Citrus Sinensis ID: 013512


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MVVKLCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
cEEEEEccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cEEEEHHHHHHHHEEEHcccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHEHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
MVVKLCCLSHVigemfsdrfnisrytnqkvetkgeltedywpiyAVAGGVGALLGWMWLLLlgspanqmLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGtagvvasdmddgGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIhdgrdsvsmphnplvKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIrskignnecLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLItgtcagawtytkwhdRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYIcyaedpllihRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MVVKLCCLSHvigemfsdrfnisrytNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVltnnrfdshtqeslsv
MVVKLCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYavaggvgallgwmwllllgSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRwwlllvlsvslFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTamlmgmvlvglamvvvESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
*VVKLCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQY************************
MVVKLCCLSHVIGEMFSDRFNISR*********GELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETL******************************
MVVKLCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRF**********
MVVKLCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSA*********************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVKLCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESLSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.784 0.623 0.289 2e-37
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.668 0.575 0.237 3e-19
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.716 0.571 0.247 6e-19
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.528 0.433 0.273 9e-19
Q75EG5553 Protein PNS1 OS=Ashbya go yes no 0.514 0.410 0.275 6e-17
Q5AB93518 Protein PNS1 OS=Candida a N/A no 0.523 0.445 0.267 1e-16
Q4PIP8602 Protein PNS1 OS=Ustilago N/A no 0.514 0.377 0.261 5e-16
Q6C938571 Protein PNS1 OS=Yarrowia yes no 0.725 0.560 0.249 6e-16
Q870V7554 Protein PNS1 OS=Neurospor N/A no 0.700 0.557 0.248 6e-16
Q55CN8506 CTL-like protein DDB_G026 no no 0.673 0.586 0.219 1e-15
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 189/370 (51%), Gaps = 24/370 (6%)

Query: 56  WMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFF-WG-----VAFATAAALQFL 109
           W WL L  + A  ++K S      +   + ++  +C  FF WG     + FA  A    L
Sbjct: 199 WAWLKLAANHAESLIKYS------FFGAMGLMIGYCVFFFVWGAIYLGIIFAIMAFFIIL 252

Query: 110 YVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMD 169
           + IS   R+ FT  +L  AV ++   P V R  YV + +  +W  +W  G+A    + + 
Sbjct: 253 FYISCRSRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIVW--GSAFARVNMVY 310

Query: 170 DGG-RWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRY 228
            G  +  + + L  +L+W   V+ NT+H  VSG++       G + V MPHNP + S R 
Sbjct: 311 TGAIQTCINIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGPNGVGMPHNPTLGSARR 370

Query: 229 AVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFH----LVETLVRF 284
           A+TTS GSIC+GSL  + I TLR+  + +   I N   ++  + ++F+    ++ ++V+F
Sbjct: 371 ALTTSFGSICFGSLIISLIETLRYLSQMM---INNRNVVVKIIGYIFNCILSMLSSIVQF 427

Query: 285 FNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCA 344
           FN YA+  +A+YGK F  SA+  + +F++     ++  +  G  + +G +V  L+  +  
Sbjct: 428 FNTYAFTHVAIYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIGGLVASLLL-SIL 486

Query: 345 GAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFF 404
           GA     + D  V  G+ A+ +G +++   + VV S+  S+++CY  +P ++     + +
Sbjct: 487 GALISIPF-DMSVYGGALALFIGYLVIITNLEVVYSSTISLFVCYVMEPEVLAHTKPQLY 545

Query: 405 NQMSETLHQR 414
              S T H R
Sbjct: 546 QLYSSTYHLR 555





Dictyostelium discoideum (taxid: 44689)
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q75EG5|PNS1_ASHGO Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AB93|PNS1_CANAL Protein PNS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C938|PNS1_YARLI Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q870V7|PNS1_NEUCR Protein PNS1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pns-1 PE=3 SV=1 Back     alignment and function description
>sp|Q55CN8|CTLHC_DICDI CTL-like protein DDB_G0269978 OS=Dictyostelium discoideum GN=DDB_G0269978 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
255576509497 Protein PNS1, putative [Ricinus communis 0.963 0.855 0.851 0.0
225423919504 PREDICTED: CTL-like protein DDB_G0274487 0.963 0.843 0.816 0.0
356534376440 PREDICTED: CTL-like protein DDB_G0274487 0.963 0.965 0.807 0.0
356574175493 PREDICTED: CTL-like protein DDB_G0274487 0.963 0.862 0.8 0.0
449434644502 PREDICTED: CTL-like protein DDB_G0274487 0.954 0.838 0.790 0.0
357488431486 Choline transporter-like protein 5-A [Me 0.956 0.868 0.800 0.0
356498302459 PREDICTED: CTL-like protein DDB_G0274487 0.947 0.910 0.801 0.0
186478872430 plasma-membrane choline transporter-like 0.956 0.981 0.770 1e-176
297845612488 hypothetical protein ARALYDRAFT_313379 [ 0.968 0.875 0.751 1e-175
15222609488 plasma-membrane choline transporter-like 0.968 0.875 0.751 1e-174
>gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/425 (85%), Positives = 390/425 (91%)

Query: 17  SDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHI 76
           SDRF I R+T     +   LTEDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHI
Sbjct: 73  SDRFKIDRFTTGSSGSNRGLTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHI 132

Query: 77  LTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLP 136
           LTTYLAVISVLCFWC+QFFWGVAFA  AALQFLYVISVI+RL FTMLVLQKAVKMVWSLP
Sbjct: 133 LTTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLP 192

Query: 137 EVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVH 196
           EV RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVH
Sbjct: 193 EVMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVH 252

Query: 197 VIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRG 256
           VIVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG
Sbjct: 253 VIVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRG 312

Query: 257 IRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV 316
           +RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGV
Sbjct: 313 LRSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGV 372

Query: 317 EALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVGLAMV 376
           EALVAYDCSGAVLLMGT++ GLITGTC+G WT  KW+DRV+MVGSTAMLMGMVLVG+AMV
Sbjct: 373 EALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGMVLVGVAMV 432

Query: 377 VVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQ 436
           VVESAVTSIYICYAEDPLLIHRWDAEFFNQ+SETLHQRLQ+RSARAREV+++NRFD H +
Sbjct: 433 VVESAVTSIYICYAEDPLLIHRWDAEFFNQLSETLHQRLQHRSARAREVVSSNRFDIHIR 492

Query: 437 ESLSV 441
           ES+ V
Sbjct: 493 ESIPV 497




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|186478872|ref|NP_001117355.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192514|gb|AEE30635.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.965 0.872 0.674 4.7e-151
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.746 0.592 0.270 3.6e-33
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.700 0.543 0.266 1.3e-27
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.780 0.713 0.228 2.5e-15
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.780 0.713 0.228 2.5e-15
DICTYBASE|DDB_G0269978506 DDB_G0269978 [Dictyostelium di 0.612 0.533 0.229 5.4e-15
CGD|CAL0005194518 orf19.6077 [Candida albicans ( 0.306 0.260 0.333 7.6e-15
UNIPROTKB|Q5AB93518 PNS1 "Protein PNS1" [Candida a 0.306 0.260 0.333 7.6e-15
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.519 0.429 0.274 1.5e-14
SGD|S000005687539 PNS1 "Protein of unknown funct 0.306 0.250 0.321 4.2e-13
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
 Identities = 292/433 (67%), Positives = 324/433 (74%)

Query:     2 VVKLCCLSHVIGEM------FSDRFNISRYTNQKVETKGELTEDYWPIYXXXXXXXXXXX 55
             V+ L CL  V+  +       SDR NI RYT   +E    LTEDYWP+Y           
Sbjct:    54 VIHLICLGFVLAVLGLNRFRISDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFIS 113

Query:    56 XXXXXXXXSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVI 115
                     S AN+M+K+SVHILTTYLAV+SVLCFWC  FFWG AFA  + LQFLYVISVI
Sbjct:   114 WVWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVI 173

Query:   116 DRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXX 175
             DRL FTMLVL+KA+K+VW LP+V  VA+ F  VMLLWM +WSFG AGVVAS M D GR  
Sbjct:   174 DRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWW 233

Query:   176 XXXXXXXXXFWTGAVLCNTVHVIVSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSL 234
                      FWTGAVLCNTVHVIVSGMVF VL H G++ S S+P + LV SLRYAVTTS 
Sbjct:   234 LLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSF 293

Query:   235 GSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIA 294
             GSICYGSLFTAAIRTLRWEIRG RSKI  NECLLCCVDFLFHLVETLVRFFNKYAYVQIA
Sbjct:   294 GSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIA 353

Query:   295 VYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHD 354
             VYGKGFN+SARDAWELFQSTGVEALVAYDCSGAVLLMGTI GGLITG+C G W + K+ D
Sbjct:   354 VYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSD 413

Query:   355 RVVMVGSTXXXXXXXXXXXXXXXXESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQR 414
             RV+MV ST                ESAVTSIYIC+AEDPLLI RWDA+F+ +MSE LH+R
Sbjct:   414 RVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRR 473

Query:   415 LQYRSARAREVLT 427
             LQ+RS+RAREVLT
Sbjct:   474 LQHRSSRAREVLT 486




GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00030306001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (504 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 2e-77
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information
 Score =  243 bits (623), Expect = 2e-77
 Identities = 93/329 (28%), Positives = 151/329 (45%), Gaps = 25/329 (7%)

Query: 95  FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 154
              + F     +  L +I +  R+   + +L+ A   V   P +  V  +    +  ++ 
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 155 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 199
           +W      +  S     ++GG               LL+ L   LFWT  V+    HV +
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 200 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 259
           +G+V            +MP  P + S + A+T S GSIC+GSL  A I+ +R  +  +R 
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178

Query: 260 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 314
           K+  ++      LLCC+      +E  V + N+ AYV IA+YGKGF  SA+D WEL +  
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238

Query: 315 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 371
           G+ ALV     G VL +G +    +TG  A  W     +  +    +  + A L+  ++ 
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298

Query: 372 GLAMVVVESAVTSIYICYAEDPLLIHRWD 400
            + M V ES V +I++C+AEDP L+    
Sbjct: 299 SVFMSVYESGVDTIFVCFAEDPELLRNDG 327


This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=8.8e-70  Score=570.06  Aligned_cols=381  Identities=30%  Similarity=0.490  Sum_probs=324.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh-------h---------------h---
Q 013512           39 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D---------------Q---   93 (441)
Q Consensus        39 ~~~~il~~~~~ia~vls~~~l~llr~~~~~~vw~~i~~~~~~~~~~~~~~~~~-------~---------------~---   93 (441)
                      .+|+.++..++++.+++.+++.++|.+++.++|..+.+..+.++.....+++.       +               +   
T Consensus       147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~  226 (577)
T KOG1362|consen  147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL  226 (577)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence            46889999999999999999999999999999988654433333222222221       0               0   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhcceecc-----
Q 013512           94 -FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD-----  167 (441)
Q Consensus        94 -~~~~iv~~i~~~i~~l~~~~~r~rI~~a~~llk~A~~~i~~~p~l~~~p~~~~~~~~~~~~~w~~~~~g~~~~~-----  167 (441)
                       ...||+++++.++.+++.+..|+||+++++++|+|+|++.+.|++.+.|+.+.++..+|..+|+.+..+..+.+     
T Consensus       227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g  306 (577)
T KOG1362|consen  227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG  306 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence             23689999999999999999999999999999999999999999999999999999999999998766554443     


Q ss_pred             -----cCCCchhHHHHHHHHH-HHHHHHHHhhcccceeeeeeeEEeeecCCCCCCCCCchHHHHHHHHHhhchhhHHHHH
Q 013512          168 -----MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGS  241 (441)
Q Consensus       168 -----~~~~~~~~~~~~~lf~-~~W~~~fi~~~~~~tvAg~v~~WYF~~~~~~~~~~~~~v~~s~~ra~~yhlGSia~GS  241 (441)
                           .+++....+..++++. ++|+++|+.|++|+++||++++|||++++  +++|..|+..|++|+++||+||+|+||
T Consensus       307 g~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GS  384 (577)
T KOG1362|consen  307 GCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGS  384 (577)
T ss_pred             CceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhh
Confidence                 2222222223333443 99999999999999999999999999986  789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCC--c---hhHHHHHHHHHHHHHHHHHhhchhhhhhHhhcCCchhHhHHHHHHHHHhccc
Q 013512          242 LFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV  316 (441)
Q Consensus       242 Livaiv~~lr~il~~l~~~~~~--~---~~l~cc~~c~l~~~e~~l~~in~~Ayi~iAi~G~~F~~Sak~a~~Li~~n~~  316 (441)
                      |++++++++|.++||+|+|+|+  |   ++++||++||+||+|+++|++|||||+++|+|||+||+|||++|++++|| .
T Consensus       385 liv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v  463 (577)
T KOG1362|consen  385 LLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-V  463 (577)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-H
Confidence            9999999999999999998874  3   58999999999999999999999999999999999999999999999999 5


Q ss_pred             ceeeecchhhHHHH-HHHHHHHHHHHhhhhHHHHhhcCC--chhHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhcc
Q 013512          317 EALVAYDCSGAVLL-MGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAED  392 (441)
Q Consensus       317 ~~~~~~~~~~~~L~-lgk~~v~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~i~-~~v~~~f~~v~~~~vdTifvCf~eD  392 (441)
                      ..+++.|.++++++ +||++++. ++.+++++.+..+++  +.+.+.+.++++| |+++++|+++++|+|||+|+||+||
T Consensus       464 ~~vv~~d~vs~~llflgk~l~~~-~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD  542 (577)
T KOG1362|consen  464 LRVVDVDLVSDFLLFLGKLLGAI-GSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAED  542 (577)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEec
Confidence            55799999999876 57765544 444577766666777  6778888999999 9999999999999999999999999


Q ss_pred             chhhccCChhHHHHHHHHHHHHHHhccccccc
Q 013512          393 PLLIHRWDAEFFNQMSETLHQRLQYRSARARE  424 (441)
Q Consensus       393 ~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~~  424 (441)
                      ||.||++ ||+|++|++.+++..+++++.+++
T Consensus       543 ~e~n~gs-~~~p~~~~~~l~~~~~~~~~~~~~  573 (577)
T KOG1362|consen  543 PESNDGS-PEKPQFMSEQLLEILGRSNKAPRV  573 (577)
T ss_pred             HhhcCCC-CCcceeeeHHHHHhcccccccchh
Confidence            9999999 899999999999999998764433



>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00