Citrus Sinensis ID: 013493

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MLQNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGEGNFVM
ccccccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEccEEEccccccEEEEccEEEccccccccccEEEEEcccccccccccccccccccEEcccccccccEEEEEccHHHHHHHccccEEcEEEEccccEEEEEEEEEEEcccEEEEEccEEEEEEccccccEEEccccccccccEEEEEEEccccccEEEEEEEEEcEEEEEcccccEEEEEEEEccccccccEEEEEEEcccEEEEEEEEEEcccccEEcccEEEEEEccEEEEccEEEEEEcccEEEEEEEEcEEEEccccccccEEEEcccccEEEEEEEEccccccEEEEEEEEEEEEEccccEEEEEcccccccccccccEEEEEEEccccccccEEEEEEEcccEEEEEEccEEEEEEEEEEEcccccccccccc
ccccccEEEEEcccccccccccHHHHHHHHHHHHHccccccEEcccccccccEEEEccccEEEEcccEEEcccccEEEEEccEEEEccccccccEEEEEEcccccccccccccccccHHHccHccccccccEEEEEEHHHHHccccccccEEEEEEcEEEEEccEEEEEEcccEEEEEcccEEEEEccccccEEEcccccccccccEEEEEcccccccEEEEEEEEccEEEEEEcccEEEEEEEEEccccccccEEEEEEccccccEEEEcEEEEccEEEEcccEEEEEEcccEccccEEEEEccccEEEEEEEEccccccccccccEEEEEcccccEEcEEEEEccccccEEEEEEEEEEEEcccccEEEEEcccEEEccccccEEEEEEEEccccccccccEEEEccccEEEEEEcccEEEEEEEEEEcccccccccEcc
mlqngrvfypigygadptganesSDAILQALNDAFNvqsglellpgvkdlggviidfqggnykiskpirfppgvgnvvvqggtlrasdtfpsdrhlielwapnsqklkrtdaikidrnyvfndvkdqtartyyeditfrdvlfdsgfrgggifvidsARIRINNCFFLHFTTqgilvqrghetfisscflgqrstvggdpgekgfsgtaidlasndnaitdVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIdncyldytgivledpvqvhvtngffLGDANIVLKSIKGRISGLTIVENmfngsparnvpiikldgefsniDQVVIERNNVNGMSLKSTAGklsvagngtkwvadfspilvfpnrishfqysmyvkglpRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDqynmvgegnfvm
MLQNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRAsdtfpsdrhlielwapnsqklkrtdaikidrnyvfndvkdqtartyyeditfrdVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAvdqynmvgegnfvm
MLQNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPgvgnvvvqggTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGvtnvsdnvvvvesdRAVTAVVSVAVDQYNMVGEGNFVM
******VFYPIGYGA*********DAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGG*****GFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGE*****
*****RV**PIGYGADPTGANESSDAILQALNDAFNV*********VKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRST***********GTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAG**SVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVG*GNFVM
MLQNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGEGNFVM
****GRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKL*RTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGE*NF**
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MLQNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAVTAVVSVAVDQYNMVGEGNFVM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
O49432481 Polygalacturonase QRT3 OS no no 0.902 0.829 0.512 1e-113
>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1 Back     alignment and function desciption
 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/433 (51%), Positives = 291/433 (67%), Gaps = 34/433 (7%)

Query: 6   RVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKIS 65
           RV+  I YGADPTG  +S+DAIL+A+ +AF+  +   L+ G+ DLGG  ID QGG+Y IS
Sbjct: 74  RVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLIS 133

Query: 66  KPIRFP-PGVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFNDV 124
           +P+RFP  G GN+++ GGTLRAS+ FP DR+LIEL                         
Sbjct: 134 RPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIEL------------------------- 168

Query: 125 KDQTARTYY--EDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHF-TTQGILVQRGH 181
           KD++++  Y  E IT RD+L D  +RGG I VI+S R  I+NC+   F  T GILV+ GH
Sbjct: 169 KDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGH 228

Query: 182 ETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVT 241
           ET+I + FLGQ  T GGD GE+ FSGTAI+L  NDNA+TD  IFSA IGV++ GQAN+++
Sbjct: 229 ETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLLS 288

Query: 242 RVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIV 301
            VHCYNKAT FGG GI ++L      RI N YLDYTGIV EDPVQ+ ++  FFLGDA I+
Sbjct: 289 GVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFIL 348

Query: 302 LKSIKGRISGLTIVENMFNGSPARNVPIIKLDGE---FSNIDQVVIERNNVNGMSLKSTA 358
           LKSI G I G++IV+NMF+GS    V I++LD     F ++ QVV++RN+VNGM  KST 
Sbjct: 349 LKSIAGYIRGVSIVDNMFSGS-GHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTV 407

Query: 359 GKLSVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESD 418
            + SV GNGT W  DF+P+L+FP+ I+H QY++ V     +F  + + NVSDN VVVE++
Sbjct: 408 ARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTL-VASEAGVFPLHALRNVSDNRVVVETN 466

Query: 419 RAVTAVVSVAVDQ 431
             VT  V V V+Q
Sbjct: 467 APVTGTVYVTVNQ 479
Polygalacturonase required for degrading the pollen mother cell wall during microspore development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
356510814482 PREDICTED: polygalacturonase QRT3-like [ 0.961 0.881 0.730 0.0
356558236475 PREDICTED: polygalacturonase QRT3-like [ 0.947 0.882 0.716 1e-178
356528140491 PREDICTED: polygalacturonase QRT3-like [ 0.961 0.865 0.723 1e-176
224074137422 predicted protein [Populus trichocarpa] 0.952 0.997 0.701 1e-174
358348522466 Polygalacturonase QRT3 [Medicago truncat 0.952 0.903 0.692 1e-173
297738013472 unnamed protein product [Vitis vinifera] 0.957 0.896 0.689 1e-169
225423624469 PREDICTED: polygalacturonase QRT3-like [ 0.954 0.899 0.689 1e-169
357449213488 Polygalacturonase QRT3 [Medicago truncat 0.952 0.862 0.705 1e-165
388498170491 unknown [Medicago truncatula] 0.952 0.857 0.703 1e-164
255585445405 conserved hypothetical protein [Ricinus 0.914 0.997 0.714 1e-164
>gi|356510814|ref|XP_003524129.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/430 (73%), Positives = 359/430 (83%), Gaps = 5/430 (1%)

Query: 3   QNGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNY 62
           ++GRV Y   YGADPTG  ESSD IL+A+ DAF +Q G+E + GV DLGGV+ID +GGNY
Sbjct: 57  KSGRVLYVSEYGADPTGNEESSDGILKAVEDAFALQKGVEFVGGVNDLGGVVIDLEGGNY 116

Query: 63  KISKPIRFPP-GVGNVVVQGGTLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVF 121
           KISKPI FP  G  N+VV+GGTLRASDTFP DRHLIELW+ NS KL+  +++  D   VF
Sbjct: 117 KISKPISFPSSGGANLVVKGGTLRASDTFPGDRHLIELWSSNSGKLETKESLNAD---VF 173

Query: 122 NDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGH 181
             +K Q    YYEDITFRD+LFDS +RGGGIF++DSAR RINNCFFLHFTT+GILVQ+GH
Sbjct: 174 KSIKAQNNAIYYEDITFRDILFDSSYRGGGIFIVDSARTRINNCFFLHFTTEGILVQQGH 233

Query: 182 ETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVT 241
           ETFISSCFLGQ STVGGD GEK FSG AIDLASNDNA+TDV IFSAAIGV+LRGQANI+T
Sbjct: 234 ETFISSCFLGQHSTVGGDKGEKDFSGVAIDLASNDNAVTDVAIFSAAIGVVLRGQANILT 293

Query: 242 RVHCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIV 301
            VHCYNKAT FGGIGILVKLA  +LTRIDNCYLDYTGIV+EDPVQVHVTNG FLGDANIV
Sbjct: 294 GVHCYNKATYFGGIGILVKLAGNSLTRIDNCYLDYTGIVMEDPVQVHVTNGLFLGDANIV 353

Query: 302 LKSIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKL 361
           LKSIKG+I GL IV+NMFNG P + VPI+KLDGEFS+I+QVVI+RNNVNGMSL+ST GKL
Sbjct: 354 LKSIKGQIFGLNIVDNMFNGDPNKKVPIVKLDGEFSSIEQVVIDRNNVNGMSLRSTVGKL 413

Query: 362 SVAGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGVTNVSDNVVVVESDRAV 421
           + +GNGTKWVADFS +LVFPNRISHFQYS Y +   + FVA  +TNVSDNVVVVES++  
Sbjct: 414 TASGNGTKWVADFSSVLVFPNRISHFQYSFYAQDEAK-FVALSMTNVSDNVVVVESEKEA 472

Query: 422 TAVVSVAVDQ 431
              VS  V+Q
Sbjct: 473 KGFVSFKVEQ 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356558236|ref|XP_003547413.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
>gi|356528140|ref|XP_003532663.1| PREDICTED: polygalacturonase QRT3-like [Glycine max] Back     alignment and taxonomy information
>gi|224074137|ref|XP_002304268.1| predicted protein [Populus trichocarpa] gi|222841700|gb|EEE79247.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348522|ref|XP_003638294.1| Polygalacturonase QRT3 [Medicago truncatula] gi|355504229|gb|AES85432.1| Polygalacturonase QRT3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297738013|emb|CBI27214.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225423624|ref|XP_002275888.1| PREDICTED: polygalacturonase QRT3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357449213|ref|XP_003594883.1| Polygalacturonase QRT3 [Medicago truncatula] gi|355483931|gb|AES65134.1| Polygalacturonase QRT3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388498170|gb|AFK37151.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255585445|ref|XP_002533416.1| conserved hypothetical protein [Ricinus communis] gi|223526729|gb|EEF28959.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
TAIR|locus:2119817483 AT4G20040 "AT4G20040" [Arabido 0.943 0.863 0.614 7.4e-137
TAIR|locus:2119832481 QRT3 "QUARTET 3" [Arabidopsis 0.726 0.667 0.492 3.2e-100
TAIR|locus:2119817 AT4G20040 "AT4G20040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
 Identities = 263/428 (61%), Positives = 318/428 (74%)

Query:     5 GRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKI 64
             G+V YPIGYGADPTG  +SSDAIL+AL DAF +Q+GLE+LP V DLGG++ID QGG+Y I
Sbjct:    66 GKVIYPIGYGADPTGGQDSSDAILEALTDAFQLQTGLEMLPRVADLGGLVIDLQGGSYMI 125

Query:    65 SKPIRFPPXXXXXXXXXX-TLRASDTFPSDRHLIELWAPNSQKLKRTDAIKIDRNYVFND 123
              KP+RFP            T RAS+ FP DRHL+EL A N++K      +K+     F+D
Sbjct:   126 GKPLRFPSSGGGNLVVKGGTFRASELFPGDRHLVELVASNAKK-----PMKMSPEESFSD 180

Query:   124 VKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSARIRINNCFFLHFTTQGILVQRGHET 183
              KDQ++  +YED+TF+DVLFDS FRGGGI VIDSARIRI NC+FLHFTTQGI VQ GHET
Sbjct:   181 QKDQSSGIFYEDVTFQDVLFDSRFRGGGILVIDSARIRITNCYFLHFTTQGIKVQGGHET 240

Query:   184 FISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFSAAIGVLLRGQANIVTRV 243
             +IS+ FLGQ STVGGD  E+GF+GT ID++SNDNAITDV IFSA IG+ L G AN+VT V
Sbjct:   241 YISNSFLGQHSTVGGDREERGFTGTGIDISSNDNAITDVVIFSAGIGISLNGGANMVTGV 300

Query:   244 HCYNKATAFGGIGILVKLADAALTRIDNCYLDYTGIVLEDPVQVHVTNGFFLGDANIVLK 303
             HCYNKAT FGGIGILVK   + LTRIDNCYLDYTGIV+EDPV VHVTN  FLGDANIVL+
Sbjct:   301 HCYNKATWFGGIGILVK---SHLTRIDNCYLDYTGIVIEDPVHVHVTNALFLGDANIVLR 357

Query:   304 SIKGRISGLTIVENMFNGSPARNVPIIKLDGEFSNIDQVVIERNNVNGMSLKSTAGKLSV 363
             S+ G+ISG+ IV NMF+G+   N PI+KL+GEF +I+QVVI++NN  GM LKST GK  V
Sbjct:   358 SVHGKISGVNIVNNMFSGTAKNNFPIVKLEGEFHDINQVVIDQNNAEGMMLKSTTGKAMV 417

Query:   364 AGNGTKWVADFSPILVFPNRISHFQYSMYVKGLPRLFVAYGXXXXXXXXXXXXXXRAVTA 423
             + NGT+W+ADFSP+LVFPNRI+H+Q+S + +       A                RAVT 
Sbjct:   418 SANGTRWIADFSPVLVFPNRINHYQHSFFAQS--GQIPANAVTNVSNNMVVVETDRAVTG 475

Query:   424 VVSVAVDQ 431
              VS+   Q
Sbjct:   476 TVSIIAYQ 483
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2119832 QRT3 "QUARTET 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.2061.1
hypothetical protein (422 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02793443 Probable polygalacturonase 99.98
PLN03003456 Probable polygalacturonase At3g15720 99.98
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.97
PLN03010409 polygalacturonase 99.97
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.8
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.66
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.53
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.46
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.24
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.21
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.79
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.49
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 96.86
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.44
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.36
PLN02793443 Probable polygalacturonase 96.1
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 95.69
PF1221867 End_N_terminal: N terminal extension of bacterioph 95.1
PLN02218431 polygalacturonase ADPG 95.01
PLN03003456 Probable polygalacturonase At3g15720 95.0
PLN02155394 polygalacturonase 94.99
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 94.88
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.49
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 92.9
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 89.74
PLN03010409 polygalacturonase 89.28
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 87.85
PLN02480343 Probable pectinesterase 86.79
PLN02773317 pectinesterase 86.26
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 85.54
PLN02170529 probable pectinesterase/pectinesterase inhibitor 84.39
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-32  Score=282.93  Aligned_cols=248  Identities=19%  Similarity=0.240  Sum_probs=184.6

Q ss_pred             CCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeC-CCCcceEE-ec
Q 013493            4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGNVVV-QG   81 (442)
Q Consensus         4 ~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~-pc~gni~i-~~   81 (442)
                      .+++|||+||||++||++|+|+|||+||++||+..            ||++|++|+|+|++ +||.|. |||+++.+ .+
T Consensus        24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~------------gGg~v~vP~G~yl~-g~i~l~gpcksnv~l~l~   90 (394)
T PLN02155         24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA------------SSATVVVPTGTFLL-KVITFGGPCKSKITFQVA   90 (394)
T ss_pred             CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC------------CCeEEEECCCcEEE-EEEEEcccCCCCceEEEe
Confidence            46799999999999999999999999999999643            56789999999997 899999 99999874 67


Q ss_pred             ceEEeCCCCCC---CcceEEEecCCCcccccceeeecccceeeecccCcccCccceee--eeeeEEEecceEecceeEec
Q 013493           82 GTLRASDTFPS---DRHLIELWAPNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDI--TFRDVLFDSGFRGGGIFVID  156 (442)
Q Consensus        82 GTLkAp~df~~---d~~wI~f~~~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~i--T~rnl~~D~n~~~~GIt~~N  156 (442)
                      |+|+||++|+.   ..+||.|...+.+.++| |++||||+.||.+..-   ..+|+..  .++ +....++.+.||+++|
T Consensus        91 G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~---~~~~~~~p~~i~-~~~~~nv~i~gitl~n  165 (394)
T PLN02155         91 GTVVAPEDYRTFGNSGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS---GQNCPPGVRSIS-FNSAKDVIISGVKSMN  165 (394)
T ss_pred             eEEECccccccccccceeEEEECcCCCEEEc-cEEecCceeEEEcccC---CCCCCCccccee-EEEeeeEEEECeEEEc
Confidence            99999988854   34799999999999998 9999999999964321   2244321  122 4444589999999999


Q ss_pred             cccEE--EeeeE---Eeee---------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeEE
Q 013493          157 SARIR--INNCF---FLHF---------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDV  222 (442)
Q Consensus       157 Sq~~~--I~Nc~---~~~f---------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv  222 (442)
                      |+++|  +.+|.   +.++         |||||++.+|+.|.|++|+|.     .||.      .++|.-...+=.|.+.
T Consensus       166 Sp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~-----~gDD------cIaik~gs~nI~I~n~  234 (394)
T PLN02155        166 SQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQ-----TGDD------CVAIGPGTRNFLITKL  234 (394)
T ss_pred             CCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEe-----cCCc------eEEcCCCCceEEEEEE
Confidence            99855  56663   3333         999999999999999999998     4555      5666444444477776


Q ss_pred             EEEeeeEeEEEccc-----eeEEEEEEEeccccccceeeEEEee-cccceeeeeeeeecccceeeeC
Q 013493          223 TIFSAAIGVLLRGQ-----ANIVTRVHCYNKATAFGGIGILVKL-ADAALTRIDNCYLDYTGIVLED  283 (442)
Q Consensus       223 ~i~~a~~Gv~~~gq-----~~~~~gvh~~n~~t~~gg~gi~~~~-~~~~~~ri~ncyld~~~iv~~d  283 (442)
                      ....+ -|+.++..     ...+++|++.|+.-.--=-|+.+|- ++.....+.|-+.  ..|.|++
T Consensus       235 ~c~~G-hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f--~ni~m~~  298 (394)
T PLN02155        235 ACGPG-HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFF--QDLVMKN  298 (394)
T ss_pred             EEECC-ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEE--EeEEEcC
Confidence            66543 58888663     4457788887764222224777774 2223355666553  3555554

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-05
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-04
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.95
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.95
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.93
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.9
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.88
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.87
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.85
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.84
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.84
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.8
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.78
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.7
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.7
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.69
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.67
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.65
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.64
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.51
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.5
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.0
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.77
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.51
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.06
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.71
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 96.32
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 95.94
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 95.85
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.76
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.65
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.59
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 95.59
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.48
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 95.4
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.3
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 95.25
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 94.57
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 94.27
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 93.87
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 93.18
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 92.47
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 92.18
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 91.48
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 90.69
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 87.94
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 87.29
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 86.61
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 85.97
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 85.22
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 84.57
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 84.15
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=99.95  E-value=7.2e-27  Score=241.62  Aligned_cols=237  Identities=15%  Similarity=0.139  Sum_probs=161.6

Q ss_pred             CCeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeCCCCcceE-Eecc
Q 013493            4 NGRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFPPGVGNVV-VQGG   82 (442)
Q Consensus         4 ~~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~pc~gni~-i~~G   82 (442)
                      .+++|||++|||++||++|+|+|||+||+ ||+..            ||++|++|+|+|++ +||.|++.   +. ..+|
T Consensus        24 ~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~------------ggg~v~vP~G~yl~-~~l~l~s~---v~l~l~g   86 (448)
T 3jur_A           24 PDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQ------------GGGRLIVPEGVFLT-GPIHLKSN---IELHVKG   86 (448)
T ss_dssp             CSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHH------------TCEEEEECSSEEEE-SCEECCTT---EEEEESS
T ss_pred             CCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhc------------CCeEEEECCCcEEE-eeeEeCCC---cEEEEEE
Confidence            35699999999999999999999999997 55421            46789999999987 89999753   44 4779


Q ss_pred             eEEeCCCC----CC------------CcceEEEecCCCcccccceeeeccc--ceeeecccCcccC--------------
Q 013493           83 TLRASDTF----PS------------DRHLIELWAPNSQKLKRTDAIKIDR--NYVFNDVKDQTAR--------------  130 (442)
Q Consensus        83 TLkAp~df----~~------------d~~wI~f~~~n~l~v~G~GtfDgqG--~~~W~~~~c~~~~--------------  130 (442)
                      ||+||+++    |.            ...||.+...+.+.++|+|++||+|  ..||.|..++...              
T Consensus        87 tL~~s~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~  166 (448)
T 3jur_A           87 TIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKK  166 (448)
T ss_dssp             EEEECCCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHH
T ss_pred             EEEecCCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhh
Confidence            99999753    21            0238999999999999999999999  8899865432100              


Q ss_pred             -----------------ccceeeeeeeEEE--ecceEecceeEecccc--EEEeeeEEeee----------ccccEEEee
Q 013493          131 -----------------TYYEDITFRDVLF--DSGFRGGGIFVIDSAR--IRINNCFFLHF----------TTQGILVQR  179 (442)
Q Consensus       131 -----------------~~c~~iT~rnl~~--D~n~~~~GIt~~NSq~--~~I~Nc~~~~f----------NTDGIhI~~  179 (442)
                                       ..+.. -++-|.|  ..++.+.||+++||++  +|+.+|....+          ||||||+.+
T Consensus       167 l~~~~~~~~p~~~~~~~~~~~~-RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~~~NtDGidi~~  245 (448)
T 3jur_A          167 LKEMAERGTPVEERVFGKGHYL-RPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPES  245 (448)
T ss_dssp             HHHHHHHTCCGGGCBCSTTCCC-CCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEECSTTCCSBCCBS
T ss_pred             hhhhhcccCcchhhhccccccC-CceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeeccCCCccccccC
Confidence                             00111 1222334  3489999999999987  55666633322          999999999


Q ss_pred             eeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCC------------Cc-eeeEEEE--EeeeEeEEEccc-eeEEEEE
Q 013493          180 GHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASN------------DN-AITDVTI--FSAAIGVLLRGQ-ANIVTRV  243 (442)
Q Consensus       180 S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gn------------d~-~itDv~i--~~a~~Gv~~~gq-~~~~~gv  243 (442)
                      |+.|.|++|+|..     ||.        +|.+.+.            .| .|.|..+  ..+.=|+.++.. ...+++|
T Consensus       246 s~nV~I~n~~i~~-----gDD--------cIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV  312 (448)
T 3jur_A          246 CKYMLIEKCRFDT-----GDD--------SVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNV  312 (448)
T ss_dssp             CEEEEEESCEEEE-----SSE--------EEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEE
T ss_pred             CcCEEEEeeEEEe-----CCC--------cEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEE
Confidence            9999999999982     333        2333321            11 3344444  223337777433 3457778


Q ss_pred             EEeccccccceeeEEEeecccceeeeee
Q 013493          244 HCYNKATAFGGIGILVKLADAALTRIDN  271 (442)
Q Consensus       244 h~~n~~t~~gg~gi~~~~~~~~~~ri~n  271 (442)
                      ++.|+.-.-.--||.+|.-.-.-..+.|
T Consensus       313 ~v~n~~~~~t~~GirIKt~~g~gG~v~n  340 (448)
T 3jur_A          313 VARNNVYMNVERALRLKTNSRRGGYMEN  340 (448)
T ss_dssp             EEESCEEESCSEEEEEECCTTTCSEEEE
T ss_pred             EEEEEEEecccceEEEEEEcCCCceEee
Confidence            8888765322357777752112244555
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 0.002
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 42/366 (11%), Positives = 96/366 (26%), Gaps = 78/366 (21%)

Query: 6   RVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKIS 65
           +    + YGA    + +   AI  A     +              GG++     GNY ++
Sbjct: 19  KTCNILSYGAVADNSTDVGPAITSAWAACKS--------------GGLVY-IPSGNYALN 63

Query: 66  KPIRFPPGVGNVVVQGGTLRASDTFPSDRHLIE---------------------LWAPNS 104
             +    G    +   G +  + T   +   +                      ++    
Sbjct: 64  TWVTLTGGSATAIQLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG 123

Query: 105 QKLKRTDAIKIDRNYVFNDVKDQTARTYY------EDITFRDVLFDSGFRGGG-IFVIDS 157
               R   +    ++  +D+    A  ++       D    ++    G  GG     +  
Sbjct: 124 TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWG 183

Query: 158 ARIRINNCFFLHFTTQGILVQRGHETFIS--SCFLGQRSTVGGDPGEKGFSGTAIDLASN 215
           + I +++    +      +    +   +    C       +G    +   +         
Sbjct: 184 SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVT--------- 234

Query: 216 DNAITDVTIFSAAIGVLLRGQANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCYLD 275
           D    +V  +S+    +++      T  +   +     G    +         ID  +  
Sbjct: 235 DIVYRNVYTWSSNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSL--------DIDGYWSS 286

Query: 276 YTGIVLEDPVQVHVTNGFFLGDANIVLKSIKGRISGLTIVENM-FNGSPARNVPIIKLDG 334
            T         V +         NI +K+ KG  +       +    S     P   L  
Sbjct: 287 MTA---VAGDGVQLN--------NITVKNWKGTEANGATRPPIRVVCSD--TAPCTDL-- 331

Query: 335 EFSNID 340
              +I 
Sbjct: 332 TLEDIA 337

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.96
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.87
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.81
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.77
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.77
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.73
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.62
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 97.41
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.77
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.55
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.26
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 96.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.96
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.74
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 95.09
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.83
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.98
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 92.53
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 92.12
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 90.41
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 83.71
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.96  E-value=2.6e-28  Score=247.63  Aligned_cols=228  Identities=14%  Similarity=0.120  Sum_probs=157.7

Q ss_pred             CeeeeecccCCCCCCCchhHHHHHHHHHHhhccCCCcccccccccCCceEEEecCceEEEeceEEeC-CCCcceE-Eecc
Q 013493            5 GRVFYPIGYGADPTGANESSDAILQALNDAFNVQSGLELLPGVKDLGGVIIDFQGGNYKISKPIRFP-PGVGNVV-VQGG   82 (442)
Q Consensus         5 ~rvfNV~dYGAdpdG~tDsT~AfqkAw~dAc~~~~~st~~~G~~~lGga~V~lPgGtYlIs~pI~f~-pc~gni~-i~~G   82 (442)
                      .++|||+||||++||++|+|+|||+||+ ||++              |++|++|+|+|+|++||.|. ++.  +. ..+|
T Consensus        18 ~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~--------------gg~V~iP~Gty~l~~~i~l~g~~~--~~l~~~G   80 (422)
T d1rmga_          18 TKTCNILSYGAVADNSTDVGPAITSAWA-ACKS--------------GGLVYIPSGNYALNTWVTLTGGSA--TAIQLDG   80 (422)
T ss_dssp             HCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB--------------TCEEEECSSEEEECSCEEEESCEE--EEEEECS
T ss_pred             CcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC--------------CCEEEECCCcEEEeCcEEEcCCCc--eEEEEeE
Confidence            5699999999999999999999999995 7852              35799999999999999998 664  43 4899


Q ss_pred             eEEeCCCCCCCcceEEEec---CCCcccccceeeecccceeeecccCcccCccceeeeeeeEEEecceEecceeEecccc
Q 013493           83 TLRASDTFPSDRHLIELWA---PNSQKLKRTDAIKIDRNYVFNDVKDQTARTYYEDITFRDVLFDSGFRGGGIFVIDSAR  159 (442)
Q Consensus        83 TLkAp~df~~d~~wI~f~~---~n~l~v~G~GtfDgqG~~~W~~~~c~~~~~~c~~iT~rnl~~D~n~~~~GIt~~NSq~  159 (442)
                      +|+++.+.+.  +|+.+..   ...+...|+|++||+|..||.....     ...-  ++ +....++.+.||+++||++
T Consensus        81 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~~-----~p~~--l~-~~~~~n~~i~git~~nsp~  150 (422)
T d1rmga_          81 IIYRTGTASG--NMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY-----GARI--LR-LTDVTHFSVHDIILVDAPA  150 (422)
T ss_dssp             EEEECCCCSS--EEEEEEEEEEEEEECSSSCCEEECCTHHHHTTTCC-----CCEE--EE-EEEEEEEEEEEEEEECCSS
T ss_pred             EEEeccCCcc--CEEEeccCccEEEEEeecceEEecCcceecCCCCC-----CCcE--EE-EEeeeeeEEECcEecCCCc
Confidence            9999876554  3444433   3445667889999999999853211     1111  22 3344689999999999987


Q ss_pred             --EEEeeeEEeee-----------ccccEEEeeeeeEEEeeeeeeeccccCCCCCCcCcceEEEEecCCCceeeEEEEEe
Q 013493          160 --IRINNCFFLHF-----------TTQGILVQRGHETFISSCFLGQRSTVGGDPGEKGFSGTAIDLASNDNAITDVTIFS  226 (442)
Q Consensus       160 --~~I~Nc~~~~f-----------NTDGIhI~~S~~V~I~nS~Igq~~t~gg~~~e~~~~gtgI~l~gnd~~itDv~i~~  226 (442)
                        +++.+|....+           ||||||+.+| .+.|+||+|.     .||.      ...|.=.+.+=.|.|+... 
T Consensus       151 ~~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~~s-nv~I~n~~i~-----~gDD------cIaiks~s~nI~i~n~~c~-  217 (422)
T d1rmga_         151 FHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWGS-NIWVHDVEVT-----NKDE------CVTVKSPANNILVESIYCN-  217 (422)
T ss_dssp             CSEEEEEEEEEEEEEEEEECCSSTTCCSEEEEEE-EEEEEEEEEE-----SSSE------EEEEEEEEEEEEEEEEEEE-
T ss_pred             eEEEEeccccEEEEeeEEcCCCCCccceEeeccc-EEEEEeeEEE-----cCCC------ccccCCCCccEEEEeeEEc-
Confidence              55777744333           9999999765 6999999998     2433      3444333323356665544 


Q ss_pred             eeEeEEEcc--ceeEEEEEEEeccccccceeeEEEeecccceeeeeeee
Q 013493          227 AAIGVLLRG--QANIVTRVHCYNKATAFGGIGILVKLADAALTRIDNCY  273 (442)
Q Consensus       227 a~~Gv~~~g--q~~~~~gvh~~n~~t~~gg~gi~~~~~~~~~~ri~ncy  273 (442)
                      ..-|+.++.  +...+++|++.|+...-.-.|+.+|-.+ ....+.|..
T Consensus       218 ~g~GisiGs~g~~~~V~nV~v~n~~~~~s~~g~~ik~~~-g~G~V~nI~  265 (422)
T d1rmga_         218 WSGGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNG-GSGTVSNVL  265 (422)
T ss_dssp             SSSEEEEEEECTTEEEEEEEEEEEEEESSSCSEEEEEBB-CCEEEEEEE
T ss_pred             cccceeEeeccCCCCEEEEEEEeEEEeCCCceEEEEEcC-CCceecceE
Confidence            444666653  4455777777776544444466666543 334555543
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure