~~~~Y~~sK~~ 265 (442)
....... ...+......|+.++.+++++|++.++ +||++||..+|+.....+..|... ....+..|.+.|+.+|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~ 168 (363)
T d2c5aa1 89 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLA 168 (363)
T ss_dssp CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHHH
Confidence 6554332 356778889999999999999999998 999999999999776666655432 233566778999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC---CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD---GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 342 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~ 342 (442)
+|.+++.+.++.|++++++||+++||++..... ......+............+++|.+.++|+|++|+++++..+++
T Consensus 169 ~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~ 248 (363)
T d2c5aa1 169 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTK 248 (363)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHh
Confidence 999999999999999999999999999753221 22334444555667778889999999999999999999999999
Q ss_pred CCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHH
Q 013467 343 GEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 343 ~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~ 422 (442)
.+..++||++++..+++.|+++.+.+.+|.+..+...+.+. ......+|++|++++|||+|+++|+|+|+++++||+++
T Consensus 249 ~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~ 327 (363)
T d2c5aa1 249 SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 327 (363)
T ss_dssp SSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCCC-CccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998887765443 34556789999999999999999999999999999887
Q ss_pred hhc
Q 013467 423 IFG 425 (442)
Q Consensus 423 ~~~ 425 (442)
...
T Consensus 328 ~~~ 330 (363)
T d2c5aa1 328 IEK 330 (363)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-43 Score=339.51 Aligned_cols=302 Identities=23% Similarity=0.400 Sum_probs=247.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc--cccCCCceeEEeccccccc-----cC--CCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM--HHFGNPNFELIRHDVVEPL-----LL--EVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 187 (442)
|||||||||||||++|+++|+++|++|++++|.......... +.....++.++++|+.+.. +. ++|+|||+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 689999999999999999999999999999986555443322 2234468999999987753 23 69999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
||.........++...+++|+.||.+++++|++.++ +||++||..+|+.....+..|.. ....+.+.|+.+|..+
T Consensus 81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK~~~ 156 (338)
T d1udca_ 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSKLMV 156 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHHHHH
T ss_pred CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHHhhh
Confidence 997654555567889999999999999999999997 99999999999877666665553 3456778999999999
Q ss_pred HHHHHHHHhh-cCCcEEEEeeCceeCCCCccC--------CCchHHHHHHHHHcC-CCcEEecC------CceeEeccCH
Q 013467 267 ETLTMDYHRG-AGVEVRIARIFNTYGPRMCID--------DGRVVSNFVAQALRK-EPLTVYGD------GKQTRSFQFV 330 (442)
Q Consensus 267 E~~v~~~~~~-~g~~~~iiRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~v~v 330 (442)
|.++.++..+ .+++++++||+++||++.... ...++..++...+.+ .++.++|+ +.+.++|+|+
T Consensus 157 e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v 236 (338)
T d1udca_ 157 EQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_dssp HHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEH
T ss_pred hHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEE
Confidence 9999976655 489999999999999865321 123566666655544 45666654 6788999999
Q ss_pred HHHHHHHHHHHcCCC---C-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCccc
Q 013467 331 SDLVEGLMRLMEGEH---V-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKV 406 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~ 406 (442)
+|++.++..++.... . ++||++++..+|+.|+++.+.+.+|.+..+.+.+..+.......+|++|+++.|||+|++
T Consensus 237 ~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~~ 316 (338)
T d1udca_ 237 MDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred eehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcCC
Confidence 999998888665322 2 389999999999999999999999999999888776666777889999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 013467 407 SLRKGLPKMVKDFRQR 422 (442)
Q Consensus 407 ~l~e~l~~~~~~~~~~ 422 (442)
+++++|+++++||+++
T Consensus 317 ~l~egi~~ti~w~~~~ 332 (338)
T d1udca_ 317 TLDEMAQDTWHWQSRH 332 (338)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999986
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.3e-42 Score=333.33 Aligned_cols=304 Identities=21% Similarity=0.257 Sum_probs=247.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc-cccccCCCceeEEecccccccc-------CCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN-VMHHFGNPNFELIRHDVVEPLL-------LEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~A 188 (442)
|+|||||||||||++|+++|+++||+|++++|........ +.......++.++.+|+.+... ...++++|+|
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a 80 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA 80 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence 5899999999999999999999999999999975443322 2222234678999999987532 1477888888
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
+.........++..++..|+.|+.+++++|++.++ +|+++||..+|+.......+|+ ++..+.+.|+.+|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 155 (321)
T d1rpna_ 81 AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYG 155 (321)
T ss_dssp SCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHH
T ss_pred ccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChhHHHHHHH
Confidence 76555555567888899999999999999999984 7889999999998888888887 6777889999999999
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHHHHHHHHcC-CCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
|.++.++.++.+++++++||+++|||....+. .+.+..++.....+ .+...++++++.++|+|++|+|++++.+++++
T Consensus 156 E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~ 235 (321)
T d1rpna_ 156 HWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 235 (321)
T ss_dssp HHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcC
Confidence 99999999999999999999999999753221 12233444444444 45556889999999999999999999999999
Q ss_pred CCccEEecCCCccCHHHHHHHHHHHhCCCCce--EeCC--CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHH
Q 013467 345 HVGPFNLGNPGEFTMLELAQVVQETIDPNAKI--EFRP--NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 345 ~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~--~~~~--~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~ 420 (442)
..+.||+++++..++.++++.+.+.+|.+.+. ...+ ..+.+......|++|++++|||+|+++|+|+|+++++||.
T Consensus 236 ~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l 315 (321)
T d1rpna_ 236 KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADL 315 (321)
T ss_dssp SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred CcCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999976532 2221 1223445678899999999999999999999999999999
Q ss_pred HHhhc
Q 013467 421 QRIFG 425 (442)
Q Consensus 421 ~~~~~ 425 (442)
++..+
T Consensus 316 ~~~~~ 320 (321)
T d1rpna_ 316 RRVSR 320 (321)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-42 Score=336.50 Aligned_cols=304 Identities=25% Similarity=0.427 Sum_probs=248.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A~ 189 (442)
|||||||||||||++|+++|+++|+ +|+++++.... ........+++++.+|+.+. ...++|+|||+|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 6899999999999999999999995 89999874322 22233457899999998653 3456999999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCC--CCCCCCCChhHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGN--VNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~--~~~~~~~~~Y~~sK~~~E 267 (442)
.........++...+..|+.|+.+++++|.+.+++++++||..+|+........|..... .....|...|+.+|..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E 156 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence 866656666778889999999999999999999999999999999987776666653321 123345678999999999
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCccC------CCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHH
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCID------DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM 341 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l 341 (442)
.+++.+.++.|++++++|++.+||++.... ....+..++..++.|+++.+++++++.++|+|++|+++++..++
T Consensus 157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~ 236 (342)
T d2blla1 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (342)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeeh
Confidence 999999999999999999999999865322 23467888899999999999999999999999999999999999
Q ss_pred cCCC---Cc-cEEecCCC-ccCHHHHHHHHHHHhCCCCceEeCCCC---------------CCCCCccccChHHHHHhhC
Q 013467 342 EGEH---VG-PFNLGNPG-EFTMLELAQVVQETIDPNAKIEFRPNT---------------EDDPHKRKPDISRAKELLG 401 (442)
Q Consensus 342 ~~~~---~g-~~~i~~~~-~~s~~dl~~~l~~~~g~~~~~~~~~~~---------------~~~~~~~~~d~~k~~~~LG 401 (442)
+++. .| +||+++++ .+|+.|+++.+.+.++........+.. ..++....+|++|++++||
T Consensus 237 ~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 316 (342)
T d2blla1 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLD 316 (342)
T ss_dssp HCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHC
T ss_pred hhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccCHHHHHHHHC
Confidence 8752 23 99998765 589999999999999876554332221 1223455679999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHhh
Q 013467 402 WEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 402 ~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
|+|+++++|+|+++++||+++..
T Consensus 317 w~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 317 WEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSC
T ss_pred CCcCCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999998753
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-41 Score=325.98 Aligned_cols=302 Identities=21% Similarity=0.263 Sum_probs=241.7
Q ss_pred CEE-EEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc----ccccc---cCCCceeEEeccccccc-----c--CCC
Q 013467 117 LRI-VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE----NVMHH---FGNPNFELIRHDVVEPL-----L--LEV 181 (442)
Q Consensus 117 ~~v-lVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~----~~~~~---~~~~~v~~~~~D~~~~~-----~--~~~ 181 (442)
||| ||||||||||++|+++|+++||+|++++|....... .+... ....+++++.+|+.+.. + .++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 467 999999999999999999999999999996543221 11111 11246889999997752 2 257
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC----eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRS 257 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~----r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~ 257 (442)
++|+|+++.........++..++++|+.||.+++++|++.++ +|||+||..|||.+...+++|+ .+..|.+
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~~ 155 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS 155 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCCC
Confidence 899999987655555566777889999999999999999873 7999999999998888889998 5777889
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC--CchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 258 CYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 258 ~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
.|+.+|.++|++++++.++.+++++++||+++|||+..... ..+...+......+.++..++++.+.++|+|++|+++
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 99999999999999999999999999999999999753221 1233344455556777888899999999999999999
Q ss_pred HHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCC---------------------CCCCCCccccChH
Q 013467 336 GLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPN---------------------TEDDPHKRKPDIS 394 (442)
Q Consensus 336 ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~---------------------~~~~~~~~~~d~~ 394 (442)
++..++++...+.|++..+...++.++...+...++.......... .+.......+|++
T Consensus 236 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~s 315 (347)
T d1t2aa_ 236 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCT 315 (347)
T ss_dssp HHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCH
T ss_pred HHHHHhhcCCCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCEeeECHH
Confidence 9999999988889999999999999999999999987654322111 1122334567999
Q ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHh
Q 013467 395 RAKELLGWEPKVSLRKGLPKMVKDFRQRI 423 (442)
Q Consensus 395 k~~~~LG~~p~~~l~e~l~~~~~~~~~~~ 423 (442)
|++++|||+|+++|+|+|++|++++.+..
T Consensus 316 kak~~Lgw~P~~sl~e~i~~~I~~~~~~~ 344 (347)
T d1t2aa_ 316 KAKQKLNWKPRVAFDELVREMVHADVELM 344 (347)
T ss_dssp HHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876644
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-41 Score=322.02 Aligned_cols=291 Identities=24% Similarity=0.362 Sum_probs=235.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--cCCCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL--LLEVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~d~Vih~A~~~~~~ 194 (442)
|||||||||||||++|+++|+++|+.|+++++... +++.+.+..... ...+|.|+|+|+.....
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~ 68 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------LNLLDSRAVHDFFASERIDQVYLAAAKVGGI 68 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCCH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--------------ccccCHHHHHHHHhhcCCCEEEEcchhcccc
Confidence 58999999999999999999999999988754321 111111112222 23589999999764432
Q ss_pred -cccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 013467 195 -HYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMD 272 (442)
Q Consensus 195 -~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~ 272 (442)
....+..+++++|+.||.+++++|++.++ +|||+||.++||.....+++|+......+..+.+.|+.+|.++|++++.
T Consensus 69 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 148 (315)
T d1e6ua_ 69 VANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCES 148 (315)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 22345677889999999999999999998 8999999999998888888888655445554556799999999999999
Q ss_pred HHhhcCCcEEEEeeCceeCCCCccC--CCchHH-----HHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC-
Q 013467 273 YHRGAGVEVRIARIFNTYGPRMCID--DGRVVS-----NFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE- 344 (442)
Q Consensus 273 ~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~- 344 (442)
+.++.|++++++||++||||+.... ...+.. .+......+..+.+++++.+.++|+|++|+++++..+++..
T Consensus 149 ~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~ 228 (315)
T d1e6ua_ 149 YNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAH 228 (315)
T ss_dssp HHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCH
T ss_pred HHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhcc
Confidence 9999999999999999999976432 222322 23445566788888999999999999999999999998654
Q ss_pred ---------CCccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHH
Q 013467 345 ---------HVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM 415 (442)
Q Consensus 345 ---------~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~ 415 (442)
..+.++++.+...++.++++.+.+.+|.+..+.+.+..+........|++|+++ |||+|+++++|+|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~-Lg~~p~~~l~e~i~~t 307 (315)
T d1e6ua_ 229 EVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLAST 307 (315)
T ss_dssp HHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHH-TTCCCCCCHHHHHHHH
T ss_pred ccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHH-cCCCCCCCHHHHHHHH
Confidence 234899999999999999999999999999988877666666677899999975 9999999999999999
Q ss_pred HHHHHHH
Q 013467 416 VKDFRQR 422 (442)
Q Consensus 416 ~~~~~~~ 422 (442)
++||+++
T Consensus 308 i~w~~~N 314 (315)
T d1e6ua_ 308 YQWFLEN 314 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999975
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-39 Score=316.69 Aligned_cols=302 Identities=23% Similarity=0.379 Sum_probs=239.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcc------cc--ccccCCCceeEEeccccccc-----c--CCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE------NV--MHHFGNPNFELIRHDVVEPL-----L--LEV 181 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~------~~--~~~~~~~~v~~~~~D~~~~~-----~--~~~ 181 (442)
+||||||||||||++|+++|+++|++|++++|....... .. .......++.++++|+.+.. + .+.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 589999999999999999999999999999863322111 11 11224567899999988652 2 246
Q ss_pred CEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhH
Q 013467 182 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
++|+|+||.........++...++.|+.|+.+++++|++.++ +|||+||+.+|+........+.. ....+.+.|+
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~Y~ 158 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNPYG 158 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCChHH
Confidence 789999997665555567888899999999999999999998 89999999999876554433331 2334557899
Q ss_pred HHHHHHHHHHHHHHhh-cCCcEEEEeeCceeCCCCcc--------CCCchHHHHHHHHHc-CCCcEEec------CCcee
Q 013467 261 EGKRTAETLTMDYHRG-AGVEVRIARIFNTYGPRMCI--------DDGRVVSNFVAQALR-KEPLTVYG------DGKQT 324 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~-~g~~~~iiRp~~v~G~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~ 324 (442)
.+|..+|..++++.+. .+++.+++||+++||+.... ....++..+...... +.++.+++ ++.+.
T Consensus 159 ~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~ 238 (346)
T d1ek6a_ 159 KSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238 (346)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCE
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCee
Confidence 9999999999998765 48999999999999986421 123355555554443 45555543 46778
Q ss_pred EeccCHHHHHHHHHHHHcCCC---C-ccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhh
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---V-GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELL 400 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~-g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~L 400 (442)
++|+|++|+|.++..++.... . ++||++++..+++.|+++.+.+.+|.+.++.+.+..+.+.....+|++|++++|
T Consensus 239 Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~~~l 318 (346)
T d1ek6a_ 239 RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEEL 318 (346)
T ss_dssp ECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHTT
T ss_pred EeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHHHHH
Confidence 999999999999988765432 2 389999999999999999999999999999888877777778889999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHH
Q 013467 401 GWEPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 401 G~~p~~~l~e~l~~~~~~~~~~ 422 (442)
||+|+++++|+|+++++||+++
T Consensus 319 gw~p~~slee~I~~~i~w~~~n 340 (346)
T d1ek6a_ 319 GWTAALGLDRMCEDLWRWQKQN 340 (346)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999975
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.5e-40 Score=319.13 Aligned_cols=301 Identities=23% Similarity=0.362 Sum_probs=233.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc--cccCCCceeEEeccccccc-----c--CCCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM--HHFGNPNFELIRHDVVEPL-----L--LEVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~~-----~--~~~d~Vih~ 187 (442)
|.|||||||||||++|+++|+++|++|+++++......+... ......+++++.+|+.+.. + .++|+|||+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 469999999999999999999999999999876554433222 2223457889999987652 2 279999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCC----CCCCCCCCCCCCCCCCCChhHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ----HPQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~----~~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
|+...+.....++..+..+|+.|+.+++++|++.++ +||++||..+||.... .+++|+ .+..|.+.|+.+
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y~~s 156 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGHT 156 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHHHHH
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChhHhH
Confidence 998765566667888999999999999999999997 9999999999986443 445555 567777899999
Q ss_pred HHHHHHHHHHHHhh--cCCcEEEEeeCceeCCCCcc--------CCCchHHHHHHHHHc-CCCcEEecCC------ceeE
Q 013467 263 KRTAETLTMDYHRG--AGVEVRIARIFNTYGPRMCI--------DDGRVVSNFVAQALR-KEPLTVYGDG------KQTR 325 (442)
Q Consensus 263 K~~~E~~v~~~~~~--~g~~~~iiRp~~v~G~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~ 325 (442)
|.++|.+++++.+. .+++++++||+++||+.... ....++..++..... +.++.+++++ ...+
T Consensus 157 K~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~ 236 (347)
T d1z45a2 157 KYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 236 (347)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEE
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceee
Confidence 99999999998653 48999999999999975321 112355555554443 3455555544 4567
Q ss_pred eccCHHHHHHHHHHHHcCC------C--CccEEecCCCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHH
Q 013467 326 SFQFVSDLVEGLMRLMEGE------H--VGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAK 397 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~------~--~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 397 (442)
+++++.|++.+++.+++.. . .++||+++++++++.|+++.+.+.+|.+..+.+.+..+.+.....+|++|++
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAK 316 (347)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHH
T ss_pred eeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHH
Confidence 8888999999988877531 1 2389999999999999999999999999888776666666677889999999
Q ss_pred HhhCCCcccCHHHHHHHHHHHHHHH
Q 013467 398 ELLGWEPKVSLRKGLPKMVKDFRQR 422 (442)
Q Consensus 398 ~~LG~~p~~~l~e~l~~~~~~~~~~ 422 (442)
++|||+|+++|+|+|+++++||+++
T Consensus 317 ~~lGw~p~~~lee~i~~ti~w~~~n 341 (347)
T d1z45a2 317 RELKWQTELQVEDSCKDLWKWTTEN 341 (347)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=8.9e-39 Score=316.04 Aligned_cols=307 Identities=23% Similarity=0.346 Sum_probs=237.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh-CCCeEEEEeCCCCCCccc------------------cccccCCCceeEEecccccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNFFTGRKEN------------------VMHHFGNPNFELIRHDVVEP 176 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~-~g~~V~~l~r~~~~~~~~------------------~~~~~~~~~v~~~~~D~~~~ 176 (442)
.||||||||+||||++|+++|++ .|++|+++|+-....... .........+.++.+|+.+.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 57999999999999999999997 689999998632211100 00111234678899999775
Q ss_pred c--------cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCC-CC-
Q 013467 177 L--------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQK-ET- 245 (442)
Q Consensus 177 ~--------~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~-E~- 245 (442)
. ..++|+|||+|+..........+...++.|+.++.+++++|++.++ +++++||..+|+........ +.
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 161 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence 2 2468999999998665555567778899999999999999999997 89999999988754433221 11
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-------CchHHHHHHHHH--------
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-------GRVVSNFVAQAL-------- 310 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-------~~~~~~~~~~~~-------- 310 (442)
......+..|.+.|+.+|+.+|.+++.+.+..|++++++||+++|||+..... ..+++.++..++
T Consensus 162 ~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~ 241 (383)
T d1gy8a_ 162 PIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQR 241 (383)
T ss_dssp CBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC--
T ss_pred ccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcccccc
Confidence 11122566788999999999999999999999999999999999999865332 233444444332
Q ss_pred --------cCCCcEEec------CCceeEeccCHHHHHHHHHHHHcCC----------CCccEEecCCCccCHHHHHHHH
Q 013467 311 --------RKEPLTVYG------DGKQTRSFQFVSDLVEGLMRLMEGE----------HVGPFNLGNPGEFTMLELAQVV 366 (442)
Q Consensus 311 --------~~~~~~~~~------~~~~~~~~v~v~Dva~ai~~~l~~~----------~~g~~~i~~~~~~s~~dl~~~l 366 (442)
.+.++.+++ +|.+.++|+|++|+|+++..+++.. ..++||+++++++++.|+++.+
T Consensus 242 ~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~i 321 (383)
T d1gy8a_ 242 LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVA 321 (383)
T ss_dssp ---------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHHH
T ss_pred chhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHHHH
Confidence 244555554 4788899999999999999988631 1138999999999999999999
Q ss_pred HHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcccCHHHHHHHH-HHHHHHH
Q 013467 367 QETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKM-VKDFRQR 422 (442)
Q Consensus 367 ~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~-~~~~~~~ 422 (442)
.+.+|.+..+...+..+.+......|++|++++|||+|+++++|+|+++ +.||+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~ 378 (383)
T d1gy8a_ 322 RKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (383)
T ss_dssp HHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence 9999999988887776666777888999999999999999999999887 5787764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.9e-39 Score=312.86 Aligned_cols=305 Identities=22% Similarity=0.290 Sum_probs=237.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc----cccc---cccCCCceeEEecccccccc-------CCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK----ENVM---HHFGNPNFELIRHDVVEPLL-------LEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~----~~~~---~~~~~~~v~~~~~D~~~~~~-------~~~d 182 (442)
|++||||||||||++|+++|+++||+|++++|...... ..+. .......+.++.+|+.+... .++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 58999999999999999999999999999999643211 1111 11233567888999876421 3689
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC------CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG------ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g------~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
+|||+|+........+++...+..|+.++.++++++++.+ +++++.||..+|+. ...+++|+ .+..|.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~-~~~~~~E~-----~~~~p~ 155 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPR 155 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTT-SCSSBCTT-----SCCCCC
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceeccc-CCCCCCCC-----CCCCCc
Confidence 9999999765544456788899999999999999987642 26777787777754 34567787 677888
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCC-CchHHH-HHHHHHcCCCcEEecCCceeEeccCHHHHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDD-GRVVSN-FVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva 334 (442)
+.|+.+|..+|.++..+.+..+++++++||++||||+...+. ...+.. +...........+++++.+.++|+|++|+|
T Consensus 156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 235 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHH
Confidence 999999999999999999999999999999999999753211 112222 222334455667788999999999999999
Q ss_pred HHHHHHHcCCCCccEEecCCCccCHHHHHHHHHHHhCCCCce--EeC--CCCCCCCCccccChHHHHHhhCCCcccCHHH
Q 013467 335 EGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI--EFR--PNTEDDPHKRKPDISRAKELLGWEPKVSLRK 410 (442)
Q Consensus 335 ~ai~~~l~~~~~g~~~i~~~~~~s~~dl~~~l~~~~g~~~~~--~~~--~~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e 410 (442)
+++..+++++..+.+++..+...++.++++.+.+.++..... ... ...+.+......|++|++++|||+|++++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P~~~le~ 315 (339)
T d1n7ha_ 236 EAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEK 315 (339)
T ss_dssp HHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCcCCCHHH
Confidence 999999999988888888899999999999999999976542 221 1223344566789999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc
Q 013467 411 GLPKMVKDFRQRIFGDH 427 (442)
Q Consensus 411 ~l~~~~~~~~~~~~~~~ 427 (442)
+|++|++||.+....++
T Consensus 316 gi~~ti~~~~~~~~~~~ 332 (339)
T d1n7ha_ 316 LVKMMVDEDLELAKREK 332 (339)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999988776554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=4.9e-38 Score=304.34 Aligned_cols=304 Identities=27% Similarity=0.427 Sum_probs=240.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc-cccccccCCCceeEEecccccc-----ccC--CCCEEEEecc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHDVVEP-----LLL--EVDQIYHLAC 189 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A~ 189 (442)
||||||||||||++|+++|+++|++|+++++...... +.+.......+++++.+|+.+. ++. ++|+|||+|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 7999999999999999999999999999986433222 2222223456889999999764 222 4699999999
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCc-cccCCCCCCCCCCC-----------CCCCCCCCCC
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQKETY-----------WGNVNPIGVR 256 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~-vy~~~~~~~~~E~~-----------~~~~~~~~~~ 256 (442)
.........++...+++|+.||.+|+++|.+.++ ++|+.||.. +++.....+..+.. +....+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (338)
T d1orra_ 82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH 161 (338)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCC
T ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccc
Confidence 8665555567888999999999999999999996 666666554 45443332221110 1122455677
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCc-cCCCchHHHHHHHHHc-----CCCcEEecCCceeEeccCH
Q 013467 257 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC-IDDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQFV 330 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~v 330 (442)
+.|+.+|...|.++..+.+..+....++|++.+|++... ......+..++..+++ ++++.+++++.+.++|+|+
T Consensus 162 ~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v 241 (338)
T d1orra_ 162 SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEH
T ss_pred cccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEeeecc
Confidence 899999999999999999999999999999999977543 2334566667666553 6788899999999999999
Q ss_pred HHHHHHHHHHHcCCC---CccEEecC--CCccCHHHHHHHHHHHhCCCCceEeCCCCCCCCCccccChHHHHHhhCCCcc
Q 013467 331 SDLVEGLMRLMEGEH---VGPFNLGN--PGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPK 405 (442)
Q Consensus 331 ~Dva~ai~~~l~~~~---~g~~~i~~--~~~~s~~dl~~~l~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~LG~~p~ 405 (442)
+|++++++.+++++. .++|++.. +..+++.|+++.+.+.++.+..+...+..+.+......|++|++++|||+|+
T Consensus 242 ~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~Lg~~p~ 321 (338)
T d1orra_ 242 EDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPK 321 (338)
T ss_dssp HHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCC
T ss_pred cchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHHHHHHCCCcC
Confidence 999999999998753 34888854 5678999999999999999988888777666677788899999999999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 013467 406 VSLRKGLPKMVKDFRQ 421 (442)
Q Consensus 406 ~~l~e~l~~~~~~~~~ 421 (442)
++++|+|+++++||+.
T Consensus 322 ~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 322 VSAKDGVQKMYDWTSS 337 (338)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999985
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.4e-37 Score=306.73 Aligned_cols=307 Identities=25% Similarity=0.292 Sum_probs=231.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC---------------C-cccc--ccccCCCceeEEecccccc-
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---------------R-KENV--MHHFGNPNFELIRHDVVEP- 176 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~---------------~-~~~~--~~~~~~~~v~~~~~D~~~~- 176 (442)
+|||||||||||||++|+++|+++||+|+++|..... . .+.. .......+++++.+|+.+.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 5799999999999999999999999999999731100 0 0000 0111235789999999765
Q ss_pred ----ccC--CCCEEEEecccCCCCcccCC---hhHHHHHhHHHHHHHHHHHHHcCC--eEEEeecCccccCCCCCCCCCC
Q 013467 177 ----LLL--EVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 177 ----~~~--~~d~Vih~A~~~~~~~~~~~---~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.+. ++|+|||+||.........+ +...+++|+.||.+++++|++.++ +|++.||..+|+.... +..|.
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 233 47999999987554333333 446788999999999999999885 6788888888865432 22222
Q ss_pred CC---------CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccC---------------CCch
Q 013467 246 YW---------GNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID---------------DGRV 301 (442)
Q Consensus 246 ~~---------~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~---------------~~~~ 301 (442)
.+ ....+..|.+.|+.+|+.+|.+++.+.++.+++++++||+++|||+.... ...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 11 01135567789999999999999999999999999999999999974321 1346
Q ss_pred HHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC-CccEEe--cCCCccCHHHHHHHHHHHh---CCCCc
Q 013467 302 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH-VGPFNL--GNPGEFTMLELAQVVQETI---DPNAK 375 (442)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g~~~i--~~~~~~s~~dl~~~l~~~~---g~~~~ 375 (442)
+..++.....++++.++|++.+.++|+||+|+++++..+++++. .|.+++ .+++.+++.|+++.+.++. +.+..
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~ 319 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVK 319 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCC
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCCcc
Confidence 78888899999999999999999999999999999999999765 455554 3467899999999998875 44444
Q ss_pred eEeCC--CCCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHHHHhh
Q 013467 376 IEFRP--NTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 376 ~~~~~--~~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~~~~~ 424 (442)
....+ ..+.+......|++++++ |||+|+++++++|+++++|+++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 320 KMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp EEEECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred eeeccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHHHHHHH
Confidence 44332 233445566789999986 9999999999999999999877644
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1.7e-36 Score=285.97 Aligned_cols=272 Identities=17% Similarity=0.217 Sum_probs=228.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~~ 194 (442)
|||||||||||||++|+++|.++||+|++++|.. +++.+.+..++.+. ++|+|||+|+.....
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~~ 66 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHTAVD 66 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------ccCCCHHHHHHHHHHcCCCEEEeeccccccc
Confidence 6899999999999999999999999999998742 12222222233333 579999999976655
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~ 274 (442)
.....+......|+..+.++++.+...+..++++||..+|+.....+..|. ++..+...|+.+|...|.++++
T Consensus 67 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~~~~k~~~e~~~~~-- 139 (281)
T d1vl0a_ 67 KCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGENFVKA-- 139 (281)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHH--
T ss_pred cccccchhhcccccccccccccccccccccccccccceeeecccccccccc-----ccccchhhhhhhhhHHHHHHHH--
Confidence 555667788889999999999999999889999999999998888888888 5667788999999999988755
Q ss_pred hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCC
Q 013467 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~ 354 (442)
.+.+++++||+++||++ .++...++.....+..+.+++ ++.++++|++|+++++..++++...|+||++++
T Consensus 140 --~~~~~~i~R~~~vyG~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~g~~~~~~~ 210 (281)
T d1vl0a_ 140 --LNPKYYIVRTAWLYGDG-----NNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCK 210 (281)
T ss_dssp --HCSSEEEEEECSEESSS-----SCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHTCCEEEECCCB
T ss_pred --hCCCccccceeEEeCCC-----cccccchhhhhccCCceeecC--CceeccchhhhhhhhhhhhhhhcccCceeEeCC
Confidence 47899999999999986 456778888888888787765 488999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHhCCCCceEeCCCCC-----CCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHHH
Q 013467 355 GEFTMLELAQVVQETIDPNAKIEFRPNTE-----DDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFR 420 (442)
Q Consensus 355 ~~~s~~dl~~~l~~~~g~~~~~~~~~~~~-----~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~~ 420 (442)
+.+|+.|+++.+.+.+|.+.++...+... .+|....+|++|+++.|||+|. +|+++|+++++++|
T Consensus 211 ~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 211 GICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp SCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 99999999999999999998876544322 2334456899999999999998 99999999999985
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2.5e-35 Score=287.71 Aligned_cols=303 Identities=20% Similarity=0.255 Sum_probs=230.7
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccccc-------CCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL-------LEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~ 187 (442)
++|||||||||||||++|++.|+++|++|++++|.................++++.+|+.+... ..+|+|+|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~ 86 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM 86 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence 4679999999999999999999999999999999755444322222223578999999977532 257999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-e-EEEeecCccccCCC-CCCCCCCCCCCCCCCCCCChhHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-R-FLLTSTSEVYGDPL-QHPQKETYWGNVNPIGVRSCYDEGKR 264 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r-~i~iSS~~vy~~~~-~~~~~E~~~~~~~~~~~~~~Y~~sK~ 264 (442)
|+..........+...+.+|+.|+.+++++|++.+. + +++.|+..++.... ..+.+|+ .+..|.+.|+.+|.
T Consensus 87 aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y~~~k~ 161 (356)
T d1rkxa_ 87 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSKG 161 (356)
T ss_dssp CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHHH
T ss_pred hccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCccccccc
Confidence 997655555567888999999999999999999874 4 55555544444333 3344444 46667789999999
Q ss_pred HHHHHHHHHHh---------hcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 265 TAETLTMDYHR---------GAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 265 ~~E~~v~~~~~---------~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
..|..+..+.. ..++.++++||+++|||++.. ...++..++.....+ ...+++.+.+.++++|++|++.
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~-~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~v~D~~~ 239 (356)
T d1rkxa_ 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQS-QPVIIRNPHAIRPWQHVLEPLS 239 (356)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTT-CCEECSCTTCEECCEETHHHHH
T ss_pred cchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcch-hhHHHHHHHHHHhCC-CceEEeeccccccccccccccc
Confidence 99999988765 347889999999999997532 245677777666554 4456788999999999999999
Q ss_pred HHHHHHcCCC------CccEEe--cCCCccCHHHHHHHHHHHhCCCCceEeCC-CCCCCCCccccChHHHHHhhCCCccc
Q 013467 336 GLMRLMEGEH------VGPFNL--GNPGEFTMLELAQVVQETIDPNAKIEFRP-NTEDDPHKRKPDISRAKELLGWEPKV 406 (442)
Q Consensus 336 ai~~~l~~~~------~g~~~i--~~~~~~s~~dl~~~l~~~~g~~~~~~~~~-~~~~~~~~~~~d~~k~~~~LG~~p~~ 406 (442)
++..++.++. ....+. ..+..+++.++++.+.+.++....+.... ..+.+.....+|++|++++|||+|++
T Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~ 319 (356)
T d1rkxa_ 240 GYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRW 319 (356)
T ss_dssp HHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCC
T ss_pred hhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCcCC
Confidence 9999887542 123333 34567899999999999999888776542 22344556788999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 013467 407 SLRKGLPKMVKDFRQRIF 424 (442)
Q Consensus 407 ~l~e~l~~~~~~~~~~~~ 424 (442)
+++++|+++++||+.-..
T Consensus 320 ~l~egi~~ti~wyk~~~~ 337 (356)
T d1rkxa_ 320 NLNTTLEYIVGWHKNWLS 337 (356)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHc
Confidence 999999999999997544
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-34 Score=276.42 Aligned_cols=291 Identities=21% Similarity=0.264 Sum_probs=210.2
Q ss_pred EEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEec-cccc-----cccCCCCEEEEecccC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRH-DVVE-----PLLLEVDQIYHLACPA 191 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~-D~~~-----~~~~~~d~Vih~A~~~ 191 (442)
||||||+||||++|+++|+++|+ +|+++++-....... ........++.+. |..+ .....+++|+|+|+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~ 79 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV--NLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGH--HHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhh--cccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence 89999999999999999999995 799987643332221 1112223333332 2222 2345689999999853
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTM 271 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~ 271 (442)
. .+..+.......|+.++.+++++++..++++++.||..+|+........|+ .+..+.+.|+.+|..+|.+++
T Consensus 80 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y~~~K~~~e~~~~ 152 (307)
T d1eq2a_ 80 S--TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (307)
T ss_dssp C--TTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccchhhhhcc
Confidence 3 334466778889999999999999999999999999988877666666555 455677899999999999999
Q ss_pred HHHhhcCCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHcCCCcE-EecCCceeEeccCHHHHHHHHHHHHcCCCCcc
Q 013467 272 DYHRGAGVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLT-VYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 272 ~~~~~~g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~ 348 (442)
.+.++.+++++++||+++|||+.... ...++..+...+..++... ..+++...++|+|++|+++++..+++++..+.
T Consensus 153 ~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~~~~ 232 (307)
T d1eq2a_ 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232 (307)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEE
T ss_pred ccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhccccc
Confidence 99999999999999999999976432 2345666777777765544 35777888999999999999999999988889
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCceEeCCCC----CCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHHH
Q 013467 349 FNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNT----EDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 349 ~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~~----~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~~ 419 (442)
||+++++.+++.|+++.+.+..+ +..+.+.+.+ .........|++|+++.+||+|+++++|+|+++++|+
T Consensus 233 ~~~~~~~~~si~~i~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 233 FNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp EEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHHhcC-CCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 99999999999999999988764 3334333222 1223334569999999999999999999999999986
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=1.2e-34 Score=281.88 Aligned_cols=297 Identities=18% Similarity=0.181 Sum_probs=215.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccc----ccCCCceeEEeccccc-----cccCCCCEEE
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH----HFGNPNFELIRHDVVE-----PLLLEVDQIY 185 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~----~~~~~~v~~~~~D~~~-----~~~~~~d~Vi 185 (442)
++++||||||+||||++|+++|+++|++|++++|+... ...+.. ........++.+|+.+ .++.++|+|+
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~ 88 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK-LANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchh-HHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence 36799999999999999999999999999999985321 111111 1112233446677765 3567899999
Q ss_pred EecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcC-C-eEEEeecCccccCCC----CCCCCCCCCC-----------
Q 013467 186 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPL----QHPQKETYWG----------- 248 (442)
Q Consensus 186 h~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g-~-r~i~iSS~~vy~~~~----~~~~~E~~~~----------- 248 (442)
|+++... ...++...+..|+.||.+++++|.+.+ + +|||+||+.+++... ....+|+.|.
T Consensus 89 ~~a~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 165 (342)
T d1y1pa1 89 HIASVVS---FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP 165 (342)
T ss_dssp ECCCCCS---CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred hhccccc---ccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccccc
Confidence 9998643 445677788999999999999999874 5 899999987543221 2223344331
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
...+..+.+.|+.+|..+|.+++.++++. +++++++||+.+|||...+. ....+..++..++++...... .+.+.+
T Consensus 166 e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~ 244 (342)
T d1y1pa1 166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-ALMPPQ 244 (342)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-HTCCSE
T ss_pred ccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-CCccce
Confidence 22344556789999999999999998765 57788999999999975433 344677788888887665543 455668
Q ss_pred eccCHHHHHHHHHHHHcCCCC-ccEEecCCCccCHHHHHHHHHHHhCC-CCceEeCCCCCCCCCccccC---hHHHHHhh
Q 013467 326 SFQFVSDLVEGLMRLMEGEHV-GPFNLGNPGEFTMLELAQVVQETIDP-NAKIEFRPNTEDDPHKRKPD---ISRAKELL 400 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~~-g~~~i~~~~~~s~~dl~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~d---~~k~~~~L 400 (442)
+|+||+|+|++++.+++++.. |.|++++++.+++.|+++.+.+.++. +....+.. ........+ ..+..+.|
T Consensus 245 ~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~---~~~~~~~~~~~~s~~~~k~l 321 (342)
T d1y1pa1 245 YYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD---QGQDLSKFDTAPSLEILKSL 321 (342)
T ss_dssp EEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC---CCCCCCEECCHHHHHHHHHT
T ss_pred eeeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc---cCcccccccchHHHHHHHHc
Confidence 999999999999999998765 58889999999999999999999832 22222211 111112222 34444569
Q ss_pred CCCcccCHHHHHHHHHHHH
Q 013467 401 GWEPKVSLRKGLPKMVKDF 419 (442)
Q Consensus 401 G~~p~~~l~e~l~~~~~~~ 419 (442)
||.+.++++++|+++++.+
T Consensus 322 g~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 322 GRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp TCCSCCCHHHHHHHHHCCS
T ss_pred CCCCCcCHHHHHHHHHHhC
Confidence 9999889999999998754
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.97 E-value=2.9e-31 Score=251.58 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=206.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC--CCCEEEEecccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL--EVDQIYHLACPASPV 194 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~A~~~~~~ 194 (442)
|||||||||||||++|+++|.++|+.| ++++..... ..++.+.+..+..+. ++|+|||+||...+.
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~~-----------~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~ 68 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKEF-----------CGDFSNPKGVAETVRKLRPDVIVNAAAHTAVD 68 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSSS-----------CCCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCccc-----------cCcCCCHHHHHHHHHHcCCCEEEEeccccccc
Confidence 689999999999999999999998744 454432110 111112222223333 479999999987666
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 274 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~ 274 (442)
....++...+..|+.++.+|+++|++.+++++++||..+|+.....+..|+ .+..|.+.|+.+|..+|.+++...
T Consensus 69 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y~~~k~~~e~~~~~~~ 143 (298)
T d1n2sa_ 69 KAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEKALQDNC 143 (298)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHHHHHHHC
T ss_pred ccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCccc-----cccCCCchHhhhhhhhhhhHHhhh
Confidence 666778889999999999999999999999999999999998888888888 567788999999999999887653
Q ss_pred hhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHc----CC-CCccE
Q 013467 275 RGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME----GE-HVGPF 349 (442)
Q Consensus 275 ~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~----~~-~~g~~ 349 (442)
....++|++..++.. .......+...+..+..+... +....+++|+.|+++++..++. .+ ..++|
T Consensus 144 ----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~~~~ 213 (298)
T d1n2sa_ 144 ----PKHLIFRTSWVYAGK----GNNFAKTMLRLAKERQTLSVI--NDQYGAPTGAELLADCTAHAIRVALNKPEVAGLY 213 (298)
T ss_dssp ----SSEEEEEECSEECSS----SCCHHHHHHHHHHHCSEEEEE--CSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEE
T ss_pred ----cccccccccceeecc----CCccchhhhhhhcccceeecc--cceeecccccchHHHHHHHHHhhhhccccccccc
Confidence 456777777766442 133445555556666666554 3578899999999999988775 22 34699
Q ss_pred EecCCCccCHHHHHHHHHHHhCC---CCce---EeCCC-----CCCCCCccccChHHHHHhhCCCcccCHHHHHHHHHHH
Q 013467 350 NLGNPGEFTMLELAQVVQETIDP---NAKI---EFRPN-----TEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKD 418 (442)
Q Consensus 350 ~i~~~~~~s~~dl~~~l~~~~g~---~~~~---~~~~~-----~~~~~~~~~~d~~k~~~~LG~~p~~~l~e~l~~~~~~ 418 (442)
|+++++.+++.++++.+.+..+. ...+ ...+. ...+|....+|++|+++.|||+|. +|+++|++++++
T Consensus 214 n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~ 292 (298)
T d1n2sa_ 214 HLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTE 292 (298)
T ss_dssp ECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHH
T ss_pred cccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC-cHHHHHHHHHHH
Confidence 99999999999999988776542 2211 11111 112244557899999999999998 999999999999
Q ss_pred HHH
Q 013467 419 FRQ 421 (442)
Q Consensus 419 ~~~ 421 (442)
+..
T Consensus 293 ~~~ 295 (298)
T d1n2sa_ 293 MFT 295 (298)
T ss_dssp HHS
T ss_pred HHh
Confidence 864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.93 E-value=4.3e-27 Score=222.58 Aligned_cols=229 Identities=13% Similarity=0.178 Sum_probs=166.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc----ccccCCCceeEEecccccc-----ccCCCCEEEE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV----MHHFGNPNFELIRHDVVEP-----LLLEVDQIYH 186 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~----~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 186 (442)
.|||||||||||||++++++|+++||+|++++|......... ...+....++++.+|+.+. .+.+++.|||
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 468999999999999999999999999999999755432211 1122345788888888665 4568999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
+++. .+..++.+++++++++++ ++++.||....... . .. ..+...+..
T Consensus 83 ~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~-------~-----~~----~~~~~~~~~ 131 (307)
T d1qyca_ 83 TVGS---------------LQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN-------V-----HA----VEPAKSVFE 131 (307)
T ss_dssp CCCG---------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTS-------C-----CC----CTTHHHHHH
T ss_pred cccc---------------cccchhhHHHHHHHHhccccceeeecccccccc-------c-----cc----ccccccccc
Confidence 9863 345566788899999887 78888876543211 1 11 122333333
Q ss_pred HHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC
Q 013467 266 AETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH 345 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~ 345 (442)
.+.....+.++.+++++++||+++||+... .+..+.....++....+++++++.++|+|++|+|++++.+++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~i~r~~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~ 206 (307)
T d1qyca_ 132 VKAKVRRAIEAEGIPYTYVSSNCFAGYFLR-----SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 206 (307)
T ss_dssp HHHHHHHHHHHHTCCBEEEECCEEHHHHTT-----TTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGG
T ss_pred ccccccchhhccCCCceecccceecCCCcc-----chhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChh
Confidence 334444444567899999999999997532 122223334556667788889999999999999999999998875
Q ss_pred C--c-cEEecCCCccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 346 V--G-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 346 ~--g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
. + .|++++++.+|+.|+++.+.+++|.+.++...+
T Consensus 207 ~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 207 TLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 3 3 456667889999999999999999998876544
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.93 E-value=8.6e-27 Score=221.72 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=170.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc---ccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV---MHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
.+||||||||||||++|+++|+++||+|++++|......... ...+...+++++.+|+.+. .+.+++.+||+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 457999999999999999999999999999999654433211 1222446788999988764 56789999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHH
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTA 266 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~ 266 (442)
++.... ..|..++.+++++|++.+. ++++.||.+++..... .+..+...|...|..+
T Consensus 83 ~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~-----------~~~~~~~~~~~~~~~~ 140 (312)
T d1qyda_ 83 LAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME-----------HALQPGSITFIDKRKV 140 (312)
T ss_dssp CCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCC-----------CCCSSTTHHHHHHHHH
T ss_pred hhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcc-----------cccchhhhhhHHHHHH
Confidence 874221 2566677889999999875 8888998766533211 2333335555555555
Q ss_pred HHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 267 ETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 267 E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
+. +.+..+++++++||+.+||+...... ..+......+..+.+++++++.++|+|++|+|++++.++.++..
T Consensus 141 ~~----~~~~~~~~~~i~r~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 212 (312)
T d1qyda_ 141 RR----AIEAASIPYTYVSSNMFAGYFAGSLA----QLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT 212 (312)
T ss_dssp HH----HHHHTTCCBCEEECCEEHHHHTTTSS----CTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG
T ss_pred HH----hhcccccceEEeccceeecCCccchh----hHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccc
Confidence 54 45667899999999999996432111 11111123445666788999999999999999999999988754
Q ss_pred --cc-EEecCCCccCHHHHHHHHHHHhCCCCceEeCC
Q 013467 347 --GP-FNLGNPGEFTMLELAQVVQETIDPNAKIEFRP 380 (442)
Q Consensus 347 --g~-~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~ 380 (442)
+. |++++++.+|+.|+++.+.+++|.+.++...+
T Consensus 213 ~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 213 LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 34 55566778999999999999999988765443
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.8e-25 Score=204.56 Aligned_cols=201 Identities=15% Similarity=0.067 Sum_probs=148.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vih 186 (442)
+++++|+|||||||||++++++|+++| ++|++++|+......... ..+++...|..+ ..+.++|+|||
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~-----~~i~~~~~D~~~~~~~~~~~~~~d~vi~ 86 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY-----KNVNQEVVDFEKLDDYASAFQGHDVGFC 86 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGG-----GGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccc-----ceeeeeeecccccccccccccccccccc
Confidence 456799999999999999999999999 489999996544332221 244555555433 46778999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRT 265 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 265 (442)
++|.. ....+...+.++|+.++.+++++|++.++ +||++||..++.. +.+.|+++|+.
T Consensus 87 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------------~~~~Y~~~K~~ 145 (232)
T d2bkaa1 87 CLGTT---RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKGE 145 (232)
T ss_dssp CCCCC---HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHH
T ss_pred ccccc---ccccchhhhhhhcccccceeeecccccCccccccCCccccccC------------------ccchhHHHHHH
Confidence 99742 22334566788999999999999999998 8999999887532 12679999999
Q ss_pred HHHHHHHHHhhcCCc-EEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 266 AETLTMDYHRGAGVE-VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 266 ~E~~v~~~~~~~g~~-~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
+|..+.+ .+++ ++|+||+.+||++. ..+....+....+... +........++++|+|++++.++.++
T Consensus 146 ~E~~l~~----~~~~~~~IlRP~~i~G~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~I~~~dvA~a~i~~~~~~ 213 (232)
T d2bkaa1 146 VEAKVEE----LKFDRYSVFRPGVLLCDRQ---ESRPGEWLVRKFFGSL-----PDSWASGHSVPVVTVVRAMLNNVVRP 213 (232)
T ss_dssp HHHHHHT----TCCSEEEEEECCEEECTTG---GGSHHHHHHHHHHCSC-----CTTGGGGTEEEHHHHHHHHHHHHTSC
T ss_pred hhhcccc----ccccceEEecCceeecCCC---cCcHHHHHHHHHhhcc-----CCcccCCCeEEHHHHHHHHHHHHhcC
Confidence 9998755 4564 89999999999874 2344445555554432 22333445789999999999998887
Q ss_pred CCc-cEEec
Q 013467 345 HVG-PFNLG 352 (442)
Q Consensus 345 ~~g-~~~i~ 352 (442)
..+ .+.+.
T Consensus 214 ~~~~~~i~~ 222 (232)
T d2bkaa1 214 RDKQMELLE 222 (232)
T ss_dssp CCSSEEEEE
T ss_pred ccCCeEEEc
Confidence 665 55544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.5e-24 Score=189.28 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEecc
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
.|+||+||||||+||++++++|+++||+|++++|+...... ....+++++.+|+.+. ++.++|+|||++|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~-----~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-----EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-----SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccc-----ccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 57899999999999999999999999999999996443222 1345788999998764 5789999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAET 268 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~ 268 (442)
...... ..+++..++.+++++++++++ |||++||.+++++....+ .....|...|..+|+
T Consensus 77 ~~~~~~-------~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~------------~~~~~~~~~~~~~e~ 137 (205)
T d1hdoa_ 77 TRNDLS-------PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP------------PRLQAVTDDHIRMHK 137 (205)
T ss_dssp CTTCCS-------CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSC------------GGGHHHHHHHHHHHH
T ss_pred cCCchh-------hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcccc------------ccccccchHHHHHHH
Confidence 533211 114778899999999999998 999999998876532211 112468888988888
Q ss_pred HHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCC-c
Q 013467 269 LTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV-G 347 (442)
Q Consensus 269 ~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~-g 347 (442)
+++ +.|+++++|||+.+++... .....+..++.....+++++|+|++++.+++++.. |
T Consensus 138 ~l~----~~~~~~tiirp~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g 196 (205)
T d1hdoa_ 138 VLR----ESGLKYVAVMPPHIGDQPL-----------------TGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDG 196 (205)
T ss_dssp HHH----HTCSEEEEECCSEEECCCC-----------------CSCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTT
T ss_pred HHH----hcCCceEEEecceecCCCC-----------------cccEEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCCCC
Confidence 764 4689999999999986432 12334455666777899999999999999998864 4
Q ss_pred -cEEec
Q 013467 348 -PFNLG 352 (442)
Q Consensus 348 -~~~i~ 352 (442)
.+.+.
T Consensus 197 ~~~~~s 202 (205)
T d1hdoa_ 197 HSTYPS 202 (205)
T ss_dssp CEEEEE
T ss_pred EEEecC
Confidence 45443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=6.7e-24 Score=191.19 Aligned_cols=193 Identities=20% Similarity=0.192 Sum_probs=136.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccc---cccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---VEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~d~Vih~A~~ 190 (442)
+|+|||||||||||++++++|+++|+ +|+++.|..... ...++....|. .+.....+|+|||++|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~ 72 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGT 72 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------CTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------cccccccccchhhhhhccccchheeeeeeee
Confidence 46999999999999999999999998 666666643221 12333333333 23344568999999874
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETL 269 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~ 269 (442)
. .........+.+.|+.++.+++++|++.++ +|+++||.++++. ..+.|+.+|..+|..
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------------~~~~y~~~K~~~E~~ 132 (212)
T d2a35a1 73 T--IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQA 132 (212)
T ss_dssp C--HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHHH
T ss_pred e--ccccccccccccchhhhhhhcccccccccccccccccccccccc------------------cccchhHHHHHHhhh
Confidence 3 222334567889999999999999999997 8999999887632 126799999999988
Q ss_pred HHHHHhhcCC-cEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCCCcc
Q 013467 270 TMDYHRGAGV-EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 270 v~~~~~~~g~-~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~ 348 (442)
++ +.++ +++|+||+.|||+.... ++... +........ . ..++++|++|+|++++.+++++..|.
T Consensus 133 l~----~~~~~~~~I~Rp~~v~G~~~~~---~~~~~-----~~~~~~~~~-~--~~~~~i~v~DvA~ai~~~~~~~~~g~ 197 (212)
T d2a35a1 133 LQ----EQGWPQLTIARPSLLFGPREEF---RLAEI-----LAAPIARIL-P--GKYHGIEACDLARALWRLALEEGKGV 197 (212)
T ss_dssp HT----TSCCSEEEEEECCSEESTTSCE---EGGGG-----TTCCCC-------CHHHHHHHHHHHHHHHHHHTCCCSEE
T ss_pred cc----ccccccceeeCCcceeCCcccc---cHHHH-----HHHHHhhcc-C--CCCcEEEHHHHHHHHHHHHcCCCCCC
Confidence 74 3455 59999999999987421 11111 111111111 1 23467999999999999999998887
Q ss_pred EEec
Q 013467 349 FNLG 352 (442)
Q Consensus 349 ~~i~ 352 (442)
+++.
T Consensus 198 ~~~~ 201 (212)
T d2a35a1 198 RFVE 201 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.87 E-value=2.6e-21 Score=187.39 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=161.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
+.|+|+|||||||||++|+++|+++||+|+++.|+...... .......+++++.+|+.+. ++.++|+++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~ 79 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT 79 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence 34689999999999999999999999999999997543322 1122446889999998764 456788888765
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E 267 (442)
.... ..++..+.+++++|+++|+ ++++.||...... ........|..+|...|
T Consensus 80 ~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~--------------~~~~~~~~~~~~k~~~~ 133 (350)
T d1xgka_ 80 TSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL--------------YGPWPAVPMWAPKFTVE 133 (350)
T ss_dssp CSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG--------------TSSCCCCTTTHHHHHHH
T ss_pred cccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccccc--------------CCcccchhhhhhHHHHH
Confidence 3211 2577788999999999997 8888888654321 11222355778888877
Q ss_pred HHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcC-CCcEEecCCceeEeccCH-HHHHHHHHHHHcCCC
Q 013467 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFV-SDLVEGLMRLMEGEH 345 (442)
Q Consensus 268 ~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v-~Dva~ai~~~l~~~~ 345 (442)
.++ ...+++++++||+.+++.........+... ....+ .....+.+++....++++ +|+++++..++.++.
T Consensus 134 ~~~----~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~ 206 (350)
T d1xgka_ 134 NYV----RQLGLPSTFVYAGIYNNNFTSLPYPLFQME---LMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGP 206 (350)
T ss_dssp HHH----HTSSSCEEEEEECEEGGGCBSSSCSSCBEE---ECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCH
T ss_pred HHH----HhhccCceeeeeceeecccccccccccccc---ccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCCh
Confidence 765 445799999999988875321111100000 00111 112334456777888876 799999999997542
Q ss_pred ---Cc-cEEecCCCccCHHHHHHHHHHHhCCCCceEeCCC
Q 013467 346 ---VG-PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPN 381 (442)
Q Consensus 346 ---~g-~~~i~~~~~~s~~dl~~~l~~~~g~~~~~~~~~~ 381 (442)
.| .|++++ +.+|+.|+++.+.+++|++.++...|.
T Consensus 207 ~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 207 QKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred hhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 35 777775 679999999999999999988766653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=1.5e-22 Score=184.73 Aligned_cols=223 Identities=14% Similarity=0.088 Sum_probs=149.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCe--EEEEeCCCCCCccccccccCCCceeEEecccccc-----ccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDS--VIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----LLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~--V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 187 (442)
.|++|||||||||||+++++.|+++|++ |+.+.|.... .. . ...+++++.+|..+. .+.++|+|||+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~----~~-~-~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG----KE-K-IGGEADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH----HH-H-TTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH----HH-h-ccCCcEEEEeeeccccccccccccceeeEEE
Confidence 4679999999999999999999999975 5556664321 11 1 124667888887664 56789999999
Q ss_pred cccCCCCcc-------------cCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 188 ACPASPVHY-------------KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 188 A~~~~~~~~-------------~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
|+....... .........+|+.++.++++.+...+. .+.+.|+...+..... ...
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~~ 144 (252)
T d2q46a1 76 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-----------LNK 144 (252)
T ss_dssp CCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------GGG
T ss_pred EeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------ccc
Confidence 986432111 123445678999999999999998887 8888888766532110 011
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
.....|...+...+ .+..+.|++++++||+++||+...... .+.+.... ......+++|++|+
T Consensus 145 ~~~~~~~~~~~~~~----~~~~~~~~~~~ilRp~~v~g~~~~~~~----------~~~~~~~~---~~~~~~~~i~~~Dv 207 (252)
T d2q46a1 145 LGNGNILVWKRKAE----QYLADSGTPYTIIRAGGLLDKEGGVRE----------LLVGKDDE---LLQTDTKTVPRADV 207 (252)
T ss_dssp GGGCCHHHHHHHHH----HHHHHSSSCEEEEEECEEECSCTTSSC----------EEEESTTG---GGGSSCCEEEHHHH
T ss_pred ccccchhhhhhhhh----hhhhcccccceeecceEEECCCcchhh----------hhhccCcc---cccCCCCeEEHHHH
Confidence 11234555554444 344667999999999999998642110 00111111 11234579999999
Q ss_pred HHHHHHHHcCCCC-c-cEEecCCC---ccCHHHHHHHHHHHhC
Q 013467 334 VEGLMRLMEGEHV-G-PFNLGNPG---EFTMLELAQVVQETID 371 (442)
Q Consensus 334 a~ai~~~l~~~~~-g-~~~i~~~~---~~s~~dl~~~l~~~~g 371 (442)
|++++.+++++.. | +||+++++ ..++.|+.+.+.++.+
T Consensus 208 a~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 208 AEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp HHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred HHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 9999999998764 4 99998743 4567788777766553
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=1.8e-18 Score=158.26 Aligned_cols=209 Identities=15% Similarity=0.106 Sum_probs=150.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
++++|+++||||++.||+.++++|+++|++|++.+|+.. .+.+.....+...+.+|+.++ .+.+
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~----~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG----PLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 457889999999999999999999999999999998532 222222234567888998765 2236
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|++|||||........ ++++..+++|+.++..+.+++.. .+. .++++||....+
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~---------------- 141 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------------- 141 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------------
T ss_pred ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC----------------
Confidence 99999999976544322 34778999999999988887643 334 677777754432
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
......|+.+|.+.+.+++.++.+. |+++..|.||.+-.+.... .............++. .+.
T Consensus 142 -~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl~---------R~~ 207 (242)
T d1ulsa_ 142 -NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK----VPEKVREKAIAATPLG---------RAG 207 (242)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS----SCHHHHHHHHHTCTTC---------SCB
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc----CCHHHHHHHHhcCCCC---------CCC
Confidence 1223679999999999999987764 8999999999998765321 1233444444443332 355
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+|+|.++++++.+.. +| .+.+.+|.
T Consensus 208 ~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 238 (242)
T d1ulsa_ 208 KPLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (242)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhchhhCCCCCcEEEECCCc
Confidence 67999999999986543 46 67776664
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.79 E-value=1.5e-18 Score=159.27 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=146.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
++++|+++||||++.||+.+++.|+++|++|++.+|+.....+..... ...++.++.+|+.++ .+.+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH-cCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999998643222222222 235788899999775 2346
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|++|||||........ ++++..+++|+.++..+.+++ ++.+. ++|++||.... .
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~----------------~ 144 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW----------------L 144 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG----------------S
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc----------------c
Confidence 99999999976544332 347789999999988887765 44554 99999998754 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+... ............. .......+.
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~---~~~~~~~~~~~~~--------~~~~l~r~~ 213 (247)
T d2ew8a1 145 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTE---ASALSAMFDVLPN--------MLQAIPRLQ 213 (247)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------C--------TTSSSCSCC
T ss_pred cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccc---ccccchhHHHHHH--------HhccCCCCC
Confidence 22234689999999999999988754 899999999998765421 0000111111000 001122455
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+|+|+++++++.+.. +| ++.+.+|
T Consensus 214 ~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 214 VPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp CTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 67999999999986543 46 6766655
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=1.9e-18 Score=157.60 Aligned_cols=202 Identities=17% Similarity=0.122 Sum_probs=142.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+.... .++..+.+|+.++ .+.++
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 74 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQGPV 74 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 5678999999999999999999999999999999864322 2445677887664 22369
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|++|||||........ +++++.+++|+.++..+.+.+ ++.+. ++|++||..... +
T Consensus 75 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~----------------~ 138 (237)
T d1uzma1 75 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW----------------G 138 (237)
T ss_dssp SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------------
T ss_pred eEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc----------------C
Confidence 9999999976543322 347789999999988776654 45555 899999977541 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+ .|+++.+|.||.+..+.... +-+..........++ ..+..
T Consensus 139 ~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl---------~R~~~ 205 (237)
T d1uzma1 139 IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFIPA---------KRVGT 205 (237)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGCTT---------CSCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc----cCHHHHHHHHhcCCC---------CCCcC
Confidence 223468999999999999998775 48999999999987653210 012222233322222 23567
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+|+|+++++++.+.. +| ++.+.+|
T Consensus 206 pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 206 PAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 8999999999986543 46 6777665
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1e-18 Score=161.20 Aligned_cols=215 Identities=17% Similarity=0.183 Sum_probs=153.1
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------c
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~ 177 (442)
++.++|+++||||++.||+.++++|+++|++|++.+|+.+..+ .....+ ...++.++.+|+.++ .
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999998543222 121111 234678899999775 2
Q ss_pred cCCCCEEEEecccCCCCccc---CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~---~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+.++|++|||||......++ ++++..+++|+.++..+.+.+ ++.+. ++|++||...+
T Consensus 86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~--------------- 150 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE--------------- 150 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT---------------
T ss_pred cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchh---------------
Confidence 34699999999976554433 247778999999988887765 34444 89999997754
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.|..+..... +-+.....+....++ ..
T Consensus 151 -~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~---~~~e~~~~~~~~~pl---------~R 217 (255)
T d1fmca_ 151 -NKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPI---------RR 217 (255)
T ss_dssp -CCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSS---------CS
T ss_pred -ccccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc---CCHHHHHHHHhcCCC---------CC
Confidence 222334789999999999999988764 89999999999876532100 112333334443322 23
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+...+|+|.++++++.... +| ++.+.+|.
T Consensus 218 ~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 218 LGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 5568999999999986543 46 67777664
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.78 E-value=1.5e-18 Score=159.66 Aligned_cols=211 Identities=12% Similarity=0.017 Sum_probs=150.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~ 179 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+.....+ ....+ ...++.++.+|+.++ .+.
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~-~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDS-VVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHH-HHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 456799999999999999999999999999999985432221 22211 224678899999775 234
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++|||||........ +++...+++|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~--------------- 151 (251)
T d2c07a1 87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT--------------- 151 (251)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC---------------
Confidence 699999999976544332 347788999999988887765 44554 999999987541
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+... ...+.+...+....++. .+
T Consensus 152 -~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~----~~~~~~~~~~~~~~pl~---------R~ 217 (251)
T d2c07a1 152 -GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD----KISEQIKKNIISNIPAG---------RM 217 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCTTS---------SC
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccc----ccCHHHHHHHHhcCCCC---------CC
Confidence 22233679999999999999988754 899999999999876531 11234444444443321 35
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+|.++++++.+.. +| ++.+.+|
T Consensus 218 ~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 218 GTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 668999999999986543 46 6666655
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=2.9e-18 Score=156.82 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=149.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
++++|+++||||++.||+.+++.|+++|++|++.+|+.+.. +.+...+ ..++.++.+|+.++ .+.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG-KAMAAEL-ADAARYVHLDVTQPAQWKAAVDTAVTAFGG 80 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHh-hCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999999999864322 2222222 24677889998775 2236
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|++|||||........ +++++.+++|+.++..+.+.+ ++.+. ++|++||...+ .
T Consensus 81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~----------------~ 144 (244)
T d1nffa_ 81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL----------------A 144 (244)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------S
T ss_pred CeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc----------------c
Confidence 99999999976554332 347789999999988888755 34444 89999998754 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEecc
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 328 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (442)
+......|+.+|+..+.+++.++.+. |+++..|.||.+..+..... ..... ......+.
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~-------------~~~~~-----~~pl~R~~ 206 (244)
T d1nffa_ 145 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV-------------PEDIF-----QTALGRAA 206 (244)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS-------------CTTCS-----CCSSSSCB
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh-------------hHHHH-----hccccCCC
Confidence 22234689999999999999988764 89999999999876532100 00000 01123467
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+|+|+++++++.... +| ++.+.+|-
T Consensus 207 ~p~diA~~v~fL~s~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 207 EPVEVSNLVVYLASDESSYSTGAEFVVDGGT 237 (244)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CHHHHHHHHHHHhChhhCCCcCCEEEECCCe
Confidence 89999999999986542 46 67776663
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=9.6e-19 Score=160.19 Aligned_cols=210 Identities=17% Similarity=0.135 Sum_probs=149.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++|+++||||++.||+.+++.|+++|++|++.+|+.+.. +.+...+ ..++..+.+|+.++ .+.++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGA-QAISDYL-GANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHh-CCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 4678999999999999999999999999999999854322 2222222 23567888998764 23469
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|++|||||........ +++...+++|+.++..+.+++ ++.+. ++|++||...+. +
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~----------------~ 143 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM----------------G 143 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------C
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------------C
Confidence 9999999976554332 347778999999988888766 44554 999999977541 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccC
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 329 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 329 (442)
......|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+... .+.+.....+....++ ..+..
T Consensus 144 ~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl---------~R~~~ 210 (243)
T d1q7ba_ 144 NGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTR----ALSDDQRAGILAQVPA---------GRLGG 210 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----TSCHHHHHHHHTTCTT---------SSCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhh----hhhhhHHHHHHhcCCC---------CCCCC
Confidence 2233689999999999999988764 899999999988654211 0112222333333222 23567
Q ss_pred HHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 330 VSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 330 v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+|+|.++.+++.+.. +| .+.+.+|
T Consensus 211 pedvA~~v~fL~S~~s~~itGq~i~vdGG 239 (243)
T d1q7ba_ 211 AQEIANAVAFLASDEAAYITGETLHVNGG 239 (243)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 8999999999996543 45 7777665
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.5e-18 Score=156.54 Aligned_cols=212 Identities=17% Similarity=0.142 Sum_probs=149.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQI 184 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~V 184 (442)
.+++|+++||||++.||+.+++.|+++|++|++.+|+..... .+... ...+..+.+|+.+. .+.++|++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~-~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLD-SLVRE--CPGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHh--cCCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 467889999999999999999999999999999998633221 12222 24577888888765 34569999
Q ss_pred EEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH-----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~-----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||||........ ++++..+++|+.++..+.+.+. +.+. ++|++||..... +..
T Consensus 81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------------~~~ 144 (244)
T d1pr9a_ 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc----------------ccc
Confidence 9999976554322 3477789999999888777553 2234 899999987542 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+. |+++..|.||.|..+........ ...........++ ..+...+
T Consensus 145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~~~pl---------~R~~~pe 213 (244)
T d1pr9a_ 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD--PHKAKTMLNRIPL---------GKFAEVE 213 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCS--HHHHHHHHTTCTT---------CSCBCHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccC--hHHHHHHHhcCCC---------CCCcCHH
Confidence 33679999999999999988754 89999999999876532100011 1223333333222 2466789
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
|+|.++++++.+.. +| .+.+.+|
T Consensus 214 evA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 214 HVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 99999999986543 45 6666655
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.77 E-value=2.1e-18 Score=159.56 Aligned_cols=215 Identities=16% Similarity=0.085 Sum_probs=151.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~ 179 (442)
+++|+++||||++.||+.++++|+++|++|++.+|+.+...+.+.+.+ ...++.++.+|+.++ .+.
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 84 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999999996443323222222 234677889999775 234
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC--eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA--RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~--r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
++|++|||||...+.... +++++.+++|+.++..+.+++ ++.+. .+|++||....
T Consensus 85 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~--------------- 149 (261)
T d1geea_ 85 KLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK--------------- 149 (261)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT---------------
T ss_pred CCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhc---------------
Confidence 699999999976554332 247788999999988887765 44443 58899997654
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchH-HHHHHHHHcCCCcEEecCCceeE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVV-SNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.|..+.... ... ......+....++ .
T Consensus 150 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~---~~~~~~~~~~~~~~~pl---------~ 216 (261)
T d1geea_ 150 -IPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAE---KFADPEQRADVESMIPM---------G 216 (261)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHH---HHHSHHHHHHHHTTCTT---------S
T ss_pred -ccCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhh---hcCCHHHHHHHHhcCCC---------C
Confidence 122234689999999999999987754 8999999999987653210 000 1122222222222 2
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
.+...+|+|.++++++.... +| .+.+.+|..
T Consensus 217 R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 217 YIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCee
Confidence 35678999999999986543 46 777777643
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.77 E-value=2.7e-18 Score=158.99 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=146.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~------------~~ 178 (442)
+++|+++||||++.||+.++++|+++|++|++.+|+.....+.....+ ...++.++.+|+.++ .+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999986433322222211 234678889999775 22
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.++|++|||||........ +++...+++|+.++..+.+++ ++.+. ++|++||.....
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------------- 147 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-------------- 147 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee--------------
Confidence 4699999999976554333 347789999999988877665 45555 999999987541
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCc-------EEec
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL-------TVYG 319 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 319 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+.. ...+......... ..+.
T Consensus 148 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 217 (260)
T d1x1ta1 148 --ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLV--------EKQISALAEKNGVDQETAARELLS 217 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------------------CHH
T ss_pred --ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhh--------hhhhhhhhhhcCCChHHHHHHHHH
Confidence 22234679999999999999988764 89999999999876532 1111111000000 0000
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.......+...+|+|+++++++.+.. +| ++.+.+|
T Consensus 218 ~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 218 EKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp HHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 00112246678999999999986543 35 6776655
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.77 E-value=1.9e-18 Score=159.48 Aligned_cols=215 Identities=18% Similarity=0.149 Sum_probs=150.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
+.++|+++||||+++||+.+++.|+++|++|++.+|+.+...+ ....+ ..++..+.+|+.++ .+.+
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~-~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARA-TAAEI-GPAACAIALDVTDQASIDRCVAELLDRWGS 79 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh-CCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4577899999999999999999999999999999986432222 22222 34678889998775 2246
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC-C-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|++|||||........ ++++..+++|+.++..+.+++. +.+ . ++|++||...+
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~---------------- 143 (256)
T d1k2wa_ 80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR---------------- 143 (256)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT----------------
T ss_pred ccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc----------------
Confidence 99999999976543322 3477889999999988887542 222 3 89999998754
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHH-----------HHHHHcCCCcE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNF-----------VAQALRKEPLT 316 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 316 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+... .....+ ...+....+
T Consensus 144 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~P-- 217 (256)
T d1k2wa_ 144 RGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD----GVDAKFADYENLPRGEKKRQVGAAVP-- 217 (256)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHH----HHHHHHHHHHTCCTTHHHHHHHHHST--
T ss_pred cccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhh----hhhhhhhhhccCChHHHHHHHHhcCC--
Confidence 223334789999999999999988754 899999999988876420 011111 111111111
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCccC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEFT 358 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~s 358 (442)
...+...+|+|.++++++.... +| .+.+.+|..+|
T Consensus 218 -------lgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 218 -------FGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp -------TSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred -------CCCCcCHHHHHHHHHHHhCchhCCccCceEEECcchhhC
Confidence 1235678999999999886443 46 78887775543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.77 E-value=1e-17 Score=155.76 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=149.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
++++|+++||||+++||+.++++|+++|++|++.+|+....++...+......+.++.+|+.++ .+.+
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3578899999999999999999999999999999986432222222222334677889998765 2346
Q ss_pred CCEEEEecccCCCCc---cc---CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVH---YK---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~---~~---~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+|++|||||...... .. ++++..+++|+.++..+.+++ ++.+. ++|++||...+..
T Consensus 83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~------------- 149 (268)
T d2bgka1 83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA------------- 149 (268)
T ss_dssp CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC-------------
T ss_pred cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccc-------------
Confidence 999999999754321 11 246778999999988888766 33454 8999998765411
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.......|+.+|.+.+.+++.++.+ .|+++.+|.||.+-.+.........-............ ....
T Consensus 150 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~--------~~gr 219 (268)
T d2bgka1 150 --GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN--------LKGT 219 (268)
T ss_dssp --CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS--------SCSC
T ss_pred --ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc--------cCCC
Confidence 1111236999999999999998775 48999999999998775321111111111111111111 1113
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
+...+|+|.++++++.+.. .| ++.+.+|-
T Consensus 220 ~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 220 LLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 252 (268)
T ss_dssp CCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHhChhhCCccCceEEECcCc
Confidence 5678999999999996542 46 77777663
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.77 E-value=5.9e-18 Score=155.73 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=146.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+.+...+ ....+ ..++.++.+|+.++ .+.++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAA-TAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh-CCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 467899999999999999999999999999999986432222 11221 24678899998765 23469
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|++|||||........ ++++..+++|+.++..+.+++ ++.+. ++|++||...+ .+
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~----------------~~ 144 (254)
T d1hdca_ 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL----------------MG 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------SC
T ss_pred cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc----------------cc
Confidence 9999999976554332 246778999999998888766 34454 99999998754 22
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec-c
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF-Q 328 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 328 (442)
......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+. .........-... .......+ .
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~------------~~~~~~~~~~~~~-~~~pl~R~g~ 211 (254)
T d1hdca_ 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM------------TAETGIRQGEGNY-PNTPMGRVGN 211 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------------HHHHTCCCSTTSC-TTSTTSSCB-
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc------------chhcCHHHHHHHH-hCCCCCCCCC
Confidence 2234789999999999999988754 8999999999886531 1111111000000 00011122 2
Q ss_pred CHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 329 FVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 329 ~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+|+|.++++++.+.. .| .+.+.+|-
T Consensus 212 ~PedvA~~v~fL~S~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 212 EPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence 47999999999996543 46 77777663
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.77 E-value=2.5e-18 Score=158.86 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=151.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccc---ccccCCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV---MHHFGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~D~~~~------------~~ 178 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+.....+.. .......++..+.+|+.++ .+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999998643222111 1112344678889998775 23
Q ss_pred CCCCEEEEecccCCCCc-c----cCChhHHHHHhHHHHHHHHHHH----HHcC-CeEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~-~----~~~~~~~~~~nv~gt~~ll~~a----~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|++|||||...... . .++++..+++|+.++..+.+++ ++.+ .++|++||...+
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~-------------- 147 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI-------------- 147 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT--------------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhc--------------
Confidence 46999999999654321 2 2347789999999999888766 3334 399999997754
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc----CCCchHHHHHHHHHcCCCcEEecCC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI----DDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+.... ........+...+....++
T Consensus 148 --~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl------ 219 (258)
T d1iy8a_ 148 --RGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPS------ 219 (258)
T ss_dssp --SBCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTT------
T ss_pred --cCCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCC------
Confidence 222334789999999999999987754 8999999999987642100 0000112222333333222
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
..+...+|+|.++++++.... .| .+.+.+|..
T Consensus 220 ---~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 220 ---KRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp ---CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred ---CCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 235668999999999996543 46 677776643
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.7e-18 Score=158.93 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=147.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++|+++||||++.||+.+++.|+++|++|++.+|+.+. ....+. .+..++.+|+.+. .+.++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 77 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG--KEVAEA---IGGAFFQVDLEDERERVRFVEEAAYALGRV 77 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH--HHHHHH---HTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHH---cCCeEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999986432 112222 2456788898775 23469
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
|++|||||...+.... +++++.+++|+.++.++.+++ ++.+. ++|++||...+ .+
T Consensus 78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~----------------~~ 141 (248)
T d2d1ya1 78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL----------------FA 141 (248)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT----------------SB
T ss_pred CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc----------------cc
Confidence 9999999976554333 247778999999998888776 34454 89999998764 22
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
......|+.+|+..+.+++.++.+. |+++.+|.||.+-.+.... ........+...+.... ....+
T Consensus 142 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---------pl~R~ 212 (248)
T d2d1ya1 142 EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLH---------ALRRL 212 (248)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTS---------TTSSC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcC---------CCCCC
Confidence 3334789999999999999988764 8999999999886542100 00000001111111111 12246
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
...+|+|.++++++.+.. .| .+.+.+|-.
T Consensus 213 ~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 213 GKPEEVAEAVLFLASEKASFITGAILPVDGGMT 245 (248)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHhCchhcCCCCcEEEcCcCcc
Confidence 678999999999986542 46 777776643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=3.3e-18 Score=156.45 Aligned_cols=212 Identities=17% Similarity=0.135 Sum_probs=147.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEE
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQI 184 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~V 184 (442)
..++|+++||||+++||+.++++|+++|++|++.+|+.+... .+.. +..++..+.+|+.+. .+.++|++
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV-SLAK--ECPGIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHH--HSTTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHH--hcCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 356789999999999999999999999999999998532211 1111 224677888898765 23469999
Q ss_pred EEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----H-cCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 185 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----R-VGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 185 ih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~-~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|||||........ ++++..+++|+.++..+.+++. + .+. ++|++||...+. +..
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 142 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP 142 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc----------------cCC
Confidence 9999976554332 2467789999999988887653 2 234 899999986542 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+. |+++.+|.||.+..+........ ..+...+....++ ..+...+
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~pl---------~R~~~pe 211 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD--PEFARKLKERHPL---------RKFAEVE 211 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC--HHHHHHHHHHSTT---------SSCBCHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCC--HHHHHHHHhcCCC---------CCCcCHH
Confidence 33679999999999999988754 89999999999876421100000 1222223322222 2356689
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
|+|+++++++.+.. +| ++.+.+|
T Consensus 212 eva~~v~fL~S~~s~~itG~~i~vDGG 238 (242)
T d1cyda_ 212 DVVNSILFLLSDRSASTSGGGILVDAG 238 (242)
T ss_dssp HHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred HHHHHHHHHhCchhcCcCCceEEeCcc
Confidence 99999999986543 45 6777665
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.77 E-value=1.8e-18 Score=159.26 Aligned_cols=214 Identities=15% Similarity=0.104 Sum_probs=148.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
+.++|+++||||+++||+.+++.|+++|++|++.+|+.+..++.....-...++.++.+|+.++ .+.+
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3578899999999999999999999999999999986432222111222345788899999775 2346
Q ss_pred CCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcC--CeEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
+|++|||||........ +++++.+++|+.++..+.+++. +.+ .++|++||...+
T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~---------------- 146 (251)
T d1zk4a1 83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF---------------- 146 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT----------------
T ss_pred ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecccee----------------
Confidence 99999999976554333 2367799999999988888763 334 379999997654
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|.+.+.+++.++.+ .|+++..|.||.+..+....... .......... . ...
T Consensus 147 ~~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~~~~~--~-------pl~ 214 (251)
T d1zk4a1 147 VGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG---AEEAMSQRTK--T-------PMG 214 (251)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT---HHHHHTSTTT--C-------TTS
T ss_pred ccCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC---HHHHHHHHhC--C-------CCC
Confidence 12222368999999999999887654 48999999999987643110000 1111111111 1 112
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+|.++++++.... +| .+.+.+|
T Consensus 215 R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 215 HIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 46678999999999986543 46 6777655
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.76 E-value=8.5e-18 Score=155.34 Aligned_cols=217 Identities=13% Similarity=0.039 Sum_probs=150.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------ccC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~~ 179 (442)
.+++|+++||||++.||+.+++.|+++|++|++.+|+.+..++...+.. ...++.++.+|+.++ .+.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999999999999985432222211111 234677888998764 123
Q ss_pred -CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 180 -EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 180 -~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
.+|++|||||........ ++++..+++|+.++..+.+++ ++.+. ++|++||....
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~--------------- 149 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA--------------- 149 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT---------------
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccc---------------
Confidence 489999999976543322 347779999999988887765 34444 89999997654
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|...+.+++.++.+. |+++.+|.||.|..+.... .........+..+....++.
T Consensus 150 -~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~--------- 219 (259)
T d2ae2a_ 150 -LAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR--------- 219 (259)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC---------
T ss_pred -cccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC---------
Confidence 122234789999999999999988764 8999999999987643110 00111122333334333322
Q ss_pred eccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
.+...+|+|.++++++.... +| .+.+.+|
T Consensus 220 R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 220 RMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 252 (259)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 35568999999999986543 46 6666655
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.76 E-value=3.9e-18 Score=156.17 Aligned_cols=208 Identities=14% Similarity=0.043 Sum_probs=147.8
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccCCCCE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLLEVDQ 183 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~~~d~ 183 (442)
.|+||||++.||+.++++|+++|++|++.+++.....+.+...+ ...++.++.+|+.++ .+.++|+
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV 82 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 79999999999999999999999999988765433333332222 134677889998775 2346999
Q ss_pred EEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 184 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 184 Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
+|||||........ +++++.+++|+.++..+.+++ ++.+. ++|++||...+- +..
T Consensus 83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------------~~~ 146 (244)
T d1edoa_ 83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------------GNI 146 (244)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------CCT
T ss_pred cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------------CCC
Confidence 99999976554332 347789999999988887765 44454 999999987541 222
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+... .+...+........++ ..+...+
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl---------~R~~~p~ 213 (244)
T d1edoa_ 147 GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA----KLGEDMEKKILGTIPL---------GRTGQPE 213 (244)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH----TTCHHHHHHHHTSCTT---------CSCBCHH
T ss_pred CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH----HhhHHHHHHHHhcCCC---------CCCcCHH
Confidence 34689999999999999988764 899999999998654211 1112333333333322 2356689
Q ss_pred HHHHHHHHHHcCCC----Cc-cEEecCC
Q 013467 332 DLVEGLMRLMEGEH----VG-PFNLGNP 354 (442)
Q Consensus 332 Dva~ai~~~l~~~~----~g-~~~i~~~ 354 (442)
|+|.++++++..+. +| .+.+.+|
T Consensus 214 dvA~~v~fLa~S~~a~~itG~~i~vdGG 241 (244)
T d1edoa_ 214 NVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HHHHHHHHHHCCchhcCCcCCeEEeCCC
Confidence 99999999865443 45 6666655
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.75 E-value=6.3e-18 Score=156.17 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=134.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEecccccc------------cc-
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEP------------LL- 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~------------~~- 178 (442)
.+++|+++||||++.||..+++.|+++|++|++.+|+.....+..... ....++..+.+|+.++ .+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999999999998643222211111 1234678888998764 22
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
..+|++|||||........ ++++..+++|+.++..+.+++ ++.+. ++|++||....
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~--------------- 149 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGV--------------- 149 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------------
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccc---------------
Confidence 2489999999976543322 347789999999988888765 44454 99999997653
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+.... ..-+.......... ....
T Consensus 150 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~---~~~~~~~~~~~~~~---------pl~R 216 (259)
T d1xq1a_ 150 -VSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEA---VYDDEFKKVVISRK---------PLGR 216 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred -ccccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhh---hchHHHHHHHHhCC---------CCCC
Confidence 122234789999999999999988764 8999999999987664210 00011111111111 1224
Q ss_pred ccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+...+|+|.++++++.+.. +| .+.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG 248 (259)
T d1xq1a_ 217 FGEPEEVSSLVAFLCMPAASYITGQTICVDGG 248 (259)
T ss_dssp -CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCcEEEeCCC
Confidence 5567999999999986432 45 5666555
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=9.9e-18 Score=153.89 Aligned_cols=215 Identities=17% Similarity=0.168 Sum_probs=148.1
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
+.++|+++||||++.||+.+++.|+++|++|++.+|+.+.. +.+... ..++.++.+|+.+. .+.+
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~-~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG-RALEQE--LPGAVFILCDVTQEDDVKTLVSETIRRFGR 79 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHh--cCCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 45788999999999999999999999999999999853221 112222 24678889998774 2346
Q ss_pred CCEEEEecccCCCC-ccc----CChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 181 ~d~Vih~A~~~~~~-~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
+|++|||||..... ... +++++.+++|+.++..+.+++ ++.+.++|++||.....
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~---------------- 143 (250)
T d1ydea1 80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------------- 143 (250)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------
T ss_pred CCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc----------------
Confidence 99999999965332 222 237788999999988888766 34445999999987541
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCc--cCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMC--IDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.+|.+.+.+++.++.+. |+++..|.||.|..+... ..........+.......++ ..
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------~R 214 (250)
T d1ydea1 144 GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL---------GR 214 (250)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT---------SS
T ss_pred cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCC---------CC
Confidence 22234689999999999999988754 899999999998654210 00000011222233332222 24
Q ss_pred ccCHHHHHHHHHHHHcCCC--Cc-cEEecCCC
Q 013467 327 FQFVSDLVEGLMRLMEGEH--VG-PFNLGNPG 355 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~~ 355 (442)
+...+|+|.++++++.+.. +| .+.+.+|-
T Consensus 215 ~g~p~eva~~v~fL~Sda~~itG~~i~vDGG~ 246 (250)
T d1ydea1 215 MGQPAEVGAAAVFLASEANFCTGIELLVTGGA 246 (250)
T ss_dssp CBCHHHHHHHHHHHHHHCTTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhCccCCCcCCeEEECCCc
Confidence 5678999999999885321 35 67776664
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=5.5e-18 Score=155.82 Aligned_cols=215 Identities=18% Similarity=0.083 Sum_probs=149.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~ 179 (442)
+++|+++||||+++||+.++++|+++|++|++.+|+.+...+...+.. ...++.++.+|+.++ .+.
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG 82 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999986433222221111 134677889998775 234
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++|||||........ ++++..+++|+.++..+.+.+. +.+. ++|++||.....
T Consensus 83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~--------------- 147 (251)
T d1vl8a_ 83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE--------------- 147 (251)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc---------------
Confidence 699999999975543322 2477889999999988887653 3444 899999865421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+....... -......+....++. .+
T Consensus 148 ~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~pl~---------R~ 216 (251)
T d1vl8a_ 148 VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS--DPEKLDYMLKRIPLG---------RT 216 (251)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT--CHHHHHHHHHTCTTS---------SC
T ss_pred ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC--CHHHHHHHHhcCCCC---------CC
Confidence 122223679999999999999988754 8999999999997764310000 012233333333322 34
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+|+++++++.... +| ++.+.+|
T Consensus 217 ~~pedvA~~v~fL~S~~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 217 GVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 247 (251)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence 457999999999886543 46 6777665
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.2e-17 Score=152.05 Aligned_cols=205 Identities=14% Similarity=0.094 Sum_probs=144.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEe
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHL 187 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~ 187 (442)
+++|+++||||++.||+.++++|+++|++|++.+|+. +.+.. ....++.+|+.+. .+.++|++|||
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~----~~l~~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE----ELLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH----HHHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH----HHHHh----cCCcEEEcchHHHHHHHHHHhCCCcEEEec
Confidence 4678999999999999999999999999999999853 22211 2345667777553 44579999999
Q ss_pred cccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCCh
Q 013467 188 ACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC 258 (442)
Q Consensus 188 A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~ 258 (442)
||........ +++++.+++|+.++..+.+++ ++.+. ++|++||.... .+......
T Consensus 74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~----------------~~~~~~~~ 137 (234)
T d1o5ia_ 74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVI----------------SPIENLYT 137 (234)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT----------------SCCTTBHH
T ss_pred ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccccc----------------cccccccc
Confidence 9965443322 246778899999988877765 44555 89999997654 23333468
Q ss_pred hHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
|+.+|.+.+.+++.++.+. |+++.+|.||++-.+....... +.....+....++ ..+...+|+|.
T Consensus 138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~---~~~~~~~~~~~pl---------~R~~~pediA~ 205 (234)
T d1o5ia_ 138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS---EEKKKQVESQIPM---------RRMAKPEEIAS 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC---HHHHHHHHTTSTT---------SSCBCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcC---HHHHHHHHhcCCC---------CCCcCHHHHHH
Confidence 9999999999999987754 8999999999987764211000 1222222332222 24667899999
Q ss_pred HHHHHHcCCC---Cc-cEEecCC
Q 013467 336 GLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 336 ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++++++.... +| ++.+.+|
T Consensus 206 ~v~fL~S~~s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 206 VVAFLCSEKASYLTGQTIVVDGG 228 (234)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHhChhhcCCcCcEEEECcc
Confidence 9999986543 45 6767655
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.75 E-value=2.2e-17 Score=152.07 Aligned_cols=210 Identities=18% Similarity=0.113 Sum_probs=146.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc--cccccCCCceeEEecccccc-------------c
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN--VMHHFGNPNFELIRHDVVEP-------------L 177 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~D~~~~-------------~ 177 (442)
..++|+|+||||+++||..++++|+++|.+|++++|..+..... +.......++.++.+|+... .
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998865432211 11222445788888888632 1
Q ss_pred cCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHH----c--C--CeEEEeecCccccCCCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR----V--G--ARFLLTSTSEVYGDPLQHPQKETYWGN 249 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~----~--g--~r~i~iSS~~vy~~~~~~~~~E~~~~~ 249 (442)
+.++|++|||||.. ..+.++.++++|+.|+.++.+++.. . + .++|++||...+
T Consensus 82 ~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~--------------- 142 (254)
T d1sbya1 82 LKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF--------------- 142 (254)
T ss_dssp HSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT---------------
T ss_pred cCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc---------------
Confidence 23699999999954 3456889999999999998887632 1 1 379999997765
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCceeE
Q 013467 250 VNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTR 325 (442)
Q Consensus 250 ~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (442)
.+......|+.+|.+...+++.++.+. |+++..|.||.|..+.... .........+.....+.
T Consensus 143 -~~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------------ 209 (254)
T d1sbya1 143 -NAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH------------ 209 (254)
T ss_dssp -SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTS------------
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccC------------
Confidence 233334689999999999999988754 8999999999998651100 00000001111111111
Q ss_pred eccCHHHHHHHHHHHHcCCCCc-cEEecCC
Q 013467 326 SFQFVSDLVEGLMRLMEGEHVG-PFNLGNP 354 (442)
Q Consensus 326 ~~v~v~Dva~ai~~~l~~~~~g-~~~i~~~ 354 (442)
.....+++|++++.+++....| ++.+.+|
T Consensus 210 ~~~~~e~va~~~~~~~~~~~tG~vi~vdgG 239 (254)
T d1sbya1 210 PTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHhhhCCCCCCEEEECCC
Confidence 2235799999999999877777 6666655
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.74 E-value=2.4e-17 Score=152.26 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=148.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
+|++|||||+++||+.+++.|+++|++|++.+|+.+..++ ....+ ...++.++.+|+.++ .+.++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT-TLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 5689999999999999999999999999999986432221 11111 234678899998775 23469
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH------HcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK------RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~------~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
|++|||||........ +++++.+++|+.++..+.+++. +.+. ++|++||...+
T Consensus 81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~---------------- 144 (257)
T d2rhca1 81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK---------------- 144 (257)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT----------------
T ss_pred CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc----------------
Confidence 9999999976544332 3477899999999999998774 2343 89999997654
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc-------CCCchHHHHHHHHHcCCCcEEecC
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI-------DDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+.... ......+.....+....++
T Consensus 145 ~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Pl----- 219 (257)
T d2rhca1 145 QGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPI----- 219 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTT-----
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCC-----
Confidence 222334689999999999999998874 7999999999886542100 0000012223333333222
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+|.++++++.... +| .+.+.+|
T Consensus 220 ----gR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 220 ----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp ----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----CCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 235678999999999996442 35 6666654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.74 E-value=2.5e-17 Score=152.00 Aligned_cols=216 Identities=14% Similarity=0.085 Sum_probs=148.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------cc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~ 178 (442)
.+++|+|+||||++.||+.++++|+++|++|++.+|+.+...+ ..+.+ ....+.++.+|+.+. .+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~-~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDE-CLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999996432222 11111 235677888998764 12
Q ss_pred -CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 -LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 -~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
..+|++||+||........ +++...+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------------- 148 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------------- 148 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------------
T ss_pred CCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc-------------
Confidence 2489999999976544332 2477899999999988877653 3444 999999987642
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++++. |+++.+|.||.+..+.... ............+....++
T Consensus 149 ---~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl-------- 217 (258)
T d1ae1a_ 149 ---ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM-------- 217 (258)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT--------
T ss_pred ---ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCC--------
Confidence 22334789999999999999988764 8999999999998764210 0110112233333332222
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+|.++++++.+.. .| .+.+.+|
T Consensus 218 -gR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 218 -GRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 251 (258)
T ss_dssp -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCC
Confidence 236678999999999996443 46 6666655
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.74 E-value=1.8e-17 Score=153.23 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=148.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------cc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~ 178 (442)
+.++|+++||||++.||+.+++.|+++|++|++.+|+.+... .....+ ...++..+.+|+.++ .+
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE-KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999998643222 122211 234678889998765 23
Q ss_pred CCCCEEEEecccCCC-Cccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~-~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.++|++|||||.... .... +++...+++|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~------------- 147 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK------------- 147 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS-------------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc-------------
Confidence 469999999996543 2222 347788999999988887765 33444 999999977542
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCc------------cCCCchHHHHHHHHHcCC
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMC------------IDDGRVVSNFVAQALRKE 313 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~------------~~~~~~~~~~~~~~~~~~ 313 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+... .........+...+....
T Consensus 148 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T d1zema1 148 ---GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 224 (260)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcC
Confidence 22233689999999999999988764 899999999998765210 000111122223333332
Q ss_pred CcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 314 PLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 314 ~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++ ..+...+|+|.++++++.... +| ++.+.+|
T Consensus 225 Pl---------~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 225 PM---------RRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp TT---------SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred CC---------CCCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 22 134567999999999997543 35 5666543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.74 E-value=2.1e-17 Score=153.27 Aligned_cols=218 Identities=13% Similarity=0.053 Sum_probs=141.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc----cCCCceeEEecccccc------------
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH----FGNPNFELIRHDVVEP------------ 176 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~------------ 176 (442)
+.++|+++||||++.||+.++++|+++|++|++.+|+....++...+. ....++.++.+|+.++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999998643222111111 1234688899999765
Q ss_pred ccCCCCEEEEecccCCCCc--------ccCChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecC-ccccCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVH--------YKFNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTS-EVYGDPLQHPQK 243 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~--------~~~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~-~vy~~~~~~~~~ 243 (442)
.+.++|++|||||...+.. ..++++..+++|+.++..+.+++. +.+..+|+++|. +.+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~--------- 152 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL--------- 152 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS---------
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc---------
Confidence 2346999999999653221 123477889999999888877663 334455555554 322
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC-----CCchHHHHHHHHHcCCCc
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPL 315 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~ 315 (442)
.+......|+.+|.+.+.+++.++.+. |+++..|.||.|-.+..... ...........+....++
T Consensus 153 -------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 225 (264)
T d1spxa_ 153 -------HATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA 225 (264)
T ss_dssp -------SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT
T ss_pred -------ccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC
Confidence 122223679999999999999988754 89999999999876532100 000011112222222221
Q ss_pred EEecCCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCC
Q 013467 316 TVYGDGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPG 355 (442)
Q Consensus 316 ~~~~~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~ 355 (442)
..+...+|+|+++++++.++ -.| .+.+.+|.
T Consensus 226 ---------~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 226 ---------GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 261 (264)
T ss_dssp ---------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred ---------CCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence 23556899999999998643 356 67776663
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.1e-17 Score=155.62 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=148.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccc---cccc---cCCCceeEEecccccc---------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN---VMHH---FGNPNFELIRHDVVEP--------- 176 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~---~~~~---~~~~~v~~~~~D~~~~--------- 176 (442)
-.+++|+++||||++.||+.++++|+++|++|++.+|+.....+. +... ....++..+.+|+.++
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 346788999999999999999999999999999999864322211 1111 1234678899999775
Q ss_pred ---ccCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHH----cCC-eEEEeecCccccCCCCCCCCC
Q 013467 177 ---LLLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQKE 244 (442)
Q Consensus 177 ---~~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~----~g~-r~i~iSS~~vy~~~~~~~~~E 244 (442)
.+.++|++|||||........ ++++..+++|+.++..+.+++.. .+. ++|++|+....
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~---------- 157 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA---------- 157 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT----------
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc----------
Confidence 234699999999965543332 34777899999999988887642 333 78877765432
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
.......|+.+|.+.+.+++.++.+. |+++.+|.||.|..+.........-..+........+
T Consensus 158 -------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~p------- 223 (297)
T d1yxma1 158 -------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIP------- 223 (297)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGST-------
T ss_pred -------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCC-------
Confidence 11223679999999999999988764 8999999999997764211111111111111111111
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
...+...+|+|.++++++.+.. +| ++.+.+|.
T Consensus 224 --lgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 224 --AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGR 259 (297)
T ss_dssp --TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcCh
Confidence 1235567999999999996543 46 77777763
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.73 E-value=3.4e-18 Score=157.41 Aligned_cols=214 Identities=18% Similarity=0.187 Sum_probs=145.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
+++|+++||||++.||+.+++.|+++|++|++.+|+.+.. +.+...+ ..+..++.+|+.+. .+.++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG-QQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHh-CCCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999999999999854322 2222222 24567788888764 23469
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeecCccccCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPI 253 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~ 253 (442)
|++|||||...+.... +++++.+++|+.++..+++++. +.+-++|++||...+ .+.
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~----------------~~~ 145 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW----------------LPI 145 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT----------------SCC
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh----------------cCc
Confidence 9999999976554332 3477899999999888877663 333489999997754 222
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCcc-CCCchHHHHHHHHHcCCCcEEecCCceeEec
Q 013467 254 GVRSCYDEGKRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 327 (442)
Q Consensus 254 ~~~~~Y~~sK~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (442)
.....|+.+|.+.+.+++.++.+. ++++.+|.||.+..+.... ..... ......... .....-.+
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~----~~~~~~~~~-----~~~~~gr~ 216 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGV----SKEMVLHDP-----KLNRAGRA 216 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTC----CHHHHBCBT-----TTBTTCCE
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchh----hHHHHHhCc-----cccccCCC
Confidence 334689999999999998877653 5999999999987542100 00000 001111100 00111246
Q ss_pred cCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 328 QFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 328 v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
...+|+|+++++++.+.. +| .+++.+|
T Consensus 217 ~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 217 YMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp ECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 678999999999986543 46 6766654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.5e-17 Score=149.15 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=148.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc--------ccCCCCEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP--------LLLEVDQIY 185 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~Vi 185 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+.. .+........+.....|+... .+.++|++|
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~----~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lV 79 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES----KLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhccCCceeeeeccccccccccccccccceeEE
Confidence 56789999999999999999999999999999998532 222222334566666665443 334799999
Q ss_pred EecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCC
Q 013467 186 HLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVR 256 (442)
Q Consensus 186 h~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~ 256 (442)
|+||........ +.+...+++|+.++..+.+++. +.+. ++|++||...-- .+....
T Consensus 80 n~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~---------------~~~~~~ 144 (245)
T d2ag5a1 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV---------------KGVVNR 144 (245)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT---------------BCCTTB
T ss_pred ecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc---------------CCccch
Confidence 999976654333 2477889999999888877653 3444 899999864210 123334
Q ss_pred ChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCcc--CCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 257 SCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 257 ~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
..|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+.... ........+...+....++ ..+...+
T Consensus 145 ~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------~R~~~pe 215 (245)
T d2ag5a1 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT---------GRFATAE 215 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT---------SSCEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCC---------CCCcCHH
Confidence 789999999999999988764 8999999999987753210 0001112233333333222 2355679
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
|+|+++.+++.++. +| ++.+.+|.
T Consensus 216 dva~~v~fL~s~~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 216 EIAMLCVYLASDESAYVTGNPVIIDGGW 243 (245)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred HHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence 99999999997653 46 67776653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.72 E-value=1.1e-16 Score=147.42 Aligned_cols=214 Identities=18% Similarity=0.118 Sum_probs=144.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------ccCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LLLEVD 182 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~~~~d 182 (442)
|.++||||++.||+.++++|+++|++|++.+|+.+..+ .+...+ ...++.++.+|+.++ .+.++|
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK-AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 35799999999999999999999999999998643222 121111 234678889999775 234699
Q ss_pred EEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcC-C-eEEEeecCccccCCCCCCCCCCCCCCCCC
Q 013467 183 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNP 252 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~ 252 (442)
++|||||........ ++++..+++|+.++..+++++ ++.+ . ++|++||...+ .+
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~----------------~~ 144 (255)
T d1gega_ 81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH----------------VG 144 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT----------------SC
T ss_pred EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc----------------cc
Confidence 999999975543322 347789999999998888765 3334 3 79999997754 22
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHc--CCCcE----EecCCce
Q 013467 253 IGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALR--KEPLT----VYGDGKQ 323 (442)
Q Consensus 253 ~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~ 323 (442)
......|+.+|.+.+.+++.++.+. |+++.+|.||.+-.+. ...+...... +.... .+.....
T Consensus 145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (255)
T d1gega_ 145 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM--------WAEIDRQVSEAAGKPLGYGTAEFAKRIT 216 (255)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH--------HHHHHHHHHHHHTCCTTHHHHHHHTTCT
T ss_pred CcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChH--------HhhhhhhhHhhhcccchhHHHHHHhcCC
Confidence 2334679999999999999988754 8999999999886542 1121111110 00000 0000111
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
...+...+|+|.++++++.... +| .+.+.+|-
T Consensus 217 l~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 217 LGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence 2246678999999999996543 46 67776663
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-17 Score=152.84 Aligned_cols=214 Identities=17% Similarity=0.168 Sum_probs=146.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccc---cccCCCceeEEecccccc------------ccC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM---HHFGNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~---~~~~~~~v~~~~~D~~~~------------~~~ 179 (442)
++|+++||||+++||+.+++.|+++|++|++.+|+.+...+... ......++.++.+|+.+. .+.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999996433222211 112234688899999775 234
Q ss_pred CCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHH----Hc--C--CeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----RV--G--ARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~--g--~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
++|++|||||... ..++++.+++|+.++.++.+++. +. + .++|++||...+ .
T Consensus 82 ~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~----------------~ 141 (254)
T d2gdza1 82 RLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL----------------M 141 (254)
T ss_dssp CCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT----------------S
T ss_pred CcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc----------------c
Confidence 6999999999643 34678889999999887777663 22 2 269999998754 2
Q ss_pred CCCCCChhHHHHHHHHHHHHH--HHh---hcCCcEEEEeeCceeCCCCcc-CC-------CchHHHHHHHHHcCCCcEEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMD--YHR---GAGVEVRIARIFNTYGPRMCI-DD-------GRVVSNFVAQALRKEPLTVY 318 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~--~~~---~~g~~~~iiRp~~v~G~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~ 318 (442)
+......|+.+|.+.+.+++. ++. ..|+++.+|.||.|-.+.... .. ......+....
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 212 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMI--------- 212 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHH---------
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcC---------
Confidence 333346799999999999875 232 458999999999886532100 00 00111111111
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCCccCHHH
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPGEFTMLE 361 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~~~s~~d 361 (442)
....+...+|+|+++++++.++. +| ++.+.+|..+.|.|
T Consensus 213 ----p~~r~~~pedvA~~v~fL~s~~~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 213 ----KYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp ----HHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred ----CCCCCcCHHHHHHHHHHHHcCCCCCCCEEEECCCCeeeccc
Confidence 11134567999999999998764 45 78888877655543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=2.2e-17 Score=152.48 Aligned_cols=216 Identities=13% Similarity=0.026 Sum_probs=144.3
Q ss_pred CCCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------cc
Q 013467 113 KRKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~ 178 (442)
.+++|+++||||+| +||+.++++|+++|++|++.+|+.....+............++.+|+.++ .+
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF 84 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc
Confidence 45678999999998 89999999999999999988885322221111111223567788888764 23
Q ss_pred CCCCEEEEecccCCCC--------cccCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPV--------HYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.++|++||||+..... ....++...+++|+.++..+++.+... +.++|++||....
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------------- 151 (256)
T d1ulua_ 85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------- 151 (256)
T ss_dssp SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-------------
T ss_pred CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc-------------
Confidence 4699999999864321 111235668899999999998887543 2379999997754
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+...... ....+.....+..++
T Consensus 152 ---~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~--~~~~~~~~~~~~~pl--------- 217 (256)
T d1ulua_ 152 ---KVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP--GFTKMYDRVAQTAPL--------- 217 (256)
T ss_dssp ---SBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------CHHHHHHHHHHSTT---------
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh--hhHHHHHHHHhcCCC---------
Confidence 223334689999999999999988764 899999999998776432111 112233333333222
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+...+|+|.++++++.... +| .+.+.+|.
T Consensus 218 ~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 218 RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (256)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCE
Confidence 135567999999999997543 46 67776663
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.71 E-value=7.8e-17 Score=148.88 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=148.6
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------cc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~~ 178 (442)
++.+|+||||||++.||.+++++|+++|++|++.++......+.....+ ...++.++.+|+.++ .+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999988775443333333222 234678899998764 22
Q ss_pred CCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecC-ccccCCCCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTS-EVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~-~vy~~~~~~~~~E~~~~~~ 250 (442)
.++|++|||||........ +.++..+++|+.++..+++++... +.+++.++|. +.+
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~---------------- 146 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM---------------- 146 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC----------------
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc----------------
Confidence 3699999999976544332 246778999999999998887653 1255555553 332
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCC---------ccCCCchHHHHHHHHHcCCCcEEe
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM---------CIDDGRVVSNFVAQALRKEPLTVY 318 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 318 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||++-.+.. ..........+...+....++
T Consensus 147 ~~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl--- 223 (259)
T d1ja9a_ 147 TGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPL--- 223 (259)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTT---
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCC---
Confidence 122223679999999999999988753 89999999999864310 001111123333344443332
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
..+...+|+|+++++++.+.. +| .+.+.+|
T Consensus 224 ------~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 224 ------KRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp ------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------CCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 245668999999999997654 45 6666655
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.71 E-value=5.6e-17 Score=148.12 Aligned_cols=210 Identities=19% Similarity=0.150 Sum_probs=147.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLEV 181 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~~ 181 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+.....+ ....+ ..++.++++|+.++ .+.++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAE-AVAAL-EAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHTC-CSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHc-CCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 567899999999999999999999999999999986432222 12222 34677889998765 23469
Q ss_pred CEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHcC--C-eEEEeecCccccCCCCCCCCCCCCCCCCCCC
Q 013467 182 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVG--A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIG 254 (442)
Q Consensus 182 d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~g--~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~ 254 (442)
|++||||+........ +.+...+++|+.++..+.+++...- . .++++||.+.. +..
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-----------------~~~ 143 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-----------------GAF 143 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-----------------CHH
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-----------------ccc
Confidence 9999999976543322 2367789999999999999876543 2 44555554321 111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHH
Q 013467 255 VRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331 (442)
Q Consensus 255 ~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 331 (442)
....|+.+|++.|.+++.++++. |+++.+|.||.+-.+... .+.+..........++ ..+...+
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~----~~~~~~~~~~~~~~p~---------~r~~~p~ 210 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA----GLPPWAWEQEVGASPL---------GRAGRPE 210 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT----TSCHHHHHHHHHTSTT---------CSCBCHH
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH----hhhHhHHHHHHhCCCC---------CCCcCHH
Confidence 23579999999999999998875 799999999998665321 1223344444444333 2355789
Q ss_pred HHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 332 DLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 332 Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
|+|+++++++.+.. .| ++.+.+|.
T Consensus 211 dva~~v~fL~S~~s~~itG~~i~vDGG~ 238 (241)
T d2a4ka1 211 EVAQAALFLLSEESAYITGQALYVDGGR 238 (241)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHhcchhCCCcCceEEeCCCc
Confidence 99999999996542 46 67776664
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.71 E-value=4.3e-17 Score=150.73 Aligned_cols=222 Identities=15% Similarity=0.075 Sum_probs=150.0
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc------------c
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------~ 177 (442)
+..++|+++||||+++||+.++++|+++|++|++.+|+.....+...+.. ...++.++.+|+.++ .
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997554333222211 134678899999775 2
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHH----Hc-CC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RV-GA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~----~~-g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
+.++|++|||||........ ++++..+++|+.++..+.+++. +. +. .++.+||...+.......
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~------ 158 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL------ 158 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET------
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc------
Confidence 34699999999975543322 2477789999999888877552 22 34 566666655432110000
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|.+.+.+++.++.+ .|+++.+|.||.|-.+..... ...+........++.
T Consensus 159 ---~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~----~~~~~~~~~~~~pl~-------- 223 (260)
T d1h5qa_ 159 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASNIPLN-------- 223 (260)
T ss_dssp ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCTTS--------
T ss_pred ---ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc----CHHHHHHHHhcCCCC--------
Confidence 11122367999999999999998775 489999999999876543211 133333444433322
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+...+|+|.++++++.+.. +| ++.+.+|.
T Consensus 224 -R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 224 -RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp -SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred -CCcCHHHHHHHHHHHhcchhCCCcCceEEECCCe
Confidence 34557999999999986543 46 67776653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.71 E-value=7.2e-17 Score=150.32 Aligned_cols=219 Identities=13% Similarity=0.045 Sum_probs=146.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-----CCCceeEEecccccc------------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-----GNPNFELIRHDVVEP------------ 176 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~------------ 176 (442)
.++|+++||||++.||+.++++|+++|++|++.+|+....+ .....+ ...++..+.+|+.++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE-ETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998643221 111111 224678899998775
Q ss_pred ccCCCCEEEEecccCCCCc--c----cCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccccCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVH--Y----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~--~----~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
.+.++|++|||||...... . .+.++..+++|+.++..+.+++. +.+. +++++||....
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~----------- 149 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP----------- 149 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS-----------
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhcc-----------
Confidence 2236999999998643321 1 12477889999999888877663 3444 78888876543
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcC--CCcEEec
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRK--EPLTVYG 319 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 319 (442)
.+......|+.+|.+.+.+++.++.+. |+++..|.||.|-.+..... .......-....+.. ..++
T Consensus 150 -----~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iP--- 221 (274)
T d1xhla_ 150 -----QAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIP--- 221 (274)
T ss_dssp -----SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT---
T ss_pred -----ccCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCC---
Confidence 122223679999999999999887754 89999999999976531100 000011111111111 1111
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCCc
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPGE 356 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~~ 356 (442)
...+...+|+|.++++++..+ -+| .+.+.+|..
T Consensus 222 ----lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 222 ----VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp ----TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred ----CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 124567899999999998532 356 777777643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.70 E-value=7.8e-17 Score=149.93 Aligned_cols=221 Identities=13% Similarity=0.051 Sum_probs=144.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc----cCCCceeEEecccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH----FGNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~------------~ 177 (442)
.++|+++||||++.||+.+++.|+++|++|++.+|+.+..++..... ....++..+.+|+.++ .
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998643222111111 1224678899998775 2
Q ss_pred cCCCCEEEEecccCCCCccc-----C---ChhHHHHHhHHHHHHHHHHHH----HcCCeEEEeec-CccccCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK-----F---NPVKTIKTNVVGTLNMLGLAK----RVGARFLLTST-SEVYGDPLQHPQKE 244 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~-----~---~~~~~~~~nv~gt~~ll~~a~----~~g~r~i~iSS-~~vy~~~~~~~~~E 244 (442)
+.++|++|||||...+.... . .+...+++|+.++..+.+++. +.+-.+|+++| .+..
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~---------- 152 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP---------- 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------
T ss_pred hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc----------
Confidence 34699999999976543221 1 267788999999888887663 33345555544 4422
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccC--CCchHHHHHHHHHcC-CCcEEe
Q 013467 245 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCID--DGRVVSNFVAQALRK-EPLTVY 318 (442)
Q Consensus 245 ~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 318 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+..... .......+....... ..+
T Consensus 153 ------~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 223 (272)
T d1xkqa_ 153 ------QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI--- 223 (272)
T ss_dssp ------SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC---
T ss_pred ------cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCC---
Confidence 122234679999999999999988764 89999999999876532100 001111111111111 111
Q ss_pred cCCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCCCcc
Q 013467 319 GDGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNPGEF 357 (442)
Q Consensus 319 ~~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~~~~ 357 (442)
....+...+|+|+++++++..+ -+| ++.+.+|-.+
T Consensus 224 ----PlgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 224 ----PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred ----CCCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 1124667899999999998532 356 7777776443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.3e-16 Score=145.38 Aligned_cols=205 Identities=14% Similarity=0.049 Sum_probs=140.4
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEecccccc------------c
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEP------------L 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~------------~ 177 (442)
.++|++|||||++.||.++++.|+++|++|++.+|+.... +.+...+ ...++.++.+|+.++ .
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNI-EELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999864322 2222111 224678889999775 2
Q ss_pred cCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcC---CeEEEeecCccccCCCCCCCCCCC
Q 013467 178 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG---ARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g---~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
+.++|++|||||........ +.++..+++|+.++..+.+.+ ++.+ .++|++||.+.+..
T Consensus 87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~---------- 156 (257)
T d1xg5a_ 87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------- 156 (257)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC----------
T ss_pred cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC----------
Confidence 34699999999976544332 347778999999988876655 3433 38999999775321
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCC
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 321 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (442)
.|......|+.+|...+.+++.++.+ .|+++.+|.||.+-.+............+....
T Consensus 157 ----~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~------------ 220 (257)
T d1xg5a_ 157 ----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY------------ 220 (257)
T ss_dssp ----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH------------
T ss_pred ----CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC------------
Confidence 12222356999999999999988754 489999999998765421100111111111111
Q ss_pred ceeEeccCHHHHHHHHHHHHcCCCC
Q 013467 322 KQTRSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 322 ~~~~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
....+...+|+|+++++++..+..
T Consensus 221 -~~~r~~~pedvA~~v~fL~s~~a~ 244 (257)
T d1xg5a_ 221 -EQMKCLKPEDVAEAVIYVLSTPAH 244 (257)
T ss_dssp -C---CBCHHHHHHHHHHHHHSCTT
T ss_pred -CCCCCcCHHHHHHHHHHHhCChhc
Confidence 123466789999999999987653
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.69 E-value=5.7e-17 Score=151.14 Aligned_cols=215 Identities=18% Similarity=0.124 Sum_probs=143.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
++++|+++||||++.||+.++++|+++|++|++.+|+.+...+ +.... ..++..+.+|+.+. .+..
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAE-LETDH-GDNVLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHc-CCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999999999986432211 11111 24678888888764 2346
Q ss_pred CCEEEEecccCCCCcc-----cC----ChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHY-----KF----NPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~-----~~----~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
+|++|||||....... .+ .+++.+++|+.++..+.+++ ++.+.++|++||...+
T Consensus 80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~------------- 146 (276)
T d1bdba_ 80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGF------------- 146 (276)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT-------------
T ss_pred cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhc-------------
Confidence 9999999996543211 11 26788999999988887765 4445578888886543
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc--CCcEEEEeeCceeCCCCccCCCch------HHHHHHHHHcCCCcEEec
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCIDDGRV------VSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~--g~~~~iiRp~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 319 (442)
.+......|+.+|.+.+.+++.++.+. ++++..|.||.|-.+......... -..+...+....++
T Consensus 147 ---~~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl---- 219 (276)
T d1bdba_ 147 ---YPNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPI---- 219 (276)
T ss_dssp ---STTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTT----
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCC----
Confidence 122223679999999999999988764 589999999998665321110000 01122222222222
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCC----CCc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGE----HVG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~----~~g-~~~i~~~ 354 (442)
..+...+|+|.++++++..+ -+| .+++.+|
T Consensus 220 -----gR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG 254 (276)
T d1bdba_ 220 -----GRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG 254 (276)
T ss_dssp -----SSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred -----CCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence 23455799999999887532 346 7777665
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.69 E-value=2.9e-16 Score=143.13 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=137.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCe-------EEEEeCCCCCCcccccccc--CCCceeEEecccccc------------
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDS-------VIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP------------ 176 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~-------V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~------------ 176 (442)
.|+||||+++||+.++++|+++|++ |++.+|+.... +.+...+ ...++.++.+|+.+.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l-~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL-EKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH-HHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHH-HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999986 77777753222 2222221 234678889999775
Q ss_pred ccCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCC
Q 013467 177 LLLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 177 ~~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
.+.++|++|||||........ ++++..+++|+.|+..+.+++ ++.+. ++|++||...+.
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------ 149 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK------------ 149 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC------------
Confidence 234699999999976544332 347789999999988877765 45554 999999987542
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++.++.+ .|+++.+|.||.+-.+....- .....
T Consensus 150 ----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~----------------------~~~~~ 203 (240)
T d2bd0a1 150 ----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV----------------------DDEMQ 203 (240)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC----------------------CSTTG
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc----------------------CHhhH
Confidence 2223468999999999999998765 489999999999876532100 00111
Q ss_pred EeccCHHHHHHHHHHHHcCCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
..+...+|+|+++++++.++..
T Consensus 204 ~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 204 ALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp GGSBCHHHHHHHHHHHHTSCTT
T ss_pred hcCCCHHHHHHHHHHHHcCCcc
Confidence 2345679999999999987754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.68 E-value=9.6e-16 Score=142.51 Aligned_cols=222 Identities=17% Similarity=0.132 Sum_probs=150.1
Q ss_pred CcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEecccccc-----------
Q 013467 110 LGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEP----------- 176 (442)
Q Consensus 110 ~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~----------- 176 (442)
.+..+++|+++||||++.||+.++++|+++|++|++.+|+.....+.....+ ...++.++.+|+.++
T Consensus 12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence 3455788999999999999999999999999999999886443323332222 235678888998774
Q ss_pred -ccCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCC
Q 013467 177 -LLLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWG 248 (442)
Q Consensus 177 -~~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~ 248 (442)
.+.++|++||+++........ +.+...+++|+.++..+++++... +.++++++|.....
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~------------- 158 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA------------- 158 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-------------
T ss_pred HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-------------
Confidence 234699999999976554333 246778999999999999888643 23677777654221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCC--------ccCCCchHHHHHH-HHHcCCCcE
Q 013467 249 NVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRM--------CIDDGRVVSNFVA-QALRKEPLT 316 (442)
Q Consensus 249 ~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~--------~~~~~~~~~~~~~-~~~~~~~~~ 316 (442)
.+......|+.+|++.+.+++.++.+ .|+++.+|.||.+-.+.. .......-..... ......++
T Consensus 159 --~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl- 235 (272)
T d1g0oa_ 159 --KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPL- 235 (272)
T ss_dssp --SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTT-
T ss_pred --ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCC-
Confidence 12223367999999999999988775 499999999999865310 0000000011111 11222211
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+...+|+|.++++++.... +| ++.+.+|-
T Consensus 236 --------gR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 236 --------RRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp --------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --------CCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 246678999999999997543 46 66666653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=4.8e-16 Score=146.41 Aligned_cols=203 Identities=13% Similarity=0.044 Sum_probs=135.2
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc----cc-c---ccccCCCceeEEecccccc-------
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK----EN-V---MHHFGNPNFELIRHDVVEP------- 176 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~----~~-~---~~~~~~~~v~~~~~D~~~~------- 176 (442)
++.++|+++||||+++||+.++++|+++|++|++.+|...... .. . ...+.. .......|+.+.
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-RGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-TTCEEEEECCCGGGHHHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh-cccccccccchHHHHHHHH
Confidence 4567889999999999999999999999999999988643221 11 1 111110 111222232221
Q ss_pred -----ccCCCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCC
Q 013467 177 -----LLLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQ 242 (442)
Q Consensus 177 -----~~~~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~ 242 (442)
.+.++|++|||||........ ++++..+++|+.++..+++++ ++.+- ++|++||...+.
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~------- 154 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY------- 154 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC-------
Confidence 334699999999976654333 247789999999998888765 45554 999999977541
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEec
Q 013467 243 KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 319 (442)
Q Consensus 243 ~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (442)
+......|+.+|...+.+++.++.+. |+++.+|.||.+-.+... .+..
T Consensus 155 ---------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~-----~~~~--------------- 205 (302)
T d1gz6a_ 155 ---------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTET-----VMPE--------------- 205 (302)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGG-----GSCH---------------
T ss_pred ---------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhh-----cCcH---------------
Confidence 22223689999999999999988764 899999999976433211 0000
Q ss_pred CCceeEeccCHHHHHHHHHHHHcCCC--Cc-cEEecCC
Q 013467 320 DGKQTRSFQFVSDLVEGLMRLMEGEH--VG-PFNLGNP 354 (442)
Q Consensus 320 ~~~~~~~~v~v~Dva~ai~~~l~~~~--~g-~~~i~~~ 354 (442)
....+...+|+|.++++++.... +| ++.+.+|
T Consensus 206 ---~~~~~~~PedvA~~v~fL~S~~a~itG~~i~vdGG 240 (302)
T d1gz6a_ 206 ---DLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 240 (302)
T ss_dssp ---HHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred ---hhHhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCCC
Confidence 11122345899999999885332 34 4544443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1e-16 Score=146.46 Aligned_cols=195 Identities=12% Similarity=0.009 Sum_probs=139.5
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEecccccc------------ccC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~------------~~~ 179 (442)
...+++++||||++.||++++++|+++|.+|++.+|+.+.-++...+. ....++.++.+|+.+. .+.
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 356779999999999999999999999999999999643222111111 1235688899999775 234
Q ss_pred CCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
++|++|||||........+ .+++++++|+.|+.++.+++ ++.+. ++|++||...+
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~---------------- 147 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH---------------- 147 (244)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C----------------
T ss_pred CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc----------------
Confidence 6999999999765543332 36678999999988887755 45565 89999998754
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhh------cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRG------AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~------~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
.+......|+.+|++.+.+.+.++.+ .|+++.+|.||+|-.+.. . .. . ...
T Consensus 148 ~~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~--~-~~--------------~------~~~ 204 (244)
T d1yb1a_ 148 VSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFI--K-NP--------------S------TSL 204 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCST--T-CT--------------H------HHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhh--h-Cc--------------C------ccc
Confidence 12222367999999999999998765 379999999998755421 0 00 0 001
Q ss_pred EeccCHHHHHHHHHHHHcCCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEHV 346 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~~ 346 (442)
..++..+|+|+.++..+..+..
T Consensus 205 ~~~~~pe~va~~i~~~~~~~~~ 226 (244)
T d1yb1a_ 205 GPTLEPEEVVNRLMHGILTEQK 226 (244)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCS
T ss_pred cCCCCHHHHHHHHHHHHhcCCc
Confidence 1234579999999988877653
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.68 E-value=3.5e-16 Score=143.76 Aligned_cols=213 Identities=16% Similarity=0.110 Sum_probs=140.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-------ccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-------LLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-------~~~~~d~Vih~A~~ 190 (442)
+++||||+++||+.+++.|+++|++|++.+|+.....+..........+++.+.+-.+. .+.++|++|||||.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg~ 81 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIF 81 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 79999999999999999999999999999886443222111111122344433322221 23469999999986
Q ss_pred CCC-Cccc----CChhHHHHHhHHHHHHHHHHH----HHcC-CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhH
Q 013467 191 ASP-VHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 191 ~~~-~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g-~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
... .... ++++..+++|+.++..+++++ ++.+ .++|++||...+. +......|+
T Consensus 82 ~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~----------------~~~~~~~Y~ 145 (252)
T d1zmta1 82 APEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWKELSTYT 145 (252)
T ss_dssp CCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCTTCHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc----------------ccccccccc
Confidence 432 2221 246778899999988877765 4445 4999999987542 222336799
Q ss_pred HHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC----chHHHHHHHHHcCCCcEEecCCceeEeccCHHHH
Q 013467 261 EGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG----RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 333 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 333 (442)
.+|...+.+++.++.+. |+++.+|.||.+-.+....... ..-+.....+.+..++ ..+...+|+
T Consensus 146 asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl---------~R~g~pedv 216 (252)
T d1zmta1 146 SARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTAL---------QRLGTQKEL 216 (252)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSS---------SSCBCHHHH
T ss_pred cccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCC---------CCCcCHHHH
Confidence 99999999999988764 8999999999987654311100 0012223333332222 135568999
Q ss_pred HHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 334 VEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 334 a~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
|.++++++.+.. +| .+.+.+|-
T Consensus 217 A~~v~fL~S~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 217 GELVAFLASGSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp HHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred HHHHHHHhCchhcCCcCCeEEECCCc
Confidence 999999997654 35 77777663
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.64 E-value=2.6e-15 Score=141.15 Aligned_cols=222 Identities=13% Similarity=0.025 Sum_probs=146.3
Q ss_pred cCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc--CCCceeEEeccccccc--------
Q 013467 108 IPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF--GNPNFELIRHDVVEPL-------- 177 (442)
Q Consensus 108 ~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-------- 177 (442)
+-|....++|+++||||+|+||+.++++|+++|++|++.+|+.....+...+.. ....+.++.+|+.+..
T Consensus 17 ~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 17 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhh
Confidence 334457788999999999999999999999999999999996432222221111 2346778889987652
Q ss_pred ----cCCCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHH----HHc-CC-eEEEeecCccccCCCCCCCC
Q 013467 178 ----LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRV-GA-RFLLTSTSEVYGDPLQHPQK 243 (442)
Q Consensus 178 ----~~~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a----~~~-g~-r~i~iSS~~vy~~~~~~~~~ 243 (442)
+.++|++||+||......... ++...+.+|+.+...+...+ ... +. .++.+||.....
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-------- 168 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-------- 168 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH--------
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh--------
Confidence 346999999999765443332 25556778887766665543 222 23 577777765431
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecC
Q 013467 244 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 320 (442)
Q Consensus 244 E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.|-.+....... .............++.
T Consensus 169 --------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~~pl~---- 235 (294)
T d1w6ua_ 169 --------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLD-PTGTFEKEMIGRIPCG---- 235 (294)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CC-TTSHHHHHHHTTCTTS----
T ss_pred --------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccC-CcHHHHHHHhhcCCCC----
Confidence 12223579999999999999988764 8999999999997664211000 0112233333332221
Q ss_pred CceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 321 GKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 321 ~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
.+...+|+|.++.+++.+.. +| ++.+.+|.
T Consensus 236 -----R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 236 -----RLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 269 (294)
T ss_dssp -----SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred -----CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCCh
Confidence 35568999999999996543 46 77777664
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.2e-15 Score=140.84 Aligned_cols=215 Identities=18% Similarity=0.121 Sum_probs=140.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCC--Cccccc---cc--cCCCceeEEeccccccc----------cC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG--RKENVM---HH--FGNPNFELIRHDVVEPL----------LL 179 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~--~~~~~~---~~--~~~~~v~~~~~D~~~~~----------~~ 179 (442)
|.|+||||+++||+.+++.|+++|.+|+.+++.... ..+.+. .. ....++..+.+|+.+.. ..
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g 82 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG 82 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence 368899999999999999999999876655442211 111111 11 13457888999987651 13
Q ss_pred CCCEEEEecccCCCCccc----CChhHHHHHhHHHHHHHHHHH----HHcCC-eEEEeecCccccCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNV 250 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a----~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~ 250 (442)
.+|++|||||........ +.+...+++|+.|+.++.+++ ++.+. ++|++||....
T Consensus 83 ~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~---------------- 146 (285)
T d1jtva_ 83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL---------------- 146 (285)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT----------------
T ss_pred chhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc----------------
Confidence 599999999976554332 246778999999988887765 45565 99999998654
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCC-----------chHHHHHHHHHcCCCcE
Q 013467 251 NPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDG-----------RVVSNFVAQALRKEPLT 316 (442)
Q Consensus 251 ~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 316 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||+|-.+....... .....+.........+
T Consensus 147 ~~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 225 (285)
T d1jtva_ 147 MGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQV- 225 (285)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHH-
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhh-
Confidence 233334679999999999999987764 9999999999987543210000 0011111111110000
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCCCCccEEecCC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 354 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~~~g~~~i~~~ 354 (442)
....+...+|+|++++++++.+.....++++.
T Consensus 226 ------~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g~ 257 (285)
T d1jtva_ 226 ------FREAAQNPEEVAEVFLTALRAPKPTLRYFTTE 257 (285)
T ss_dssp ------HHHHCBCHHHHHHHHHHHHHCSSCCSEEESCS
T ss_pred ------hcccCCCHHHHHHHHHHHHhCCCCCeEEecHH
Confidence 01124457999999999999887766666653
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.8e-15 Score=136.44 Aligned_cols=202 Identities=19% Similarity=0.210 Sum_probs=136.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------------ccCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------------LLLE 180 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~~~~ 180 (442)
..++|+++||||+++||..++++|+++|++|++++|+.....+... .+. ........|..+. ....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK-KLG-NNCVFAPADVTSEKDVQTALALAKGKFGR 79 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH-HHC-TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-HhC-CCccccccccccccccccccccccccccc
Confidence 3578899999999999999999999999999999997544333222 221 3445555555432 2335
Q ss_pred CCEEEEecccCCCCcc----------cCChhHHHHHhHHHHHHHHHHHHHc----------CC-eEEEeecCccccCCCC
Q 013467 181 VDQIYHLACPASPVHY----------KFNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQ 239 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~----------~~~~~~~~~~nv~gt~~ll~~a~~~----------g~-r~i~iSS~~vy~~~~~ 239 (442)
.|.++++++....... .+.+...+++|+.++.++.+++... +. ++|++||...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---- 155 (248)
T d2o23a1 80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---- 155 (248)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH----
T ss_pred ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc----
Confidence 8888888765433211 1246678999999999999887432 23 799999987652
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcE
Q 013467 240 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 316 (442)
Q Consensus 240 ~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+... .+...+........++
T Consensus 156 ------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl- 218 (248)
T d2o23a1 156 ------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT----SLPEKVCNFLASQVPF- 218 (248)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTCSS-
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh----cCCHHHHHHHHhcCCC-
Confidence 22234689999999999999998764 899999999998766431 1112222222222211
Q ss_pred EecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 317 VYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 317 ~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
...+...+|+|++++++++.+
T Consensus 219 -------~~R~g~peevA~~v~fL~s~~ 239 (248)
T d2o23a1 219 -------PSRLGDPAEYAHLVQAIIENP 239 (248)
T ss_dssp -------SCSCBCHHHHHHHHHHHHHCT
T ss_pred -------CCCCcCHHHHHHHHHHHHhCC
Confidence 013567899999999998754
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.62 E-value=6.6e-15 Score=135.72 Aligned_cols=197 Identities=17% Similarity=0.199 Sum_probs=135.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCc--ccccccc--CCCceeEEeccccccc--------c---CC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRK--ENVMHHF--GNPNFELIRHDVVEPL--------L---LE 180 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~--------~---~~ 180 (442)
.+|+||||+|+||..++++|+++|+ .|+++.|+..... +.....+ ...++.++.+|+.+.. + ..
T Consensus 10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~~ 89 (259)
T d2fr1a1 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVP 89 (259)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccccc
Confidence 4899999999999999999999998 5777777532211 1111111 2356888999987641 1 24
Q ss_pred CCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCccccCCCCCCCCCCCCCCCCCCCC
Q 013467 181 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV 255 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~ 255 (442)
+|.|||++|........+ .+...+++|+.++.++.+++...+. +||++||....- +...
T Consensus 90 i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~----------------g~~~ 153 (259)
T d2fr1a1 90 LSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF----------------GAPG 153 (259)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------CCTT
T ss_pred ccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc----------------CCcc
Confidence 899999999765543332 2556788999999999998887765 899999977541 2222
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 256 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 256 ~~~Y~~sK~~~E~~v~~~~~~~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
...|+.+|...+.+.+++. ..|+++++|.||.+.++++.. ......+... | ...+..+++++
T Consensus 154 ~~~YaAaka~l~~la~~~~-~~Gi~v~~I~pg~~~~~g~~~-------~~~~~~~~~~-------G---~~~~~~~~~~~ 215 (259)
T d2fr1a1 154 LGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAE-------GPVADRFRRH-------G---VIEMPPETACR 215 (259)
T ss_dssp CTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC-------------------CTTT-------T---EECBCHHHHHH
T ss_pred cHHHHHHHHhHHHHHHHHH-hCCCCEEECCCCcccCCcccc-------chHHHHHHhc-------C---CCCCCHHHHHH
Confidence 3679999999999988874 458999999999988765421 1111111111 1 24567899999
Q ss_pred HHHHHHcCCCCc
Q 013467 336 GLMRLMEGEHVG 347 (442)
Q Consensus 336 ai~~~l~~~~~g 347 (442)
++..++..+...
T Consensus 216 ~l~~~l~~~~~~ 227 (259)
T d2fr1a1 216 ALQNALDRAEVC 227 (259)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHHhCCCce
Confidence 999999887655
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.61 E-value=5.4e-15 Score=135.44 Aligned_cols=163 Identities=16% Similarity=0.065 Sum_probs=117.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh---CCCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc--------------
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIA---RGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL-------------- 177 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~---~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~-------------- 177 (442)
||+||||||+++||..++++|++ +|++|++.+|+.+...+ +... ....++.++.+|+.+..
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 67999999999999999999974 68999999997554332 2211 13457889999987641
Q ss_pred cCCCCEEEEecccCCCCc-c-cC---ChhHHHHHhHHHHHHHHHHH----HHc-----------C-CeEEEeecCccccC
Q 013467 178 LLEVDQIYHLACPASPVH-Y-KF---NPVKTIKTNVVGTLNMLGLA----KRV-----------G-ARFLLTSTSEVYGD 236 (442)
Q Consensus 178 ~~~~d~Vih~A~~~~~~~-~-~~---~~~~~~~~nv~gt~~ll~~a----~~~-----------g-~r~i~iSS~~vy~~ 236 (442)
..++|++|||||...... . +. .++..+++|+.|+..+.+++ ++. + .++|++||....-.
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 135999999999754432 2 22 26678999999988887765 221 2 37999998653210
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCC
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGP 292 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~ 292 (442)
. .+......|+.||++...+++.++.+ .|+++..|.||+|-.+
T Consensus 161 --~-----------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 161 --G-----------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp --T-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred --C-----------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 0 12223357999999999999887654 4899999999998765
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.9e-14 Score=130.77 Aligned_cols=192 Identities=18% Similarity=0.108 Sum_probs=128.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc----cc--cCCCCEEEEec
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE----PL--LLEVDQIYHLA 188 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~----~~--~~~~d~Vih~A 188 (442)
++|+|+||||+|.||+.++++|+++|++|+++++.......... .......+..+.|... .. ..++|++||||
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnA 79 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASV-IVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA 79 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEE-ECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccccc-eeecccCcHHHHHHHHHHHHHHhCCCCceEEEECC
Confidence 36799999999999999999999999999999885432211110 0000000000011000 11 12489999999
Q ss_pred ccCCCCcc-----cCChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhH
Q 013467 189 CPASPVHY-----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYD 260 (442)
Q Consensus 189 ~~~~~~~~-----~~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~ 260 (442)
|....... .+.++..+++|+.++.++.+++... +.++|++||...+ .+......|+
T Consensus 80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~----------------~~~~~~~~Y~ 143 (236)
T d1dhra_ 80 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL----------------DGTPGMIGYG 143 (236)
T ss_dssp CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG----------------SCCTTBHHHH
T ss_pred cccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc----------------CCccCCcccH
Confidence 85332211 1235668899999999998887643 2389999998754 2233346899
Q ss_pred HHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 261 EGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 261 ~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
.+|.+.+.+++.++.+ .|+++..|.||.+..+. ........ ..-.|+..+++|+
T Consensus 144 asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~------------~~~~~~~~---------~~~~~~~pe~va~ 202 (236)
T d1dhra_ 144 MAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFSSWTPLEFLVE 202 (236)
T ss_dssp HHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGGGSEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc------------chhhCccc---------hhhcCCCHHHHHH
Confidence 9999999999999865 37999999999987642 11111111 1225677899999
Q ss_pred HHHHHHcCC
Q 013467 336 GLMRLMEGE 344 (442)
Q Consensus 336 ai~~~l~~~ 344 (442)
.+..++...
T Consensus 203 ~~~~l~s~~ 211 (236)
T d1dhra_ 203 TFHDWITGN 211 (236)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHhCCC
Confidence 999998754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=8.5e-15 Score=134.84 Aligned_cols=214 Identities=15% Similarity=0.039 Sum_probs=141.2
Q ss_pred CCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc-CCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~------------~~ 178 (442)
+++|+||||||+| +||+.+++.|+++|++|++.+|+... .+...+.. ..........|..+. ..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL-KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 81 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT-HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence 4678999999999 89999999999999999999986432 22221111 223445555555442 23
Q ss_pred CCCCEEEEecccCCCCcccC---------ChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYKF---------NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~---------~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
...|++||+++......... .+......|+.+...+++.+... +..+|++||....
T Consensus 82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~------------ 149 (258)
T d1qsga_ 82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------ 149 (258)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------
T ss_pred cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc------------
Confidence 35899999998754433211 13345567777777777776543 2368888887643
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|+||.|..+..... ..............++
T Consensus 150 ----~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~--~~~~~~~~~~~~~~pl-------- 215 (258)
T d1qsga_ 150 ----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI--KDFRKMLAHCEAVTPI-------- 215 (258)
T ss_dssp ----SBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS--TTHHHHHHHHHHHSTT--------
T ss_pred ----cCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc--chhhhHHHHHHhCCCC--------
Confidence 222334789999999999999988765 79999999999987653211 1112233333332222
Q ss_pred eEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+...+|+|.++.+++.+.. +| ++.+.+|-
T Consensus 216 -~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~ 250 (258)
T d1qsga_ 216 -RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 250 (258)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHhCchhcCccCceEEECcCH
Confidence 135668999999999996542 45 67776663
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.59 E-value=3.5e-14 Score=130.08 Aligned_cols=205 Identities=11% Similarity=-0.014 Sum_probs=132.1
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccccccc------------c--
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------------L-- 178 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~-- 178 (442)
++|+||||||+++||..++++|+++|+ .|++.+|+.+.. +.+.. ....++.++.+|+.+.. +
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~-~~l~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA-TELKS-IKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC-HHHHT-CCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH-HHHHH-hhCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 457999999999999999999999996 677778764322 22222 23457899999997651 1
Q ss_pred CCCCEEEEecccCCCCc--cc---CChhHHHHHhHHHHHHHHHHHH----Hc------------CCeEEEeecCccccCC
Q 013467 179 LEVDQIYHLACPASPVH--YK---FNPVKTIKTNVVGTLNMLGLAK----RV------------GARFLLTSTSEVYGDP 237 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~--~~---~~~~~~~~~nv~gt~~ll~~a~----~~------------g~r~i~iSS~~vy~~~ 237 (442)
.++|++|||||...... .+ +.++..+++|+.|+..+.+.+. +. ..+++.+|+...+-..
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~ 159 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence 14899999999754321 11 2366789999999988877652 21 0257777765443111
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCC
Q 013467 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 314 (442)
Q Consensus 238 ~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 314 (442)
... ..+..+...|+.||++...+++.++.+ .|+++.+|.||+|-.+-. +.
T Consensus 160 ~~~---------~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~-----------------~~- 212 (250)
T d1yo6a1 160 NTS---------GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG-----------------GK- 212 (250)
T ss_dssp CCS---------TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred Ccc---------cccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCC-----------------CC-
Confidence 000 012223356999999999999998765 489999999998754310 00
Q ss_pred cEEecCCceeEeccCHHHHHHHHHHHHcCCC---CccEEecCCCccC
Q 013467 315 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VGPFNLGNPGEFT 358 (442)
Q Consensus 315 ~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g~~~i~~~~~~s 358 (442)
...+..++.++.++..+.+.. .|.|..-+++++.
T Consensus 213 ----------~~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~p~~ 249 (250)
T d1yo6a1 213 ----------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp ----------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred ----------CCCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCeeCC
Confidence 012346888888888887643 4655554555543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.58 E-value=1.4e-14 Score=131.50 Aligned_cols=187 Identities=18% Similarity=0.174 Sum_probs=124.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecc-----cccc--ccCCCCEEEEeccc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHD-----VVEP--LLLEVDQIYHLACP 190 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D-----~~~~--~~~~~d~Vih~A~~ 190 (442)
||+||||+|.||..++++|+++|++|++++|.......... .....++..+.+ .... ...++|+||||||.
T Consensus 4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~ 81 (235)
T d1ooea_ 4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNI--LVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG 81 (235)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEE--ECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcccccc--eeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCcc
Confidence 79999999999999999999999999999996433221111 001111110000 0001 12458999999996
Q ss_pred CCCCc-cc----CChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHH
Q 013467 191 ASPVH-YK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEG 262 (442)
Q Consensus 191 ~~~~~-~~----~~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~s 262 (442)
..... .. +.++..+++|+.++..+++++... +.++|++||...+ .+......|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~----------------~~~~~~~~Y~as 145 (235)
T d1ooea_ 82 WAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM----------------GPTPSMIGYGMA 145 (235)
T ss_dssp CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG----------------SCCTTBHHHHHH
T ss_pred cccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc----------------CCcccccchHHH
Confidence 33211 11 235567899999999988887653 2389999997754 233334789999
Q ss_pred HHHHHHHHHHHHhhc-----CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHH
Q 013467 263 KRTAETLTMDYHRGA-----GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 337 (442)
Q Consensus 263 K~~~E~~v~~~~~~~-----g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai 337 (442)
|.+.+.+++.++.+. ++++..|.||.+-.+ +....... .....++..+|+++.+
T Consensus 146 Kaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~------------~~~~~~~~---------~~~~~~~~~~~va~~~ 204 (235)
T d1ooea_ 146 KAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP------------MNRKWMPN---------ADHSSWTPLSFISEHL 204 (235)
T ss_dssp HHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH------------HHHHHSTT---------CCGGGCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc------------chhhhCcC---------CccccCCCHHHHHHHH
Confidence 999999999987653 678888999887542 12222222 1223577899999998
Q ss_pred HHHHcC
Q 013467 338 MRLMEG 343 (442)
Q Consensus 338 ~~~l~~ 343 (442)
+..+..
T Consensus 205 ~~~l~~ 210 (235)
T d1ooea_ 205 LKWTTE 210 (235)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 876654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.1e-14 Score=135.10 Aligned_cols=198 Identities=12% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc--cCCCceeEEecccccc------------ccC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH--FGNPNFELIRHDVVEP------------LLL 179 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~------------~~~ 179 (442)
+++|+++||||+++||.+++++|+++|++|++++|+.+..++...+. .....+..+..|..+. ...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999999999643222211111 1334566677776543 233
Q ss_pred CCCEEEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHH----HHcCCeEEEeecCccccCCCCCCCCCCCCCCCC
Q 013467 180 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVN 251 (442)
Q Consensus 180 ~~d~Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a----~~~g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~ 251 (442)
..|+++||||........+ .+...+++|+.++..+.+.+ ++.+.++|++||...+ .
T Consensus 92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~----------------~ 155 (269)
T d1xu9a_ 92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK----------------V 155 (269)
T ss_dssp SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT----------------S
T ss_pred CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc----------------C
Confidence 6899999998765443322 35567899999987776655 3444589999987754 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhh-----cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEe
Q 013467 252 PIGVRSCYDEGKRTAETLTMDYHRG-----AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 326 (442)
Q Consensus 252 ~~~~~~~Y~~sK~~~E~~v~~~~~~-----~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (442)
+......|+.||++.+.+++.++.+ .|+++..|.||.|-.+ +......+ .....
T Consensus 156 ~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~------------~~~~~~~~---------~~~~~ 214 (269)
T d1xu9a_ 156 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE------------TAMKAVSG---------IVHMQ 214 (269)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH------------HHHHHSCG---------GGGGG
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc------------HHHHhccC---------Ccccc
Confidence 3333478999999999999988765 3688999999987542 11122111 11223
Q ss_pred ccCHHHHHHHHHHHHcCCCCcc
Q 013467 327 FQFVSDLVEGLMRLMEGEHVGP 348 (442)
Q Consensus 327 ~v~v~Dva~ai~~~l~~~~~g~ 348 (442)
....+++|+.++..+......+
T Consensus 215 ~~~~e~~a~~i~~~~~~~~~~i 236 (269)
T d1xu9a_ 215 AAPKEECALEIIKGGALRQEEV 236 (269)
T ss_dssp CBCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCHHHHHHHHHHHhhcCCCEE
Confidence 4567899999888776655443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=1.3e-15 Score=140.66 Aligned_cols=205 Identities=12% Similarity=0.020 Sum_probs=137.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHh---CCCeEEEEeCCCCCCcccccc----ccCCCceeEEeccccccc---------
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIA---RGDSVIVVDNFFTGRKENVMH----HFGNPNFELIRHDVVEPL--------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~---~g~~V~~l~r~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~--------- 177 (442)
+++|+++||||+++||..++++|++ +|++|++.+|+..... .+.. .....++.++.+|+.++.
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~-~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~ 82 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR-QLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH-HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHH-HHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 4567899999999999999999986 6999999998643222 2211 112347888999987741
Q ss_pred -------cCCCCEEEEecccCCCCc---c-c---CChhHHHHHhHHHHHHHHHHHHH----cC---CeEEEeecCccccC
Q 013467 178 -------LLEVDQIYHLACPASPVH---Y-K---FNPVKTIKTNVVGTLNMLGLAKR----VG---ARFLLTSTSEVYGD 236 (442)
Q Consensus 178 -------~~~~d~Vih~A~~~~~~~---~-~---~~~~~~~~~nv~gt~~ll~~a~~----~g---~r~i~iSS~~vy~~ 236 (442)
....|++|||||...+.. . . +.++..+++|+.++..+.+++.. .+ .++|++||...+
T Consensus 83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~-- 160 (259)
T d1oaaa_ 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL-- 160 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT--
T ss_pred HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc--
Confidence 114689999998654321 1 1 23677899999999999988753 22 279999997754
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc-CCcEEEEeeCceeCCCCccC-CCchHHHHHHHHHcCCC
Q 013467 237 PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYGPRMCID-DGRVVSNFVAQALRKEP 314 (442)
Q Consensus 237 ~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~-g~~~~iiRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~ 314 (442)
.+......|+.+|.+.+.+++.++.+. |+++.+|.||.|..+..... ....-......+....
T Consensus 161 --------------~~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~- 225 (259)
T d1oaaa_ 161 --------------QPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLK- 225 (259)
T ss_dssp --------------SCCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHH-
T ss_pred --------------CCCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcC-
Confidence 233344789999999999999987654 89999999998876421000 0000001111111000
Q ss_pred cEEecCCceeEeccCHHHHHHHHHHHHcCC
Q 013467 315 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGE 344 (442)
Q Consensus 315 ~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~ 344 (442)
....+...+|+|++++.++.+.
T Consensus 226 --------~~~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 226 --------SDGALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp --------HTTCSBCHHHHHHHHHHHHHHC
T ss_pred --------CCCCCCCHHHHHHHHHHHhhhc
Confidence 0112456799999999988654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=4.1e-14 Score=128.67 Aligned_cols=200 Identities=19% Similarity=0.144 Sum_probs=132.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc-----------ccCCCCEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP-----------LLLEVDQIY 185 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----------~~~~~d~Vi 185 (442)
|+++||||+++||+.++++|+++|++|++.+|+.+.. +....++|+... .....+.++
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 70 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE-----------DLIYVEGDVTREEDVRRAVARAQEEAPLFAVV 70 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS-----------SSEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc-----------cceEeeccccchhhhHHHHHhhhccccccchh
Confidence 6899999999999999999999999999999864321 223444554332 112345555
Q ss_pred EecccCCCCcc--------cCChhHHHHHhHHHHHHHHHHHHHc----------CC-eEEEeecCccccCCCCCCCCCCC
Q 013467 186 HLACPASPVHY--------KFNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQHPQKETY 246 (442)
Q Consensus 186 h~A~~~~~~~~--------~~~~~~~~~~nv~gt~~ll~~a~~~----------g~-r~i~iSS~~vy~~~~~~~~~E~~ 246 (442)
++++....... .+.++..+++|+.+...+++.+... +. ++|++||...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~----------- 139 (241)
T d1uaya_ 71 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE----------- 139 (241)
T ss_dssp ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH-----------
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc-----------
Confidence 55543322111 1235567899999988887765322 33 899999987542
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCce
Q 013467 247 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 323 (442)
Q Consensus 247 ~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (442)
+......|+.+|.+.+.+++.++.+. |+++.+|.||.+..+..... ............++.
T Consensus 140 -----~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~----~~~~~~~~~~~~~~~------- 203 (241)
T d1uaya_ 140 -----GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL----PEKAKASLAAQVPFP------- 203 (241)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS----CHHHHHHHHTTCCSS-------
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh----hhhHHHHHHhcCCCC-------
Confidence 22234789999999999999988754 89999999999876532111 122222333332210
Q ss_pred eEeccCHHHHHHHHHHHHcCCC-Cc-cEEecCCC
Q 013467 324 TRSFQFVSDLVEGLMRLMEGEH-VG-PFNLGNPG 355 (442)
Q Consensus 324 ~~~~v~v~Dva~ai~~~l~~~~-~g-~~~i~~~~ 355 (442)
..+...+|+|.++++++.... +| ++.+.+|-
T Consensus 204 -~R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG~ 236 (241)
T d1uaya_ 204 -PRLGRPEEYAALVLHILENPMLNGEVVRLDGAL 236 (241)
T ss_dssp -CSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTC
T ss_pred -CCCcCHHHHHHHHHHHHhCCCCCCCEEEECCcc
Confidence 135568999999999987542 45 67776653
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.52 E-value=2.8e-13 Score=126.17 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=135.5
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEec-----------------ccccc-
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRH-----------------DVVEP- 176 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~-----------------D~~~~- 176 (442)
.++||||++.||+.++++|+++|++|++.+++.....+.+...+ .......++. |+.+.
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~~ 83 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFT 83 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCHH
Confidence 68999999999999999999999999998875433222222111 1122233333 33322
Q ss_pred -----------ccCCCCEEEEecccCCCCcccC----C--------------hhHHHHHhHHHHHHHHHHHHH-------
Q 013467 177 -----------LLLEVDQIYHLACPASPVHYKF----N--------------PVKTIKTNVVGTLNMLGLAKR------- 220 (442)
Q Consensus 177 -----------~~~~~d~Vih~A~~~~~~~~~~----~--------------~~~~~~~nv~gt~~ll~~a~~------- 220 (442)
.+.++|++|||||...+....+ . ...++.+|+.++..+.+++.+
T Consensus 84 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 163 (284)
T d1e7wa_ 84 RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPA 163 (284)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhHH
Confidence 2346999999999765432211 1 123678888888888876532
Q ss_pred --cC-C-eEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCC
Q 013467 221 --VG-A-RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPR 293 (442)
Q Consensus 221 --~g-~-r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~ 293 (442)
.+ . .+|+++|.... .+......|+.+|...+.+++.++.+. |+++.+|.||.+-...
T Consensus 164 ~~~~~~~~ii~~~s~~~~----------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~ 227 (284)
T d1e7wa_ 164 KHRGTNYSIINMVDAMTN----------------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD 227 (284)
T ss_dssp GGSCSCEEEEEECCTTTT----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG
T ss_pred HhcCCCCccccccccccc----------------CCccceeeeccccccchhhhHHHHHHhCCccccccccccccccccc
Confidence 12 2 67777776543 233334689999999999999988754 8999999999643221
Q ss_pred CccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCcc
Q 013467 294 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGEF 357 (442)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~~ 357 (442)
.....+........++ ...+...+|+|.++++++.... +| .+.+.+|..+
T Consensus 228 ------~~~~~~~~~~~~~~pl--------~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~sl 281 (284)
T d1e7wa_ 228 ------DMPPAVWEGHRSKVPL--------YQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSL 281 (284)
T ss_dssp ------GSCHHHHHHHHTTCTT--------TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ------cCCHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChhc
Confidence 1123444444443322 0135568999999999996543 46 6777776544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.6e-14 Score=132.82 Aligned_cols=175 Identities=17% Similarity=0.020 Sum_probs=118.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccc-cCCCceeEEeccccccc------------cCCCCE
Q 013467 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEPL------------LLEVDQ 183 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~~d~ 183 (442)
.++||||+++||..++++|+++ |+.|++.+|+.+..++..... ....++.++.+|+.+.. +.++|+
T Consensus 5 VAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iDi 84 (275)
T d1wmaa1 5 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDV 84 (275)
T ss_dssp EEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCcEE
Confidence 4589999999999999999986 899999999654322221111 12357888999997752 236999
Q ss_pred EEEecccCCCCcccC----ChhHHHHHhHHHHHHHHHHHHHc---CCeEEEeecCccc-cCCCCCC----------CCCC
Q 013467 184 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVY-GDPLQHP----------QKET 245 (442)
Q Consensus 184 Vih~A~~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~---g~r~i~iSS~~vy-~~~~~~~----------~~E~ 245 (442)
+|||||........+ +++..+++|+.|+..+++.+... +.++|++||.... +.....+ ..+.
T Consensus 85 LVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~~~~~ 164 (275)
T d1wmaa1 85 LVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEE 164 (275)
T ss_dssp EEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSCCHH
T ss_pred EEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccccchh
Confidence 999999865543332 35568899999999999988542 2389999996532 1100000 0000
Q ss_pred --------------CCCCCCCCCCCChhHHHHHHHHHHHHHHHhh-------cCCcEEEEeeCceeCC
Q 013467 246 --------------YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-------AGVEVRIARIFNTYGP 292 (442)
Q Consensus 246 --------------~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~-------~g~~~~iiRp~~v~G~ 292 (442)
......+..+...|+.||+....+++.++++ .|+++..+.||+|-.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 165 ELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred hhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 0000122234467999999998887766544 3899999999998654
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.50 E-value=7.5e-13 Score=121.95 Aligned_cols=209 Identities=17% Similarity=0.133 Sum_probs=132.7
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc---CCCceeEEecccccc----------------cc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF---GNPNFELIRHDVVEP----------------LL 178 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~----------------~~ 178 (442)
+++||||++.||..++++|+++|++|++.+|+.+...+.+...+ ......+...|..+. .+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF 82 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999987544333322211 223444444433221 23
Q ss_pred CCCCEEEEecccCCCCcccC---------------ChhHHHHHhHHHHHHHHHHHHHc---------CC-eEEEeecCcc
Q 013467 179 LEVDQIYHLACPASPVHYKF---------------NPVKTIKTNVVGTLNMLGLAKRV---------GA-RFLLTSTSEV 233 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~---------------~~~~~~~~nv~gt~~ll~~a~~~---------g~-r~i~iSS~~v 233 (442)
.++|++|||||...+..+.. .+...+..|+.+........... .. .++.+|+...
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (266)
T d1mxha_ 83 GRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 162 (266)
T ss_dssp SCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGG
T ss_pred CCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhccc
Confidence 46999999999765432211 12234445555544444443321 12 4666666554
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh---cCCcEEEEeeCceeCCCCccCCCchHHHHHHHHH
Q 013467 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL 310 (442)
Q Consensus 234 y~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~---~g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~ 310 (442)
. .+......|+.+|...+.+++.++.+ .|+++..|.||.+..+... -..+...+.
T Consensus 163 ~----------------~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~------~~~~~~~~~ 220 (266)
T d1mxha_ 163 D----------------LPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAM------PQETQEEYR 220 (266)
T ss_dssp G----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSS------CHHHHHHHH
T ss_pred c----------------ccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccC------CHHHHHHHH
Confidence 3 22333478999999999999998775 4899999999998765421 133444444
Q ss_pred cCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 311 RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 311 ~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
...++. +-+...+|+|.++++++.+.. .| .+.+.+|-.
T Consensus 221 ~~~pl~--------r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 221 RKVPLG--------QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 262 (266)
T ss_dssp TTCTTT--------SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hcCCCC--------CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHh
Confidence 433221 123468999999999997653 56 777776643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.49 E-value=4e-13 Score=124.57 Aligned_cols=214 Identities=12% Similarity=-0.045 Sum_probs=132.3
Q ss_pred CCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCccccccc-cCCCceeEEecccccc------------cc
Q 013467 114 RKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHH-FGNPNFELIRHDVVEP------------LL 178 (442)
Q Consensus 114 ~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~------------~~ 178 (442)
+++|++|||||+| +||..+++.|+++|++|++.+|+.. ..+...+. .......+...|+.+. .+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 81 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence 5678999999887 8999999999999999999999632 21222111 1224556677776554 23
Q ss_pred CCCCEEEEecccCCCCcccC----C-hhHHHHHhH---HHHHHHHHHHHHcC-C--eEEEeecCccccCCCCCCCCCCCC
Q 013467 179 LEVDQIYHLACPASPVHYKF----N-PVKTIKTNV---VGTLNMLGLAKRVG-A--RFLLTSTSEVYGDPLQHPQKETYW 247 (442)
Q Consensus 179 ~~~d~Vih~A~~~~~~~~~~----~-~~~~~~~nv---~gt~~ll~~a~~~g-~--r~i~iSS~~vy~~~~~~~~~E~~~ 247 (442)
..+|++|||++......... . .......+. .....+........ . .++.+|+.+...
T Consensus 82 g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~------------ 149 (274)
T d2pd4a1 82 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------------ 149 (274)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred CCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc------------
Confidence 46999999999654322111 1 222222222 23333333333322 2 455566555432
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCcee
Q 013467 248 GNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 324 (442)
Q Consensus 248 ~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (442)
+......|+.+|.+.+.+++..+.+. |+++.+|.||.+..+....... ............++
T Consensus 150 ----~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------- 214 (274)
T d2pd4a1 150 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD--FRMILKWNEINAPL--------- 214 (274)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT--HHHHHHHHHHHSTT---------
T ss_pred ----ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCc--hHHHHHHHhhhhhc---------
Confidence 22233679999999999998887654 8999999999988764321111 12222222222111
Q ss_pred EeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCC
Q 013467 325 RSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPG 355 (442)
Q Consensus 325 ~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~ 355 (442)
..+...+|+|.++++++.+.. +| ++.+.+|.
T Consensus 215 ~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 215 RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence 245678999999999997543 45 77777764
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.47 E-value=1.6e-12 Score=121.75 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=136.1
Q ss_pred CCCCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCC------------CccccccccCC---CceeEEecccc
Q 013467 112 LKRKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTG------------RKENVMHHFGN---PNFELIRHDVV 174 (442)
Q Consensus 112 ~~~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~------------~~~~~~~~~~~---~~v~~~~~D~~ 174 (442)
+.+++|++|||||+| +||..++++|+++|.+|++.+|.... ........... .++..++.++.
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence 456788999999987 89999999999999999999874210 00000000000 01111111110
Q ss_pred ------------------------------ccccCCCCEEEEecccCCC--Cc----ccCChhHHHHHhHHHHHHHHHHH
Q 013467 175 ------------------------------EPLLLEVDQIYHLACPASP--VH----YKFNPVKTIKTNVVGTLNMLGLA 218 (442)
Q Consensus 175 ------------------------------~~~~~~~d~Vih~A~~~~~--~~----~~~~~~~~~~~nv~gt~~ll~~a 218 (442)
...+.++|++|||||.... .. ..+++...+++|+.++..+++++
T Consensus 84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~ 163 (297)
T d1d7oa_ 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence 0123468999999986431 11 12236778999999999999988
Q ss_pred HHcC---CeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHh----hcCCcEEEEeeCceeC
Q 013467 219 KRVG---ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR----GAGVEVRIARIFNTYG 291 (442)
Q Consensus 219 ~~~g---~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~----~~g~~~~iiRp~~v~G 291 (442)
...- ...+.+++.+.... .......|..+|...+.+++.++. +.|+++..|.||++..
T Consensus 164 ~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T 228 (297)
T d1d7oa_ 164 LPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHHhhcCCcceeeeehhhccc---------------ccccccceecccccccccccccchhccccceEEecccccccccc
Confidence 6543 24555555443211 112235799999999888776544 3589999999999987
Q ss_pred CCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCC
Q 013467 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~ 354 (442)
+... .....+.+........++. .+...+|+|.++++++.... +| ++.+.+|
T Consensus 229 ~~~~--~~~~~~~~~~~~~~~~Plg---------R~~~peevA~~v~fL~S~~a~~itGq~i~vDGG 284 (297)
T d1d7oa_ 229 RAAK--AIGFIDTMIEYSYNNAPIQ---------KTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp CCSS--CCSHHHHHHHHHHHHSSSC---------CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhhh--hccCCHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 7542 2223344444444433321 35568999999999996542 45 6666655
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.43 E-value=7.6e-13 Score=122.15 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=135.1
Q ss_pred CCCCEEEEEcCCc--hhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc--------------
Q 013467 114 RKGLRIVVTGGAG--FVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL-------------- 177 (442)
Q Consensus 114 ~~~~~vlVtGatG--~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------- 177 (442)
+++|+++||||+| +||..++++|+++|++|++.+|+.....+.+.+.. ..+...+++|+.++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~~~ 82 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG 82 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhccc
Confidence 5678999999654 69999999999999999999986443323333332 345667888886541
Q ss_pred -cCCCCEEEEecccCCCCcc------cC---ChhHHHHHhHHHHHHHHHHHHHcC--CeEEEeecCccccCCCCCCCCCC
Q 013467 178 -LLEVDQIYHLACPASPVHY------KF---NPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQKET 245 (442)
Q Consensus 178 -~~~~d~Vih~A~~~~~~~~------~~---~~~~~~~~nv~gt~~ll~~a~~~g--~r~i~iSS~~vy~~~~~~~~~E~ 245 (442)
+..+|++||++|....... +. .+...+..|+.........+.... ...|.++|....
T Consensus 83 ~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~----------- 151 (268)
T d2h7ma1 83 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS----------- 151 (268)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-----------
T ss_pred cCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccccc-----------
Confidence 2348999999986432111 11 233345566666666666555433 234444444332
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCC--------ccCCCchHHHHHHHHHcCCC
Q 013467 246 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRM--------CIDDGRVVSNFVAQALRKEP 314 (442)
Q Consensus 246 ~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~--------~~~~~~~~~~~~~~~~~~~~ 314 (442)
........|+.+|.+.+.+++.++.+. |+++..|.||.+-.+.. ..........+.....+..+
T Consensus 152 -----~~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 226 (268)
T d2h7ma1 152 -----RAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAP 226 (268)
T ss_dssp -----SCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCT
T ss_pred -----ccCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCC
Confidence 122223689999999999999987754 89999999998865321 00001111222222222222
Q ss_pred cEEecCCceeEeccCHHHHHHHHHHHHcCCC---Cc-cEEecCCCc
Q 013467 315 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH---VG-PFNLGNPGE 356 (442)
Q Consensus 315 ~~~~~~~~~~~~~v~v~Dva~ai~~~l~~~~---~g-~~~i~~~~~ 356 (442)
+. +.+...+|+|+++.+++.+.. +| ++.+.+|..
T Consensus 227 l~--------rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~ 264 (268)
T d2h7ma1 227 IG--------WNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH 264 (268)
T ss_dssp TC--------CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred CC--------CCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCcc
Confidence 21 234557999999999996543 45 677776644
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.40 E-value=1.8e-12 Score=118.78 Aligned_cols=223 Identities=13% Similarity=0.005 Sum_probs=122.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVH 195 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~ 195 (442)
||+|+||||++.||+.++++|+++|++|++++|+.......+... ........|...+....+|+++|+|+...
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~id~lv~~Ag~~~--- 74 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTA---EGRKQAIADVLAKCSKGMDGLVLCAGLGP--- 74 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSH---HHHHHHHHHHHTTCTTCCSEEEECCCCCT---
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCH---HHHHHHHHHHHHHhCCCCcEEEEcCCCCC---
Confidence 678999999999999999999999999999998643222111110 01111112223334456999999998633
Q ss_pred ccCChhHHHHHhHHHHHHHHHHHH----HcCC-eEEEeecCccc-cCCCCCCCCC-C----------CCCCCCCCCCCCh
Q 013467 196 YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVY-GDPLQHPQKE-T----------YWGNVNPIGVRSC 258 (442)
Q Consensus 196 ~~~~~~~~~~~nv~gt~~ll~~a~----~~g~-r~i~iSS~~vy-~~~~~~~~~E-~----------~~~~~~~~~~~~~ 258 (442)
..........+|..+...+.+... +... ....+++.... -.....+... . .............
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~~ 154 (257)
T d1fjha_ 75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLA 154 (257)
T ss_dssp TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchHH
Confidence 233456667788888777666543 3333 45555543221 1000000000 0 0000001111236
Q ss_pred hHHHHHHHHHHHHHHHhhc---CCcEEEEeeCceeCCCCccCCCchHHHHHHHHHcCCCcEEecCCceeEeccCHHHHHH
Q 013467 259 YDEGKRTAETLTMDYHRGA---GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 335 (442)
Q Consensus 259 Y~~sK~~~E~~v~~~~~~~---g~~~~iiRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~ 335 (442)
|+.+|.+.+.+++.++.+. |+++..|.||.+-.+....... -..+.....+. ......+...+|+|.
T Consensus 155 Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~--------~~PlgR~g~p~eva~ 224 (257)
T d1fjha_ 155 YAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAKF--------VPPMGRRAEPSEMAS 224 (257)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------C--------CCSTTSCCCTHHHHH
T ss_pred HHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC--CHHHHHHHHhc--------CCCCCCCcCHHHHHH
Confidence 9999999999999987654 8999999999987654210000 00011111111 011224567899999
Q ss_pred HHHHHHcCCC---Cc-cEEecCC
Q 013467 336 GLMRLMEGEH---VG-PFNLGNP 354 (442)
Q Consensus 336 ai~~~l~~~~---~g-~~~i~~~ 354 (442)
++++++.... +| .+.+.+|
T Consensus 225 ~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 225 VIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp HHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHhCchhCCccCceEEeCCC
Confidence 9999986543 46 6666655
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.34 E-value=1.8e-11 Score=116.22 Aligned_cols=161 Identities=9% Similarity=0.019 Sum_probs=105.5
Q ss_pred CCEEEEEc--CCchhHHHHHHHHHhCCCeEEEEeCCCCCCc------------ccccccc-CCCceeEEecc--------
Q 013467 116 GLRIVVTG--GAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------------ENVMHHF-GNPNFELIRHD-------- 172 (442)
Q Consensus 116 ~~~vlVtG--atG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~------------~~~~~~~-~~~~v~~~~~D-------- 172 (442)
.+.+|||| ++.+||..+++.|++.|.+|++.++...... +...... ..........|
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 46899999 5579999999999999999999876432110 0000000 00111122121
Q ss_pred ------------ccc------------cccCCCCEEEEecccCCCC--c----ccCChhHHHHHhHHHHHHHHHHHHHc-
Q 013467 173 ------------VVE------------PLLLEVDQIYHLACPASPV--H----YKFNPVKTIKTNVVGTLNMLGLAKRV- 221 (442)
Q Consensus 173 ------------~~~------------~~~~~~d~Vih~A~~~~~~--~----~~~~~~~~~~~nv~gt~~ll~~a~~~- 221 (442)
+.+ +.+.++|++||+||..... . ..+++...+++|+.++..+++.+...
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 111 1234699999999865432 1 12346778899999999888887653
Q ss_pred --CCeEEEeecCccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhh----cCCcEEEEeeCceeC
Q 013467 222 --GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----AGVEVRIARIFNTYG 291 (442)
Q Consensus 222 --g~r~i~iSS~~vy~~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~v~~~~~~----~g~~~~iiRp~~v~G 291 (442)
+.++|.+||.+.... .| .....|+.+|...+.+++.++.+ +|+++..|.||.|--
T Consensus 162 ~~~GsIv~iss~~~~~~--------------~p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKV--------------VP-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEECGGGTSC--------------CT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred ccccccccceeehhccc--------------cc-ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 237999988765311 01 11356999999999999987754 489999999998743
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.88 E-value=1.3e-10 Score=101.30 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccc-----cccCCCCEEEE
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE-----PLLLEVDQIYH 186 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vih 186 (442)
...++|+|+||||+|+||+.+++.|+++|.+|++++|+.+...+..........+.+...|+.+ ..+.++|+|||
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin 98 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 98 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence 3467789999999999999999999999999999999743322211111111233444555543 35678999999
Q ss_pred ecccC
Q 013467 187 LACPA 191 (442)
Q Consensus 187 ~A~~~ 191 (442)
|||..
T Consensus 99 ~Ag~g 103 (191)
T d1luaa1 99 AGAIG 103 (191)
T ss_dssp CCCTT
T ss_pred cCccc
Confidence 99853
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.13 E-value=6.7e-06 Score=66.97 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=75.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccC---CCc-eeEEeccccccccCCCCEEEEecccC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFG---NPN-FELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~---~~~-v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
||.|+||+|.+|+.++..|..+|. +++.++.... +....+... ... -.++..+-..+.++++|+||.+||..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 799999999999999999988884 7888887421 111111111 111 12333333345688999999999853
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.....+..+.++.|....+.+++.+++.+. .++.+|
T Consensus 80 --~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 80 --RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp --CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 223345777899999999999999999985 555555
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.08 E-value=1.5e-05 Score=64.88 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=75.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCC-cc----ccccc--cCCCceeEE-eccccccccCCCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGR-KE----NVMHH--FGNPNFELI-RHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~-~~----~~~~~--~~~~~v~~~-~~D~~~~~~~~~d~Vih 186 (442)
|||.|+||+|.+|+.++..|+.+| .++..+++..... .+ .+.+. .....++.. ..+-....+.++|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 689999999999999999999998 4899998753211 11 11121 112233332 22223357889999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEe
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLT 228 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~i 228 (442)
+||.. .....+..+.++.|..-.+.+++..++.+. .++.+
T Consensus 81 tAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 81 TSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99853 233345777899999999999999988875 44444
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.5e-05 Score=64.92 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=74.3
Q ss_pred CEEEEEcCCchhHHHHHHHHH-hCC--CeEEEEeCCCCCCccc---cccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLI-ARG--DSVIVVDNFFTGRKEN---VMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll-~~g--~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|||.|+|++|.+|++++..|. +.+ .++..++... ..... +.+.........+...-..+.+.++|+||.+||.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 689999999999999998875 434 6888888642 22111 1121111222233322233467899999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. .....+..+.+..|....+.+.+.+.+.+. .+|.+|
T Consensus 80 ~--~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 80 R--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp C--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred c--CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 3 233346777889999999999999998874 566666
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=3.1e-05 Score=62.95 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-C---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-D---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
|++|.|.||||++|+.+++.|+++. + +++.+.++...... .. .........+ ......+.++|++|.+++.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~--~~~~~~~~~~-~~~~~~~~~~DivF~a~~~- 75 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PS--FGGTTGTLQD-AFDLEALKALDIIVTCQGG- 75 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CG--GGTCCCBCEE-TTCHHHHHTCSEEEECSCH-
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-cc--ccCCceeeec-ccchhhhhcCcEEEEecCc-
Confidence 5789999999999999999888764 3 66666543322211 11 1111111111 1122356789999988741
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
.....+...+.+.|.+.+.++.++.|
T Consensus 76 -----------------~~s~~~~~~~~~~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 76 -----------------DYTNEIYPKLRESGWQGYWIDAASSL 101 (146)
T ss_dssp -----------------HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred -----------------hHHHHhhHHHHhcCCCeecccCCccc
Confidence 22445677777788764444444443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.90 E-value=3.7e-05 Score=62.82 Aligned_cols=110 Identities=20% Similarity=0.264 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---ccccc--cCCCceeEEeccccccccCCCCEEEEe
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHH--FGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
.++||.|+|| |.+|+.++..|+.+|. ++..+|+....... .+.+. +....+.+...|. +.+.++|+||.+
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvit 81 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVIC 81 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEEC
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEEe
Confidence 3458999997 9999999999999874 89999875321111 11111 1122344444443 568899999999
Q ss_pred cccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 188 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 188 A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+|.. ........+.+..|..-.+.+++..++.+. .+|.+|
T Consensus 82 ag~~--~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 82 AGAN--QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CSCC--CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred cccc--cccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 9853 223345667788999999999999988874 566665
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.90 E-value=2.1e-05 Score=64.15 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCcc---ccccc-cCCCceeEEeccccccccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKE---NVMHH-FGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~---~~~~~-~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.|||.|.|+ |++|..++..|+.+| .+|+++|+....... .+.+. .......+...|. +.+.++|+||.+||
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvitag 81 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVITAG 81 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH--HHhccccEEEEecc
Confidence 468999995 999999999999987 589999975321111 11110 0112334445554 35789999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
... ....+..+....|..-.+.+++..++.+. .+|.+|
T Consensus 82 ~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 82 APQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 532 22344666778999999999999999875 455544
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.80 E-value=6.4e-05 Score=61.02 Aligned_cols=95 Identities=19% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
+|+|.|.||||++|+.+++.|.+++| ++..+....... +... ...-++...+.....+.++|+++-+++.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G-k~i~----~~~~~~~~~~~~~~~~~~~d~vf~a~p~-- 74 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG-QRMG----FAESSLRVGDVDSFDFSSVGLAFFAAAA-- 74 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT-CEEE----ETTEEEECEEGGGCCGGGCSEEEECSCH--
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC-ccee----eccccchhccchhhhhccceEEEecCCc--
Confidence 57999999999999999999987765 666664322111 1111 1112333334445566789999876531
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
.....+...+.+.|+++|-.|+..-
T Consensus 75 ----------------~~s~~~~~~~~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 75 ----------------EVSRAHAERARAAGCSVIDLSGALE 99 (144)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEETTCTTT
T ss_pred ----------------chhhhhccccccCCceEEeechhhc
Confidence 1234456666777888888887654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.80 E-value=7.6e-05 Score=61.30 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc---cccc--cCCCceeEEeccccccccCCCCEEE
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN---VMHH--FGNPNFELIRHDVVEPLLLEVDQIY 185 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~---~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vi 185 (442)
+..+.+||.|.|+ |.+|+.++..|...+. +++++|......... +.+. ...........+..+.++.++|+||
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 3455679999997 9999999988888774 888888654321111 1111 0112223333334456778999999
Q ss_pred EecccCCC-Cccc--CChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 186 HLACPASP-VHYK--FNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 186 h~A~~~~~-~~~~--~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
-++|.... ..+. ....+.+..|..-...+++.+++.+. .|+.+|
T Consensus 82 itag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 82 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99986432 1111 24567788999999999999999885 444444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.79 E-value=3.9e-05 Score=61.32 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=49.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------cCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------LLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 188 (442)
|+|+|+|+ |.+|+.+++.|.+.|++|++++.++..- +.... ..++.++.+|..++. +.++|.++-+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~-~~~~~---~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDIC-KKASA---EIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHH---HCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhh-hhhhh---hhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 68999997 9999999999999999999998753211 11111 125678888887652 45688888754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.76 E-value=7.9e-05 Score=62.49 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=73.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC---C----eEEEEeCCCCCCc-cccccc---cCCCc-eeEEeccccccccCCCCE
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG---D----SVIVVDNFFTGRK-ENVMHH---FGNPN-FELIRHDVVEPLLLEVDQ 183 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g---~----~V~~l~r~~~~~~-~~~~~~---~~~~~-v~~~~~D~~~~~~~~~d~ 183 (442)
+.+|.|+||+|.||.+++-.|+..+ . .+..++....... +..... ...+. -..+.++-..+.+.++|+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 4489999999999999999998753 2 4445544221110 111111 11111 233334445567899999
Q ss_pred EEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-C--CeEEEee
Q 013467 184 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTS 229 (442)
Q Consensus 184 Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g--~r~i~iS 229 (442)
||-++|. +........+.+..|....+.+.+++.+. . ++++.+|
T Consensus 104 Vvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 104 ALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp EEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 9999985 34445568889999999999999999885 3 3566665
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.74 E-value=8.3e-05 Score=60.15 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=74.5
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccc---ccccc-CCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKEN---VMHHF-GNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~---~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.||.|+|+ |.+|++++..|+.+|. ++..+++........ +.+.. ......+...+-. +.+.++|+||.+||.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence 37999996 9999999999999985 899998753221111 11110 0112333333333 357889999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
. ........+.+..|..-.+.+++..++.+. .+|.+|
T Consensus 80 ~--~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 80 R--QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp C--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred c--cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 3 233345677889999999999999999875 455555
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.74 E-value=0.00016 Score=58.47 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=74.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCcccccccc-----CCCceeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMHHF-----GNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
|||.|+|| |.+|+.++..|+..| .++..+|+............. ......+...+. .+.+.++|+||-+||
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence 68999996 999999999999987 589999876432221111110 112333432222 346889999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. ........+....|..-...+++.+++.+. .++.+|
T Consensus 79 ~~--~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 79 LP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp CC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred cC--CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 53 233345677888999999999999988875 455554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.73 E-value=0.00018 Score=58.08 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=70.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccc---cccC-CCceeEEeccccccccCCCCEEEEecccC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVM---HHFG-NPNFELIRHDVVEPLLLEVDQIYHLACPA 191 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~---~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~A~~~ 191 (442)
||.|+|+ |.+|+.++..|+.++. ++.++|+.......... +... ........+ ....+.++|+||-+||..
T Consensus 3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~~~~~adivvitag~~ 79 (142)
T d1y6ja1 3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG--DYSDVKDCDVIVVTAGAN 79 (142)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECCCC-
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC--cHHHhCCCceEEEecccc
Confidence 7999997 9999999999999874 89999986543322211 1111 122333333 345688999999999853
Q ss_pred CCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 192 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 192 ~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.....+..+.+..|..-...+++.+++.+. .+|.+|
T Consensus 80 --~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 80 --RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred --cCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 223345777889999999999999999875 455555
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.71 E-value=0.00012 Score=60.37 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=74.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccc---cccc--cCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKEN---VMHH--FGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~---~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.+||.|.|+ |.+|+.++..|..+|. ++..+|+........ +.+. +..........| ...+.++|+||.+|
T Consensus 20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVitA 96 (160)
T d1i0za1 20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVVTA 96 (160)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc--hhhcccccEEEEec
Confidence 458999996 9999999999999985 899998753222111 1111 111122222233 34688999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
|... ....+..+.+..|..-.+.++...++.+. -+|.+|
T Consensus 97 g~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 97 GVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp SCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9633 22345667888999999999999998874 566666
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.71 E-value=9.1e-05 Score=60.85 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC----e-E--EEEeCCCCCCcccccc------ccCCCce-eEEeccccccccCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD----S-V--IVVDNFFTGRKENVMH------HFGNPNF-ELIRHDVVEPLLLE 180 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~----~-V--~~l~r~~~~~~~~~~~------~~~~~~v-~~~~~D~~~~~~~~ 180 (442)
++|||.|+||+|++|++++..|...+. . + ..++- ....+.... ....... .+...+-....+.+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 467999999999999999999988753 1 1 22211 111111111 1111122 23333444567899
Q ss_pred CCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC--eEEEee
Q 013467 181 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA--RFLLTS 229 (442)
Q Consensus 181 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~--r~i~iS 229 (442)
+|+||-+||.. .....+..+.+..|..-.+.+.+...+. .. .++.+|
T Consensus 81 advViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 81 ADYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp CSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 99999999863 3344567788899999999999999885 33 455555
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.66 E-value=0.00014 Score=58.60 Aligned_cols=108 Identities=17% Similarity=0.045 Sum_probs=75.2
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCC-Cc----ccccccc-CCCceeEEeccccccccCCCCEEEEecc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTG-RK----ENVMHHF-GNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~-~~----~~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
||.|+||+|.+|+.++..|..++. ++..++..... .. ..+.+.. -.....+...|. +.+.++|+||-+||
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~--~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY--EDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG--GGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH--HHhhhcCEEEEecc
Confidence 799999999999999999999985 78888753211 11 1111111 123344444443 45789999999998
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .....+..+.++.|..-.+.+++..++.+. .++.+|
T Consensus 80 ~~--~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 80 IP--RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp CC--CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred cc--cccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 53 223345778899999999999999999874 566665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=0.00014 Score=58.68 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=73.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCcccccc---cc-CCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKENVMH---HF-GNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~~~~---~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|||.|.|+ |.+|+.++..|+.++ .++..+|+..........+ .. -.....+...| .+.+.++|+||-+||.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc--HHHhcCCCEEEEeccc
Confidence 68999996 999999999998887 4899988753211111111 00 01233444443 3468899999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. .......+.+..|..-.+.+++..++.+. .++.+|
T Consensus 78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 32 23345667888999999999999999875 455444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=8.3e-05 Score=61.55 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=45.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|||+|.|+ |.+|+.++..|.+.||+|.+++|................................+|+||.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEee
Confidence 79999997 999999999999999999999996543222111111111111111111223445799999865
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.51 E-value=0.00042 Score=58.21 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCC-CCCc-cccc---ccc-CCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFF-TGRK-ENVM---HHF-GNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~-~~~~-~~~~---~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|++|.|.|||||+|+.|++-|.++. .+|..+.-.. .... +... ..+ ......+...+..+....++|+|+.+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 6799999999999999999999985 4676554221 1111 1111 111 112223333333344556799999876
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcc
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~v 233 (442)
.. .....++....+.++++|-.|+..-
T Consensus 81 p~------------------~~s~~~~~~~~~~~~~vIDlSadfR 107 (179)
T d2g17a1 81 AH------------------EVSHDLAPQFLQAGCVVFDLSGAFR 107 (179)
T ss_dssp CH------------------HHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred cc------------------hhHHHHhhhhhhcCceeeccccccc
Confidence 31 1122355566677889998888654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.47 E-value=0.00023 Score=57.46 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=73.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCccc---ccccc--CCCceeEEe-ccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKEN---VMHHF--GNPNFELIR-HDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~~---~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A 188 (442)
|||.|.|+ |.+|..++..|+.+| .++..+|+........ +.+.. -.....+.. .| .+.+.++|+||-+|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d--~~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC--HHHhccccEEEEec
Confidence 68999996 999999999999887 4799988743221111 11111 111223332 23 25788999999999
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
|.. .....+..+.+..|..-...+++.+++.+. .++.+|
T Consensus 78 g~~--~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 78 GLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CCC--CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred ccc--CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 853 333445777888999999999999999874 455554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.46 E-value=0.00016 Score=59.24 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-------eEEEEeCCCCCCc-cccc---cccCCCc-eeEEeccccccccCCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-------SVIVVDNFFTGRK-ENVM---HHFGNPN-FELIRHDVVEPLLLEVD 182 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-------~V~~l~r~~~~~~-~~~~---~~~~~~~-v~~~~~D~~~~~~~~~d 182 (442)
+++||.|+||+|.+|++++..|+..+- +++.++....... +.+. ....... ..+...+-..+.+.++|
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 467999999999999999999986531 3444443211110 1110 0111112 22333333446788999
Q ss_pred EEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHc-CC--eEEEee
Q 013467 183 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA--RFLLTS 229 (442)
Q Consensus 183 ~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-g~--r~i~iS 229 (442)
+||-++|... ....+..+.+..|..-.+.+.+...+. +. .+|.+|
T Consensus 82 vVVitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 82 VAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp EEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 9999998532 333455667889999999999888664 53 445555
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=8.6e-05 Score=61.15 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=72.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCcc---cccccc--CCCceeEEeccccccccCCCCEEEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKE---NVMHHF--GNPNFELIRHDVVEPLLLEVDQIYH 186 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih 186 (442)
.+..||.|+|+ |.+|..++..|..+|. ++..+|+....... .+.+.. ..........| ...+.++|+||.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d--~~~~~~adivvi 93 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD--YNVSANSKLVII 93 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS--GGGGTTEEEEEE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc--hhhhccccEEEE
Confidence 34458999996 9999999999999975 89999875322111 111111 11122222333 345688999999
Q ss_pred ecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 187 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
+||.... ...+..+.++.|..-.+.++...++.+. .++.+|
T Consensus 94 tag~~~~--~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 94 TAGARMV--SGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp CCSCCCC--TTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred ecccccC--CCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 9985332 2334556678899999999998888874 566666
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00039 Score=51.57 Aligned_cols=90 Identities=23% Similarity=0.242 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
.++++|+|.|. |--|..+++.|.++|++|++.+.......... +. ..+.+......+..+.++|.||-.-|...
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~d~vi~SPGi~~- 76 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDK---LP-EAVERHTGSLNDEWLMAADLIVASPGIAL- 76 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGG---SC-TTSCEEESBCCHHHHHHCSEEEECTTSCT-
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHH---Hh-hccceeecccchhhhccCCEEEECCCCCC-
Confidence 35678999996 88999999999999999999997543222211 11 23444444444555677999998776421
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
. ..+++.|++.|+.+|
T Consensus 77 ~-----------------~~~~~~a~~~gi~ii 92 (93)
T d2jfga1 77 A-----------------HPSLSAAADAGIEIV 92 (93)
T ss_dssp T-----------------SHHHHHHHHTTCEEE
T ss_pred C-----------------CHHHHHHHHcCCCeE
Confidence 1 146888888887665
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.39 E-value=0.00032 Score=56.67 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=55.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-C---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-D---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
|||.|.||||++|+.+++.|+++. | ++..+..+....+ . ..+.. +...+........+.++|+||.+...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk--~-~~~~~-~~~~~~~~~~~~~~~~~DvvF~alp~-- 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--A-PNFGK-DAGMLHDAFDIESLKQLDAVITCQGG-- 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB--C-CCSSS-CCCBCEETTCHHHHTTCSEEEECSCH--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc--c-cccCC-cceeeecccchhhhccccEEEEecCc--
Confidence 689999999999999999998753 3 5555543221111 1 11111 11111111222346789999987641
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCe--EEEeecCccc
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR--FLLTSTSEVY 234 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r--~i~iSS~~vy 234 (442)
.-+..+...+.+.|.+ +|=.|+..-+
T Consensus 75 ----------------~~s~~~~~~l~~~g~~~~VIDlSsdfR~ 102 (147)
T d1mb4a1 75 ----------------SYTEKVYPALRQAGWKGYWIDAASTLRM 102 (147)
T ss_dssp ----------------HHHHHHHHHHHHTTCCSEEEESSSTTTT
T ss_pred ----------------hHHHHHhHHHHHcCCceEEEeCCccccc
Confidence 1134566777777864 6666765543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.37 E-value=0.00054 Score=52.80 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=70.2
Q ss_pred CCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 109 ~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|.-...++++|+|+| .|-+|..-++.|++.|.+|++++... .+.........++.+.+....+..+.+++.|+.+.
T Consensus 5 Pi~l~l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~---~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at 80 (113)
T d1pjqa1 5 PIFCQLRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTF---IPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (113)
T ss_dssp EEEECCBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSC---CHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred ceEEEeCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccC---ChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecC
Confidence 444556778999999 59999999999999999999987532 22333333456788888888888888999988654
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
+ +-.-...+.+.|++.|+ +|.+.
T Consensus 81 ~-----------------d~~~n~~i~~~a~~~~i-lVNv~ 103 (113)
T d1pjqa1 81 D-----------------DDTVNQRVSDAAESRRI-FCNVV 103 (113)
T ss_dssp S-----------------CHHHHHHHHHHHHHTTC-EEEET
T ss_pred C-----------------CHHHHHHHHHHHHHcCC-EEEeC
Confidence 2 11112357788888774 45544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.30 E-value=0.00023 Score=57.67 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=70.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCCCCCcc---cccccc--CCCceeEEeccccccccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFFTGRKE---NVMHHF--GNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
+||.|+|+ |.+|+.++..|+.+| .+++.+++....... .+.+.. ......+...| .+.+.++|+||-+||
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d--~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND--WAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC--GGGGTTCSEEEECCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC--HHHhccccEEEEecc
Confidence 48999995 999999999999887 488888875321111 111111 11233344333 345789999999998
Q ss_pred cCCCCcc--cCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 190 PASPVHY--KFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
....... ..+..+.++.|..-.+.+++..++.+. -||.+|
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5432111 112345678899999999999999875 455555
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.27 E-value=0.00013 Score=61.78 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|||.|+||+|.+|+.|++.|++.||+|++.+|+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6899999999999999999999999999999964
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.17 E-value=0.00028 Score=56.90 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=66.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCcccccccc-----CCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHF-----GNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+||.|+|+ |.+|..++..|+.++. ++..+|...........+.. ......+...+- -..+.++|+||-+||.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~advvvitag~ 79 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSDVIVVTSGA 79 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCCEEEEeeec
Confidence 48999996 9999999999988774 88888875432211111110 111223332211 2356889999999985
Q ss_pred CCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
.. ....+..+.+..|..-...+++...+.+. .++.+|
T Consensus 80 ~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 80 PR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp C-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred cC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 32 22334556778999999999999988875 455544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.14 E-value=0.0017 Score=52.53 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=71.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccc---cccc--cCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKEN---VMHH--FGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~---~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+||.|.|+ |.+|+.++..|..++ .++.++|+........ +.+. +......+...+ ..+.+.++|+||.++|.
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag~ 81 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEeccc
Confidence 38999996 999999998777776 4888888754322111 1111 011222232222 33567889999999986
Q ss_pred CCC-Ccc--cCChhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 191 ASP-VHY--KFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 191 ~~~-~~~--~~~~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
... ..+ ..+..+.+..|......+++.+++.+. .++.+|
T Consensus 82 ~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 82 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 432 222 123566789999999999999999885 455555
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.03 E-value=0.00031 Score=58.46 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
.|+|+|.|| |++|+++++.|.++||+|++++|+..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChH
Confidence 468999996 99999999999999999999999644
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.0015 Score=51.34 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=53.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCcc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHY 196 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~~ 196 (442)
|||.|.|++|-+|+.+.+.+.++|+++++..- .+ ....+.++|+||-.--
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id----------------------~~-~~~~~~~~DVvIDFS~------- 50 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD----------------------VN-GVEELDSPDVVIDFSS------- 50 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEE----------------------TT-EEEECSCCSEEEECSC-------
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEEC----------------------CC-cHHHhccCCEEEEecC-------
Confidence 68999999999999999999999998765421 00 1123456899997642
Q ss_pred cCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 197 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 197 ~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
-.++...++.|.+.++.+|.=+|
T Consensus 51 -----------p~~~~~~l~~~~~~~~p~ViGTT 73 (128)
T d1vm6a3 51 -----------PEALPKTVDLCKKYRAGLVLGTT 73 (128)
T ss_dssp -----------GGGHHHHHHHHHHHTCEEEECCC
T ss_pred -----------HHHHHHHHHHHHhcCCCEEEEcC
Confidence 23456789999999988765444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=0.0016 Score=51.47 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=47.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccc------cCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL------LLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 188 (442)
|+++|.|+ |-+|+.+++.|.++|++|++++.+.. ... .+.......+.+|..++. +.++|.||-+.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~----~~~-~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE----KVN-AYASYATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH----HHH-HTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHH----HHH-HHHHhCCcceeeecccchhhhccCCccccEEEEEc
Confidence 46889985 99999999999999999999986432 211 123344566777876652 45688888654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.94 E-value=0.004 Score=50.56 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=55.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC---eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD---SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
+|.|.||||++|+.|++.|.++.+ ++..+..... ..+... ...-.....+..+....++|.++-+++.
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-~G~~~~----~~~~~~~~~~~~~~~~~~~d~~f~~~~~---- 73 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-AGKSLK----FKDQDITIEETTETAFEGVDIALFSAGS---- 73 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-TTCEEE----ETTEEEEEEECCTTTTTTCSEEEECSCH----
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-cccccc----ccCCcccccccchhhhhhhhhhhhccCc----
Confidence 799999999999999998888864 3333332111 111110 0111222333444556678888876541
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCccc
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy 234 (442)
..+......+.+.|+++|=.|+..-+
T Consensus 74 --------------~~s~~~~~~~~~~~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 74 --------------STSAKYAPYAVKAGVVVVDNTSYFRQ 99 (154)
T ss_dssp --------------HHHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred --------------cchhhHHhhhccccceehhcChhhhc
Confidence 12334555566678899888886643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.83 E-value=0.0019 Score=53.06 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=42.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
|||.|.| .|.+|+.+++.|.+.|++|++.+|+....+.... ...++....+. +.+.++|+||-+
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~~~~~~~--~~~~~~DiIila 64 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVDEAGQDL--SLLQTAKIIFLC 64 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCSEEESCG--GGGTTCSEEEEC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccceeeeec--cccccccccccc
Confidence 6899998 5999999999999999999999886332221111 11122222222 356789998854
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.79 E-value=0.00056 Score=55.63 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+..+++|.|.||.|.+|+.+++.|.+.||+|.+.+|.
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~ 42 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE 42 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccc
Confidence 4556799999999999999999999999999999885
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.64 E-value=0.00044 Score=56.88 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.++++|+|+|+ |-+|+.+++.|.++|. +|++..|... +.+.+...+ +......+-....+.++|+||++.+.
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~-ka~~l~~~~---~~~~~~~~~~~~~l~~~Divi~atss 94 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-RAVELARDL---GGEAVRFDELVDHLARSDVVVSATAA 94 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-HHHHHHHHH---TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHH-HHHHHHHhh---hcccccchhHHHHhccCCEEEEecCC
Confidence 35669999997 9999999999999997 6888877422 222222222 34555556566677889999998763
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0028 Score=51.91 Aligned_cols=97 Identities=16% Similarity=0.280 Sum_probs=58.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEE-EeCCCCCCcc-ccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIV-VDNFFTGRKE-NVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~-l~r~~~~~~~-~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
.++|+|.|++|-+|+.+++.+.+. +.++.. ++|....... ................|-.+..+..+|+||-..
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs---- 79 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT---- 79 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS----
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec----
Confidence 458999999999999999999887 456553 3443221111 111111111111111223345667899999753
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeec
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS 230 (442)
.-.++...++.|.+.++.+|.=+|
T Consensus 80 --------------~p~~~~~~~~~a~~~~~~~ViGTT 103 (162)
T d1diha1 80 --------------RPEGTLNHLAFCRQHGKGMVIGTT 103 (162)
T ss_dssp --------------CHHHHHHHHHHHHHTTCEEEECCC
T ss_pred --------------cHHHHHHHHHHHHhccceeEEecC
Confidence 234566789999999987775544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.60 E-value=0.0044 Score=50.96 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|++|+|.| .|.+|..+++.|.+.|+ +|++.+++.+...... ....++....+........+|.||.+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIIDEGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH----HhhcchhhhhhhhhhhccccccccccC
Confidence 56899998 69999999999999986 7888887532221111 112233334444444555789999765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.55 E-value=0.00056 Score=56.90 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEe-ccccc--cccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIR-HDVVE--PLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~-~D~~~--~~~~~~d~Vih~A~ 189 (442)
+.+|+|+||+|.+|...+..+...|.+|++++++.... +.... +.... .++ .|..+ ....++|+||.+.|
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~-~~~~~-lGa~~--~i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL-ALPLA-LGAEE--AATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS-HHHHH-TTCSE--EEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CCEEEEEeccccchhhhhhhhccccccccccccccccc-ccccc-cccce--eeehhhhhhhhhccccccccccccc
Confidence 44899999999999999998888999999998754322 22222 22111 121 12111 23457999999765
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.50 E-value=0.0012 Score=55.09 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVD 147 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~ 147 (442)
|++|.|.||||++|+.+++.|.++.+ ++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 67999999999999999999988754 666664
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.0043 Score=53.64 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=42.3
Q ss_pred cCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccc-------ccccCCCCEEEEecccCC
Q 013467 123 GGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV-------EPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 123 GatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-------~~~~~~~d~Vih~A~~~~ 192 (442)
-.||.+|.+|++++.++|++|+++.-...... ...+..+...-. ...+.++|++|++|++..
T Consensus 29 ~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~--------p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 29 HSSGKMGFAIAAAAARRGANVTLVSGPVSLPT--------PPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp CCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC--------CTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred CCcHHHHHHHHHHHHHcCCchhhhhcccccCc--------ccccccceehhhHHHHHHHHhhhccceeEeeeechhh
Confidence 35899999999999999999999975332111 123444433221 124467999999999754
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.0011 Score=47.09 Aligned_cols=35 Identities=40% Similarity=0.359 Sum_probs=31.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+.+|+|+||+|.+|...+..+...|.+|+++.++.
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 34899999999999999998888999999998753
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.30 E-value=0.0029 Score=53.00 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=26.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEe
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVD 147 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~ 147 (442)
..||.|.||||++|+.+++.|.++.+ ++..+.
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 45899999999999999999988754 666554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0023 Score=52.94 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.++++|+|.|+ |+.++.++..|.+.|.+|+++.|.... .+.+...+. ...+.... ..+....++|+|||+...
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~k-a~~l~~~~~~~~~~~~~~--~~~~~~~~~dliIN~Tp~ 89 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSR-AEELAKLFAHTGSIQALS--MDELEGHEFDLIINATSS 89 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHH-HHHHHHHTGGGSSEEECC--SGGGTTCCCSEEEECCSC
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHH-HHHHHHHHhhcccccccc--cccccccccceeeccccc
Confidence 35679999995 999999999999999999999886432 222222221 12233333 333344678999998743
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.22 E-value=0.0044 Score=52.71 Aligned_cols=32 Identities=44% Similarity=0.603 Sum_probs=29.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|+|.|.| .|++|..++..|++.||+|+++|.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 6899997 7999999999999999999999864
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.17 E-value=0.0079 Score=46.53 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
.++|+|.|| |++|..++..|.++|.+|+++.+...
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 358999994 99999999999999999999998653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.00088 Score=55.76 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCC-ceeEEeccccccc-----cCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP-NFELIRHDVVEPL-----LLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~-----~~~~d~Vih~A~ 189 (442)
+.+|||+||+|.+|...+..+...|.+|++++++.. +.+.... +... -++..+.|..+.. -.++|+||.+.|
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-~~~~~~~-~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g 106 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-GQKIVLQ-NGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA 106 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-HHHHHHH-TTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred CCEEEEEeccccccccccccccccCccccccccccc-ccccccc-cCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence 448999999999999999999889999999987432 2222222 1111 1122222332221 235899998875
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.09 E-value=0.068 Score=41.45 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCC---chhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGA---GFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGat---G~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|.|+||+ +..|..+.+.|.+.| ++|+.+... .+... ++. ...++.+ .-..+|.++-+.
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~----~~~i~------G~~-~y~sl~d-lp~~vDlvvi~v- 72 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK----EEEVQ------GVK-AYKSVKD-IPDEIDLAIIVV- 72 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS----CSEET------TEE-CBSSTTS-CSSCCSEEEECS-
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC----ccccC------CeE-eecchhh-cCCCCceEEEec-
Confidence 345689999998 999999999987766 688888431 11111 111 0111111 123578888653
Q ss_pred cCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeec
Q 013467 190 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230 (442)
Q Consensus 190 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS 230 (442)
.-..+..+++.|.+.|+ .++.+|+
T Consensus 73 -----------------p~~~~~~~~~~~~~~g~~~~vi~s~ 97 (129)
T d2csua1 73 -----------------PKRFVKDTLIQCGEKGVKGVVIITA 97 (129)
T ss_dssp -----------------CHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred -----------------ChHHhHHHHHHHHHcCCCEEEEecc
Confidence 23345568899989998 5666665
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.07 E-value=0.0031 Score=51.04 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=44.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|||.|.| .|.+|+.+++.|++.|++|++.++........... .+.+ .+..++.+.++|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~-----~~~~--~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-----TVGV--TETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----HHTC--EECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh-----cccc--cccHHHHHhhcCeEEEEe
Confidence 6899998 79999999999999999999887643322221111 1111 123445677899999764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.03 E-value=0.0046 Score=51.10 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccC-CCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG-NPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
.++++|+|.| +|..|+.++..|.+.+.+|+++.|+... .+.+.+.+. ...+..... .+..+..+|+|||+...
T Consensus 16 ~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~-a~~l~~~~~~~~~~~~~~~--~~~~~~~~diiIN~tp~ 89 (171)
T d1p77a1 16 RPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSK-TKELAERFQPYGNIQAVSM--DSIPLQTYDLVINATSA 89 (171)
T ss_dssp CTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHH-HHHHHHHHGGGSCEEEEEG--GGCCCSCCSEEEECCCC
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHH-HHHHHHHHhhccccchhhh--ccccccccceeeecccc
Confidence 3466899999 5889999999999988899999986432 222222221 122333333 33456789999999754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.02 E-value=0.001 Score=55.81 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=46.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCc-eeEEecccccc-----ccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN-FELIRHDVVEP-----LLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~-----~~~~~d~Vih~A~ 189 (442)
+.+|+|+||+|.+|...+.-....|.+|++++++.+ +.+..... .... ++..+.|..+. .-.++|+||++.|
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~-~~~~~~~~-Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE-KIAYLKQI-GFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH-HHHHHHHT-TCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH-HHHHHHhh-hhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 458999999999999999988889999999987532 22222221 2111 12122222222 2246999999876
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.01 E-value=0.0034 Score=52.24 Aligned_cols=71 Identities=20% Similarity=0.114 Sum_probs=44.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc----ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP----LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~~~~d~Vih~A~ 189 (442)
.+|||+||+|.+|...++-+...|.+|++.+++..+. +.. ..+....+.-.+.+..+. .-.++|+||.+.|
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-~~~-~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYL-RVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHH-HHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-HHH-HhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 3799999999999999998889999999998754332 212 222222211111111111 1236999999876
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.77 E-value=0.015 Score=48.21 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=46.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCC-cccccc-------ccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGR-KENVMH-------HFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~-~~~~~~-------~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|+|.|.|+ |-.|..++..|.+.|++|++..|..... .+.... ........+...+-.++++.++|+||.+.
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 78999994 9999999999999999999998742210 000000 00112223344455566788999999754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.73 E-value=0.002 Score=54.23 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
-++|.|.|| |.+|+.++..++..|++|++++++..
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 357999996 99999999999999999999998643
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.71 E-value=0.0025 Score=52.24 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=45.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|++|.|.| .|.+|+.+++.|++.||+|++.+|+..... .+.. ......+...+.+..+|+|+-+.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~-~~~~------~~~~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVD-GLVA------AGASAARSARDAVQGADVVISML 65 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHH-HHHH------TTCEECSSHHHHHTSCSEEEECC
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhh-hhhh------hhccccchhhhhccccCeeeecc
Confidence 56899998 799999999999999999999988533211 1111 11222333445667799888765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.51 E-value=0.0064 Score=50.37 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=30.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|||.|.|+ |-+|..++..|.++||+|++++|..
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999996 9999999999999999999999853
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.46 E-value=0.0048 Score=50.79 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=30.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
+|||+||+|.+|...++-....|.+|++++++.+
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~ 59 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE 59 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence 6999999999999999887778999999998644
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.0018 Score=54.16 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=45.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCc-eeEEeccccccc-----cCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN-FELIRHDVVEPL-----LLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~-----~~~~d~Vih~A~ 189 (442)
+.+|||+||+|.+|...+..+...|.+|++++++.+ +.+.+.. +.... ++..+.|..+.. -.++|+||.+.|
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~-~~~~l~~-~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g 103 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA-KREMLSR-LGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA 103 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH-HHHHHHT-TCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred CCEEEEECCCCCcccccchhhccccccceeeecccc-ccccccc-ccccccccCCccCHHHHHHHHhCCCCEEEEEeccc
Confidence 348999999999999999988888999999987532 2222222 11111 111222332221 146999999876
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.35 E-value=0.016 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++++|.|| |++|..++..|.+.|.+|+++.|..
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 55 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence 458999995 9999999999999999999998753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0019 Score=53.79 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=46.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCC-ceeEEeccccccc-----cCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP-NFELIRHDVVEPL-----LLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~-----~~~~d~Vih~A~ 189 (442)
.+|+|+||+|.+|...+.-+...|.+|++.+++....+ .... +... -++..+.|..+.. -.++|+|+.+.+
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~-~~~~-lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g 106 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ-SALK-AGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG 106 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHH-HTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHH-HHHh-cCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence 48999999999999999988888999999988543221 1222 2211 1222233333321 135899999875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.24 E-value=0.0098 Score=48.79 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
+++|+|.|+ |+.|+.++..|.+.|. +|.++.|+.+ +.+.+...+. ...++ .....++|+|||+-..
T Consensus 17 ~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~-ka~~L~~~~~---~~~~~----~~~~~~~DliINaTpi 83 (167)
T d1npya1 17 NAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVK-TGQYLAALYG---YAYIN----SLENQQADILVNVTSI 83 (167)
T ss_dssp TSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHH-HHHHHHHHHT---CEEES----CCTTCCCSEEEECSST
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHH-HHHHHHHhhh---hhhhh----cccccchhhheecccc
Confidence 458999995 9999999999999996 7888888543 2222222221 12211 1123468999997643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0064 Score=49.89 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCc-eeEEeccccccccCCCCEEEEecc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN-FELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
+.+|+|.|+ |.||...+..+...|.+++++++..... +... .+.... ++..+.+.......++|++|.+.|
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~-~lGad~~i~~~~~~~~~~~~~~~D~vid~~g 102 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAK-ALGADEVVNSRNADEMAAHLKSFDFILNTVA 102 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHH-HHTCSEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH-HHHh-ccCCcEEEECchhhHHHHhcCCCceeeeeee
Confidence 348999986 8999999988888899999988754322 2222 222211 111112222334467999999886
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.026 Score=45.22 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=50.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
.|+|.|. |-+|..++++|.++|++|++++.......... ......++.++.+|..++ .+.++|.||-+.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~-~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQL-EQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH-HHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHH-HHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 5899996 89999999999999999999986432211111 222335788999998776 345689998765
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.02 E-value=0.039 Score=45.08 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=51.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPV 194 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~ 194 (442)
.+||.|.| .|.+|+..++.|.+. +.+++++........ ........+-.+....++|+|+.+.....
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---------~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~-- 70 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---------TKTPVFDVADVDKHADDVDVLFLCMGSAT-- 70 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---------SSSCEEEGGGGGGTTTTCSEEEECSCTTT--
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccccc---------cccccccchhhhhhccccceEEEeCCCcc--
Confidence 45899999 699999999999876 457776543222211 11223333344445678999998764211
Q ss_pred cccCChhHHHHHhHHHHHHHHHHHHHcCCeEE
Q 013467 195 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 226 (442)
Q Consensus 195 ~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i 226 (442)
...++..|.++|+.+|
T Consensus 71 ----------------h~~~a~~aL~aG~~vv 86 (170)
T d1f06a1 71 ----------------DIPEQAPKFAQFACTV 86 (170)
T ss_dssp ----------------HHHHHHHHHTTTSEEE
T ss_pred ----------------cHHHHHHHHHCCCcEE
Confidence 1235677777787665
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.86 E-value=0.02 Score=47.24 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=44.4
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCC-ceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP-NFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
.+|.|.| -|.+|..+++.|++.||+|++.+|..+...+......... .......+.....+..+|.+|-+.
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~ 74 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV 74 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence 3799999 6999999999999999999999986433222111111111 111112222233566788888764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.01 Score=48.60 Aligned_cols=70 Identities=24% Similarity=0.237 Sum_probs=45.1
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEec----cccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH----DVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----D~~~~~~~~~d~Vih~A~~ 190 (442)
+.+|+|+|+ |.+|...+..+...|.+|++++++.. +.+.... +... .+++. +..+....++|+|+.+.+.
T Consensus 28 g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~-k~~~a~~-lGa~--~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 28 GKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSR-KREDAMK-MGAD--HYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSST-THHHHHH-HTCS--EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCEEEEECC-CCcchhHHHHhhhccccccccccchh-HHHHhhc-cCCc--EEeeccchHHHHHhhhcccceEEEEecC
Confidence 348999996 99999998877778999999998644 2222222 2211 12221 2233345578999998763
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.73 E-value=0.028 Score=43.29 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++|+|.| .|++|..++..|.++|.+|+++.+..
T Consensus 30 ~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence 45899998 59999999999999999999998753
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.72 E-value=0.021 Score=43.65 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++|+|.|| |++|-.++..|.+.|.+|+++.|..
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 468999995 9999999999999999999998753
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.01 Score=49.22 Aligned_cols=34 Identities=41% Similarity=0.427 Sum_probs=30.9
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
+|+|+||+|.+|...++-....|.+|++++++.+
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~ 67 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred cEEEEEccccchHHHHHHHHHcCCCeEEEecchh
Confidence 7999999999999999988889999999998543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.023 Score=43.29 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=29.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+++|+|.|| |++|..++..|.+.|.+|+++.|.
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~ 53 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMF 53 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeec
Confidence 358999994 999999999999999999999875
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.57 E-value=0.067 Score=41.81 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhC-CCeEEEE-eCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCCCc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVV-DNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVH 195 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l-~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~~~ 195 (442)
||.|.|++|-+|+.+++.+.+. ++++... ++. + ++......++|+||-+.-+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-----~----------------~~~~~~~~~~DvvIDFS~p----- 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-----D----------------PLSLLTDGNTEVVIDFTHP----- 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-----C----------------CTHHHHTTTCSEEEECCCT-----
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----C----------------chhhhccccCCEEEEcccH-----
Confidence 6999999999999999998776 4566543 221 0 0111122468999986532
Q ss_pred ccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEee
Q 013467 196 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229 (442)
Q Consensus 196 ~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iS 229 (442)
..+...++.|.+.|+.+|.=+
T Consensus 55 -------------~~~~~~~~~~~~~~~~~ViGT 75 (135)
T d1yl7a1 55 -------------DVVMGNLEFLIDNGIHAVVGT 75 (135)
T ss_dssp -------------TTHHHHHHHHHHTTCEEEECC
T ss_pred -------------HHHHHHHHHHHhcCCCEEEec
Confidence 234567899999998776533
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.1 Score=37.44 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=45.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
|||.+.|-.|-==+.|++.|.++|+.|..-|+......+ .+...++.+..+ -....+.+.|.||...+.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----~L~~~Gi~i~~g-h~~~~i~~~d~vV~SsAI 70 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----YLRKLGIPIFVP-HSADNWYDPDLVIKTPAV 70 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----HHHHTTCCEESS-CCTTSCCCCSEEEECTTC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----HHHHCCCeEEee-ecccccCCCCEEEEecCc
Confidence 688899854433347899999999999999975322222 233345555443 222335679999998875
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.39 E-value=0.018 Score=46.20 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=42.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHL 187 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 187 (442)
|+|.+.|+ |-+|+.+++.|++.| ++|++.+|+.+.. +.+... ..+.... ..+.+.++|+||-+
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~---~~~~~~~---~~~~v~~~Div~la 64 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKE---LGVETSA---TLPELHSDDVLILA 64 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHH---TCCEEES---SCCCCCTTSEEEEC
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhh---ccccccc---ccccccccceEEEe
Confidence 68999985 999999999999987 8999998864322 222221 1233322 12335678999964
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.36 E-value=0.13 Score=37.50 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCchhH-HHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVG-SHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG-~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
...++|.+.|- |.+| +.|++.|.++|++|..-|+......+.+ ...++.+..++..+ .+.+.|.||...|.
T Consensus 6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L----~~~Gi~v~~g~~~~-~i~~~d~vV~S~AI 77 (96)
T d1p3da1 6 RRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRL----AQAGAKIYIGHAEE-HIEGASVVVVSSAI 77 (96)
T ss_dssp TTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHH----HHTTCEEEESCCGG-GGTTCSEEEECTTS
T ss_pred hhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHH----HHCCCeEEECCccc-cCCCCCEEEECCCc
Confidence 34568999875 4444 7789999999999999998532222222 22456666555444 35789999988764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.36 E-value=0.049 Score=44.24 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=28.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+|+|+| .|.+|...+..+...|.+|++++++.
T Consensus 28 ~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 28 TTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEc-ccccchhhHhhHhhhcccccccchHH
Confidence 3899997 69999999998888999999998753
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.038 Score=42.64 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=30.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++++|.|| |++|-.++..|.+.|.+|+++.|..
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence 358999995 9999999999999999999998853
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.34 E-value=0.025 Score=46.45 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCEEEEEcCCchhHHH--HHHHHHhC----CCeEEEEeCCCCCCccc---cccc--cCCCceeEEeccccccccCCCCEE
Q 013467 116 GLRIVVTGGAGFVGSH--LVDRLIAR----GDSVIVVDNFFTGRKEN---VMHH--FGNPNFELIRHDVVEPLLLEVDQI 184 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~--lv~~Ll~~----g~~V~~l~r~~~~~~~~---~~~~--~~~~~v~~~~~D~~~~~~~~~d~V 184 (442)
.|||.|.|| |.+|.. ++..|+.. +.+++.+|++....+.. ..+. .......+...+-.++++.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 469999996 888864 45556654 35999998853321110 1111 122345555555556688999999
Q ss_pred EEecccCCCCcccCChh------------------------HHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 185 YHLACPASPVHYKFNPV------------------------KTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 185 ih~A~~~~~~~~~~~~~------------------------~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
|+.++......+..... .....|+.-.+.+++..++... .+|.+|
T Consensus 81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 99987432111100000 0012477778888888888764 566555
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.051 Score=52.88 Aligned_cols=101 Identities=11% Similarity=0.181 Sum_probs=65.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCC----------cccc--------cccc--CCC--ceeEEeccc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGR----------KENV--------MHHF--GNP--NFELIRHDV 173 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~----------~~~~--------~~~~--~~~--~v~~~~~D~ 173 (442)
.+|+|.|+ |.+|.++++.|...|. +++++|...-.. .+.+ ...+ -++ +++.+..+.
T Consensus 26 s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~~ 104 (529)
T d1yova1 26 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESP 104 (529)
T ss_dssp CEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSCH
T ss_pred CCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCCc
Confidence 48999996 7899999999999995 888887542111 0000 0000 012 344454443
Q ss_pred cc------cccCCCCEEEEecccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecCcccc
Q 013467 174 VE------PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235 (442)
Q Consensus 174 ~~------~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~~vy~ 235 (442)
.+ ..+.++|+||.+. .|......+-+.|.+.++.||++.+.+.||
T Consensus 105 ~~~~~~~~~~~~~~dvVv~~~-----------------~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G 155 (529)
T d1yova1 105 ENLLDNDPSFFCRFTVVVATQ-----------------LPESTSLRLADVLWNSQIPLLICRTYGLVG 155 (529)
T ss_dssp HHHHHSCGGGGGGCSEEEEES-----------------CCHHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred hhhhhhHHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 22 3456789999764 234444567889999999999999888776
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.29 E-value=0.032 Score=42.38 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+++++|.| .|++|-.++..|.+.|.+|+++.+.
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~ 53 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEAR 53 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeee
Confidence 35899999 4999999999999999999999774
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.10 E-value=0.04 Score=45.62 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
..+++|.|.| .|-||+.+++.|..-|.+|++.+|....... ...+-.++.+..+|+|+.+..
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~-------------~~~~~l~ell~~sDiv~~~~p 101 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPW-------------RFTNSLEEALREARAAVCALP 101 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSS-------------CCBSCSHHHHTTCSEEEECCC
T ss_pred ccCceEEEec-cccccccceeeeeccccccccccccccccce-------------eeeechhhhhhccchhhcccc
Confidence 5678999999 6999999999999999999999875322111 012335678889999997664
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.02 E-value=0.012 Score=47.82 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=49.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEe--ccccccccCCCCEEEEeccc
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIR--HDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~--~D~~~~~~~~~d~Vih~A~~ 190 (442)
+.+|+|.|+ |-.|.+-++.....|.+|+++|.+.... +.+...+ ...++... .+...+.+.++|+||.++-.
T Consensus 32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l-~~l~~~~-~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLF-GSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHH-GGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHH-HHHHHhh-cccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 448999995 9999999999999999999999853322 1121111 12233333 23345677789999998864
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.99 E-value=0.04 Score=42.38 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+++++|.|| |+||-.++..|.+.|.+|+++.|+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 347999995 999999999999999999999864
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.052 Score=41.65 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+++++|.|| |++|..++..|.+.|.+|+++.+.
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~ 55 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQ 55 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEec
Confidence 458999994 999999999999999999999874
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.038 Score=46.21 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=31.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
-++|.|.|| |.+|+.++..++..|++|++.+++..
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 358999996 99999999999999999999998653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.87 E-value=0.0051 Score=51.57 Aligned_cols=72 Identities=21% Similarity=0.117 Sum_probs=41.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEE-EeCCCCCCccccccccCCC-ceeEEecccccc----ccCCCCEEEEecc
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIV-VDNFFTGRKENVMHHFGNP-NFELIRHDVVEP----LLLEVDQIYHLAC 189 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~-l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~----~~~~~d~Vih~A~ 189 (442)
.+|||+||+|.+|+..++-....|.++++ .+.+ ..+...+...+... -+++.+.|..+. .-.++|+||.+.|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 37999999999999999988778976554 4432 22222222222211 111111222211 2246999998875
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.86 E-value=0.041 Score=47.39 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=30.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.++|+|.|| |..|...+.+|.++|++|+++.|.
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence 458999995 999999999999999999999875
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.17 Score=43.70 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
.+..+|+|.| .|.+|++++..|.+.|. +++++|.+
T Consensus 28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 4455899999 58899999999999997 78888754
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.79 E-value=0.032 Score=45.11 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=44.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|+|.|.| .|.+|+.+++.|++.|++|++.+|+..... .+.. ... ...+-..+.+.++|+||-+-
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~-~~~~----~~~--~~~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIA-DVIA----AGA--ETASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHH----TTC--EECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhH-HHHH----hhh--hhcccHHHHHhCCCeEEEEc
Confidence 6899998 799999999999999999999988533211 1111 111 12333445667799999764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.78 E-value=0.066 Score=40.82 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
.+++++|.| .|+||-.++..|.+.|.+|+++.+..
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeec
Confidence 346899999 49999999999999999999998754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.73 E-value=0.021 Score=45.66 Aligned_cols=41 Identities=29% Similarity=0.461 Sum_probs=34.8
Q ss_pred CcCCcCCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeC
Q 013467 107 KIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN 148 (442)
Q Consensus 107 ~~~~~~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r 148 (442)
.+|.....++++|+|+|| |.+|..-++.|++.|.+|+++.-
T Consensus 4 ~lpl~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 4 SLQLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred cchhheeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 344555677889999997 99999999999999999999853
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.69 E-value=0.04 Score=42.26 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=29.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
++++|.|| |++|-.++..|.+.|.+|+++.|..
T Consensus 33 ~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence 47999995 9999999999999999999998753
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.63 E-value=0.016 Score=47.94 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCcccccccc----CCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF----GNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.++++|+|.| +|+.++.++..|.+.| +|+++.|+.... +.+...+ .......+..+-.+......|+|||+-.
T Consensus 16 ~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp 92 (177)
T d1nvta1 16 VKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKA-EALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 92 (177)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHH-HHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHH-HHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence 4567999999 5889999999997766 899998853322 2221111 1111122233334445567899999865
Q ss_pred c
Q 013467 190 P 190 (442)
Q Consensus 190 ~ 190 (442)
.
T Consensus 93 ~ 93 (177)
T d1nvta1 93 I 93 (177)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.51 E-value=0.57 Score=35.14 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=50.8
Q ss_pred CEEEEEcCC---chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCCC
Q 013467 117 LRIVVTGGA---GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASP 193 (442)
Q Consensus 117 ~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~~ 193 (442)
|+|.|.|++ +-.|..+++.|++.|++|+.+.. +.+... ++..+ .++. +.-..+|.++-+.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP----~~~~i~------G~~~y-~sl~-~lp~~~D~vvi~v----- 64 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP----NYDEIE------GLKCY-RSVR-ELPKDVDVIVFVV----- 64 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT----TCSEET------TEECB-SSGG-GSCTTCCEEEECS-----
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcc----cccccc------Ccccc-ccch-hccccceEEEEEe-----
Confidence 479999988 77999999999999999888742 111111 11111 1111 1223578877543
Q ss_pred CcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEE
Q 013467 194 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227 (442)
Q Consensus 194 ~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~ 227 (442)
.-..+..+++.|.+.|++.+.
T Consensus 65 -------------p~~~~~~~l~~~~~~g~k~v~ 85 (116)
T d1y81a1 65 -------------PPKVGLQVAKEAVEAGFKKLW 85 (116)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCEEE
T ss_pred -------------CHHHHHHHHHHHHhcCCceEE
Confidence 233455678888888985443
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.26 E-value=0.049 Score=41.84 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++++|.|| |++|-.++..|.+.|.+|+++.|..
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence 458999995 9999999999999999999998754
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.17 E-value=0.057 Score=45.05 Aligned_cols=31 Identities=35% Similarity=0.579 Sum_probs=26.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|+|.|.| .||+|..++..| ++|++|+++|.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDIL 31 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSC
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECC
Confidence 6899997 799999998755 679999999865
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.06 E-value=0.067 Score=41.21 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++++|.|| |+||..++..|.+.|.+|+++.+..
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 458999995 9999999999999999999998754
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.95 E-value=0.04 Score=45.24 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
|+|.|.| .|.+|..++++|++.||+|++.+|..
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 5799998 89999999999999999999998854
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.94 E-value=0.077 Score=41.30 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=30.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++|+|.| .|++|-.++..|.+.|.+|+++.+..
T Consensus 35 ~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 35 DNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhhCcceeeeeecc
Confidence 45899999 59999999999999999999998753
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=92.90 E-value=0.12 Score=38.52 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
...+|+|+|.| +|--|..++.+|.+.+-+|+...|+..
T Consensus 29 ~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 29 LFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp GGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred hcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 44677999999 589999999999988777766666543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.89 E-value=0.016 Score=47.98 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=29.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~ 150 (442)
+.+|+|+|+ |.+|...+..+...|. +|++++++.
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCEEEEECC-Cccchhheeccccccccccccccccc
Confidence 348999996 9999999999988997 799998753
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.065 Score=44.22 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccc--ccccc---CCCceeEEeccc---cccccCCCCEE
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKEN--VMHHF---GNPNFELIRHDV---VEPLLLEVDQI 184 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~--~~~~~---~~~~v~~~~~D~---~~~~~~~~d~V 184 (442)
.++++|+|.|+ |+.|+.++..|.+.|. ++++..|........ +.+.+ ....+...+..- ....+..+|+|
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 34569999995 8999999999999986 788888864332211 11111 111222222211 12235679999
Q ss_pred EEeccc
Q 013467 185 YHLACP 190 (442)
Q Consensus 185 ih~A~~ 190 (442)
||+...
T Consensus 95 IN~Tp~ 100 (182)
T d1vi2a1 95 TNGTKV 100 (182)
T ss_dssp EECSST
T ss_pred ccccCC
Confidence 999753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.43 E-value=0.044 Score=45.65 Aligned_cols=36 Identities=25% Similarity=0.095 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+.|+||.|.| +|-.|..++..|.+.||+|++.+|+.
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 4566899999 59999999999999999999998853
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=0.15 Score=41.84 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
....+++|+|.| .|.-|-..+..|.++||+|+++.+.
T Consensus 39 ~~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~ 75 (179)
T d1ps9a3 39 PAVQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAH 75 (179)
T ss_dssp SCSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEecc
Confidence 344567999999 4999999999999999999999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.22 E-value=0.022 Score=46.55 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=28.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
.+|+|+|++|.+|...+..+...|. .|++.+++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~ 62 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR 62 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEEeccccceeeeeecccccccccccccccc
Confidence 4899999999999999998888884 88888764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=92.16 E-value=0.16 Score=40.70 Aligned_cols=96 Identities=11% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh-CC-CeEEEEe-CCCCCCccccccccCCCceeEEeccc----cccccCCCCEEEEec
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIA-RG-DSVIVVD-NFFTGRKENVMHHFGNPNFELIRHDV----VEPLLLEVDQIYHLA 188 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~-~g-~~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~D~----~~~~~~~~d~Vih~A 188 (442)
.+||.|.| +|.+|+.+...+++ .. .+++.+. |+.........+. .++.+....+ ....+.++|+||.+.
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~---~~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR---MGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH---TTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhh---cCCcccccceeeeeecccccccCEEEEcC
Confidence 45899999 89999976555554 33 3677664 4333222111111 1233332211 122355789999753
Q ss_pred ccCCCCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEeecC
Q 013467 189 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231 (442)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~iSS~ 231 (442)
. .........+-.+.++|+.+|-.|+.
T Consensus 80 p----------------ag~h~~~~~~~~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 80 S----------------ASAHVQNEALLRQAKPGIRLIDLTPA 106 (157)
T ss_dssp C----------------HHHHHHHHHHHHHHCTTCEEEECSTT
T ss_pred C----------------chhHHHhHHHHHHHHcCCEEEEcccc
Confidence 1 00111112233334668888888874
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.12 E-value=0.74 Score=35.71 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=53.1
Q ss_pred CCEEEEEcCC---chhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecccCC
Q 013467 116 GLRIVVTGGA---GFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPAS 192 (442)
Q Consensus 116 ~~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~~~ 192 (442)
+++|.|.|++ +-.|..+++.|.+.|++|+.+.- +..... +.. +..++.+ .-..+|.|+-+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP----~~~~i~------G~~-~~~sl~d-lp~~iD~v~i~v---- 82 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP----KYEEVL------GRK-CYPSVLD-IPDKIEVVDLFV---- 82 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT----TCSEET------TEE-CBSSGGG-CSSCCSEEEECS----
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECC----cccccC------CCc-ccccccc-cCccceEEEEEe----
Confidence 4589999998 78999999999999999988742 111111 111 1112222 223578877543
Q ss_pred CCcccCChhHHHHHhHHHHHHHHHHHHHcCCeEEEe
Q 013467 193 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228 (442)
Q Consensus 193 ~~~~~~~~~~~~~~nv~gt~~ll~~a~~~g~r~i~i 228 (442)
+-..+..+++.|.+.|++.+.+
T Consensus 83 --------------p~~~~~~~~~e~~~~g~k~v~~ 104 (139)
T d2d59a1 83 --------------KPKLTMEYVEQAIKKGAKVVWF 104 (139)
T ss_dssp --------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred --------------CHHHHHHHHHHHHHhCCCEEEE
Confidence 2334557888888889865544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.23 Score=40.95 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
...+++|.|.| .|.||+.+++.|..-|.+|++.++....... .....+-.++.+..+|+|+.+...
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~ell~~sDii~i~~pl 106 (188)
T d1sc6a1 41 EARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG-----------NATQVQHLSDLLNMSDVVSLHVPE 106 (188)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT-----------TCEECSCHHHHHHHCSEEEECCCS
T ss_pred cccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh-----------hhhhhhhHHHHHhhccceeecccC
Confidence 45677999998 8999999999999999999999874321111 112223455667779998877654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.92 E-value=0.079 Score=43.61 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~ 150 (442)
++||+|.|| |..|-..+..|.++|+ +|+++.|..
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 458999995 9999999999999998 599998753
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=91.86 E-value=0.14 Score=42.68 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=47.4
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
....+++|.|.| .|-||+.+++.|..-|.+|++.++......... ..+...+-.++.+..+|+|+.+..
T Consensus 45 ~eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~--------~~~~~~~~l~~ll~~sD~i~~~~p 113 (193)
T d1mx3a1 45 ARIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA--------LGLQRVSTLQDLLFHSDCVTLHCG 113 (193)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH--------HTCEECSSHHHHHHHCSEEEECCC
T ss_pred eeeeCceEEEec-cccccccceeeeeccccceeeccCcccccchhh--------hccccccchhhccccCCEEEEeec
Confidence 446778999999 799999999999999999999987533221111 112233334556667888776654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=91.85 E-value=0.073 Score=46.46 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=28.2
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|+|.|| |..|..++.+|.++|.+|+++++.
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESG 36 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999995 999999999999999999999874
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.45 Score=44.55 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
+.+||||.|+ |.||.++++.|+..|. +++++|..
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3458999997 7799999999999997 88888864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.78 E-value=0.02 Score=47.10 Aligned_cols=68 Identities=25% Similarity=0.253 Sum_probs=39.7
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEE-EEeCCCCCCccccccccCCCceeEEec---cccccc--c--CCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVI-VVDNFFTGRKENVMHHFGNPNFELIRH---DVVEPL--L--LEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~-~l~r~~~~~~~~~~~~~~~~~v~~~~~---D~~~~~--~--~~~d~Vih~A 188 (442)
.+|+|.|+ |.+|...+..+...|.+++ +.+++ +.+.+... .+.. .++++. |..+.. + .++|+||.+.
T Consensus 30 ~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~-~~k~~~a~-~~Ga--~~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 30 SSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV-ESRLELAK-QLGA--THVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC-HHHHHHHH-HHTC--SEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CEEEEeCC-CHHHhhhhhcccccccceeeeeccH-HHHHHHHH-HcCC--eEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 48999997 9999999988888887554 55543 22222222 2221 123332 222211 1 2589999988
Q ss_pred c
Q 013467 189 C 189 (442)
Q Consensus 189 ~ 189 (442)
|
T Consensus 105 G 105 (174)
T d1f8fa2 105 G 105 (174)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.78 E-value=0.38 Score=35.87 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
.||.|.| .|.||+-++....+.|++|++++....
T Consensus 12 ~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4899999 599999999999999999999987543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.17 Score=40.85 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN 148 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r 148 (442)
...+++|+|.|-+..+|+-++..|.++|..|++...
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 346779999999999999999999999999988754
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=91.48 E-value=0.75 Score=35.52 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=28.0
Q ss_pred CCEEEEEcCC---chhHHHHHHHHHhCCCeEEEEe
Q 013467 116 GLRIVVTGGA---GFVGSHLVDRLIARGDSVIVVD 147 (442)
Q Consensus 116 ~~~vlVtGat---G~lG~~lv~~Ll~~g~~V~~l~ 147 (442)
+++|.|.||+ +-.|..+++.|.+.|+.++.+.
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~ 47 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN 47 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEE
Confidence 4589999998 5689999999999999998874
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=91.43 E-value=0.1 Score=43.74 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.++++|+|.| -|-+|+++++.|.+.|.+|++.+.+. ...... .....+.+ +..+-...+||+++=||-
T Consensus 25 L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~----~~~~~~-~~~g~~~~--~~~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 25 LDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDT----ERVAHA-VALGHTAV--ALEDVLSTPCDVFAPCAM 92 (201)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH----HHHHHH-HHTTCEEC--CGGGGGGCCCSEEEECSC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchH----HHHHHH-Hhhccccc--Cccccccccceeeecccc
Confidence 5667999999 79999999999999999999887532 111111 11122222 222334557999998774
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.083 Score=42.56 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
..+|+|+|.| .|.+|+-+++.|...|.+|++.+..+-. .+..... .+... ..++++...|+||-+.|.
T Consensus 22 l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~---al~A~~d--G~~v~---~~~~a~~~adivvtaTGn 89 (163)
T d1li4a1 22 IAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPIN---ALQAAME--GYEVT---TMDEACQEGNIFVTTTGC 89 (163)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHT--TCEEC---CHHHHTTTCSEEEECSSC
T ss_pred ecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccch---hHHhhcC--ceEee---ehhhhhhhccEEEecCCC
Confidence 4567999999 9999999999999999999999874321 1111111 12221 345567778998887763
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.39 E-value=0.15 Score=38.50 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+++|+|.| .|++|..++..|.+.|.+|.++.|..
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccc
Confidence 45899999 59999999999999999999998854
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.11 Score=42.04 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
.+|+|+|+ |.+|...+..+...|. +|++.++.
T Consensus 28 d~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 28 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CEEEEECC-CccHHHHHHHHHHcCCceEEeccCC
Confidence 37999986 9999999999988998 79998875
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.11 E-value=0.15 Score=43.97 Aligned_cols=33 Identities=30% Similarity=0.228 Sum_probs=29.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+||+|.|| |.-|..++..|.++|++|+++.|..
T Consensus 5 ~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 5 DRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 48999995 9999999999999999999998743
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.82 E-value=0.081 Score=43.82 Aligned_cols=37 Identities=16% Similarity=-0.019 Sum_probs=30.3
Q ss_pred EEEE-EcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCc
Q 013467 118 RIVV-TGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK 154 (442)
Q Consensus 118 ~vlV-tGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~ 154 (442)
+|+| +||+|.+|...+.-....|.+|++++|.....+
T Consensus 31 ~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~ 68 (189)
T d1gu7a2 31 DWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68 (189)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred EEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence 5666 599999999999888888999999988655443
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.77 E-value=0.11 Score=41.28 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=43.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
|||.+.| .|-+|+.+++.|++.|++|++.+|+.+. .+.+...+ ++.+. .-.++.+.++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~-~~~l~~~~---g~~~~--~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLER-SKEIAEQL---ALPYA--MSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHH-HHHHHHHH---TCCBC--SSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHh-HHhhcccc---ceeee--chhhhhhhccceeeeec
Confidence 6899998 7999999999999999999998875322 22222211 11111 12334566899888653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.70 E-value=0.13 Score=41.28 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=29.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC--eEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD--SVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~--~V~~l~r~~ 150 (442)
+|||+|.|| |+.|-.++..|.+.++ +|+++.+..
T Consensus 2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 579999995 9999999999999885 788887653
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=90.65 E-value=0.12 Score=43.08 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|.|.| .|-||+.+++.|..-|.+|++.++.... .... .. +..+-.++.+..+|+|+.+..
T Consensus 40 el~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~--~~~~-----~~---~~~~~l~~~l~~sDii~~~~p 105 (197)
T d1j4aa1 40 EVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNP--ELEK-----KG---YYVDSLDDLYKQADVISLHVP 105 (197)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHH-----TT---CBCSCHHHHHHHCSEEEECSC
T ss_pred cccCCeEEEec-ccccchhHHHhHhhhcccccccCccccc--cccc-----ce---eeeccccccccccccccccCC
Confidence 35678999999 8999999999999999999998764221 1110 01 122334556777898887654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.11 Score=36.26 Aligned_cols=33 Identities=24% Similarity=0.116 Sum_probs=29.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+|+|.|.| +|.||+-++..-.+.|++|++++-.
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46899999 5999999999999999999999753
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.15 E-value=0.18 Score=45.36 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=30.0
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+|+|+|.| +|.-|...+..|.+.|++|.++.++
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~ 34 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQR 34 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECC
Confidence 57999999 5999999999999999999999764
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.06 E-value=0.28 Score=40.40 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|.|.| .|-||+.+++.|..-|.+|+..++......... ...+...+..++.+..+|+|+.+..
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-------~~~~~~~~~l~~~l~~sD~v~~~~p 109 (188)
T d2naca1 41 DLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-------ELNLTWHATREDMYPVCDVVTLNCP 109 (188)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-------HHTCEECSSHHHHGGGCSEEEECSC
T ss_pred eccccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccc-------cccccccCCHHHHHHhccchhhccc
Confidence 45677999999 799999999999988999999987532221111 1112233344556777888876554
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=90.01 E-value=0.14 Score=40.65 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhC--CCeEEEEeC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDN 148 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~--g~~V~~l~r 148 (442)
+|++|.|.|+||-||....+-+.+. .++|+++.-
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 3579999999999999999988775 367777753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.89 E-value=0.11 Score=42.11 Aligned_cols=32 Identities=31% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDN 148 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r 148 (442)
+.+|+|.|+ |.+|...+..+...|. .|++.++
T Consensus 29 G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~ 61 (176)
T d2fzwa2 29 GSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDI 61 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS
T ss_pred CCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcc
Confidence 348999997 6789999988888896 5655554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.86 E-value=0.3 Score=41.50 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
...++|+|.|| |.-|-..+.+|.++|++|+++.+.
T Consensus 47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~ 81 (233)
T d1djqa3 47 KNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTA 81 (233)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeec
Confidence 45679999995 999999999999999999999764
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.82 E-value=0.13 Score=41.88 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeC
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN 148 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r 148 (442)
...++|+|+|.|-+.-+|+-++..|+++|..|+....
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~ 61 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDV 61 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecc
Confidence 3567789999999999999999999999999987754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.77 E-value=0.13 Score=42.14 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=29.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFT 151 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~ 151 (442)
+.+|+|+|+ |.+|...+..+...|. +|++++++.+
T Consensus 30 g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 30 GSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHH
Confidence 347999985 9999999999999995 8999987543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.76 E-value=0.18 Score=40.93 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=59.9
Q ss_pred CEEEEEcC-CchhHHHHHHHHHhCC----CeEEEEeCCCCCCccccccc-----c--CCCceeEEeccccccccCCCCEE
Q 013467 117 LRIVVTGG-AGFVGSHLVDRLIARG----DSVIVVDNFFTGRKENVMHH-----F--GNPNFELIRHDVVEPLLLEVDQI 184 (442)
Q Consensus 117 ~~vlVtGa-tG~lG~~lv~~Ll~~g----~~V~~l~r~~~~~~~~~~~~-----~--~~~~v~~~~~D~~~~~~~~~d~V 184 (442)
|||.|.|| +.+.+..++..+.... .++..+|.+........... + ....+.+....-..+++.++|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 58999996 3345555555555432 38888876432111111110 0 12233443333334567899999
Q ss_pred EEecccCCCCcccCC------------------hhHHHHHhHHHHHHHHHHHHHcCC--eEEEee
Q 013467 185 YHLACPASPVHYKFN------------------PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 229 (442)
Q Consensus 185 ih~A~~~~~~~~~~~------------------~~~~~~~nv~gt~~ll~~a~~~g~--r~i~iS 229 (442)
|++|+......+..+ ......-|+...+.+++..++... .++.+|
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 999985432111100 011223567777788888888775 455544
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=89.76 E-value=0.2 Score=41.52 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=47.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
....++++.|.| .|-||+.+++.|..-|.+|++.++......... .......+-.++.+..+|+|+.+..
T Consensus 43 ~~l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-------~~~~~~~~~l~~ll~~sD~v~l~~p 112 (191)
T d1gdha1 43 EKLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-------SYQATFHDSLDSLLSVSQFFSLNAP 112 (191)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-------HHTCEECSSHHHHHHHCSEEEECCC
T ss_pred ceecccceEEee-cccchHHHHHHHHhhccccccccccccccchhh-------cccccccCCHHHHHhhCCeEEecCC
Confidence 345678999999 799999999999999999999986433222111 1112233445566777888876554
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.59 E-value=0.28 Score=40.10 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFT 151 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~ 151 (442)
+|+|.|| |-.|.+-++.....|..|.++|.+..
T Consensus 31 ~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 31 RVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred EEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 8999995 99999999999999999999998654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=89.33 E-value=0.18 Score=39.97 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDN 148 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r 148 (442)
|++|.|.|+||-||...++-+.+.. ++|+++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 5689999999999999999887763 57887753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.29 E-value=0.21 Score=40.49 Aligned_cols=34 Identities=32% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~ 150 (442)
+.+|+|.|+ |.+|...+..+...|. +|++++++.
T Consensus 29 GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 29 GSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcH
Confidence 348999998 6799999999999984 888887653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.38 Score=38.80 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
...+++|+|.|-+..+|+-++..|+++|..|++....
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 3567799999999999999999999999999998653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.20 E-value=0.15 Score=41.60 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=41.8
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCCCCCccccccccCCCceeEEecccccc---------ccCCCCEEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP---------LLLEVDQIYH 186 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---------~~~~~d~Vih 186 (442)
.+|+|+|+ |.||...+..+...|. .|++.+++.. +.+ ....+... ++++....+. .-.++|+||.
T Consensus 30 ~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-r~~-~a~~~Ga~--~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 30 STCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE-KFP-KAKALGAT--DCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-GHH-HHHHTTCS--EEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH-HHH-HHHHhCCC--cccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 48999985 9999999999999997 5777766432 222 22222221 2222211111 1246999999
Q ss_pred ecc
Q 013467 187 LAC 189 (442)
Q Consensus 187 ~A~ 189 (442)
+.|
T Consensus 105 ~~G 107 (174)
T d1e3ia2 105 CAG 107 (174)
T ss_dssp SSC
T ss_pred ecc
Confidence 987
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=89.11 E-value=0.23 Score=43.90 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.+++|+|+| +|.-|-..+.+|.++|++|+++.+.
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456999999 5999999999999999999999753
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=89.10 E-value=0.23 Score=42.41 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 114 ~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
.++++|+|-| -|-+|+++++.|.+.|.+|++.+.+. ..............+ +..+....+||+++=||-
T Consensus 37 l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~----~~~~~~~~~~g~~~~--~~~~~~~~~cDIl~PcA~ 105 (230)
T d1leha1 37 LEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNK----AAVSAAVAEEGADAV--APNAIYGVTCDIFAPCAL 105 (230)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH----HHHHHHHHHHCCEEC--CGGGTTTCCCSEEEECSC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccH----HHHHHHHHhcCCccc--CCcccccccccEeccccc
Confidence 4567999999 79999999999999999999886532 111111111122222 223334557999999985
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=89.10 E-value=0.15 Score=42.57 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=45.8
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
...+++|.|.| .|-||+.+++.|..-|.+|++.++....... ..+++. -.++.+..+|+|+.+..
T Consensus 42 ~l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--------~~~~~~---~l~~l~~~~D~v~~~~p 106 (199)
T d1dxya1 42 ELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH--------PDFDYV---SLEDLFKQSDVIDLHVP 106 (199)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC--------TTCEEC---CHHHHHHHCSEEEECCC
T ss_pred cccceeeeeee-cccccccccccccccceeeeccCCccchhhh--------cchhHH---HHHHHHHhcccceeeec
Confidence 34567999999 7999999999999999999999874322111 122222 24456677899887653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.43 E-value=0.21 Score=43.41 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=29.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|+|+|+|| |.-|...+.+|.++|++|+++.+.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecC
Confidence 58999996 999999999999999999999653
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.19 E-value=0.3 Score=40.13 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=45.7
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEecc
Q 013467 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLAC 189 (442)
Q Consensus 112 ~~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~ 189 (442)
....++++.|.| .|.||+.+++.|..-|.+|++.++........ . ..+.+ .-.++.+..+|+|+.+..
T Consensus 40 ~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~----~~~~~---~~l~ell~~sDiv~~~~P 107 (184)
T d1ygya1 40 TEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--Q----LGIEL---LSLDDLLARADFISVHLP 107 (184)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--H----HTCEE---CCHHHHHHHCSEEEECCC
T ss_pred ccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHh--h----cCcee---ccHHHHHhhCCEEEEcCC
Confidence 345677999999 69999999999998899999998743211111 0 11122 123556777898886654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.16 E-value=0.27 Score=42.64 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+|||+|.| .|.-|-..+.+|.++|++|+++.+.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 36899999 4999999999999999999999753
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.09 E-value=0.36 Score=41.54 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r~~ 150 (442)
+++|+|+|| |.-|..++..|.+.| ++|.++.|..
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 468999995 999999999999999 5899998754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.75 E-value=0.52 Score=35.87 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=44.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEecccccc------ccCCCCEEEEec
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP------LLLEVDQIYHLA 188 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 188 (442)
.|+|.| -|-+|+.+++.| +|+.|++++..... .+ .....++.++.+|..++ .+.+++.+|-+.
T Consensus 2 HivI~G-~g~~g~~l~~~L--~~~~i~vi~~d~~~-~~----~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 2 HVVICG-WSESTLECLREL--RGSEVFVLAEDENV-RK----KVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CEEEES-CCHHHHHHHHTS--CGGGEEEEESCTTH-HH----HHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred EEEEEC-CCHHHHHHHHHH--cCCCCEEEEcchHH-HH----HHHhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 588998 588999999998 46678888764322 11 11234778899998775 345688888654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.71 E-value=0.26 Score=42.85 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=27.9
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|+|.|| |..|..++.+|.++|++|+++.+.
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 899994 999999999999999999999874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.56 E-value=0.044 Score=46.78 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.6
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEE
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIV 145 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~ 145 (442)
|||+|.|| |.+|..++.+|+++|++|++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceE
Confidence 68999995 99999999999999986543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.51 E-value=0.44 Score=38.00 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=28.4
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+.+|+|.|+ |.+|...+..+...|.+|++++++
T Consensus 28 g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 28 GQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 348999986 999999998888889999999874
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.39 E-value=0.42 Score=35.84 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=26.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh---CCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIA---RGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~---~g~~V~~l~r~ 149 (442)
+++++|.|| |++|-.++..|.+ +|.+|+++.|.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~ 55 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRG 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEecc
Confidence 458999996 9999999976654 45689999774
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.38 E-value=0.064 Score=43.93 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=27.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
.+|+|.|+ |.+|...+..+...|. +|++++++
T Consensus 29 ~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 29 SSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp CCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CEEEEEcC-Ccchhhhhhhhhcccccccccccch
Confidence 37999986 9999999988888896 78888864
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.28 E-value=0.23 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.255 Sum_probs=27.9
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
+.+|+|+|+ |.+|...+..+...|. +|++.+++
T Consensus 28 G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~ 61 (174)
T d1p0fa2 28 GSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTH 61 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCceeeccCCh
Confidence 348999996 9999999999998886 78888774
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.22 E-value=0.2 Score=43.95 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=29.1
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
+|+|.|| |..|..++..|.+.|++|+++.+..
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5999996 8999999999999999999998753
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=86.77 E-value=0.55 Score=35.04 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCEEEEEcCCchhHHHHHHHHHh---CCCeEEEEeCCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIA---RGDSVIVVDNFF 150 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~---~g~~V~~l~r~~ 150 (442)
+++++|.|| |++|-.++..|.+ .|.+|+++.|..
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence 458999995 9999999976654 488999998753
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=86.34 E-value=0.3 Score=43.01 Aligned_cols=32 Identities=44% Similarity=0.729 Sum_probs=28.4
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF 150 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~~ 150 (442)
+|+|.|| |.+|..++.+|.++|. +|++++|..
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5999995 9999999999999995 799998853
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=86.24 E-value=0.29 Score=39.51 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=40.7
Q ss_pred CEEEEEcCCchhHHH-HHHHHHhC-----CCeEEEEeCCCCCCc--cccccc---cCCCceeEEeccccccccCCCCEEE
Q 013467 117 LRIVVTGGAGFVGSH-LVDRLIAR-----GDSVIVVDNFFTGRK--ENVMHH---FGNPNFELIRHDVVEPLLLEVDQIY 185 (442)
Q Consensus 117 ~~vlVtGatG~lG~~-lv~~Ll~~-----g~~V~~l~r~~~~~~--~~~~~~---~~~~~v~~~~~D~~~~~~~~~d~Vi 185 (442)
.||.|.|| |.+|.. ++..|+.+ +.+|+.+|.+.+..+ ...... .......+....-..+++.++|+||
T Consensus 4 ~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 4 FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp EEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred ceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 47999998 445543 44555543 138889887533211 011110 0112333433333445788999999
Q ss_pred EecccC
Q 013467 186 HLACPA 191 (442)
Q Consensus 186 h~A~~~ 191 (442)
.+++..
T Consensus 83 itag~~ 88 (167)
T d1u8xx1 83 AHIRVG 88 (167)
T ss_dssp ECCCTT
T ss_pred ECCCcC
Confidence 999863
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.08 E-value=0.63 Score=37.83 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCC-CeEEEEeC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~r 148 (442)
|-||.|-| .|.||+.+++.|.+++ .+|+.+.-
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 44899999 8999999999999886 58877754
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.05 E-value=0.38 Score=39.55 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=28.0
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~ 150 (442)
|||+|.|| |++|-.++..|.+.+ .+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999995 999999999998874 5888888753
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=85.86 E-value=0.28 Score=39.21 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEeccc
Q 013467 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACP 190 (442)
Q Consensus 113 ~~~~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A~~ 190 (442)
...+|+++|.| -|.+|+-++..|...|.+|++...++-...+... ..+++.. .++++...|++|-+-|.
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~m-----dGf~v~~---~~~a~~~aDi~vTaTGn 88 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVM-----EGFNVVT---LDEIVDKGDFFITCTGN 88 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT-----TTCEECC---HHHHTTTCSEEEECCSS
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHHh-----cCCccCc---hhHccccCcEEEEcCCC
Confidence 34567899999 8999999999999999999999764322111111 2223222 34567778999887764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.59 E-value=0.57 Score=37.57 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=27.8
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
+++|+|.| .|++|-.++..|.+.|.+|.++.+.
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEec
Confidence 45899999 5999999999999999877666554
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.46 E-value=0.61 Score=36.67 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=27.2
Q ss_pred EEEEE-cCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 118 RIVVT-GGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 118 ~vlVt-GatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
.++|. .+.||+|..++..|.++|++|+++.+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~ 73 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGV 73 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Confidence 56665 356999999999999999999999874
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.56 E-value=0.59 Score=41.85 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCchhHHHHHHHHHhCC--CeEEEEeCCC
Q 013467 115 KGLRIVVTGGAGFVGSHLVDRLIARG--DSVIVVDNFF 150 (442)
Q Consensus 115 ~~~~vlVtGatG~lG~~lv~~Ll~~g--~~V~~l~r~~ 150 (442)
.+|+|+|.|| |.-|-..+..|+++| ++|+++.|..
T Consensus 3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 4678999995 999999999999886 5999998753
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.49 E-value=0.46 Score=39.61 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=28.0
Q ss_pred EEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 119 vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|+|.| +|.-|...+..|.++|++|.++.+.
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~ 37 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQ 37 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCC
Confidence 89999 6999999999999999999999775
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.37 E-value=0.19 Score=40.73 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.3
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
.+|+|.|+ |.+|...+..+...|. .|++.+++
T Consensus 34 ~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~ 66 (172)
T d1h2ba2 34 AYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK 66 (172)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CEEEEeCC-ChHHHHHHHHHHhhcCcccccccch
Confidence 47999985 9999999988877785 66666654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.49 E-value=1.3 Score=35.69 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=24.9
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCC-CeEEEEe
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVD 147 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g-~~V~~l~ 147 (442)
+||.|-| -|-||+.+++.|.++. .+|+.+.
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEe
Confidence 5899999 6999999999998875 4666664
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.31 E-value=0.63 Score=36.76 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=26.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFF 150 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~~ 150 (442)
||+|.|| |++|-.++..|. ++.+|+++.+..
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 7999995 999999999884 578999998743
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=82.60 E-value=2.3 Score=32.02 Aligned_cols=91 Identities=11% Similarity=-0.021 Sum_probs=54.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccC-CCCEEEEecccCCCCc
Q 013467 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLL-EVDQIYHLACPASPVH 195 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~Vih~A~~~~~~~ 195 (442)
+|+|.| +|.+|+.+++++... |++++++.-..+...... -.++.+...|....... .+++.+-+..
T Consensus 5 ~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~-----I~Gi~V~~~~~l~~~~~~~i~iai~~i~------ 72 (126)
T d2dt5a2 5 GLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRP-----VRGGVIEHVDLLPQRVPGRIEIALLTVP------ 72 (126)
T ss_dssp EEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE-----ETTEEEEEGGGHHHHSTTTCCEEEECSC------
T ss_pred eEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE-----ECCEEEecHHHHHHHHhhcccEEEEeCC------
Confidence 799999 599999999987543 678887754322222111 13455666555444333 3555554331
Q ss_pred ccCChhHHHHHhHHHHHHHHHHHHHcCC-eEEEeecCc
Q 013467 196 YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 232 (442)
Q Consensus 196 ~~~~~~~~~~~nv~gt~~ll~~a~~~g~-r~i~iSS~~ 232 (442)
-...+.+++.|.+.|+ .+..++...
T Consensus 73 ------------~~~~~~I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 73 ------------REAAQKAADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp ------------HHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred ------------HHHHHHHHHHHHHcCCCEEeecCcee
Confidence 1233568888888898 466665543
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=82.46 E-value=2.3 Score=33.11 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.3
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
||.+.| .|.+|..+++.|++.|+.| +.+|.
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~ 31 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRT 31 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCC
Confidence 588999 6999999999999999866 45554
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=0.47 Score=41.93 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=29.2
Q ss_pred CCEEEEEcCCchhHHHHHHHHHhCCCeEEEEeCC
Q 013467 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF 149 (442)
Q Consensus 116 ~~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r~ 149 (442)
|..|+|.| +|.-|..++.+|.+.|++|.++.++
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEKR 33 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECC
Confidence 34699999 4999999999999999999999764
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=81.38 E-value=1.6 Score=34.36 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=37.5
Q ss_pred CEEEEEcCCchhHHH-HHHHHHhC-CCeEEEEeCCCCCCccccccccCCCceeEEeccccccccCCCCEEEEec
Q 013467 117 LRIVVTGGAGFVGSH-LVDRLIAR-GDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLA 188 (442)
Q Consensus 117 ~~vlVtGatG~lG~~-lv~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 188 (442)
++|.|.| +|.+|+. .+..|.+. +.+|++++-....+........ ++.+ .|-.+....++|+|+-+.
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~~--~~~~~~l~~~~D~V~I~t 69 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW---RIPY--ADSLSSLAASCDAVFVHS 69 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH---TCCB--CSSHHHHHTTCSEEEECS
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc---cccc--cccchhhhhhcccccccc
Confidence 4899999 6999975 45556554 5677766543333332222222 2222 233344456799988653
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.08 E-value=0.93 Score=34.82 Aligned_cols=33 Identities=36% Similarity=0.414 Sum_probs=27.2
Q ss_pred CEEEEEcCCchhHHHHHHHHHh----CCCeEEEEeCCC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIA----RGDSVIVVDNFF 150 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~----~g~~V~~l~r~~ 150 (442)
++++|.|| ||+|-.++..|.+ .|.+|+++.+..
T Consensus 38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 38 KSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 48999995 9999999998863 588999997743
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.65 E-value=0.98 Score=39.46 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=28.1
Q ss_pred CEEEEEcCCchhHHHHHHHHHhCCCeEEEEeC
Q 013467 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN 148 (442)
Q Consensus 117 ~~vlVtGatG~lG~~lv~~Ll~~g~~V~~l~r 148 (442)
.||+|+|| |.=|-..+.+|.++|++|+++-.
T Consensus 6 ~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa 36 (449)
T d2dw4a2 6 GKVIIIGS-GVSGLAAARQLQSFGMDVTLLEA 36 (449)
T ss_dssp CEEEEECC-BHHHHHHHHHHHHTTCEEEEECS
T ss_pred CcEEEECC-CHHHHHHHHHHHhCCCCEEEEeC
Confidence 47999994 99999999999999999999954
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=80.30 E-value=0.83 Score=38.25 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=27.6
Q ss_pred EEEEEcCCchhHHHHHHHHHhCCC-eEEEEeCC
Q 013467 118 RIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNF 149 (442)
Q Consensus 118 ~vlVtGatG~lG~~lv~~Ll~~g~-~V~~l~r~ 149 (442)
+|+|+|| |.-|...+.+|.++|+ +|+++.+.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEAT 33 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECC
Confidence 5999995 9999999999999995 79999764
|