Citrus Sinensis ID: 013529

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL
cEEEEEEEccEEEEEEEEcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEEEccccEEEEEccccccEEEEEcccccccccccccccEEccccccEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccEEEEccccccEEEEEEccEEEcHHHHHHccccEEEEcccccEEEEEEEccccccccEEEEEccccEEEEEEEEEEEcccEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccEEEEEEEcccccccccEEEccccccccccEEEEEcccEEEEEEccccccccccEEEEcccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEcccccccccccccccHHHHHHHHcc
cEEEEEEccccEEEEEEEEEcHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEEccccccEEEEEcccccEEEccEEccccccccccEcccccccccccEEEEEccccccEEEEEEEcccccEccccccccccccEEEcEEEcccEEEEccccEEEccHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccccHcccccEEEEEEEcccccEEEEEccccccccccccHHHcccccEEEEEEEccccccEEEEEEEEcccccccccEEEEccccEEEEEEEcccccccccEEEcccccccccccccEEEEEEEEccccccEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHccc
mlhglrikdgkAAYVSRYVKTSRLkqeeffggakftkigdvKGLFGLLMVNMTLLRESFKVLdfsygngagntaLIYHHGKLLvlseidkpyvlkvlkdgdlqtlgmldydkrlnhpftahpkidpytdemftfgytqtppyvtyrviskdgfmhdpvpitmsapimmhdfaITENYAIfldlpmcfrQKEMVKEnkliyafdptikarfgvlpryarddlqirwfelpncyifhnanaweeeEDEVVLITCrvrnpdldmfngplketleDQTTELYEMRFNMktglasqkklspacvdfprinehymgrkqryVYGSILENIAKVTGMIKfdlraepetgktklevggnvkgifdlgpgrfgseavfvprepsstseeddgylIFHVHDENTGKSAVYVIDAktmsadpvavielphrvpygfhgiFLSEEQLEELAKL
mlhglrikdgkaayvsryvktsrlkqeeffggakftkigdVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRnpdldmfngplketleDQTTELYEMRFNMKTglasqkklspACVDFPRINehymgrkqryvyGSILENIAKVTGMIKFDLRAEPetgktklevggnvKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL
MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL
********DGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA*********VVLITCRVRNPDLDMFNGPLKETL**QTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFV************GYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS**********
MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE*AK*
********DGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVP*********DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL
MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
O65572538 Carotenoid 9,10(9',10')-c yes no 0.981 0.804 0.780 0.0
Q8LP17541 Carotenoid 9,10(9',10')-c N/A no 0.997 0.813 0.752 0.0
Q84KG5546 Carotenoid 9,10(9',10')-c N/A no 0.986 0.796 0.775 0.0
Q94IR2543 Carotenoid 9,10(9',10')-c N/A no 0.997 0.810 0.750 0.0
O24592604 9-cis-epoxycarotenoid dio N/A no 0.947 0.692 0.367 1e-77
Q9M9F5657 9-cis-epoxycarotenoid dio no no 0.941 0.631 0.385 2e-75
Q9C6Z1589 Probable 9-cis-epoxycarot no no 0.938 0.702 0.365 5e-74
Q9LRR7599 9-cis-epoxycarotenoid dio no no 0.931 0.686 0.356 6e-72
O49675595 Probable carotenoid cleav no no 0.950 0.704 0.355 5e-70
Q9M6E8615 9-cis-epoxycarotenoid dio N/A no 0.941 0.674 0.334 3e-69
>sp|O65572|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2 Back     alignment and function desciption
 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/437 (78%), Positives = 384/437 (87%), Gaps = 4/437 (0%)

Query: 1   MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFK 60
           M+HG+RIKDGKA YVSRYVKTSRLKQEEFFG AKF KIGD+KG FGLLMVN+  LR   K
Sbjct: 102 MIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLK 161

Query: 61  VLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTA 120
           +LD +YGNG  NTAL+YHHGKLL L E DKPYV+KVL+DGDLQTLG++DYDKRL H FTA
Sbjct: 162 ILDNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTA 221

Query: 121 HPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIF 180
           HPK+DP T EMFTFGY+ TPPY+TYRVISKDG MHDPVPIT+S PIMMHDFAITE YAIF
Sbjct: 222 HPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIF 281

Query: 181 LDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAW 240
           +DLPM FR KEMVKE K+IY+FDPT KARFGVLPRYA+D+L IRWFELPNC+IFHNANAW
Sbjct: 282 MDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW 341

Query: 241 EEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVD 300
            EEEDEVVLITCR+ NPDLDM +G +KE LE+   ELYEMRFNMKTG ASQKKLS + VD
Sbjct: 342 -EEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTGSASQKKLSASAVD 400

Query: 301 FPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGP 360
           FPRINE Y G+KQRYVYG+IL++IAKVTG+IKFDL AE ETGK  LEVGGN+KGI+DLG 
Sbjct: 401 FPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGE 460

Query: 361 GRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHR 420
           GR+GSEA++VPRE   T+EEDDGYLIF VHDENTGKS V VIDAKTMSA+PVAV+ELPHR
Sbjct: 461 GRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHR 517

Query: 421 VPYGFHGIFLSEEQLEE 437
           VPYGFH +F++EEQL+E
Sbjct: 518 VPYGFHALFVTEEQLQE 534
Cleaves a variety of carotenoids symmetrically at both the 9-10 and 9'-10' double bonds. Active on beta,beta-carotene, lutein, zeaxanthin, all-trans-violaxanthin, 9-cis-violaxanthin and 9'-cis-neoxanthin. With most substrates, the carotenoid is symmetrically cleaved. Probably not involved in abscisic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4
>sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q84KG5|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1 Back     alignment and function description
>sp|Q94IR2|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1 Back     alignment and function description
>sp|O24592|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2 Back     alignment and function description
>sp|Q9M9F5|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6Z1|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1 Back     alignment and function description
>sp|O49675|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1 Back     alignment and function description
>sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
163881523 552 carotenoid cleavage dioxygenase 1 [Rosa 0.997 0.797 0.775 0.0
134285450 548 9-cis-epoxycarotenoid dioxygenase [Casta 0.997 0.802 0.786 0.0
449436307 547 PREDICTED: carotenoid 9,10(9',10')-cleav 0.997 0.804 0.775 0.0
307592509 552 carotenoid cleavage dioxygenase 1 [Manih 0.997 0.797 0.780 0.0
225450111 546 PREDICTED: carotenoid 9,10(9',10')-cleav 0.997 0.805 0.782 0.0
61654494 542 9,10[9',10']carotenoid cleavage dioxygen 0.997 0.811 0.782 0.0
387763758 546 carotenoid cleavage dioxygenase 1 [Vitis 0.997 0.805 0.782 0.0
387763760 546 carotenoid cleavage dioxygenase 1 [Vitis 0.997 0.805 0.782 0.0
408794951 547 carotenoid cleavage dioxygenase 1 [Momor 0.997 0.804 0.773 0.0
82548252 543 carotenoid cleavage dioxygenase [Cucumis 0.997 0.810 0.770 0.0
>gi|163881523|gb|ABY47994.1| carotenoid cleavage dioxygenase 1 [Rosa x damascena] Back     alignment and taxonomy information
 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/441 (77%), Positives = 392/441 (88%), Gaps = 1/441 (0%)

Query: 1   MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFK 60
           M+HG+RIKDGKA YVSRYVKTSRLKQEE+FGGAKF K+GD+KGLFGLLMV M  LR   K
Sbjct: 113 MIHGMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKVGDLKGLFGLLMVYMQQLRAKLK 172

Query: 61  VLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTA 120
           VLD SYG+G GNTA +YHHGKLL LSE DKPYVLKVL+DGDLQT+G+LDYDKRL H FTA
Sbjct: 173 VLDLSYGHGTGNTAFVYHHGKLLALSEGDKPYVLKVLEDGDLQTVGLLDYDKRLKHSFTA 232

Query: 121 HPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIF 180
           HPK+DP+T EMFTFGY+  PPYVTYRVISKDGFMHDP+PIT+ AP+MMHDFAITENYAIF
Sbjct: 233 HPKVDPFTGEMFTFGYSHDPPYVTYRVISKDGFMHDPIPITVPAPVMMHDFAITENYAIF 292

Query: 181 LDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAW 240
           +DLP+ FR KEMVKE KLI++FD T KARFGVLPRYA+DDL IRWFELPNC+IFHNANAW
Sbjct: 293 MDLPLYFRPKEMVKEGKLIFSFDETKKARFGVLPRYAKDDLLIRWFELPNCFIFHNANAW 352

Query: 241 EEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVD 300
            EEEDEVVL+TCR+ NPDLDM NGP+K+ L++   ELYEMRFN+KTGLA+QKKLS + VD
Sbjct: 353 -EEEDEVVLMTCRLENPDLDMVNGPIKKKLDNFKNELYEMRFNLKTGLATQKKLSESAVD 411

Query: 301 FPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGP 360
           FPR+NE Y GRKQRYVYG+ L++IAKVTG++KFDL A PE GKTK+EVGGNV+G++DLGP
Sbjct: 412 FPRVNESYTGRKQRYVYGTTLDSIAKVTGIVKFDLHAAPEIGKTKIEVGGNVQGLYDLGP 471

Query: 361 GRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHR 420
           GRFGSEA+FVPR P  TSEEDDGYLIF VHDENTGKSA++V+DAKTMS DPVA++ELPHR
Sbjct: 472 GRFGSEAIFVPRVPGITSEEDDGYLIFFVHDENTGKSAIHVLDAKTMSGDPVAIVELPHR 531

Query: 421 VPYGFHGIFLSEEQLEELAKL 441
           VPYGFH  F++EEQL+E AK 
Sbjct: 532 VPYGFHAFFVTEEQLQEQAKF 552

Source: Rosa x damascena

Species: Rosa x damascena

Genus: Rosa

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|134285450|gb|ABO69703.1| 9-cis-epoxycarotenoid dioxygenase [Castanea mollissima] Back     alignment and taxonomy information
>gi|449436307|ref|XP_004135934.1| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307592509|gb|ADN65332.1| carotenoid cleavage dioxygenase 1 [Manihot esculenta] Back     alignment and taxonomy information
>gi|225450111|ref|XP_002278750.1| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Vitis vinifera] gi|297736256|emb|CBI24894.3| unnamed protein product [Vitis vinifera] gi|387763762|gb|AFJ94679.1| carotenoid cleavage dioxygenase 1 [Vitis vinifera] gi|387763766|gb|AFJ94681.1| carotenoid cleavage dioxygenase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|61654494|gb|AAX48772.1| 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|387763758|gb|AFJ94677.1| carotenoid cleavage dioxygenase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|387763760|gb|AFJ94678.1| carotenoid cleavage dioxygenase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|408794951|gb|AFU91489.1| carotenoid cleavage dioxygenase 1 [Momordica charantia] Back     alignment and taxonomy information
>gi|82548252|gb|ABB82946.1| carotenoid cleavage dioxygenase [Cucumis melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2087418538 CCD1 "carotenoid cleavage diox 0.981 0.804 0.780 6.9e-189
TAIR|locus:2202492589 NCED5 "nine-cis-epoxycarotenoi 0.934 0.699 0.374 2.6e-70
TAIR|locus:2134796595 NCED4 "nine-cis-epoxycarotenoi 0.950 0.704 0.357 1.9e-67
TAIR|locus:2091652599 NCED3 "nine-cis-epoxycarotenoi 0.879 0.647 0.351 5.2e-65
TAIR|locus:2124489583 NCED2 "nine-cis-epoxycarotenoi 0.947 0.716 0.352 2.9e-64
TAIR|locus:2032085657 NCED9 "nine-cis-epoxycarotenoi 0.798 0.535 0.375 5.1e-58
TAIR|locus:2093751577 NCED6 "nine-cis-epoxycarotenoi 0.873 0.667 0.342 1.1e-55
UNIPROTKB|O06785501 MT0683 "Carotenoid cleavage ox 0.496 0.437 0.304 9.2e-37
UNIPROTKB|Q53353485 Q53353 "Lignostilbene-alpha,be 0.802 0.729 0.288 4.2e-31
UNIPROTKB|Q52008490 lsdB "Lignostilbene-alpha,beta 0.922 0.830 0.277 7.6e-30
TAIR|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1831 (649.6 bits), Expect = 6.9e-189, P = 6.9e-189
 Identities = 341/437 (78%), Positives = 384/437 (87%)

Query:     1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFK 60
             M+HG+RIKDGKA YVSRYVKTSRLKQEEFFG AKF KIGD+KG FGLLMVN+  LR   K
Sbjct:   102 MIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLK 161

Query:    61 VLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTA 120
             +LD +YGNG  NTAL+YHHGKLL L E DKPYV+KVL+DGDLQTLG++DYDKRL H FTA
Sbjct:   162 ILDNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTA 221

Query:   121 HPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIF 180
             HPK+DP T EMFTFGY+ TPPY+TYRVISKDG MHDPVPIT+S PIMMHDFAITE YAIF
Sbjct:   222 HPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIF 281

Query:   181 LDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAW 240
             +DLPM FR KEMVKE K+IY+FDPT KARFGVLPRYA+D+L IRWFELPNC+IFHNANAW
Sbjct:   282 MDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW 341

Query:   241 EEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVD 300
             EEE DEVVLITCR+ NPDLDM +G +KE LE+   ELYEMRFNMKTG ASQKKLS + VD
Sbjct:   342 EEE-DEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTGSASQKKLSASAVD 400

Query:   301 FPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGP 360
             FPRINE Y G+KQRYVYG+IL++IAKVTG+IKFDL AE ETGK  LEVGGN+KGI+DLG 
Sbjct:   401 FPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGE 460

Query:   361 GRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHR 420
             GR+GSEA++VPRE   T+EEDDGYLIF VHDENTGKS V VIDAKTMSA+PVAV+ELPHR
Sbjct:   461 GRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHR 517

Query:   421 VPYGFHGIFLSEEQLEE 437
             VPYGFH +F++EEQL+E
Sbjct:   518 VPYGFHALFVTEEQLQE 534
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0016118 "carotenoid catabolic process" evidence=IDA
GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0016121 "carotene catabolic process" evidence=IMP
GO:0016124 "xanthophyll catabolic process" evidence=IMP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0044242 "cellular lipid catabolic process" evidence=RCA
TAIR|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)] Back     alignment and assigned GO terms
UNIPROTKB|Q52008 lsdB "Lignostilbene-alpha,beta-dioxygenase isozyme III" [Sphingomonas paucimobilis (taxid:13689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84KG5CCD_CROSA1, ., 1, 4, ., 9, 9, ., n, 40.77520.98630.7967N/Ano
Q8LP17CCD1_PEA1, ., 1, 4, ., 9, 9, ., n, 40.75280.99770.8133N/Ano
O65572CCD1_ARATH1, ., 1, 4, ., 9, 9, ., n, 40.78030.98180.8048yesno
Q94IR2CCD1_PHAVU1, ., 1, 4, ., 9, 9, ., n, 40.75050.99770.8103N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.99.n40.991
3rd Layer1.14.990.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00091041
annotation not avaliable (545 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00400044
hypothetical protein (263 aa)
  •     0.493

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
PLN02491545 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava 0.0
pfam03055469 pfam03055, RPE65, Retinal pigment epithelial membr 1e-136
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 1e-123
COG3670490 COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge 5e-94
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 2e-11
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information 
 Score =  825 bits (2132), Expect = 0.0
 Identities = 363/441 (82%), Positives = 395/441 (89%), Gaps = 1/441 (0%)

Query: 1   MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFK 60
           M+HG+RIKDGKA YVSRYVKTSRLKQEEFFGGAKF KIGD+KGLFGLLMVNM  LR   K
Sbjct: 106 MIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLK 165

Query: 61  VLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTA 120
           VLDFSYGNG GNTALIYHHGKLL LSE DKPYV+KVL+DGDLQTLG+LDYDKRL H FTA
Sbjct: 166 VLDFSYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTA 225

Query: 121 HPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIF 180
           HPK+DP+T EMFTFGY+  PPY+TYRVISKDG MHDPVPIT+S PIMMHDFAITENYAIF
Sbjct: 226 HPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIF 285

Query: 181 LDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAW 240
           +DLP+ FR KEMVKE K IY FD T KARFGVLPRYA+D+L IRWFELPNC+IFHNANAW
Sbjct: 286 MDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW 345

Query: 241 EEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVD 300
            EEEDEVVLITCR+ NPDLDM NG +KE LE+   ELYEMRFNMKTG ASQKKLS + VD
Sbjct: 346 -EEEDEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVD 404

Query: 301 FPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGP 360
           FPR+NE Y GRKQRYVYG+IL++IAKVTG+IKFDL AEPETGK KLEVGGNVKGIFDLGP
Sbjct: 405 FPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGP 464

Query: 361 GRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHR 420
           GRFGSEA+FVPREP +TSEEDDGYLIF VHDENTGKS+V VIDAKTMSADPVAV+ELPHR
Sbjct: 465 GRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHR 524

Query: 421 VPYGFHGIFLSEEQLEELAKL 441
           VPYGFH  F++EEQL+E AKL
Sbjct: 525 VPYGFHAFFVTEEQLQEQAKL 545

Length = 545
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein Back     alignment and domain information
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
PLN02491545 carotenoid 9,10(9',10')-cleavage dioxygenase 100.0
PLN02258590 9-cis-epoxycarotenoid dioxygenase NCED 100.0
COG3670490 Lignostilbene-alpha,beta-dioxygenase and related e 100.0
PF03055486 RPE65: Retinal pigment epithelial membrane protein 100.0
PLN02969610 9-cis-epoxycarotenoid dioxygenase 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 99.83
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=7.1e-110  Score=874.80  Aligned_cols=440  Identities=83%  Similarity=1.341  Sum_probs=383.6

Q ss_pred             CeeEEEEeCCcEEEEeeeecChhhHhhhhcCCceeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEECC
Q 013529            1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHG   80 (441)
Q Consensus         1 mv~~~~f~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~~g   80 (441)
                      |||+|+|+||+|+|+||||||++|++|+++|+.+|..++..++.+|.++..+..+|...+..+....+|+|||||++|+|
T Consensus       106 Mlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~g  185 (545)
T PLN02491        106 MIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHG  185 (545)
T ss_pred             cEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECC
Confidence            99999999999999999999999999999999999988877777776655555555443322222236899999999999


Q ss_pred             EEEEEecCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCCCCeEEEEEECCCCCeeeeEEE
Q 013529           81 KLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPI  160 (441)
Q Consensus        81 ~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~  160 (441)
                      |||||||+|.||++++.+++||||+|..||+|+|..+||||||+||.|||+++|||+..+++++|+++|++|++.+.+++
T Consensus       186 rLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i  265 (545)
T PLN02491        186 KLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPI  265 (545)
T ss_pred             EEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEe
Confidence            99999999999998762226999999999999998899999999999999999999987789999999999999988999


Q ss_pred             eeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEccccce
Q 013529          161 TMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAW  240 (441)
Q Consensus       161 ~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NAy  240 (441)
                      ++|.++|||||+|||||+||+++|+.+++.+|+++++.++.|+|++++||+||||++++.+.++||++|+||+||++|||
T Consensus       266 ~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~  345 (545)
T PLN02491        266 TISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW  345 (545)
T ss_pred             ecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCcc
Confidence            99999999999999999999999999999999887788999999999999999998755568999999999999999999


Q ss_pred             ecCCCeEEEEEEeccCCCCcccCCccccccccCcccEEEEEEeCCCCCeeEEecCCCCCcCCccCCCCCCCCCcEEEeec
Q 013529          241 EEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSI  320 (441)
Q Consensus       241 E~~~g~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~~ry~Y~~~  320 (441)
                      |++ |+||+|+|++++++++...+...+..+...++|+|||||+++|+++++.|++.++|||+||+++.||+|||+|+++
T Consensus       346 Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~  424 (545)
T PLN02491        346 EEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTI  424 (545)
T ss_pred             ccC-CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEec
Confidence            987 8999999999886654333332222334568999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEE
Q 013529          321 LENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVY  400 (441)
Q Consensus       321 ~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~~~~s~L~  400 (441)
                      .++.+.+++|+|+|++++..+|+.+.+.+++..+.|++++++|+|||+||||+++.+++|||||||++|+|.++++|+|+
T Consensus       425 ~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~  504 (545)
T PLN02491        425 LDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVN  504 (545)
T ss_pred             cCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEE
Confidence            77666789999999997533344322223334457999999999999999997541258999999999999999999999


Q ss_pred             EEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhhcC
Q 013529          401 VIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL  441 (441)
Q Consensus       401 VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~~~~~~~~~  441 (441)
                      ||||++|++|||||++||++||+||||+|++++||++|+.+
T Consensus       505 VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~~~  545 (545)
T PLN02491        505 VIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL  545 (545)
T ss_pred             EEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhhcC
Confidence            99999999999999999999999999999999999988754

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection Back     alignment and domain information
>PLN02969 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
3npe_A529 Structure Of Vp14 In Complex With Oxygen Length = 5 6e-79
2biw_A490 Crystal Structure Of Apocarotenoid Cleavage Oxygena 2e-29
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  291 bits (744), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 165/449 (36%), Positives = 253/449 (56%), Gaps = 31/449 (6%)
Query: 1   MLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRES 58
           M+H LRI++G A +Y  R+ +T+RL+QE   G   F K IG++ G  G+  + +   R +
Sbjct: 101 MVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAA 160
Query: 59  FKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPF 118
             ++D S G G  N  L+Y +G+LL +SE D PY ++V  DGDL+T+G  D+D +L    
Sbjct: 161 CGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAM 220
Query: 119 TAHPKIDPYTDEMFTFGYTQTP-PYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENY 177
            AHPK+DP T E+    Y     PY+ Y     DG   D V I +  P M+HDFAITEN 
Sbjct: 221 IAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENL 280
Query: 178 AIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA 237
            +  D  + F+ +EM++    +   D    +RFGVLP++A D  ++ W ++P+C+ FH  
Sbjct: 281 VVVPDHQVVFKLQEMLRGGSPV-VLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLW 339
Query: 238 NAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPA 297
           NAWE+E    V++      P   +FN    E+ E   + L E+R + +TG ++++ + P 
Sbjct: 340 NAWEDEATGEVVVIGSCMTPADSIFN----ESDERLESVLTEIRLDARTGRSTRRAVLPP 395
Query: 298 C----VDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGK-TKLEVGGNV 352
                ++   +N + +GR+ RY Y ++ E   KV+G  K DL     TG+ TK       
Sbjct: 396 SQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDL----STGELTK------- 444
Query: 353 KGIFDLGPGRFGSEAVFVPREPSSTSE--EDDGYLIFHVHDENTGKSAVYVIDAKTMSAD 410
              F+ G GRFG E  FVP +P++     EDDGY++  VHDE  G S + V++A  M  +
Sbjct: 445 ---FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE 501
Query: 411 PVAVIELPHRVPYGFHGIFLSEEQLEELA 439
             A ++LP RVP+GFHG F++ ++LE  A
Sbjct: 502 --ATVQLPSRVPFGFHGTFITGQELEAQA 528
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 1e-139
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 1e-131
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 1e-102
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529 Back     alignment and structure
 Score =  407 bits (1048), Expect = e-139
 Identities = 162/448 (36%), Positives = 247/448 (55%), Gaps = 29/448 (6%)

Query: 1   MLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRES 58
           M+H LRI++G A +Y  R+ +T+RL+QE   G   F K IG++ G  G+  + +   R +
Sbjct: 101 MVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAA 160

Query: 59  FKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPF 118
             ++D S G G  N  L+Y +G+LL +SE D PY ++V  DGDL+T+G  D+D +L    
Sbjct: 161 CGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAM 220

Query: 119 TAHPKIDPYTDEMFTFGY-TQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENY 177
            AHPK+DP T E+    Y     PY+ Y     DG   D V I +  P M+HDFAITEN 
Sbjct: 221 IAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENL 280

Query: 178 AIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA 237
            +  D  + F+ +EM++        D    +RFGVLP++A D  ++ W ++P+C+ FH  
Sbjct: 281 VVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLW 339

Query: 238 NAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPA 297
           NAWE+E    V++      P   +FN       E   + L E+R + +TG ++++ + P 
Sbjct: 340 NAWEDEATGEVVVIGSCMTPADSIFNES----DERLESVLTEIRLDARTGRSTRRAVLPP 395

Query: 298 ----CVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVK 353
                ++   +N + +GR+ RY Y ++ E   KV+G  K DL     TG+          
Sbjct: 396 SQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDL----STGELT-------- 443

Query: 354 GIFDLGPGRFGSEAVFVPREPSSTS--EEDDGYLIFHVHDENTGKSAVYVIDAKTMSADP 411
             F+ G GRFG E  FVP +P++     EDDGY++  VHDE  G S + V++A  M    
Sbjct: 444 -KFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMR--L 500

Query: 412 VAVIELPHRVPYGFHGIFLSEEQLEELA 439
            A ++LP RVP+GFHG F++ ++LE  A
Sbjct: 501 EATVQLPSRVPFGFHGTFITGQELEAQA 528
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 100.0
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 100.0
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 100.0
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=4.3e-105  Score=838.54  Aligned_cols=416  Identities=39%  Similarity=0.732  Sum_probs=364.9

Q ss_pred             CeeEEEEeCCcE-EEEeeeecChhhHhhhhcCCceeec-cCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEE
Q 013529            1 MLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYH   78 (441)
Q Consensus         1 mv~~~~f~~G~v-~y~~Rfv~T~~~~~e~~ag~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~   78 (441)
                      |||+|+|+||+| +|+||||||++|++|+++||++|++ +|+..+..+..+......+..++.++....+|+|||||++|
T Consensus       101 mlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~  180 (529)
T 3npe_A          101 MVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYF  180 (529)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEE
T ss_pred             eEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEE
Confidence            899999999999 9999999999999999999999987 77776554444444333344444344333468999999999


Q ss_pred             CCEEEEEecCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCC-CCeEEEEEECCCCCeeee
Q 013529           79 HGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDP  157 (441)
Q Consensus        79 ~g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~-~~~~~~~~~~~~g~~~~~  157 (441)
                      +||||||||+|.||+++++|+.||||+|.+||+|+|..+||||||+||.|||+++|+|+.. .|++.|++++++|++.+.
T Consensus       181 ~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~  260 (529)
T 3npe_A          181 NGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDD  260 (529)
T ss_dssp             TTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCC
T ss_pred             CCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEE
Confidence            9999999999999999665535999999999999999899999999999999999999865 589999999999999888


Q ss_pred             EEEeeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEccc
Q 013529          158 VPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA  237 (441)
Q Consensus       158 ~~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~  237 (441)
                      +++++|.++|||||+|||||+||+++|+.+|+.+|+. |+.++.|+|++++||+||||++++.+.++||++|+||+||++
T Consensus       261 ~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~-g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~  339 (529)
T 3npe_A          261 VEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLW  339 (529)
T ss_dssp             EECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTT-TCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEE
T ss_pred             EEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhC-CCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEec
Confidence            8899999999999999999999999999999999875 568999999999999999999865568999999999999999


Q ss_pred             cceecCC-CeEEEEEEeccCCCCcccCCccccccccCcccEEEEEEeCCCCCeeEEecC----CCCCcCCccCCCCCCCC
Q 013529          238 NAWEEEE-DEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLS----PACVDFPRINEHYMGRK  312 (441)
Q Consensus       238 NAyE~~~-g~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~----~~~~EfP~in~~~~G~~  312 (441)
                      ||||+++ |+||+|.|++.+.+. .+.    .......+.|+||+||+++|+++.+.|.    +.++|||+||++|.||+
T Consensus       340 NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~  414 (529)
T 3npe_A          340 NAWEDEATGEVVVIGSCMTPADS-IFN----ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRE  414 (529)
T ss_dssp             EEEEETTTTEEEEEEEEECCCCC-SCC----SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSC
T ss_pred             ccEecCCCCeEEEEEecccCchh-hhh----ccchhhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCc
Confidence            9999853 789998888765431 111    1123456789999999999999888887    47899999999999999


Q ss_pred             CcEEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCC----CCCCCCCCcEEEEE
Q 013529          313 QRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREP----SSTSEEDDGYLIFH  388 (441)
Q Consensus       313 ~ry~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~----~~~~~EdDG~ll~~  388 (441)
                      |||+|+++.++.+.+++|+|+|++|    |+.         +.||+++++++|||||||||+    +  ++|||||||++
T Consensus       415 ~Ry~Y~~~~~~~~~~~~l~K~D~~t----g~~---------~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~lLs~  479 (529)
T 3npe_A          415 TRYAYLAVAEPWPKVSGFAKVDLST----GEL---------TKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYVLTF  479 (529)
T ss_dssp             CSEEEEEECCSTTSCCEEEEEETTT----CCE---------EEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEEEEE
T ss_pred             cceEEEeccCCCCCcceEEEEecCC----Cce---------EEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEEEEE
Confidence            9999999987767789999999996    552         479999999999999999997    4  78999999999


Q ss_pred             EEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhh
Q 013529          389 VHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA  439 (441)
Q Consensus       389 v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~~~~~~~  439 (441)
                      |+|..+++|+|+||||++|+  +|||++||++||+||||+|++++||++|+
T Consensus       480 V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          480 VHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             EEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             EEECCCCcEEEEEEeCCCCc--cceEEECCCCCCCCccccccCHHHhhhhh
Confidence            99999999999999999998  79999999999999999999999999875
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00