Citrus Sinensis ID: 013540


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MSDSPAPSSNSDPGSISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYILH
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHEHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEHEHcHHHHHHEEHHHHHEHHccEEEc
msdspapssnsdpgsisavdqtggrsrrstdgsqtllsesrhwRDVFWLGIFVIHLIGLGFLLSVlglnrfkktdrfnisrytnqkvetkgeltedywpiyAVAGGVGALLGWMWLLLlgspanqmLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGtagvvasdmddgGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIhdgrdsvsmphnplvKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIrskignnecLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLItgtcagawtytkwhdrVVMVGSTAMLMGMVLVSFLLTtrknyilh
msdspapssnsdpgsisavdqtggrsrrstdgsqtllsesrHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFkktdrfnisrytnqkvetkgeltedyWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLlttrknyilh
MsdspapssnsdpgsISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYavaggvgallgwmwllllgSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRwwlllvlsvslFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYILH
****************************************RHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYI**
*******************************************RDVFWLGIFVIHLIGLGFLLSVLGLNRFKKT*************ETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYILH
************************************LSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYILH
************************************LSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYILH
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
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MSDSPAPSSNSDPGSISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLVSFLLTTRKNYILH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.854 0.679 0.282 2e-31
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.571 0.455 0.278 1e-16
Q75EG5553 Protein PNS1 OS=Ashbya go yes no 0.306 0.244 0.342 5e-16
Q6C938571 Protein PNS1 OS=Yarrowia yes no 0.532 0.411 0.289 1e-15
Q5AB93518 Protein PNS1 OS=Candida a N/A no 0.306 0.260 0.319 2e-15
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.365 0.299 0.314 2e-15
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.467 0.401 0.261 1e-14
Q12412539 Protein PNS1 OS=Saccharom yes no 0.326 0.267 0.315 1e-14
Q55CN8506 CTL-like protein DDB_G026 no no 0.485 0.422 0.244 1e-14
Q6FLC9557 Protein PNS1 OS=Candida g yes no 0.326 0.258 0.302 8e-14
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 203/414 (49%), Gaps = 37/414 (8%)

Query: 29  STDGSQTLLSESRHWRDVFWLGIFVIHLIGLGF-LLSVLGLNRFKKTDR--FNISRYTNQ 85
           S +  +T  +  + ++D+ W  I    L GL F LL V+  + F KT    ++ + Y N 
Sbjct: 122 SYNEGETKFAPPK-YQDI-WFSI----LFGLNFGLLIVVSASAFAKTPYTYYDSNYYDNT 175

Query: 86  KVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLC 145
              + G L    + I         L  W WL L  + A  ++K S      +   + ++ 
Sbjct: 176 SGGSFGFL----FAILPFTIVFSLLYIWAWLKLAANHAESLIKYS------FFGAMGLMI 225

Query: 146 FWCDQFF-WG-----VAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVA 199
            +C  FF WG     + FA  A    L+ IS   R+ FT  +L  AV ++   P V R  
Sbjct: 226 GYCVFFFVWGAIYLGIIFAIMAFFIILFYISCRSRIPFTATLLSNAVAIIKEYPSVIRAG 285

Query: 200 YVFMAVMLLWMGIWSFGTAGVVASDMDDGG-RWWLLLVLSVSLFWTGAVLCNTVHVIVSG 258
           YV + +  +W  +W  G+A    + +  G  +  + + L  +L+W   V+ NT+H  VSG
Sbjct: 286 YVSIFINFVWFIVW--GSAFARVNMVYTGAIQTCINIYLVFTLYWVFHVIKNTLHTTVSG 343

Query: 259 MVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKI 318
           ++       G + V MPHNP + S R A+TTS GSIC+GSL  + I TLR+  + +   I
Sbjct: 344 LLATWYFCSGPNGVGMPHNPTLGSARRALTTSFGSICFGSLIISLIETLRYLSQMM---I 400

Query: 319 GNNECLLCCVDFLFH----LVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
            N   ++  + ++F+    ++ ++V+FFN YA+  +A+YGK F  SA+  + +F++    
Sbjct: 401 NNRNVVVKIIGYIFNCILSMLSSIVQFFNTYAFTHVAIYGKSFCDSAKSTFTMFENRLGS 460

Query: 375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLV 428
            ++  +  G  + +G +V  L+  +  GA     + D  V  G+ A+ +G +++
Sbjct: 461 TIINDNFVGTTIAIGGLVASLLL-SILGALISIPF-DMSVYGGALALFIGYLVI 512





Dictyostelium discoideum (taxid: 44689)
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q75EG5|PNS1_ASHGO Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C938|PNS1_YARLI Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q5AB93|PNS1_CANAL Protein PNS1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|Q12412|PNS1_YEAST Protein PNS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PNS1 PE=1 SV=1 Back     alignment and function description
>sp|Q55CN8|CTLHC_DICDI CTL-like protein DDB_G0269978 OS=Dictyostelium discoideum GN=DDB_G0269978 PE=3 SV=1 Back     alignment and function description
>sp|Q6FLC9|PNS1_CANGA Protein PNS1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PNS1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
255576509497 Protein PNS1, putative [Ricinus communis 0.929 0.824 0.815 0.0
225423919504 PREDICTED: CTL-like protein DDB_G0274487 0.925 0.809 0.780 1e-180
42570212432 plasma-membrane choline transporter-like 0.968 0.988 0.752 1e-178
449434644502 PREDICTED: CTL-like protein DDB_G0274487 0.916 0.804 0.765 1e-177
356574175493 PREDICTED: CTL-like protein DDB_G0274487 0.929 0.831 0.760 1e-177
297845612488 hypothetical protein ARALYDRAFT_313379 [ 0.952 0.860 0.748 1e-176
15222609488 plasma-membrane choline transporter-like 0.952 0.860 0.748 1e-174
356498302459 PREDICTED: CTL-like protein DDB_G0274487 0.888 0.854 0.783 1e-174
357488431486 Choline transporter-like protein 5-A [Me 0.938 0.851 0.751 1e-173
356534376440 PREDICTED: CTL-like protein DDB_G0274487 0.839 0.840 0.791 1e-164
>gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/411 (81%), Positives = 363/411 (88%), Gaps = 1/411 (0%)

Query: 16  ISAVDQTGGRSRRSTDGSQTLLSE-SRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKT 74
           I+AVDQ   RS+RS    Q L  +  R W DVFWLGIF++HLIGLG  L++LGLNRFKK+
Sbjct: 14  IAAVDQNVRRSQRSDTAGQALAPDLPRRWHDVFWLGIFLLHLIGLGIALAILGLNRFKKS 73

Query: 75  DRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHIL 134
           DRF I R+T     +   LTEDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHIL
Sbjct: 74  DRFKIDRFTTGSSGSNRGLTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHIL 133

Query: 135 TTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPE 194
           TTYLAVISVLCFWC+QFFWGVAFA  AALQFLYVISVI+RL FTMLVLQKAVKMVWSLPE
Sbjct: 134 TTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLPE 193

Query: 195 VKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHV 254
           V RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVHV
Sbjct: 194 VMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVHV 253

Query: 255 IVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 314
           IVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG+
Sbjct: 254 IVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGL 313

Query: 315 RSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
           RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGVE
Sbjct: 314 RSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGVE 373

Query: 375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGM 425
           ALVAYDCSGAVLLMGT++ GLITGTC+G WT  KW+DRV+MVGSTAMLMGM
Sbjct: 374 ALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGM 424




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|42570212|ref|NP_849707.2| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192512|gb|AEE30633.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information
>gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] Back     alignment and taxonomy information
>gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.936 0.846 0.710 6.5e-154
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.839 0.666 0.269 3.2e-31
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.648 0.502 0.269 4.5e-26
DICTYBASE|DDB_G0269978506 DDB_G0269978 [Dictyostelium di 0.612 0.533 0.229 3.7e-15
CGD|CAL0005194518 orf19.6077 [Candida albicans ( 0.306 0.260 0.333 3.9e-15
UNIPROTKB|Q5AB93518 PNS1 "Protein PNS1" [Candida a 0.306 0.260 0.333 3.9e-15
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.412 0.341 0.326 1.2e-14
SGD|S000005687539 PNS1 "Protein of unknown funct 0.306 0.250 0.321 4.4e-13
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.632 0.578 0.233 1.8e-12
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.632 0.578 0.233 1.8e-12
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
 Identities = 294/414 (71%), Positives = 326/414 (78%)

Query:    16 ISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTD 75
             IS+ DQ+  RSRRS DG++ ++ ESRHW DVFW  IFVIHLI LGF+L+VLGLNRF+ +D
Sbjct:    17 ISSGDQSLQRSRRSGDGNRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGLNRFRISD 76

Query:    76 RFNISRYTNQKVETKGELTEDYWPIYXXXXXXXXXXXXXXXXXXXSPANQMLKISVHILT 135
             R NI RYT   +E    LTEDYWP+Y                   S AN+M+K+SVHILT
Sbjct:    77 RLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILT 136

Query:   136 TYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEV 195
             TYLAV+SVLCFWC  FFWG AFA  + LQFLYVISVIDRL FTMLVL+KA+K+VW LP+V
Sbjct:   137 TYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKV 196

Query:   196 KRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXXXXXXXXXXXFWTGAVLCNTVHVI 255
               VA+ F  VMLLWM +WSFG AGVVAS M D GR           FWTGAVLCNTVHVI
Sbjct:   197 IMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVI 256

Query:   256 VSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 314
             VSGMVF VL H G++ S S+P + LV SLRYAVTTS GSICYGSLFTAAIRTLRWEIRG 
Sbjct:   257 VSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGF 316

Query:   315 RSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
             RSKI  NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFN+SARDAWELFQSTGVE
Sbjct:   317 RSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVE 376

Query:   375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLV 428
             ALVAYDCSGAVLLMGTI GGLITG+C G W + K+ DRV+MV STAMLMGMVLV
Sbjct:   377 ALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLV 430




GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00030306001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (504 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 9e-68
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information
 Score =  218 bits (558), Expect = 9e-68
 Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 25/305 (8%)

Query: 152 FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 211
              + F     +  L +I +  R+   + +L+ A   V   P +  V  +    +  ++ 
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 212 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 256
           +W      +  S     ++GG               LL+ L   LFWT  V+    HV +
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 257 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 316
           +G+V            +MP  P + S + A+T S GSIC+GSL  A I+ +R  +  +R 
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178

Query: 317 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 371
           K+  ++      LLCC+      +E  V + N+ AYV IA+YGKGF  SA+D WEL +  
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238

Query: 372 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 428
           G+ ALV     G VL +G +    +TG  A  W     +  +    +  + A L+  ++ 
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298

Query: 429 SFLLT 433
           S  ++
Sbjct: 299 SVFMS 303


This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=2.3e-58  Score=485.77  Aligned_cols=334  Identities=31%  Similarity=0.522  Sum_probs=283.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------h---------------h--h
Q 013540           96 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D---------------Q--F  151 (441)
Q Consensus        96 ~~~~ll~~~~~ia~vls~~~l~llr~~~~~li~~~l~~~~~~~~~~~~~~~~~-------~---------------~--~  151 (441)
                      .+|+.....+.++.+++.+++.++|++++.++|....++.+.+......+++.       +               +  +
T Consensus       147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~  226 (577)
T KOG1362|consen  147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL  226 (577)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence            68888889999999999999999999999999987654444333333333321       0               0  1


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccceecc-----
Q 013540          152 --FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD-----  224 (441)
Q Consensus       152 --~~giv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~-----  224 (441)
                        ..||++.++.++.+++.+.+|+||+++++++|+++|++.+.|++.++|..+.++..+|..+|+.+..+....+     
T Consensus       227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g  306 (577)
T KOG1362|consen  227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG  306 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence              3689999999999999999999999999999999999999999999999999999888899998766554443     


Q ss_pred             -----cCCCc---hHHHHHHHHHHHHHHHHHHhhccccceeeeeeeeecccCCCCCCCCCchHHHHHHHHHhhchhhHHh
Q 013540          225 -----MDDGG---RWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICY  296 (441)
Q Consensus       225 -----~~~~~---~~~l~~~~~f~~~Wt~~vi~~v~~~tvAg~va~WYF~~~~~~~~~p~~~v~~s~~ra~t~sfGSI~~  296 (441)
                           .++++   .||++++..  ++|++||++|++|+++||++++|||++++  +++|..|+.+|++|+++||+||+|+
T Consensus       307 g~~~~~~~~~~~~~~~~~vv~~--l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~  382 (577)
T KOG1362|consen  307 GCACTYSGGSLRILFWLLVVGS--LIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICF  382 (577)
T ss_pred             CceeeccCCcchhHhHHHHHHH--HHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhh
Confidence                 12222   345554443  99999999999999999999999999875  6899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhcCC--c---chhHHHHHHHHHHHHHHHHHhcHhhHHHHHhcCCchhHHHHHHHHHHHhh
Q 013540          297 GSLFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST  371 (441)
Q Consensus       297 GSLIvaii~~lR~~l~~l~~~~~~--~---~~l~cc~~c~l~~le~~v~~~N~~Ayi~iAi~G~~F~~SAk~a~~L~~~n  371 (441)
                      |||++++++++|.++|++|++.|+  +   +|++||++||+||+|++++|+|||||+|+|+|||+||+||||||+|++||
T Consensus       383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N  462 (577)
T KOG1362|consen  383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN  462 (577)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence            999999999999999999998764  3   58999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhHHHHH-hhhhhhhhhhhhhhHHHHHHhcc--cchhhhHHHHHHH-HHHHHHHHHhh
Q 013540          372 GVEALVAYDCSGAVLLM-GTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVSFLLTTR  435 (441)
Q Consensus       372 ~~~ali~~~li~~~l~l-g~~~v~~~~~l~~g~~~y~~~~~--~~~~~~~~af~ig-~~~~~~~~~~~  435 (441)
                       +.+++++|.+++++++ ||+ .+.+++.+.|.+.+..+++  ++-++.+.+++|| |+++++++++-
T Consensus       463 -v~~vv~~d~vs~~llflgk~-l~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~  528 (577)
T KOG1362|consen  463 -VLRVVDVDLVSDFLLFLGKL-LGAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVL  528 (577)
T ss_pred             -HHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHH
Confidence             7789999999999875 555 4444444455565556666  6778999999999 99999999864



>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00