Citrus Sinensis ID: 013524

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEEVAAGQEKKEKKKKKSKKADDERTNGSVEAENEESVKKEKKKRKKQVAEAGGENVEAGEKKKKKRKHSEVNEEESEVPSKKEKKKKKKNDD
ccHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccHHHHHHccccc
cHHHHHHHHHHHHHHccccHccHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHccHccHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHcccccHHccHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccc
MELMRGVRSQLTELISglagqdlqpmslglshslsryklkfsaDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMgdrsnaakldfseiLPEEVEAQLKEAAMISMgtevsdldlLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHggsllnlakqpgstvQILGAEKALFRALKtkhatpkygliYHASlvgqaapkhkgkisrSLASKTALAIRYDalgdgqdnsmgleNRAKLEARLRNLEGKelgraagsakgkpkievydkdrkkgpgaMITAAKTYNPAADSILGLMEnaaskddeekpmEEVAAGQEKKEKKKKkskkaddertngsveaeneeSVKKEKKKRKKQVAEAggenveagekkkkkrkhsevneeesevpskkekkkkkkndd
MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDAlgdgqdnsmglENRAKLEARLRNLEgkelgraagsakgkpkievydkdrkkgpGAMITAAKTYNPAADSILGLMENaaskddeeKPMEevaagqekkekkkkkskkaddertngsveaeneesvkkekkkrkkqvaeaggenveagekkkkkrkhsevneeesevpskkekkkkkkndd
MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEEVAAGQekkekkkkkskkADDERTNGSveaeneesvkkekkkrkkqvaeaggenveagekkkkkrkhsevneeesevpskkekkkkkknDD
***************************LGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQA***************TALAIRYDA***********************************************************************************************************************************************************************************
MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYK***SADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLD***IL***V*****************DLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGA**************PKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRN************************************************************************************************************************************************************
********SQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVG*************LASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELG***********IEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAA*****************************************************************************************************
MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRA******K********************************************************************************************************************************************
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MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEEVAAGQEKKEKKKKKSKKADDERTNGSVEAENEESVKKEKKKRKKQVAEAGGENVEAGEKKKKKRKHSEVNEEESEVPSKKEKKKKKKNDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q9MAB3533 Probable nucleolar protei yes no 0.757 0.626 0.874 1e-175
O04658533 Probable nucleolar protei no no 0.755 0.624 0.873 1e-173
Q9Y2X3529 Nucleolar protein 58 OS=H yes no 0.732 0.610 0.641 1e-125
Q4R779530 Nucleolar protein 58 OS=M N/A no 0.732 0.609 0.641 1e-124
O04656450 Putative nucleolar protei no no 0.696 0.682 0.709 1e-123
Q6DFW4536 Nucleolar protein 58 OS=M yes no 0.732 0.602 0.638 1e-123
Q9QZ86534 Nucleolar protein 58 OS=R yes no 0.732 0.604 0.638 1e-122
Q4PBF2582 Nucleolar protein 58 OS=U N/A no 0.734 0.556 0.615 1e-117
P0CP26568 Nucleolar protein 58 OS=C yes no 0.734 0.570 0.611 1e-117
P0CP27565 Nucleolar protein 58 OS=C N/A no 0.734 0.573 0.611 1e-116
>sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  613 bits (1581), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 292/334 (87%), Positives = 317/334 (94%)

Query: 1   MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDL 60
           MEL+RGVRSQ TELISGL  QDL PMSLGLSHSL+RYKLKFS+DKVDTMIIQAIGLLDDL
Sbjct: 112 MELLRGVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDL 171

Query: 61  DKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEA 120
           DKELNTYAMRVREWYGWHFPELAKII DNILYAK+VKLMG+R NAAKLDFSEIL +E+EA
Sbjct: 172 DKELNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKLDFSEILADEIEA 231

Query: 121 QLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGE 180
            LK+AA+ISMGTEVSDLDLL+I+ELCDQVLSL+EYRAQLYDYLKSRMNT+APNLTALVGE
Sbjct: 232 DLKDAAVISMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGE 291

Query: 181 LVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAP 240
           LVGARLI+HGGSLLNL+KQPGSTVQILGAEKALFRALKTKHATPKYGLI+HASLVGQAAP
Sbjct: 292 LVGARLISHGGSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAP 351

Query: 241 KHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKG 300
           KHKGKISRSLA+KT LAIR DALGD QDN+MGLENRAKLEARLRNLEGK+LGR +GS+KG
Sbjct: 352 KHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGKDLGRLSGSSKG 411

Query: 301 KPKIEVYDKDRKKGPGAMITAAKTYNPAADSILG 334
           KPKIEVY+KD+K G G +IT AKTYN AADS+LG
Sbjct: 412 KPKIEVYNKDKKMGSGGLITPAKTYNTAADSLLG 445
Required for 60S ribosomal subunit biogenesis.
Arabidopsis thaliana (taxid: 3702)
>sp|O04658|NOP5A_ARATH Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y2X3|NOP58_HUMAN Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1 Back     alignment and function description
>sp|Q4R779|NOP58_MACFA Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1 Back     alignment and function description
>sp|O04656|NOP5C_ARATH Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2 Back     alignment and function description
>sp|Q6DFW4|NOP58_MOUSE Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZ86|NOP58_RAT Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58 PE=1 SV=1 Back     alignment and function description
>sp|Q4PBF2|NOP58_USTMA Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|P0CP26|NOP58_CRYNJ Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|P0CP27|NOP58_CRYNB Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NOP58 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
359487861 573 PREDICTED: probable nucleolar protein 5- 0.784 0.603 0.919 0.0
298204937474 unnamed protein product [Vitis vinifera] 0.784 0.729 0.919 0.0
147788189472 hypothetical protein VITISV_038844 [Viti 0.784 0.733 0.916 0.0
99646745 572 matrix attachment region binding protein 0.757 0.583 0.925 0.0
13623892 555 MAR-binding protein [Nicotiana tabacum] 0.766 0.609 0.902 1e-180
356538739 551 PREDICTED: probable nucleolar protein 5- 0.789 0.631 0.870 1e-180
356545126 556 PREDICTED: probable nucleolar protein 5- 0.789 0.625 0.870 1e-179
224125484 561 predicted protein [Populus trichocarpa] 0.775 0.609 0.880 1e-178
255585026 558 nucleolar protein nop56, putative [Ricin 0.972 0.768 0.784 1e-177
449442889 544 PREDICTED: probable nucleolar protein 5- 0.757 0.613 0.901 1e-176
>gi|359487861|ref|XP_002273273.2| PREDICTED: probable nucleolar protein 5-2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/346 (91%), Positives = 338/346 (97%)

Query: 1   MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDL 60
           MELMRGVRSQLTELISGLA QDL PMSLGLSHSLSRYKLKFS DKVDTMIIQAIGLLDDL
Sbjct: 111 MELMRGVRSQLTELISGLAVQDLAPMSLGLSHSLSRYKLKFSPDKVDTMIIQAIGLLDDL 170

Query: 61  DKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEA 120
           DKELNTYAMRVREWYGWHFPELAKI+QDNILYAKAVKLMG+R+NAAKLDFSEILPEEVE 
Sbjct: 171 DKELNTYAMRVREWYGWHFPELAKIVQDNILYAKAVKLMGNRTNAAKLDFSEILPEEVET 230

Query: 121 QLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGE 180
           +LKEAAMISMGTEVSDLDL+NIKELCDQVLSL+EYRAQLYDYLKSRMNT+APNLTALVGE
Sbjct: 231 ELKEAAMISMGTEVSDLDLMNIKELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGE 290

Query: 181 LVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAP 240
           LVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASL+GQAAP
Sbjct: 291 LVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAP 350

Query: 241 KHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKG 300
           K KGKISRSLA+KTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEG+ELG +AGSAKG
Sbjct: 351 KLKGKISRSLAAKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGRELGHSAGSAKG 410

Query: 301 KPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEE 346
           KPKIEVYDKDRKKG GA+ITAAKTYNPAADS+LG +E++A++++EE
Sbjct: 411 KPKIEVYDKDRKKGSGALITAAKTYNPAADSVLGRIEDSAAREEEE 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|298204937|emb|CBI34244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147788189|emb|CAN73717.1| hypothetical protein VITISV_038844 [Vitis vinifera] Back     alignment and taxonomy information
>gi|99646745|emb|CAK22424.1| matrix attachment region binding protein [Beta vulgaris] Back     alignment and taxonomy information
>gi|13623892|dbj|BAB41076.1| MAR-binding protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356538739|ref|XP_003537858.1| PREDICTED: probable nucleolar protein 5-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356545126|ref|XP_003540996.1| PREDICTED: probable nucleolar protein 5-2-like [Glycine max] Back     alignment and taxonomy information
>gi|224125484|ref|XP_002319598.1| predicted protein [Populus trichocarpa] gi|222857974|gb|EEE95521.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255585026|ref|XP_002533223.1| nucleolar protein nop56, putative [Ricinus communis] gi|223526966|gb|EEF29163.1| nucleolar protein nop56, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449442889|ref|XP_004139213.1| PREDICTED: probable nucleolar protein 5-2-like isoform 2 [Cucumis sativus] gi|449482922|ref|XP_004156444.1| PREDICTED: probable nucleolar protein 5-2-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2096214533 AT3G05060 "AT3G05060" [Arabido 0.791 0.654 0.840 1.1e-153
TAIR|locus:2181211533 AT5G27120 "AT5G27120" [Arabido 0.755 0.624 0.873 2.5e-152
UNIPROTKB|F1N218529 NOP58 "Uncharacterized protein 0.732 0.610 0.641 3.4e-109
UNIPROTKB|Q9Y2X3529 NOP58 "Nucleolar protein 58" [ 0.732 0.610 0.641 4.3e-109
UNIPROTKB|E1BUS2527 NOP58 "Uncharacterized protein 0.773 0.647 0.629 7e-109
MGI|MGI:1933184536 Nop58 "NOP58 ribonucleoprotein 0.770 0.634 0.613 3.9e-108
RGD|620484534 Nop58 "NOP58 ribonucleoprotein 0.770 0.636 0.613 1.3e-107
POMBASE|SPAC23G3.06508 SPAC23G3.06 "U3 snoRNP protein 0.657 0.570 0.715 1.5e-106
UNIPROTKB|I3LDD2416 NOP58 "Uncharacterized protein 0.684 0.725 0.675 1.1e-105
SGD|S000005837511 NOP58 "Protein involved in pre 0.766 0.661 0.575 4.2e-102
TAIR|locus:2096214 AT3G05060 "AT3G05060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
 Identities = 295/351 (84%), Positives = 325/351 (92%)

Query:     1 MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDL 60
             MEL+RGVRSQ TELISGL  QDL PMSLGLSHSL+RYKLKFS+DKVDTMIIQAIGLLDDL
Sbjct:   112 MELLRGVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDL 171

Query:    61 DKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEA 120
             DKELNTYAMRVREWYGWHFPELAKII DNILYAK+VKLMG+R NAAKLDFSEIL +E+EA
Sbjct:   172 DKELNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKLDFSEILADEIEA 231

Query:   121 QLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGE 180
              LK+AA+ISMGTEVSDLDLL+I+ELCDQVLSL+EYRAQLYDYLKSRMNT+APNLTALVGE
Sbjct:   232 DLKDAAVISMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGE 291

Query:   181 LVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAP 240
             LVGARLI+HGGSLLNL+KQPGSTVQILGAEKALFRALKTKHATPKYGLI+HASLVGQAAP
Sbjct:   292 LVGARLISHGGSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAP 351

Query:   241 KHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKG 300
             KHKGKISRSLA+KT LAIR DALGD QDN+MGLENRAKLEARLRNLEGK+LGR +GS+KG
Sbjct:   352 KHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGKDLGRLSGSSKG 411

Query:   301 KPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEE 351
             KPKIEVY+KD+K G G +IT AKTYN AADS+LG  E +A  ++  K  ++
Sbjct:   412 KPKIEVYNKDKKMGSGGLITPAKTYNTAADSLLG--ETSAKSEEPSKKKDK 460
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2181211 AT5G27120 "AT5G27120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N218 NOP58 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2X3 NOP58 "Nucleolar protein 58" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUS2 NOP58 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1933184 Nop58 "NOP58 ribonucleoprotein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620484 Nop58 "NOP58 ribonucleoprotein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPAC23G3.06 SPAC23G3.06 "U3 snoRNP protein Nop58 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDD2 NOP58 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
SGD|S000005837 NOP58 "Protein involved in pre-rRNA processing" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DFW4NOP58_MOUSENo assigned EC number0.63850.73240.6026yesno
Q6BIX6NOP58_DEBHANo assigned EC number0.61580.70970.6054yesno
Q9QZ86NOP58_RATNo assigned EC number0.63850.73240.6048yesno
Q9Y2X3NOP58_HUMANNo assigned EC number0.64150.73240.6105yesno
Q12499NOP58_YEASTNo assigned EC number0.58850.72100.6223yesno
Q9P7S7NOP58_SCHPONo assigned EC number0.56250.74370.6456yesno
Q9MAB3NOP5B_ARATHNo assigned EC number0.87420.75730.6266yesno
Q6CKR8NOP58_KLULANo assigned EC number0.61370.72330.6242yesno
Q6CG46NOP58_YARLINo assigned EC number0.61370.73010.6252yesno
A3LUT0NOP58_PICSTNo assigned EC number0.58750.75730.6485yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031075001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
•  •• • 0.987
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •• • 0.932
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •• • 0.897
GSVIVG00018638001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)
   •• • 0.876
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   •• • 0.868
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •• • 0.850
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •• • 0.844
GSVIVG00025475001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (188 aa)
   •• • 0.841
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •• • 0.835
GSVIVG00007719001
SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)
   •• • 0.828

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 1e-107
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 4e-76
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 2e-68
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 6e-29
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 2e-27
pfam10243 506 pfam10243, MIP-T3, Microtubule-binding protein MIP 4e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-05
PTZ00053 470 PTZ00053, PTZ00053, methionine aminopeptidase 2; P 4e-04
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 6e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
pfam04615 728 pfam04615, Utp14, Utp14 protein 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.002
PLN02967 581 PLN02967, PLN02967, kinase 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
pfam00183 529 pfam00183, HSP90, Hsp90 protein 0.004
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  322 bits (828), Expect = e-107
 Identities = 148/318 (46%), Positives = 198/318 (62%), Gaps = 8/318 (2%)

Query: 3   LMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDK 62
           L       L EL S     D   M LGL H LSR K++   DK D +IIQAI  LDD+DK
Sbjct: 72  LRENAEEALGELSSSDED-DYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDK 130

Query: 63  ELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAK---LDFSEILPEEVE 119
           E+N  AMR+REWYGWHFPEL+ ++ DN  YAK V  +G+R N  K    D    LP+   
Sbjct: 131 EINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNRENINKESLKDLGFALPDIAI 190

Query: 120 AQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVG 179
            ++ EAA  SMG ++S+ D+ NI+EL + +L L E R QL +Y++S+M+ +APNLTALVG
Sbjct: 191 -KIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSEIAPNLTALVG 249

Query: 180 ELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAA 239
            ++GARLI+H G L  LAK P ST+Q+LGAEKALFRALKT   TPKYG+IY + L+ ++ 
Sbjct: 250 PVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSP 309

Query: 240 PKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAK 299
           P  +GKI+R+LA+K A+A R DA     D   G+  R +LE R+  L+ K       +  
Sbjct: 310 PWQRGKIARALAAKLAIAARIDAFSGEPD---GISLREELEKRIEKLKEKPPKPPTKAKP 366

Query: 300 GKPKIEVYDKDRKKGPGA 317
            + K E   + R+K    
Sbjct: 367 ERDKKERPGRYRRKKKEK 384

Length = 395
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|215521 PLN02967, PLN02967, kinase Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
KOG2572498 consensus Ribosome biogenesis protein - Nop58p/Nop 100.0
KOG2573498 consensus Ribosome biogenesis protein - Nop56p/Sik 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
KOG2574492 consensus mRNA splicing factor PRP31 [RNA processi 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.89
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-116  Score=882.64  Aligned_cols=324  Identities=76%  Similarity=1.091  Sum_probs=310.3

Q ss_pred             ChhHHHHHhhHHHHhcCCCCCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013524            1 MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFP   80 (441)
Q Consensus         1 ~el~R~iR~~~~~l~~~~~~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFP   80 (441)
                      +||+||||+|+++||+|+.++||.+|+|||+|+++||||+|+||+|||||||||+||||||+|||+|+||||||||||||
T Consensus       111 ~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFP  190 (498)
T KOG2572|consen  111 MELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFP  190 (498)
T ss_pred             HHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhcCcHHHHHHHHHhcCCCCCccccccccCCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013524           81 ELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLY  160 (441)
Q Consensus        81 EL~~iv~d~~~YakvV~~ignr~n~~~~dLs~iL~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~  160 (441)
                      ||.+||.||+.|+++|+.||+|.|+...||++|||++++..+..+|.+||||+|++.|+.+|..+|+||+++.+||.||+
T Consensus       191 EL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~  270 (498)
T KOG2572|consen  191 ELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLI  270 (498)
T ss_pred             HHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCc
Q 013524          161 DYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAP  240 (441)
Q Consensus       161 ~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~  240 (441)
                      +||++||..||||||+|||++||||||+|||||.|||++|+||||||||||||||+|+|+++||+||+||||+||+|+||
T Consensus       271 dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~p  350 (498)
T KOG2572|consen  271 DYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASP  350 (498)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccccccccCCCCcccc
Q 013524          241 KHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMIT  320 (441)
Q Consensus       241 ~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~~~~~~~~~~~~~~~~~~~~~kk~~a~~~~~  320 (441)
                      +++|||+|+||+|++||+|+|+|+++.++.+|.+.|.+||+||+.|+++.+++.++.+++.+....|....      ...
T Consensus       351 KnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l~~~s~~~k~~~K~~~ye~~~------~~~  424 (498)
T KOG2572|consen  351 KNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDLQESSILKKPLAKKEKYEGRS------ETT  424 (498)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCcccccccccchhHHHHhcccc------ccC
Confidence            99999999999999999999999999999999999999999999999999998888888878777776311      124


Q ss_pred             cccccCCccc
Q 013524          321 AAKTYNPAAD  330 (441)
Q Consensus       321 ~~~~~~~~~d  330 (441)
                      .+.+|++..|
T Consensus       425 ~adt~~~~~~  434 (498)
T KOG2572|consen  425 SADTYNTIRD  434 (498)
T ss_pred             cccccccccc
Confidence            4455555555

>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
3nmu_A379 Crystal Structure Of Substrate-Bound Halfmer Box CD 7e-44
2nnw_A376 Alternative Conformations Of Nop56/58-fibrillarin C 1e-43
3nvk_A376 Structural Basis For Substrate Placement By An Arch 2e-43
3id5_A388 Crystal Structure Of Sulfolobus Solfataricus CD RNP 3e-41
3nvm_A371 Structural Basis For Substrate Placement By An Arch 9e-40
3icx_A255 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 4e-39
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 3e-26
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 3e-26
3gqu_A169 Pyrococcus Horikoshii Nop5 Rna Binding Domain Lengt 1e-22
3id6_A268 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 3e-18
1nt2_B258 Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt 2e-09
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 379 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 4/258 (1%)
Query: 33  SLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILY 92
           +L+R +++  +   D M+IQAI  LDD+DK +N    R+REWY  HFPEL +++  +  Y
Sbjct: 124 ALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQY 183
Query: 93  AKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLS 151
              VK +G R N  +    E+ L EE   ++ EA   +MG  +   D+  +++L +++  
Sbjct: 184 VAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDR 243
Query: 152 LAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEK 211
           L + R +L DY+   M+ VAPNL ALVG  + ARLI+  G L  LA  P ST+Q+LGAEK
Sbjct: 244 LYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEK 303
Query: 212 ALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSM 271
           ALFR L+T    PK+G+IY    + ++    +GKI+R+LA K A+A R D         +
Sbjct: 304 ALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS---GEYI 360
Query: 272 GLENRAKLEARLRNLEGK 289
             E + +LEAR+R ++ K
Sbjct: 361 AEELKKELEARIREIKEK 378
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 376 Back     alignment and structure
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 376 Back     alignment and structure
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 388 Back     alignment and structure
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 371 Back     alignment and structure
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (135-380) Length = 255 Back     alignment and structure
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain Length = 169 Back     alignment and structure
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262) And Fibrillarin Complex Length = 268 Back     alignment and structure
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
Probab=100.00  E-value=4.8e-99  Score=766.61  Aligned_cols=286  Identities=38%  Similarity=0.586  Sum_probs=278.2

Q ss_pred             hhHHHHHhhHHHHhc--CCC--CCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013524            2 ELMRGVRSQLTELIS--GLA--GQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGW   77 (441)
Q Consensus         2 el~R~iR~~~~~l~~--~~~--~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~   77 (441)
                      .++|+||.|+.+|+.  |+.  +.|+..|.+||+|++||+||+|+++++|+||||||++||+||+|||+|||||||||||
T Consensus        88 ~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~  167 (388)
T 3pla_A           88 KVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSI  167 (388)
T ss_dssp             HHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999996  666  7799999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhcCcHHHHHHHHHhcCCCCCcccccccc-CCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013524           78 HFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYR  156 (441)
Q Consensus        78 hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~i-L~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R  156 (441)
                      |||||++||+||++|+++|+.||||.|++..+|+++ +|+++++.|.++|++|||++||++|+.+|..+|++|++|+++|
T Consensus       168 hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~l~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R  247 (388)
T 3pla_A          168 HFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIR  247 (388)
T ss_dssp             TCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhhcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccc
Q 013524          157 AQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVG  236 (441)
Q Consensus       157 ~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~  236 (441)
                      ++|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||||||||+||+||+|+++||||||||||++|+
T Consensus       248 ~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~  327 (388)
T 3pla_A          248 RNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIH  327 (388)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHH
T ss_pred             HHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCC
Q 013524          237 QAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKE  290 (441)
Q Consensus       237 ~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~  290 (441)
                      ++||++||||+|+||+|||||||||+|+++   .+|.++|++|++||++|+++.
T Consensus       328 ~ap~~~rgKiaR~LAaK~aLAARiD~~~g~---~~G~~lreeie~ri~kl~e~~  378 (388)
T 3pla_A          328 TSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLKKRIDEIKEKF  378 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHTCCC---CCHHHHHHHHHHHHHHHHCC-
T ss_pred             hCCHHHhHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999853   579999999999999999864
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 441
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 1e-109
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 6e-59
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  320 bits (822), Expect = e-109
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 49  MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAK- 107
           +I+ A  L  +++ ELN     +R+ Y   FPEL  ++ + + Y + VK +G+  +  K 
Sbjct: 8   VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 67

Query: 108 -LDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSR 166
             +  +IL       +   A  + G ++S+ +L  ++E CD  L L   + ++Y+Y++SR
Sbjct: 68  NENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESR 127

Query: 167 MNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKY 226
           M+ +APNL+ ++G    A+++   G L NL+K P   + +LGA++       +    P  
Sbjct: 128 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 187

Query: 227 GLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNL 286
           G IYH+ +V    P  + K +R +A+K  LA R D+  +  +  +G E + ++E +    
Sbjct: 188 GYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKW 247

Query: 287 E 287
           +
Sbjct: 248 Q 248
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-87  Score=643.15  Aligned_cols=244  Identities=27%  Similarity=0.519  Sum_probs=229.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcCCCCCcc--ccccccCCHHHHHHH
Q 013524           45 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAK--LDFSEILPEEVEAQL  122 (441)
Q Consensus        45 k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ignr~n~~~--~dLs~iL~~e~~~~i  122 (441)
                      ...+||||||+++|+||+|||.|||||||||+||||||++||+||.+||++|+.|||+.+++.  .+|.++||+++++.|
T Consensus         4 pEy~lIvq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~~~~~l~~~l~~~~~~~i   83 (249)
T d2ozbb1           4 PEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVV   83 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGTSCHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCccccccchhHHHHhCCHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999998754  679999999999999


Q ss_pred             HHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCch
Q 013524          123 KEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGS  202 (441)
Q Consensus       123 ~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAS  202 (441)
                      .++|.+|||++|+++|+.+|..+|++|++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||+||||
T Consensus        84 ~~aa~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk~Pas  163 (249)
T d2ozbb1          84 SVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPAC  163 (249)
T ss_dssp             HHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTSCHH
T ss_pred             HHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHhCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHH
Q 013524          203 TVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEAR  282 (441)
Q Consensus       203 tIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~r  282 (441)
                      |||+|||+|++|+||++++.+|||||||||++|+++||++||||+|+||+|||||||||+|+++++|++|.+||++|+.|
T Consensus       164 tIq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~~~~~~~~~~G~~~r~~ie~k  243 (249)
T d2ozbb1         164 NIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERK  243 (249)
T ss_dssp             HHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhHcCCCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 013524          283 LRNLEG  288 (441)
Q Consensus       283 l~kl~~  288 (441)
                      |++|++
T Consensus       244 i~k~~E  249 (249)
T d2ozbb1         244 FDKWQE  249 (249)
T ss_dssp             HHHHCC
T ss_pred             HHHhcC
Confidence            999975
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure