Citrus Sinensis ID: 013512
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 441 | ||||||
| 255576509 | 497 | Protein PNS1, putative [Ricinus communis | 0.963 | 0.855 | 0.851 | 0.0 | |
| 225423919 | 504 | PREDICTED: CTL-like protein DDB_G0274487 | 0.963 | 0.843 | 0.816 | 0.0 | |
| 356534376 | 440 | PREDICTED: CTL-like protein DDB_G0274487 | 0.963 | 0.965 | 0.807 | 0.0 | |
| 356574175 | 493 | PREDICTED: CTL-like protein DDB_G0274487 | 0.963 | 0.862 | 0.8 | 0.0 | |
| 449434644 | 502 | PREDICTED: CTL-like protein DDB_G0274487 | 0.954 | 0.838 | 0.790 | 0.0 | |
| 357488431 | 486 | Choline transporter-like protein 5-A [Me | 0.956 | 0.868 | 0.800 | 0.0 | |
| 356498302 | 459 | PREDICTED: CTL-like protein DDB_G0274487 | 0.947 | 0.910 | 0.801 | 0.0 | |
| 186478872 | 430 | plasma-membrane choline transporter-like | 0.956 | 0.981 | 0.770 | 1e-176 | |
| 297845612 | 488 | hypothetical protein ARALYDRAFT_313379 [ | 0.968 | 0.875 | 0.751 | 1e-175 | |
| 15222609 | 488 | plasma-membrane choline transporter-like | 0.968 | 0.875 | 0.751 | 1e-174 |
| >gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/425 (85%), Positives = 390/425 (91%)
Query: 17 SDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHI 76
SDRF I R+T + LTEDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHI
Sbjct: 73 SDRFKIDRFTTGSSGSNRGLTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHI 132
Query: 77 LTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLP 136
LTTYLAVISVLCFWC+QFFWGVAFA AALQFLYVISVI+RL FTMLVLQKAVKMVWSLP
Sbjct: 133 LTTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLP 192
Query: 137 EVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVH 196
EV RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVH
Sbjct: 193 EVMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVH 252
Query: 197 VIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRG 256
VIVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG
Sbjct: 253 VIVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRG 312
Query: 257 IRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV 316
+RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGV
Sbjct: 313 LRSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGV 372
Query: 317 EALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMV 376
EALVAYDCSGAVLLMGT++ GLITGTC+G WT KW+DRV+MVGSTAMLMGMVLVG+AMV
Sbjct: 373 EALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGMVLVGVAMV 432
Query: 377 VVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQ 436
VVESAVTSIYICYAEDPLLIHRWDAEFFNQ+SETLHQRLQ+RSARAREV+++NRFD H +
Sbjct: 433 VVESAVTSIYICYAEDPLLIHRWDAEFFNQLSETLHQRLQHRSARAREVVSSNRFDIHIR 492
Query: 437 ESLSV 441
ES+ V
Sbjct: 493 ESIPV 497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|186478872|ref|NP_001117355.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192514|gb|AEE30635.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 441 | ||||||
| TAIR|locus:2031235 | 488 | AT1G25500 [Arabidopsis thalian | 0.965 | 0.872 | 0.674 | 4.7e-151 | |
| DICTYBASE|DDB_G0274487 | 555 | DDB_G0274487 "Protein PNS1" [D | 0.746 | 0.592 | 0.270 | 3.6e-33 | |
| TAIR|locus:2177110 | 569 | AT5G13760 "AT5G13760" [Arabido | 0.700 | 0.543 | 0.266 | 1.3e-27 | |
| TAIR|locus:2079444 | 482 | AT3G03700 [Arabidopsis thalian | 0.780 | 0.713 | 0.228 | 2.5e-15 | |
| TAIR|locus:2100865 | 482 | AT3G04440 [Arabidopsis thalian | 0.780 | 0.713 | 0.228 | 2.5e-15 | |
| DICTYBASE|DDB_G0269978 | 506 | DDB_G0269978 [Dictyostelium di | 0.612 | 0.533 | 0.229 | 5.4e-15 | |
| CGD|CAL0005194 | 518 | orf19.6077 [Candida albicans ( | 0.306 | 0.260 | 0.333 | 7.6e-15 | |
| UNIPROTKB|Q5AB93 | 518 | PNS1 "Protein PNS1" [Candida a | 0.306 | 0.260 | 0.333 | 7.6e-15 | |
| ASPGD|ASPL0000039512 | 533 | AN10377 [Emericella nidulans ( | 0.519 | 0.429 | 0.274 | 1.5e-14 | |
| SGD|S000005687 | 539 | PNS1 "Protein of unknown funct | 0.306 | 0.250 | 0.321 | 4.2e-13 |
| TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
Identities = 292/433 (67%), Positives = 324/433 (74%)
Query: 2 VVKLCCLSHVIGEM------FSDRFNISRYTNQKVETKGELTEDYWPIYXXXXXXXXXXX 55
V+ L CL V+ + SDR NI RYT +E LTEDYWP+Y
Sbjct: 54 VIHLICLGFVLAVLGLNRFRISDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFIS 113
Query: 56 XXXXXXXXSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVI 115
S AN+M+K+SVHILTTYLAV+SVLCFWC FFWG AFA + LQFLYVISVI
Sbjct: 114 WVWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVI 173
Query: 116 DRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXX 175
DRL FTMLVL+KA+K+VW LP+V VA+ F VMLLWM +WSFG AGVVAS M D GR
Sbjct: 174 DRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWW 233
Query: 176 XXXXXXXXXFWTGAVLCNTVHVIVSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSL 234
FWTGAVLCNTVHVIVSGMVF VL H G++ S S+P + LV SLRYAVTTS
Sbjct: 234 LLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 293
Query: 235 GSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIA 294
GSICYGSLFTAAIRTLRWEIRG RSKI NECLLCCVDFLFHLVETLVRFFNKYAYVQIA
Sbjct: 294 GSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIA 353
Query: 295 VYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHD 354
VYGKGFN+SARDAWELFQSTGVEALVAYDCSGAVLLMGTI GGLITG+C G W + K+ D
Sbjct: 354 VYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSD 413
Query: 355 RVVMVGSTXXXXXXXXXXXXXXXXESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQR 414
RV+MV ST ESAVTSIYIC+AEDPLLI RWDA+F+ +MSE LH+R
Sbjct: 414 RVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRR 473
Query: 415 LQYRSARAREVLT 427
LQ+RS+RAREVLT
Sbjct: 474 LQHRSSRAREVLT 486
|
|
| DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00030306001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (504 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 441 | |||
| pfam04515 | 327 | pfam04515, Choline_transpo, Plasma-membrane cholin | 2e-77 |
| >gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 2e-77
Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)
Query: 95 FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 154
+ F + L +I + R+ + +L+ A V P + V + + ++
Sbjct: 1 IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60
Query: 155 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 199
+W + S ++GG LL+ L LFWT V+ HV +
Sbjct: 61 LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120
Query: 200 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 259
+G+V +MP P + S + A+T S GSIC+GSL A I+ +R + +R
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178
Query: 260 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 314
K+ ++ LLCC+ +E V + N+ AYV IA+YGKGF SA+D WEL +
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238
Query: 315 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 371
G+ ALV G VL +G + +TG A W + + + + A L+ ++
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298
Query: 372 GLAMVVVESAVTSIYICYAEDPLLIHRWD 400
+ M V ES V +I++C+AEDP L+
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327
|
This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 441 | |||
| KOG1362 | 577 | consensus Choline transporter-like protein [Lipid | 100.0 | |
| PF04515 | 334 | Choline_transpo: Plasma-membrane choline transport | 100.0 |
| >KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-70 Score=570.06 Aligned_cols=381 Identities=30% Similarity=0.490 Sum_probs=324.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh-------h---------------h---
Q 013512 39 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D---------------Q--- 93 (441)
Q Consensus 39 ~~~~il~~~~~ia~vls~~~l~llr~~~~~~vw~~i~~~~~~~~~~~~~~~~~-------~---------------~--- 93 (441)
.+|+.++..++++.+++.+++.++|.+++.++|..+.+..+.++.....+++. + +
T Consensus 147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~ 226 (577)
T KOG1362|consen 147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL 226 (577)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence 46889999999999999999999999999999988654433333222222221 0 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhcceecc-----
Q 013512 94 -FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----- 167 (441)
Q Consensus 94 -~~~~iv~~i~~~i~~l~~~~~r~rI~~a~~llk~A~~~i~~~p~l~~~p~~~~~~~~~~~~~w~~~~~g~~~~~----- 167 (441)
...||+++++.++.+++.+..|+||+++++++|+|+|++.+.|++.+.|+.+.++..+|..+|+.+..+..+.+
T Consensus 227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g 306 (577)
T KOG1362|consen 227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG 306 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 23689999999999999999999999999999999999999999999999999999999999998766554443
Q ss_pred -----cCCCchhHHHHHHHHH-HHHHHHHHhhcccceeeeeeeEEeeecCCCCCCCCCchHHHHHHHHHhhchhhHHHHH
Q 013512 168 -----MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGS 241 (441)
Q Consensus 168 -----~~~~~~~~~~~~~lf~-~~W~~~fi~~~~~~tvAg~v~~WYF~~~~~~~~~~~~~v~~s~~ra~~yhlGSia~GS 241 (441)
.+++....+..++++. ++|+++|+.|++|+++||++++|||++++ +++|..|+..|++|+++||+||+|+||
T Consensus 307 g~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GS 384 (577)
T KOG1362|consen 307 GCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGS 384 (577)
T ss_pred CceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhh
Confidence 2222222223333443 99999999999999999999999999986 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--c---hhHHHHHHHHHHHHHHHHHhhchhhhhhHhhcCCchhHhHHHHHHHHHhccc
Q 013512 242 LFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV 316 (441)
Q Consensus 242 Livaiv~~lr~il~~l~~~~~~--~---~~l~cc~~c~l~~~e~~l~~in~~Ayi~iAi~G~~F~~Sak~a~~Li~~n~~ 316 (441)
|++++++++|.++||+|+|+|+ | ++++||++||+||+|+++|++|||||+++|+|||+||+|||++|++++|| .
T Consensus 385 liv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v 463 (577)
T KOG1362|consen 385 LLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-V 463 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-H
Confidence 9999999999999999998874 3 58999999999999999999999999999999999999999999999999 5
Q ss_pred ceeeecchhhHHHH-HHHHHHHHHHHhhhhHHHHhhcCC--chhHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhcc
Q 013512 317 EALVAYDCSGAVLL-MGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAED 392 (441)
Q Consensus 317 ~~~~~~~~~~~~L~-lgk~~v~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~i~-~~v~~~f~~v~~~~vdTifvCf~eD 392 (441)
..+++.|.++++++ +||++++. ++.+++++.+..+++ +.+.+.+.++++| |+++++|+++++|+|||+|+||+||
T Consensus 464 ~~vv~~d~vs~~llflgk~l~~~-~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD 542 (577)
T KOG1362|consen 464 LRVVDVDLVSDFLLFLGKLLGAI-GSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAED 542 (577)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEec
Confidence 55799999999876 57765544 444577766666777 6778888999999 9999999999999999999999999
Q ss_pred chhhccCChhHHHHHHHHHHHHHHhccccccc
Q 013512 393 PLLIHRWDAEFFNQMSETLHQRLQYRSARARE 424 (441)
Q Consensus 393 ~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~~ 424 (441)
||.||++ ||+|++|++.+++..+++++.+++
T Consensus 543 ~e~n~gs-~~~p~~~~~~l~~~~~~~~~~~~~ 573 (577)
T KOG1362|consen 543 PESNDGS-PEKPQFMSEQLLEILGRSNKAPRV 573 (577)
T ss_pred HhhcCCC-CCcceeeeHHHHHhcccccccchh
Confidence 9999999 899999999999999998764433
|
|
| >PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00