Citrus Sinensis ID: 013539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MPKARALNTISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQNNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE
Secondary Structure (PSIPRED)
cccccccccEEEcccEEEEccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccEEEEcccEEEEcccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccHcccccccccccccHHHcccccHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHccEEEEcHHHccccHHHcccccccHHHHHHHHHHHcccccccccccccccccccccEEEEcccEEEEcccccc
Coil and Loop (DISEMBL)
mpkaralntisinpslisfkPRQVLLAKanaepsmnksstralkpEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQiekddfsdcslDLAHMCCKyfetcdngstvsskkvqdsqkdgdskrgkeaesaagvetvskkkkkrsnedVHTIVVqsedsgelansketEKEKSKqnnkrkkkvkldsesLVNDVEvlgtegkhgtkakeseSARDFLATEttatngniasvedesvkdkgkkkqkdgsvskssfdvdskeigeqksgrteskndrnktseedttdkerkgskkrkrlaseekdsepndkmeveeskrrktegseelkinddqvngtdkneeksapnktrkkqangsaepksvKAFQrvkvdeveftderlkdnsywakdgaeigygAKAQEVLgqvrgrdfrhektkkkrgsyrggqidlqshsvkfnysdee
Flexible Loop (DISEMBL)
mpkaralntisinpslisfkPRQVLLAKAnaepsmnksstralkpeqKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFEtcdngstvsskkvqdsqkdgdskrgkeaesaagvetvskkkkkrsnedvhtivvqsedsgelansketekekskqnnkrkkkvkldseslvndvevlgtegkhgtkakesesarDFLAtettatngniasvedesvkdkgkkkqkdgsvskssfdvdskeigeqksgrteskndrnktseedttdkerkgskkrkrlaseekdsepndkmeveeskrrktegseelkinddqvngtdkneeksapnktrkkqangsaepksvkafqrvkvdeveftderlkdnsywakdGAEIGYGAKAqevlgqvrgrdfrhektkkkrgsyrggqidlqshsvkfnysdee
Low Complexity Region (SEG)
MPKARALNTISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEkekskqnnkrkkkvkLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDEsvkdkgkkkqkdgsvskssfdvdskEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE
Disordered region (IsUnstruct)
****************I******************************KVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCD**************************************************************************************************************************************************************************************************************************************************************************VDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQ**************************************
Disordered Region (DISOPRED)
***********INPSLISFKPRQV*************************LLLRSVAGYLKSNGFCKTLK***********************************************************************************************************************************************************************************************************************************************************************************************************DEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDF************R**QIDLQSHS**F******
Disordered Region (DISEMBL)
MPKARALNTISINPSLISFKPRQVLLAKAN***********ALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDN********************************************VHTIVVQS******************************SESLVNDVEVLGT*************ARDFLATETTATNGNIASVE********************************************************************************************ELKINDDQV*****************************KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDF************RGGQIDLQSHSVKFNYSDEE
Disordered Region (DISPRO)
*PKARALNTISINPSLISFKPRQVLLAKA***********RALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETC*********************************************************************************************************************************************************************************************************************************************************************AFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRH*****KRGSYRGGQIDLQSHSVKFNY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKARALNTISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQNNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
P41777	704	Nucleolar and coiled-body	yes	no	0.165	0.103	0.554	3e-16
Q14978	699	Nucleolar and coiled-body	yes	no	0.165	0.104	0.540	5e-16
P32583	406	Suppressor protein SRP40	yes	no	0.163	0.177	0.506	2e-11
Q9P785	451	LisH domain-containing pr	yes	no	0.158	0.155	0.44	1e-06

>sp|P41777|NOLC1_RAT Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 363 FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYR 422
           F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYR
Sbjct: 630 FRRVREEEIEV-DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 688

Query: 423 GGQIDLQSHSVKFN 436
           GG I +Q +SVKF+
Sbjct: 689 GGSISVQVNSVKFD 702

Related to nucleologenesis, may play a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus. It has intrinsic GTPase and ATPase activities. May play an important role in transcription catalyzed by RNA polymerase I.
Rattus norvegicus (taxid: 10116)

>sp|Q14978|NOLC1_HUMAN Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 363 FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYR 422
           F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYR
Sbjct: 625 FRRVREEEIEV-DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 683

Query: 423 GGQIDLQSHSVKFN 436
           GG I +Q +S+KF+
Sbjct: 684 GGSISVQVNSIKFD 697

Related to nucleologenesis, may play a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus. It has intrinsic GTPase and ATPase activities. May play an important role in transcription catalyzed by RNA polymerase I.

Homo sapiens (taxid: 9606)

>sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP40 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 361 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 420
           K F RV   ++ F    L DN+Y    GA   +G KA E LG+VRG+DF   K K KRGS
Sbjct: 333 KHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGS 389

Query: 421 YRGGQIDLQSHSVKF 435
           YRGG I L+S S KF
Sbjct: 390 YRGGSITLESGSYKF 404

Not known; weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P785|YNY5_SCHPO LisH domain-containing protein C1711.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.05 PE=4 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 362 AFQRV-KVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 420
            F RV    + +F    L+DNS+  +D     YG  A   L   RG+ FR EK KKKRGS
Sbjct: 381 PFTRVGDPSQWDFASPALRDNSFNFEDD----YGTLANRDLIVTRGKGFRQEKNKKKRGS 436

Query: 421 YRGGQIDLQSHSVKF 435
           YRGG+I+ +  S KF
Sbjct: 437 YRGGRINTEVRSFKF 451


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.302    0.121    0.316 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,214,842
Number of Sequences: 539616
Number of extensions: 6875892
Number of successful extensions: 64505
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 3789
Number of HSP's that attempted gapping in prelim test: 34016
Number of HSP's gapped (non-prelim): 17753
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 63 (28.9 bits)

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
449432550	426	PREDICTED: uncharacterized protein LOC10	0.886	0.917	0.410	7e-61
224090503	271	predicted protein [Populus trichocarpa]	0.557	0.907	0.558	2e-60
224144304	181	predicted protein [Populus trichocarpa]	0.399	0.972	0.702	2e-59
255554456	458	Cylicin-2, putative [Ricinus communis] g	0.875	0.842	0.362	2e-51
357479493	341	Nucleolar and coiled-body phosphoprotein	0.365	0.472	0.642	1e-44
449520641	325	PREDICTED: uncharacterized protein LOC10	0.473	0.643	0.502	9e-44
356548188	374	PREDICTED: uncharacterized protein LOC10	0.380	0.449	0.610	1e-43
356562052	347	PREDICTED: uncharacterized protein LOC10	0.321	0.409	0.653	6e-41
125537391	431	hypothetical protein OsI_39099 [Oryza sa	0.215	0.220	0.747	3e-37
125580061	430	hypothetical protein OsJ_36857 [Oryza sa	0.215	0.220	0.747	5e-37

>gi|449432550|ref|XP_004134062.1| PREDICTED: uncharacterized protein LOC101208847 [Cucumis sativus]

 Score =  241 bits (614), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 185/451 (41%), Positives = 239/451 (52%), Gaps = 60/451 (13%)

Query: 19  FKPRQVLLAKANAEPSMNKSS-------TRALKPEQKVLLLRSVAGYLKSNGFCKTLKKF 71
           FKPRQVLL+    + S N +        T +L P+ + LLL +VA +L+ NGF KTLKKF
Sbjct: 8   FKPRQVLLSHHTMKQSNNHTQAPNSADETLSLHPQHRTLLLHAVAFFLERNGFSKTLKKF 67

Query: 72  LSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSKRGKEA-ESAA 130
            SEAQIEK    D  L L  MC K+ + C    T  +K  +++ K+    R  EA E   
Sbjct: 68  RSEAQIEKGSSKDLLLSLEEMCHKHLKKCSQAITTENKPDEETVKEVADGRVPEAQEEPT 127

Query: 131 GVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQNNKRKKKVKLDSESLVN 190
                 KK KK +  + H    + E S E   S +   + +  +   KK      +    
Sbjct: 128 KKSKDKKKIKKNAVPETHVDAAEKEKS-EPVESLKNSNDTTVHDEAGKKSKDKKKKKNKE 186

Query: 191 DVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKS 250
            +E + T               + +A ++   NG++AS+E E V     KK+KDG  S  
Sbjct: 187 KLETVAT-------------ISNDIAVDSIGLNGDVASLE-EKVVKSKTKKKKDGRHS-- 230

Query: 251 SFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEV 310
                S E   Q +  T      N  +EE+  D     SKKRKRLASE+ D    ++   
Sbjct: 231 -----SHENSNQLNDGT------NILNEEEQNDI----SKKRKRLASEDNDIPAVNEKAT 275

Query: 311 EESKRRKTEGS-------EELKINDDQVNGTDKNE-------------EKSAPNKTRKKQ 350
           E+ KRRK E S       +  K++ D  N +  NE             EK++  K  KK 
Sbjct: 276 EDVKRRKLECSKGGSDSVQSTKVDVDAGNRSTINEVSPQTNEYVEKTAEKTSTKKAFKKH 335

Query: 351 ANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR 410
           +NGS EPK++  FQRVKVD V F DE+L DNSYWAK GAE GYGAKAQEVLGQV+GR FR
Sbjct: 336 SNGSTEPKTINPFQRVKVDAVTFADEKLADNSYWAKGGAESGYGAKAQEVLGQVKGRGFR 395

Query: 411 HEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           HEKTKKKRGSYRGG IDLQSHSVKFNYSD++
Sbjct: 396 HEKTKKKRGSYRGGVIDLQSHSVKFNYSDDD 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090503|ref|XP_002309003.1| predicted protein [Populus trichocarpa] gi|222854979|gb|EEE92526.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 178/249 (71%), Gaps = 3/249 (1%)

Query: 193 EVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSF 252
           +V  +EG   T +K     +D    +   ++ +  S ++++VK + +K +KD  VS+   
Sbjct: 26  DVSSSEGNKATVSKTENKPKDKKNKKNKLSDADADSNDNKNVKYEERKNKKDIVVSE--- 82

Query: 253 DVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEE 312
           ++  + + E KS + +S+ D +K SE+D  DKE K SKKRKRL SE+  ++P D+  VE+
Sbjct: 83  NMSVETLDEGKSNKVDSEKDDSKNSEKDVNDKENKSSKKRKRLPSEDDATQPADEKAVED 142

Query: 313 SKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVE 372
           SKRRK E SEE K N       +KN EKS+  K+ KK+ NGS EPK+VK FQRVKVDEV 
Sbjct: 143 SKRRKMESSEEPKENGSANGNLEKNGEKSSLQKSMKKEKNGSVEPKTVKHFQRVKVDEVV 202

Query: 373 FTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHS 432
           F+DERLKDNSYWAKDGAE GYGAKAQ+VLGQVRGRDFRHEKTKKKRG+YRGGQIDLQSHS
Sbjct: 203 FSDERLKDNSYWAKDGAEEGYGAKAQDVLGQVRGRDFRHEKTKKKRGTYRGGQIDLQSHS 262

Query: 433 VKFNYSDEE 441
            KFNYSDE+
Sbjct: 263 FKFNYSDED 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144304|ref|XP_002325253.1| predicted protein [Populus trichocarpa] gi|222866687|gb|EEF03818.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 144/178 (80%), Gaps = 2/178 (1%)

Query: 265 GRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEEL 324
           G++ S+ D +K  +ED  DKE K SKKRKRL+SE+   +P ++  +EESKRRKTE SEEL
Sbjct: 5   GKSNSEKDDSKNLKEDVNDKENKSSKKRKRLSSEDDAPQPANETAIEESKRRKTESSEEL 64

Query: 325 KINDDQVNGT-DKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSY 383
           K N  Q NG  ++N  KSAP K+  K+ NGS EPK+VK FQRVKVDEV F+DERLKDNSY
Sbjct: 65  KENV-QANGNLEENGAKSAPQKSMMKEKNGSVEPKTVKHFQRVKVDEVVFSDERLKDNSY 123

Query: 384 WAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           WAKDGAE GYGAKAQEVLGQVRGR FRHEKTKKKRG+YRGGQIDLQSHS KFNYSDE+
Sbjct: 124 WAKDGAEDGYGAKAQEVLGQVRGRGFRHEKTKKKRGTYRGGQIDLQSHSFKFNYSDED 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554456|ref|XP_002518267.1| Cylicin-2, putative [Ricinus communis] gi|223542614|gb|EEF44153.1| Cylicin-2, putative [Ricinus communis]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 169/466 (36%), Positives = 237/466 (50%), Gaps = 80/466 (17%)

Query: 1   MPKARALNTISINPSLISFKPRQVLLAKANAEPSM------NKSSTRALKPEQKVLLLRS 54
           MPK +   T+ +NPS+++FKPRQVLL       SM      N +    LKPEQK LLL S
Sbjct: 1   MPKTQIGKTVEVNPSILAFKPRQVLLLSKPPASSMKLDDGSNNNDKLILKPEQKTLLLNS 60

Query: 55  VAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVS-SKKVQD 113
           +A YL+ +GF KT+KKF SEA+I+KDD  + S DL  M  K  +  ++ +  S S +VQ+
Sbjct: 61  IAQYLERSGFSKTVKKFRSEARIQKDDLIESSFDLQEMFIKILDMRNHANKNSKSHRVQE 120

Query: 114 SQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQ 173
            Q  G S+     + A+      ++KK +S  D       +E++    N+  TE +  ++
Sbjct: 121 LQTVGISRTDGNGDFASATGDGKERKKDKSAVDKSIGPKNAEENPTPDNTMSTEVKPKEK 180

Query: 174 NNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDES 233
              +KK+  L SESL N+                     + ++  T   + ++A   DE 
Sbjct: 181 TRNKKKQSNLGSESLCNN------------------PNEESVSEPTVEKSKDVAIKADEK 222

Query: 234 VKDKGKKKQKDGSVSKSSFDVDSKE--IGEQKSGRTESKNDRNKTSEEDTTDKERKGSKK 291
           + D     +      K   +  S +  + E+   + +S+N   KT +ED  +K+ K SKK
Sbjct: 223 MTDSKTDDKPKDKKKKKKKNKLSSDPIVAEENLQKIDSEN--LKTPKEDFIEKQDKNSKK 280

Query: 292 RKRLASE------------EKDSEPNDKMEVEESKRRKTEGSEELKINDD---------- 329
           RKR ASE            EK  E +  ++ EESKRRKT+ SEE K+ D           
Sbjct: 281 RKRTASEDGEKLIEDQPNGEKLVEVSKHIKTEESKRRKTKDSEEPKVRDHSTGLDSSSRI 340

Query: 330 -----------------------QVNGTDKNE-----EKSAPNKTRKKQANGSAEPKSVK 361
                                  ++NG          EKS+  K  K+Q NGS EP+S  
Sbjct: 341 EEKPQKEENSQTVSGEAQKLLTIELNGQSNRSLKEIGEKSSMKKIEKQQ-NGSTEPQSAI 399

Query: 362 AFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGR 407
            FQRVKVD+V F+DERLKDNSYWAKDGAEIGYGAKAQ++LGQVRGR
Sbjct: 400 RFQRVKVDDVVFSDERLKDNSYWAKDGAEIGYGAKAQDILGQVRGR 445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479493|ref|XP_003610032.1| Nucleolar and coiled-body phosphoprotein [Medicago truncatula] gi|355511087|gb|AES92229.1| Nucleolar and coiled-body phosphoprotein [Medicago truncatula]

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 127/165 (76%), Gaps = 4/165 (2%)

Query: 279 EDTTDKERKGSKKRKRLASEEKDSEPNDKMEV-EESKRRKTEGSEELKINDDQVNGTDKN 337
           E+   +E+K SKKRKR  S+E D E + +M+V EE+KRRK E   E K  +DQ    + +
Sbjct: 179 EEAIPEEKKDSKKRKRPISKEND-EQDTEMKVDEETKRRKIENGSESK-GEDQSAKPNGH 236

Query: 338 EEKSAPNKTRKKQANGSAEPKSVKA-FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAK 396
            E  A  K++KK+   S+E K VKA FQRV+VD+VEF DERL+DNSYWAKDGAE GYGAK
Sbjct: 237 SENGAVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGAESGYGAK 296

Query: 397 AQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           A+E+LGQVRGRDFRHEKTKKKRG+YRGG IDL SHSVKFNYSDEE
Sbjct: 297 AEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520641|ref|XP_004167342.1| PREDICTED: uncharacterized protein LOC101231340, partial [Cucumis sativus]

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 152/247 (61%), Gaps = 38/247 (15%)

Query: 215 LATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRN 274
           +A ++   NG++AS+E E V     KK+KDG  S       S E   Q +  T      N
Sbjct: 97  IAVDSIGLNGDVASLE-EKVVKSKTKKKKDGRHS-------SHENSNQLNDGT------N 142

Query: 275 KTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTE----GSEEL---KIN 327
             +EE+  D     SKKRKRLASE+ D    ++   E+ KRRK E    GS+ +   K++
Sbjct: 143 ILNEEEQNDI----SKKRKRLASEDNDIPAVNEKATEDVKRRKLECSKGGSDSVQSTKVD 198

Query: 328 DDQVNGTDKNE-------------EKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFT 374
            D  N +  NE             EK++  K  KK +NGS EPK++  FQRVKVD V F 
Sbjct: 199 VDAGNRSTINEVSPQTNEYVEKTAEKTSTKKAFKKHSNGSTEPKTINPFQRVKVDAVTFA 258

Query: 375 DERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVK 434
           DE+L DNSYWAK GAE GYGAKAQEVLGQV+GR FRHEKTKKKRGSYRGG IDLQSHSVK
Sbjct: 259 DEKLADNSYWAKGGAESGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVK 318

Query: 435 FNYSDEE 441
           FNYSD++
Sbjct: 319 FNYSDDD 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548188|ref|XP_003542485.1| PREDICTED: uncharacterized protein LOC100819339 [Glycine max]

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 127/177 (71%), Gaps = 9/177 (5%)

Query: 267 TESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKI 326
           T SK +  + S ++   +  K SKKRKR  SEE   +  D    EE+KR+K E   E K 
Sbjct: 205 TVSKEENIEASNKEMMHEVEKDSKKRKRPISEENGQQVAD----EETKRQKIENLNESK- 259

Query: 327 NDDQVNGT-DKNEEKSAPNKTRKKQANGSAEPKSVK-AFQRVKVDEVEFTDERLKDNSYW 384
             +Q NG  +K  EKS+   + KKQ  GS E K VK AFQRV+VD+++FTDERL+DNSYW
Sbjct: 260 --EQTNGNLEKGGEKSSVQGSLKKQQKGSVEKKPVKPAFQRVQVDKIQFTDERLQDNSYW 317

Query: 385 AKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           AKDGAE GYGAKA E+L QVRGR FRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDE+
Sbjct: 318 AKDGAENGYGAKAAEILDQVRGRGFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDED 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562052|ref|XP_003549289.1| PREDICTED: uncharacterized protein LOC100793322 [Glycine max]

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 110/147 (74%), Gaps = 5/147 (3%)

Query: 297 SEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGT-DKNEEKSAPNKTRKKQANGSA 355
           SEE   +  D    EE+KRRK E   E K   +Q NG  +K  EKS+   ++KKQ  GS 
Sbjct: 204 SEENGQQVADIKADEETKRRKIENLNESK---EQTNGNLEKAGEKSSVQSSQKKQQKGSV 260

Query: 356 EPKSVKA-FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKT 414
           E K V A FQRV+VD+++F DERL+DNSYWAKDGAE GYGAKA E+L QVRGR FRHEKT
Sbjct: 261 EKKPVNAAFQRVQVDKIQFADERLQDNSYWAKDGAENGYGAKAAEILDQVRGRGFRHEKT 320

Query: 415 KKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           KKKRGSYRGGQIDLQSHSVKFNYSDE+
Sbjct: 321 KKKRGSYRGGQIDLQSHSVKFNYSDED 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537391|gb|EAY83879.1| hypothetical protein OsI_39099 [Oryza sativa Indica Group]

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 88/99 (88%), Gaps = 4/99 (4%)

Query: 343 PNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLG 402
           PNK +KK    S+EPK+V AFQRVK+++V+F D+RL+DNSYWAK GA+ GYGAKAQEVLG
Sbjct: 337 PNKRQKK----SSEPKTVNAFQRVKLEDVKFADDRLQDNSYWAKGGADSGYGAKAQEVLG 392

Query: 403 QVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           QVRGR FRHEKTKKKRG+YRGGQIDLQ+HS+KFN SD+E
Sbjct: 393 QVRGRGFRHEKTKKKRGTYRGGQIDLQTHSIKFNDSDDE 431

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125580061|gb|EAZ21207.1| hypothetical protein OsJ_36857 [Oryza sativa Japonica Group]

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 88/99 (88%), Gaps = 4/99 (4%)

Query: 343 PNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLG 402
           PNK +KK    S+EPK+V AFQRVK+++V+F D+RL+DNSYWAK GA+ GYGAKAQEVLG
Sbjct: 336 PNKRQKK----SSEPKTVNAFQRVKLEDVKFADDRLQDNSYWAKGGADSGYGAKAQEVLG 391

Query: 403 QVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 441
           QVRGR FRHEKTKKKRG+YRGGQIDLQ+HS+KFN SD+E
Sbjct: 392 QVRGRGFRHEKTKKKRGTYRGGQIDLQTHSIKFNDSDDE 430

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2175584	330	AT5G57120 "AT5G57120" [Arabido	0.387	0.518	0.521	3.7e-39
ZFIN|ZDB-GENE-030131-6349	1001	nolc1 "nucleolar and coiled-bo	0.342	0.150	0.396	1.9e-20
RGD|621578	704	Nolc1 "nucleolar and coiled-bo	0.387	0.242	0.342	1.6e-19
CGD|CAL0005156	428	SRP40 [Candida albicans (taxid	0.689	0.710	0.28	1.7e-19
UNIPROTKB|Q5A1Y5	428	SRP40 "Putative uncharacterize	0.689	0.710	0.28	1.7e-19
UNIPROTKB|Q14978	699	NOLC1 "Nucleolar and coiled-bo	0.392	0.247	0.338	7.4e-19
SGD|S000001800	406	SRP40 "Nucleolar serine-rich p	0.727	0.790	0.229	2.8e-18
UNIPROTKB|E1C1Q1	688	E1C1Q1 "Uncharacterized protei	0.383	0.245	0.346	3.3e-18
POMBASE|SPBC1711.05	451	SPBC1711.05 "nucleocytoplasmic	0.727	0.711	0.240	1e-17
UNIPROTKB|F1S8T1	708	NOLC1 "Uncharacterized protein	0.739	0.460	0.239	3.1e-17

TAIR|locus:2175584 AT5G57120 "AT5G57120" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 99/190 (52%), Positives = 121/190 (63%)

Query:   263 KSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTE--- 319
             + G  E K  ++K+   +  D + K SKKRKR   EE   E  D  + EESKRRK E   
Sbjct:   148 EDGVKEKKKKKSKSKSVEADDDKEKVSKKRKRSEPEETKEETED--DDEESKRRKKEENV 205

Query:   320 -----GSEELKINDDQV--NGT-DKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEV 371
                  G +E  + + +   NG  +K+E KS   K+ K  +N S EPK  K FQRV VDE+
Sbjct:   206 VENDEGVQETPVKETETKENGNAEKSETKSTNQKSGKGLSN-SKEPK--KPFQRVNVDEI 262

Query:   372 EFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSH 431
              +T+     NSY++K GAEIGYG KAQEVLGQVRGRDFRHEKTKKKRGSYRGG ID +SH
Sbjct:   263 VYTEN---SNSYYSKGGAEIGYGLKAQEVLGQVRGRDFRHEKTKKKRGSYRGGLIDQESH 319

Query:   432 SVKFNYSDEE 441
             S KFN SD+E
Sbjct:   320 STKFNNSDDE 329

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-030131-6349 nolc1 "nucleolar and coiled-body phosphoprotein 1" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
 Identities = 67/169 (39%), Positives = 91/169 (53%)

Query:   275 KTSEEDTTDKERKGSKKRKRLASEEK-DSEPNDKMEVEESKRRKTEGSEELKINDDQVNG 333
             KT     T    K     K+ A+E K +S  +++   EE     T G++  K        
Sbjct:   847 KTPPATKTPPATKTPPATKKQAAEAKAESSSSEESSEEEETPAATNGTQSAK------KA 900

Query:   334 TDKNEE--KSAPNK-TRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAE 390
             T KN++   S P    R KQ + +A P     F+R++ ++VE  D RLKDNS+ AK GA 
Sbjct:   901 TPKNKKIATSTPQTFPRTKQKDSNA-P-----FRRIREEDVE-VDPRLKDNSFDAKMGAN 953

Query:   391 IGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSD 439
               +G KA  VL   +G+ FRHEKTKKKRGSYRGG I    +S+KF+ SD
Sbjct:   954 GDWGQKANNVLKFTKGKSFRHEKTKKKRGSYRGGAISTTVNSIKFD-SD 1001

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

RGD|621578 Nolc1 "nucleolar and coiled-body phosphoprotein 1" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 61/178 (34%), Positives = 94/178 (52%)

Query:   262 QKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGS 321
             + S   E K  ++K + +    K       +   A +E + E  D  + +++   K    
Sbjct:   529 EDSSEEEKKKPKSKATPKPQAGKANGVPASQNGKAGKESEEEEEDTEQNKKAAGTKPGSG 588

Query:   322 EELKIN---DDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERL 378
             ++ K N   D+      K  +   PN T  K+  G  E ++   F+RV+ +E+E  D R+
Sbjct:   589 KKRKHNETADEAATPQSKKVKLQTPN-TFPKRKKG--EKRASSPFRRVREEEIE-VDSRV 644

Query:   379 KDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 436
              DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +SVKF+
Sbjct:   645 ADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 702

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0007000 "nucleolus organization" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008139 "nuclear localization sequence binding" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0015030 "Cajal body" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0033979 "box H/ACA snoRNA metabolic process" evidence=IGI

GO:0034512 "box C/D snoRNA binding" evidence=IDA

GO:0034513 "box H/ACA snoRNA binding" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

CGD|CAL0005156 SRP40 [Candida albicans (taxid:5476)]

 Score = 253 (94.1 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 91/325 (28%), Positives = 132/325 (40%)

Query:   121 KRGKEAESAAG-VETVSKKKKKR-SNEDVHTIVVQSEDSGELANSKETEXXXXXXXXXXX 178
             K  K+ ES    VE   KK K R S+ D      +SE S    +  E+            
Sbjct:   113 KVSKQLESIIDEVENQEKKSKPRNSSSDSEDSSSESESS---TSDSESSSSDSDSSSSDS 169

Query:   179 XXXXLDSESLVNDVEVLGTE-GKHGTKA----KESESARDFLATETTATNGNIASVEDEX 233
                  DSES  +D E    E  K   +A    K+SE + +    E      + +S   + 
Sbjct:   170 ESSSSDSESSSSDSEDSDDEEDKEDKEAEKDNKDSEDSENEKVEEDNKDTSSDSSSSSDS 229

Query:   234 XXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRK 293
                                     +        + S +D +  S+ D+ D +   S+   
Sbjct:   230 KSDSDSDSSSSSDSSSDSDSSSDSDSSSSSDSDSSSSSDSDSDSDSDS-DSDDNSSESSS 288

Query:   294 RLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNE-EKSAPNKTRKKQAN 352
                    DSE  ++ +  E K+RK   ++++K  +++     KNE E SA + T    A 
Sbjct:   289 EDEESSSDSESKEEQKQPEDKKRKH--TDDIK--EEKPVKKFKNESESSASSSTDSIPAT 344

Query:   353 GSAE--PKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR 410
                E  P   K F R+   +V F +  L+DN+Y    GA   +G KA E L QVRG+DF 
Sbjct:   345 PEPELKPGQRKHFSRIDRSKVNFENSVLQDNTY---KGAAGTWGEKASEKLLQVRGKDFT 401

Query:   411 HEKTKKKRGSYRGGQIDLQSHSVKF 435
               K K KRGSY+GG I L S S KF
Sbjct:   402 KNKNKMKRGSYKGGSITLASGSYKF 426

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A1Y5 SRP40 "Putative uncharacterized protein SRP40" [Candida albicans SC5314 (taxid:237561)]

 Score = 253 (94.1 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 91/325 (28%), Positives = 132/325 (40%)

Query:   121 KRGKEAESAAG-VETVSKKKKKR-SNEDVHTIVVQSEDSGELANSKETEXXXXXXXXXXX 178
             K  K+ ES    VE   KK K R S+ D      +SE S    +  E+            
Sbjct:   113 KVSKQLESIIDEVENQEKKSKPRNSSSDSEDSSSESESS---TSDSESSSSDSDSSSSDS 169

Query:   179 XXXXLDSESLVNDVEVLGTE-GKHGTKA----KESESARDFLATETTATNGNIASVEDEX 233
                  DSES  +D E    E  K   +A    K+SE + +    E      + +S   + 
Sbjct:   170 ESSSSDSESSSSDSEDSDDEEDKEDKEAEKDNKDSEDSENEKVEEDNKDTSSDSSSSSDS 229

Query:   234 XXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRK 293
                                     +        + S +D +  S+ D+ D +   S+   
Sbjct:   230 KSDSDSDSSSSSDSSSDSDSSSDSDSSSSSDSDSSSSSDSDSDSDSDS-DSDDNSSESSS 288

Query:   294 RLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNE-EKSAPNKTRKKQAN 352
                    DSE  ++ +  E K+RK   ++++K  +++     KNE E SA + T    A 
Sbjct:   289 EDEESSSDSESKEEQKQPEDKKRKH--TDDIK--EEKPVKKFKNESESSASSSTDSIPAT 344

Query:   353 GSAE--PKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR 410
                E  P   K F R+   +V F +  L+DN+Y    GA   +G KA E L QVRG+DF 
Sbjct:   345 PEPELKPGQRKHFSRIDRSKVNFENSVLQDNTY---KGAAGTWGEKASEKLLQVRGKDFT 401

Query:   411 HEKTKKKRGSYRGGQIDLQSHSVKF 435
               K K KRGSY+GG I L S S KF
Sbjct:   402 KNKNKMKRGSYKGGSITLASGSYKF 426

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q14978 NOLC1 "Nucleolar and coiled-body phosphoprotein 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
 Identities = 64/189 (33%), Positives = 98/189 (51%)

Query:   263 KSGRTESKNDRNK--TSEEDTTDKERKGSKKRKR--------LASEEKDSEPNDKMEVEE 312
             K G+ ES N  +   +SEE+    + KGS + +         L ++   +  N + E EE
Sbjct:   510 KKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEE 569

Query:   313 SKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANG-----SAEPKSVKAFQRVK 367
              K+     S+   +   + N   K  E     K + +  N        E ++   F+RV+
Sbjct:   570 KKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVR 629

Query:   368 VDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQID 427
              +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I 
Sbjct:   630 EEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSIS 688

Query:   428 LQSHSVKFN 436
             +Q +S+KF+
Sbjct:   689 VQVNSIKFD 697

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0006364 "rRNA processing" evidence=TAS

GO:0007049 "cell cycle" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

SGD|S000001800 SRP40 "Nucleolar serine-rich protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 242 (90.2 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 77/335 (22%), Positives = 135/335 (40%)

Query:   102 NGSTVSSKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELA 161
             + S+ SS   + S +   S  G  + S++  +  S + +             +ED+ E  
Sbjct:    83 SSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETK 142

Query:   162 NSK-ETEXXXXXXXXXXXXXXXLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETT 220
              +K E E                +SES  ++ +   +     +   ES+S  D   ++++
Sbjct:   143 KAKTEPESSSSSESSSSGSSSSSESES-GSESDSDSSSSSSSSSDSESDSESD---SQSS 198

Query:   221 ATNGNIASVEDEXXXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEED 280
             +++ +  S  D                             +  S  ++S    + +S  D
Sbjct:   199 SSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSD-SDSSGSSDSSSSSD 257

Query:   281 TTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEK 340
             ++  E   S      +  + DS  + ++E +E+   +++ +EE   + ++   T      
Sbjct:   258 SSSDESTSSDSSD--SDSDSDSGSSSELETKEATADESK-AEETPASSNE--STPSASSS 312

Query:   341 SAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEV 400
             S+ NK          +    K F RV   ++ F    L DN+Y    GA   +G KA E 
Sbjct:   313 SSANKLNIPAGTDEIKEGQRKHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEK 369

Query:   401 LGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 435
             LG+VRG+DF   K K KRGSYRGG I L+S S KF
Sbjct:   370 LGRVRGKDFTKNKNKMKRGSYRGGSITLESGSYKF 404

GO:0003674 "molecular_function" evidence=ND

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E1C1Q1 E1C1Q1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 62/179 (34%), Positives = 98/179 (54%)

Query:   260 GEQKSGRTESKNDRNKTSEEDTTDKERK---GSKKRKRLASEEKDSEPNDKMEVEESKRR 316
             G Q + +T +  ++ K+S     +++ K    S      +SEE+  + N ++     K++
Sbjct:   514 GAQNTSQTAASTEKAKSSMPAAKNQKSKPAGDSSSSSESSSEEEKGKANGELTGLAKKKQ 573

Query:   317 KTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDE 376
             K E  +E +  D   N   KN+ K+     + K+ +   E K+   F+RV+ +E+E  D 
Sbjct:   574 KREDVQESETPD---NKKAKNKPKTPHTVPKVKRVS---ESKASSPFRRVREEEIE-VDA 626

Query:   377 RLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 435
             R+ DNS+ AK GA   +G KA  +L   +G+ FRHEKTKKKRGSY GG I  Q +S+KF
Sbjct:   627 RVADNSFDAKKGAAGDWGEKANNILKFTKGKSFRHEKTKKKRGSYCGGTISTQVNSIKF 685

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

POMBASE|SPBC1711.05 SPBC1711.05 "nucleocytoplasmic transport chaperone Srp40 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 239 (89.2 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 83/345 (24%), Positives = 144/345 (41%)

Query:    98 ETCDNGSTVSSKKVQDSQKDGDSKRGK-EAESAAGVETVSKKKKKRSNEDVHTIVVQSED 156
             E  D+ S+ S  + + S +D DS     ++ES +  E         S+E   +    SED
Sbjct:   124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESS----SED 179

Query:   157 SGELANSKETEXXXXXXXXXXXXXXXLDSESLVNDVEVLGTEGKHGTKAKESESARDFLA 216
             +   ++S ++E                DSES   +    G++    + + ESES+ +   
Sbjct:   180 NDSSSSSSDSESESSSEDSDSSSSSS-DSES---ESSSEGSDSSSSSSSSESESSSEDND 235

Query:   217 TETTATNGNIASVEDEXXXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKT 276
             + +++++    S  ++                            E  S  ++S +  +++
Sbjct:   236 SSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSS-SDSSDSESES 294

Query:   277 SEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVE---ESKRRKTEGSEELKINDDQVNG 333
             S ED+ D     S      +SE+ +S  +     E   +S    T   E   + D+    
Sbjct:   295 SSEDS-DSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDED--- 350

Query:   334 TDKNEEKSAPNKTRKKQANGSAEP-KSVKA-FQRV-KVDEVEFTDERLKDNSYWAKDGAE 390
             + K  +KS   K    +++ S +  ++ K  F RV    + +F    L+DNS+  +D   
Sbjct:   351 SSKIHDKSLKRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFASPALRDNSFNFEDD-- 408

Query:   391 IGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 435
               YG  A   L   RG+ FR EK KKKRGSYRGG+I+ +  S KF
Sbjct:   409 --YGTLANRDLIVTRGKGFRQEKNKKKRGSYRGGRINTEVRSFKF 451

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0006605 "protein targeting" evidence=NAS

GO:0006913 "nucleocytoplasmic transport" evidence=ISM

UNIPROTKB|F1S8T1 NOLC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 83/346 (23%), Positives = 137/346 (39%)

Query:   108 SKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETE 167
             +KK  +S  D       E E+ A   + +K   K +     +I   +  S +   S +  
Sbjct:   364 AKKAAESSSDSSDSDSSEDEAPAKPASATKNSSKPAATPKQSIAKPATSSKQPVGSGQKP 423

Query:   168 XXXXXXXXXXXXXXXLDSESLVNDVEVLGTEGKHGTKAKESESARDFL--ATETTATNGN 225
                               +  +    V   + K   KA  S  A+       ++++ + +
Sbjct:   424 LTRKADSSSSEEESSSSEDEKMKKT-VATPKSKVTAKAAPSLPAKQASQGGGDSSSDSDS 482

Query:   226 IASVEDEXXXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEEDTTDKE 285
              +S E+E                            +Q    + S +  + +SEE+  DK 
Sbjct:   483 SSSEEEEEEKTSKTPAKKMPQKDVGAVAPSKPASAKQAKAESSSSSSSDDSSEEEEEDKP 542

Query:   286 RKGSKKRKRLASE---------EKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDK 336
              KG    K  A +         +      D  E EE K++   G  +      +      
Sbjct:   543 -KGKSTPKPQAPKANGTTALTAQNGKADRDSNEEEEDKKKAAVGVSKPGSGKKRKQNEAA 601

Query:   337 NEEKSAPNKTRKKQANGS------AEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAE 390
              E ++ P K  K Q   +       E +    F+R++ +E+E  D R+ DNS+ AK GA 
Sbjct:   602 KETETPPAKKIKPQTPNTFPKRKKGERRGSSPFRRIREEEIE-VDARVADNSFDAKRGAA 660

Query:   391 IGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 436
               +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +S+KF+
Sbjct:   661 GDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFD 706

GO:0015030 "Cajal body" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0023007001 hypothetical protein (272 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
pfam05022	72	pfam05022, SRP40_C, SRP40, C-terminal domain	2e-28
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	5e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002

>gnl|CDD|191166 pfam05022, SRP40_C, SRP40, C-terminal domain

 Score =  106 bits (267), Expect = 2e-28
 Identities = 44/75 (58%), Positives = 51/75 (68%), Gaps = 3/75 (4%)

Query: 361 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 420
           K F R+  +++EF DERLKDNSY  K G    YG KA E LG VRG+ F  EK KKKRGS
Sbjct: 1   KPFSRIDREKIEFEDERLKDNSYKGKAG---TYGEKANEDLGVVRGKGFTKEKNKKKRGS 57

Query: 421 YRGGQIDLQSHSVKF 435
           YRGG ID   +S+KF
Sbjct: 58  YRGGSIDSAVNSIKF 72

This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologues. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III. Length = 72

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 46 EQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEK 79
            +  L R +  YL  NG+ +T +    E+ +  
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 13/240 (5%)

Query: 107  SSKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKET 166
             SK    + K    K  K+ +          KK             +     +  ++K++
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKS 1218

Query: 167  EKEKSKQNNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNI 226
                S Q +  ++K K   +S V  ++         ++  +  S+ D             
Sbjct: 1219 NSSGSDQEDDEEQKTK-PKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKR 1277

Query: 227  ASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKER 286
             S    S                   +  SK     K  +   K      +      K  
Sbjct: 1278 VSAVQYS-------PPPPSKRPDGESNGGSKPSSPTK--KKVKKRLEGSLAALKKKKKSE 1328

Query: 287  KGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKT 346
            K + ++K+  +  K +  +         RR  +   +    DD  +  D +E++   +  
Sbjct: 1329 KKTARKKKSKTRVKQASASQ---SSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385

Length = 1388

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 5/217 (2%)

Query: 107  SSKKVQDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKET 166
              K+ +  +   D  +       +      +K+K     D         D  +    K  
Sbjct: 1175 KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTK 1234

Query: 167  EKEKSKQNNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNI 226
             K+ S +  K KK     S    ++        +   K      +    +    +   + 
Sbjct: 1235 PKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDG 1294

Query: 227  ASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKER 286
             S          KKK K       +     K     KS +  ++  ++KT  +  +  + 
Sbjct: 1295 ESNGGSKPSSPTKKKVKKRLEGSLAALKKKK-----KSEKKTARKKKSKTRVKQASASQS 1349

Query: 287  KGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEE 323
                +R R    +  SE +D  EV++S+    E  E+
Sbjct: 1350 SRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386

Length = 1388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
PF05022	72	SRP40_C: SRP40, C-terminal domain; InterPro: IPR00	99.97
KOG2992	446	consensus Nucleolar GTPase/ATPase p130 [Nuclear st	99.69
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	96.61
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	95.21

>PF05022 SRP40_C: SRP40, C-terminal domain; InterPro: IPR007718 This presumed domain is found at the C terminus of the Saccharomyces cerevisiae SRP40 protein P32583 from SWISSPROT and its homologues

Probab=99.97  E-value=4.1e-33  Score=224.49  Aligned_cols=72  Identities=65%  Similarity=0.927  Sum_probs=69.7

Q ss_pred             CCCccccCCcceeccccccCCcccccCCCCcchHHHHHhHhccccCCcccccccccccccccCceeecccceeeC
Q 013539          361 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF  435 (441)
Q Consensus       361 ~PFqRV~~e~v~f~D~~L~DNSy~ak~Ga~d~yG~KA~edL~~tRGKgFRkEKnKKKRGSYrGG~ID~svnSiKF  435 (441)
                      .|||||++++|+|+|++|+||||+++.   ++||+|||++|++||||+|||||||||||||+||+||++||||||
T Consensus         1 ~pF~RV~~~~v~~~d~~l~dNsy~~~~---~~~G~kA~~~L~~trGK~FrkEK~KkKRgsy~GG~Id~~v~SiKF   72 (72)
T PF05022_consen    1 KPFQRVDEEKVEFVDERLKDNSYEAKF---DGWGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGQIDTSVNSIKF   72 (72)
T ss_pred             CCCcccChhheeecCcccccCCCcccc---ChHHHHHHhhhccccCCCccccccccccccccCCeecCccceeeC
Confidence            499999999999999999999999885   799999999999999999999999999999999999999999999

SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.

>KOG2992 consensus Nucleolar GTPase/ATPase p130 [Nuclear structure]

Probab=99.69  E-value=7.1e-18  Score=172.46  Aligned_cols=79  Identities=48%  Similarity=0.699  Sum_probs=67.5

Q ss_pred             CCCCCCCccccCCcceeccccccCCcccccCCCCcchHHHHHhHhccccCCcccccccccccccccCceeecccceeeCC
Q 013539          357 PKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN  436 (441)
Q Consensus       357 ~k~~~PFqRV~~e~v~f~D~~L~DNSy~ak~Ga~d~yG~KA~edL~~tRGKgFRkEKnKKKRGSYrGG~ID~svnSiKFd  436 (441)
                      ..+..|||||++.++.|+-..   |+|..+.|+.++||.+|+++|++|||++|||+|||||||+||||.|++.+++|+|+
T Consensus       368 ~t~~~~~r~~~~~kd~~~~~~---~~~~~~~~~~~~wG~~An~~l~~~rGk~fr~eKtkkkRgsy~gG~I~~~~~s~kF~  444 (446)
T KOG2992|consen  368 ETKKSPFRRVDPVKDSRVEDI---LSDNKKDGAAGGWGKRANKDLGPGRGKDFRHEKTKKKRGSYRGGSITLDVNSIKFD  444 (446)
T ss_pred             ccCCCCccccccccccccccc---cccccccccccccccccccccccccccccccccccccCccccCCcccccccccccC
Confidence            344569999987776654333   55655568889999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 013539          437 YS  438 (441)
Q Consensus       437 DS  438 (441)
                      ++
T Consensus       445 ~~  446 (446)
T KOG2992|consen  445 LS  446 (446)
T ss_pred             CC
Confidence            75

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=96.61  E-value=0.0031  Score=41.27  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHhcChhHHHHHhhhhhccc
Q 013539           47 QKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIE   78 (441)
Q Consensus        47 ~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie   78 (441)
                      ++..|++.|++||.+.||..|...|+.|++++
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            35678899999999999999999999999875

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=95.21  E-value=0.026  Score=38.08  Aligned_cols=26  Identities=38%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcChhHHHHHhhhhh
Q 013539           50 LLLRSVAGYLKSNGFCKTLKKFLSEA   75 (441)
Q Consensus        50 ll~~siA~yLe~sGFskTlk~f~sEA   75 (441)
                      .|.+-|..||..+||..|-..|+.||
T Consensus         2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    2 ELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            47789999999999999999999986

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	96.82
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.56

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=96.82  E-value=0.0013  Score=54.79  Aligned_cols=39  Identities=33%  Similarity=0.555  Sum_probs=35.2

Q ss_pred             cCChhHHHHHHHHHHHHHHhcChhHHHHHhhhhhccccC
Q 013539           42 ALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKD   80 (441)
Q Consensus        42 a~~pe~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie~~   80 (441)
                      .|.+-|+.-||.||++||.++||+.++.+|+.|+.|..+
T Consensus         4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A            4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            467889999999999999999999999999999987643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.56  E-value=0.022  Score=52.84  Aligned_cols=36  Identities=36%  Similarity=0.593  Sum_probs=0.0

Q ss_pred             CChhHHHHHHHHHHHHHHhcChhHHHHHhhhhhccc
Q 013539           43 LKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIE   78 (441)
Q Consensus        43 ~~pe~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie   78 (441)
                      |.+.|+..|++.||+||...||..+|..|+.|+.+.
T Consensus         3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~   38 (410)
T 1vyh_C            3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELD   38 (410)
T ss_dssp             ------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence            567789999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	97.4

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=8e-05  Score=58.64  Aligned_cols=50  Identities=30%  Similarity=0.476  Sum_probs=40.7

Q ss_pred             CChhHHHHHHHHHHHHHHhcChhHHHHHhhhhhccccCCCCCCcccHHHHHHhhhh
Q 013539           43 LKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFE   98 (441)
Q Consensus        43 ~~pe~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie~~~~~~s~vdLeEm~~k~le   98 (441)
                      |.+-|+.-||.||++||.++||+.++.+|+.||.|.      ..-++.-.+.++||
T Consensus         2 Lt~rQ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~------~~~~~~~ky~glLE   51 (76)
T d1uuja_           2 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELD------MNEELDKKYAGLLE   51 (76)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCC------CCHHHHHHHTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHCCC------CChhhhhhhcCcch
Confidence            567799999999999999999999999999999873      22334556666677