Citrus Sinensis ID: 013540
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 441 | ||||||
| 255576509 | 497 | Protein PNS1, putative [Ricinus communis | 0.929 | 0.824 | 0.815 | 0.0 | |
| 225423919 | 504 | PREDICTED: CTL-like protein DDB_G0274487 | 0.925 | 0.809 | 0.780 | 1e-180 | |
| 42570212 | 432 | plasma-membrane choline transporter-like | 0.968 | 0.988 | 0.752 | 1e-178 | |
| 449434644 | 502 | PREDICTED: CTL-like protein DDB_G0274487 | 0.916 | 0.804 | 0.765 | 1e-177 | |
| 356574175 | 493 | PREDICTED: CTL-like protein DDB_G0274487 | 0.929 | 0.831 | 0.760 | 1e-177 | |
| 297845612 | 488 | hypothetical protein ARALYDRAFT_313379 [ | 0.952 | 0.860 | 0.748 | 1e-176 | |
| 15222609 | 488 | plasma-membrane choline transporter-like | 0.952 | 0.860 | 0.748 | 1e-174 | |
| 356498302 | 459 | PREDICTED: CTL-like protein DDB_G0274487 | 0.888 | 0.854 | 0.783 | 1e-174 | |
| 357488431 | 486 | Choline transporter-like protein 5-A [Me | 0.938 | 0.851 | 0.751 | 1e-173 | |
| 356534376 | 440 | PREDICTED: CTL-like protein DDB_G0274487 | 0.839 | 0.840 | 0.791 | 1e-164 |
| >gi|255576509|ref|XP_002529146.1| Protein PNS1, putative [Ricinus communis] gi|223531425|gb|EEF33259.1| Protein PNS1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/411 (81%), Positives = 363/411 (88%), Gaps = 1/411 (0%)
Query: 16 ISAVDQTGGRSRRSTDGSQTLLSE-SRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKT 74
I+AVDQ RS+RS Q L + R W DVFWLGIF++HLIGLG L++LGLNRFKK+
Sbjct: 14 IAAVDQNVRRSQRSDTAGQALAPDLPRRWHDVFWLGIFLLHLIGLGIALAILGLNRFKKS 73
Query: 75 DRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHIL 134
DRF I R+T + LTEDYWP+YA+AGGVG +LGW WLLLLGS ANQM+KISVHIL
Sbjct: 74 DRFKIDRFTTGSSGSNRGLTEDYWPMYALAGGVGTVLGWTWLLLLGSRANQMMKISVHIL 133
Query: 135 TTYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPE 194
TTYLAVISVLCFWC+QFFWGVAFA AALQFLYVISVI+RL FTMLVLQKAVKMVWSLPE
Sbjct: 134 TTYLAVISVLCFWCEQFFWGVAFAIGAALQFLYVISVIERLPFTMLVLQKAVKMVWSLPE 193
Query: 195 VKRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRWWLLLVLSVSLFWTGAVLCNTVHV 254
V RVAY FM VMLLWM IWSFG AGVVAS M++GGRWWLL+VLSVSLFWTGAVLCNTVHV
Sbjct: 194 VMRVAYAFMLVMLLWMAIWSFGAAGVVASSMENGGRWWLLVVLSVSLFWTGAVLCNTVHV 253
Query: 255 IVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 314
IVSGMVFLVLIHDGR++ SMP NPL+KSLRYAVTTS GSICYGSLFTAAIRTLRWEIRG+
Sbjct: 254 IVSGMVFLVLIHDGREAASMPPNPLLKSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGL 313
Query: 315 RSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
RSKIG NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGK FN SARDAWELFQSTGVE
Sbjct: 314 RSKIGKNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNHSARDAWELFQSTGVE 373
Query: 375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGM 425
ALVAYDCSGAVLLMGT++ GLITGTC+G WT KW+DRV+MVGSTAMLMGM
Sbjct: 374 ALVAYDCSGAVLLMGTVLSGLITGTCSGVWTRIKWNDRVIMVGSTAMLMGM 424
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423919|ref|XP_002282011.1| PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera] gi|297737849|emb|CBI27050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|42570212|ref|NP_849707.2| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|332192512|gb|AEE30633.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449434644|ref|XP_004135106.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] gi|449527986|ref|XP_004170988.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356574175|ref|XP_003555227.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297845612|ref|XP_002890687.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] gi|297336529|gb|EFH66946.1| hypothetical protein ARALYDRAFT_313379 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15222609|ref|NP_173921.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] gi|12321513|gb|AAG50816.1|AC079281_18 unknown protein [Arabidopsis thaliana] gi|332192513|gb|AEE30634.1| plasma-membrane choline transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356498302|ref|XP_003517992.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357488431|ref|XP_003614503.1| Choline transporter-like protein 5-A [Medicago truncatula] gi|355515838|gb|AES97461.1| Choline transporter-like protein 5-A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356534376|ref|XP_003535731.1| PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 441 | ||||||
| TAIR|locus:2031235 | 488 | AT1G25500 [Arabidopsis thalian | 0.936 | 0.846 | 0.710 | 6.5e-154 | |
| DICTYBASE|DDB_G0274487 | 555 | DDB_G0274487 "Protein PNS1" [D | 0.839 | 0.666 | 0.269 | 3.2e-31 | |
| TAIR|locus:2177110 | 569 | AT5G13760 "AT5G13760" [Arabido | 0.648 | 0.502 | 0.269 | 4.5e-26 | |
| DICTYBASE|DDB_G0269978 | 506 | DDB_G0269978 [Dictyostelium di | 0.612 | 0.533 | 0.229 | 3.7e-15 | |
| CGD|CAL0005194 | 518 | orf19.6077 [Candida albicans ( | 0.306 | 0.260 | 0.333 | 3.9e-15 | |
| UNIPROTKB|Q5AB93 | 518 | PNS1 "Protein PNS1" [Candida a | 0.306 | 0.260 | 0.333 | 3.9e-15 | |
| ASPGD|ASPL0000039512 | 533 | AN10377 [Emericella nidulans ( | 0.412 | 0.341 | 0.326 | 1.2e-14 | |
| SGD|S000005687 | 539 | PNS1 "Protein of unknown funct | 0.306 | 0.250 | 0.321 | 4.4e-13 | |
| TAIR|locus:2079444 | 482 | AT3G03700 [Arabidopsis thalian | 0.632 | 0.578 | 0.233 | 1.8e-12 | |
| TAIR|locus:2100865 | 482 | AT3G04440 [Arabidopsis thalian | 0.632 | 0.578 | 0.233 | 1.8e-12 |
| TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
Identities = 294/414 (71%), Positives = 326/414 (78%)
Query: 16 ISAVDQTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTD 75
IS+ DQ+ RSRRS DG++ ++ ESRHW DVFW IFVIHLI LGF+L+VLGLNRF+ +D
Sbjct: 17 ISSGDQSLQRSRRSGDGNRAVVRESRHWHDVFWSAIFVIHLICLGFVLAVLGLNRFRISD 76
Query: 76 RFNISRYTNQKVETKGELTEDYWPIYXXXXXXXXXXXXXXXXXXXSPANQMLKISVHILT 135
R NI RYT +E LTEDYWP+Y S AN+M+K+SVHILT
Sbjct: 77 RLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILT 136
Query: 136 TYLAVISVLCFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEV 195
TYLAV+SVLCFWC FFWG AFA + LQFLYVISVIDRL FTMLVL+KA+K+VW LP+V
Sbjct: 137 TYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKV 196
Query: 196 KRVAYVFMAVMLLWMGIWSFGTAGVVASDMDDGGRXXXXXXXXXXXFWTGAVLCNTVHVI 255
VA+ F VMLLWM +WSFG AGVVAS M D GR FWTGAVLCNTVHVI
Sbjct: 197 IMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVI 256
Query: 256 VSGMVFLVLIHDGRD-SVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 314
VSGMVF VL H G++ S S+P + LV SLRYAVTTS GSICYGSLFTAAIRTLRWEIRG
Sbjct: 257 VSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGF 316
Query: 315 RSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVE 374
RSKI NECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFN+SARDAWELFQSTGVE
Sbjct: 317 RSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVE 376
Query: 375 ALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRVVMVGSTAMLMGMVLV 428
ALVAYDCSGAVLLMGTI GGLITG+C G W + K+ DRV+MV STAMLMGMVLV
Sbjct: 377 ALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLV 430
|
|
| DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269978 DDB_G0269978 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0005194 orf19.6077 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5AB93 PNS1 "Protein PNS1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005687 PNS1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00030306001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (504 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 441 | |||
| pfam04515 | 327 | pfam04515, Choline_transpo, Plasma-membrane cholin | 9e-68 |
| >gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 9e-68
Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 25/305 (8%)
Query: 152 FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMG 211
+ F + L +I + R+ + +L+ A V P + V + + ++
Sbjct: 1 IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60
Query: 212 IWSFGTAGVVAS---DMDDGGR------------WWLLLVLSVSLFWTGAVLCNTVHVIV 256
+W + S ++GG LL+ L LFWT V+ HV +
Sbjct: 61 LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120
Query: 257 SGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGIRS 316
+G+V +MP P + S + A+T S GSIC+GSL A I+ +R + +R
Sbjct: 121 AGVVATWYFA--GGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRR 178
Query: 317 KIGNNE-----CLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 371
K+ ++ LLCC+ +E V + N+ AYV IA+YGKGF SA+D WEL +
Sbjct: 179 KLKGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRN 238
Query: 372 GVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTKWHDRV---VMVGSTAMLMGMVLV 428
G+ ALV G VL +G + +TG A W + + + + A L+ ++
Sbjct: 239 GLRALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLIA 298
Query: 429 SFLLT 433
S ++
Sbjct: 299 SVFMS 303
|
This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 441 | |||
| KOG1362 | 577 | consensus Choline transporter-like protein [Lipid | 100.0 | |
| PF04515 | 334 | Choline_transpo: Plasma-membrane choline transport | 100.0 |
| >KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=485.77 Aligned_cols=334 Identities=31% Similarity=0.522 Sum_probs=283.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------h---------------h--h
Q 013540 96 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D---------------Q--F 151 (441)
Q Consensus 96 ~~~~ll~~~~~ia~vls~~~l~llr~~~~~li~~~l~~~~~~~~~~~~~~~~~-------~---------------~--~ 151 (441)
.+|+.....+.++.+++.+++.++|++++.++|....++.+.+......+++. + + +
T Consensus 147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~ 226 (577)
T KOG1362|consen 147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL 226 (577)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence 68888889999999999999999999999999987654444333333333321 0 0 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccceecc-----
Q 013540 152 --FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----- 224 (441)
Q Consensus 152 --~~giv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~----- 224 (441)
..||++.++.++.+++.+.+|+||+++++++|+++|++.+.|++.++|..+.++..+|..+|+.+..+....+
T Consensus 227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g 306 (577)
T KOG1362|consen 227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG 306 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 3689999999999999999999999999999999999999999999999999999888899998766554443
Q ss_pred -----cCCCc---hHHHHHHHHHHHHHHHHHHhhccccceeeeeeeeecccCCCCCCCCCchHHHHHHHHHhhchhhHHh
Q 013540 225 -----MDDGG---RWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICY 296 (441)
Q Consensus 225 -----~~~~~---~~~l~~~~~f~~~Wt~~vi~~v~~~tvAg~va~WYF~~~~~~~~~p~~~v~~s~~ra~t~sfGSI~~ 296 (441)
.++++ .||++++.. ++|++||++|++|+++||++++|||++++ +++|..|+.+|++|+++||+||+|+
T Consensus 307 g~~~~~~~~~~~~~~~~~vv~~--l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~ 382 (577)
T KOG1362|consen 307 GCACTYSGGSLRILFWLLVVGS--LIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICF 382 (577)
T ss_pred CceeeccCCcchhHhHHHHHHH--HHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhh
Confidence 12222 345554443 99999999999999999999999999875 6899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCC--c---chhHHHHHHHHHHHHHHHHHhcHhhHHHHHhcCCchhHHHHHHHHHHHhh
Q 013540 297 GSLFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 371 (441)
Q Consensus 297 GSLIvaii~~lR~~l~~l~~~~~~--~---~~l~cc~~c~l~~le~~v~~~N~~Ayi~iAi~G~~F~~SAk~a~~L~~~n 371 (441)
|||++++++++|.++|++|++.|+ + +|++||++||+||+|++++|+|||||+|+|+|||+||+||||||+|++||
T Consensus 383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N 462 (577)
T KOG1362|consen 383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN 462 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence 999999999999999999998764 3 58999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHH-hhhhhhhhhhhhhhHHHHHHhcc--cchhhhHHHHHHH-HHHHHHHHHhh
Q 013540 372 GVEALVAYDCSGAVLLM-GTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVSFLLTTR 435 (441)
Q Consensus 372 ~~~ali~~~li~~~l~l-g~~~v~~~~~l~~g~~~y~~~~~--~~~~~~~~af~ig-~~~~~~~~~~~ 435 (441)
+.+++++|.+++++++ ||+ .+.+++.+.|.+.+..+++ ++-++.+.+++|| |+++++++++-
T Consensus 463 -v~~vv~~d~vs~~llflgk~-l~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~ 528 (577)
T KOG1362|consen 463 -VLRVVDVDLVSDFLLFLGKL-LGAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVL 528 (577)
T ss_pred -HHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999875 555 4444444455565556666 6778999999999 99999999864
|
|
| >PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00