Citrus Sinensis ID: 013555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHccccccccccHHHHHHHHHHccEEEEEccEEEEEEcccEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHEEEEcccccccccccEEEEEccccccHHHEcHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccHcccHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHEEEEccccccEEEccc
Coil and Loop (DISEMBL)
mgsvssdddvsdqqsercgsyslsadvsesescssssfsgrrfdaegasssmtssprpvargfgfpvpvmvpviggkdvvvwdekpeksdtdLSEVEMMKERFAKLLlgedmsgggkGVCTALAISNAITNLSATVFGelwrleplapqKKAMWRREMQWLLCVSDSIVELvpsiqqfpgggtyevmatrprsdlymnlpaLKKLDAMLIGMLDGfcetefwyvdrgivvgdggdrdafssmvpsgrpsvrheekwwlpcpkvpqnglsEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLEtlpkngkacLGDIIYRYitadqfspeclldcldlssehhtLEVANRIEAAVHVWKQkdqrkhlshsksrrsswggkvkgLVADSEKNHSLAHRAETLLHSLrlrfpglpqtaldmnkiqynkgsqyLRATQG
Flexible Loop (DISEMBL)
mgsvssdddvsdqqseRCGSyslsadvsesescssssfsgrrfdaegasssmtssprpvARGFGFPVPVMVPVIGGkdvvvwdekpeksdtdlsevEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPsiqqfpgggtYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVpsgrpsvrheekwwlpcpkvpqnGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWkqkdqrkhlshsksrrsswggkvKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQG
Low Complexity Region (SEG)
MGsvssdddvsdqqsERCGsyslsadvsesescssssfsGRRFDAEGASSSMTSSPRPVARgfgfpvpvmvpviggKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYvdrgivvgdggdrdAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQrkhlshsksrrssWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQG
Disordered region (IsUnstruct)
************************************************************RGFGFPVPVMVPVIGGKDVVVWD******************RFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGG*******************EKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWK***************************************ETLLHSLRLRFPGLPQTALDM**I**************
Disordered Region (DISOPRED)
**********************************************************************************************************************VCTALAISNAITNLSATVFGELWRLEPLAPQ**AMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRG***************************KWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVW***************************ADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQ*
Disordered Region (DISEMBL)
********************************************************RPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSM**********EEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHV**********************KVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQG
Disordered Region (DISPRO)
*******************************************************************PVMVPVI**KDVVVW***PEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRG*************************EEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQR*****************KGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRAT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKGSQYLRATQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q93ZY2	548	Rop guanine nucleotide ex	yes	no	0.950	0.764	0.773	0.0
Q9LQ89	485	Rop guanine nucleotide ex	no	no	0.736	0.670	0.545	3e-95
Q9LV40	523	Rho guanine nucleotide ex	no	no	0.727	0.613	0.511	7e-94

>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/432 (77%), Positives = 372/432 (86%), Gaps = 13/432 (3%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGS+SS++D  +  SERCGSYS SAD+SESES SS S    RFD EGASSS+ SSPR VA
Sbjct: 1   MGSLSSEED-DEVSSERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVA 57

Query: 61  -RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
            RGF FP PVM+PVIGGKDVV WD+K  + D DLSE+EMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58  GRGFYFPAPVMLPVIGGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGV 114

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFP 174

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYE+M TRPRSDLY NLPALKKLDAMLI MLD F +TEFWY DRGIV+GD  D+D++
Sbjct: 175 GGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDC-DKDSY 233

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
           +S       SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLA
Sbjct: 234 NSPA-----SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLA 288

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP  YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAA
Sbjct: 289 EMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAA 348

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQ 419
           VHVW+QK+ R+H   +K + SSWGGKVKGLV D+E+N  L  RAETLL SLR+RFPGLPQ
Sbjct: 349 VHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQ 408

Query: 420 TALDMNKIQYNK 431
           T LDMNKIQYNK
Sbjct: 409 TTLDMNKIQYNK 420

Acts as an activator of Rop GTPases by exchanging GDP with GTP. Stimulates Rop1 to control polarized pollen tube growth.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2

 Score =  348 bits (894), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 187/343 (54%), Positives = 240/343 (69%), Gaps = 18/343 (5%)

Query: 95  EVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154
           E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  RLEPL  ++K  W
Sbjct: 116 ELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTW 175

Query: 155 RREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLD 214
           +REM  LL V D I E +P  Q    G T EVM +RPR+D+Y+NLPAL+KLD+ML+  LD
Sbjct: 176 KREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 235

Query: 215 GFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSV--RHEEKWWLPCPKVPQNGLSEDV 272
            F +TEFWY + G +        +  S   S R  +  R EEKWWLP P VP  GLSE  
Sbjct: 236 SFQKTEFWYAEEGSL-----SMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKA 290

Query: 273 RKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-Q 331
           RK+L+  R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA  GD IYR++T+  +
Sbjct: 291 RKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGR 350

Query: 332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVA 391
           FSPE LLD L + SEH  L++A+R+EA+++ W++K     L++SK   SSW   VK L++
Sbjct: 351 FSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK---ACLNNSK---SSW-NMVKDLMS 403

Query: 392 DSE---KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
            +E   KN+ LA RAE+LL  L+ R+P L QT+LD+ KI  NK
Sbjct: 404 ITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNK 446

Acts as an activator of Rop GTPases by exchanging GDP with GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1

 Score =  344 bits (883), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 177/346 (51%), Positives = 231/346 (66%), Gaps = 25/346 (7%)

Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+
Sbjct: 77  KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 136

Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLD
Sbjct: 137 PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 196

Query: 207 AMLIGMLDGF-CETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           AMLI  LD F    EFWYV R    G     D             R  +KWWLP  KVP 
Sbjct: 197 AMLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 243

Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 244 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 303

Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
            IT + F PE  L  LD+S+EH  L++ NRIEA+V +WK+K       H+K  +SSWG  
Sbjct: 304 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 357

Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NK
Sbjct: 358 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNK 398

Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop GTPases by exchanging GDP with GTP. Active as homodimer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
225428257	587	PREDICTED: rop guanine nucleotide exchan	0.970	0.729	0.846	0.0
224103115	577	predicted protein [Populus trichocarpa]	0.972	0.743	0.834	0.0
224080678	576	predicted protein [Populus trichocarpa]	0.972	0.744	0.818	0.0
255575043	580	Rop guanine nucleotide exchange factor,	0.965	0.734	0.817	0.0
356538528	566	PREDICTED: rop guanine nucleotide exchan	0.947	0.738	0.811	0.0
356544030	562	PREDICTED: rop guanine nucleotide exchan	0.938	0.736	0.808	0.0
356544032	568	PREDICTED: rop guanine nucleotide exchan	0.938	0.728	0.797	0.0
332688639	558	RopGEF1 [Medicago truncatula]	0.938	0.741	0.792	0.0
449444380	570	PREDICTED: rop guanine nucleotide exchan	0.963	0.745	0.781	0.0
15810309	548	unknown protein [Arabidopsis thaliana]	0.950	0.764	0.773	0.0

>gi|225428257|ref|XP_002282312.1| PREDICTED: rop guanine nucleotide exchange factor 1 [Vitis vinifera] gi|297744497|emb|CBI37759.3| unnamed protein product [Vitis vinifera]

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/436 (84%), Positives = 392/436 (89%), Gaps = 8/436 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSP---R 57
           MGSVSS++ V D QS+RCGSYSLSADVSESES   SSFS RR+D EGASSSMTSSP   R
Sbjct: 1   MGSVSSEEGV-DDQSDRCGSYSLSADVSESES--CSSFSCRRYDGEGASSSMTSSPLACR 57

Query: 58  PVARGFGFPV--PVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGG 115
           PV     FPV  P+M+PVIGG+DVVVW EKPEK +TDLSE EMMKERFAKLLLGEDMSGG
Sbjct: 58  PVVGNSSFPVGPPLMLPVIGGRDVVVWGEKPEKRETDLSEAEMMKERFAKLLLGEDMSGG 117

Query: 116 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSI 175
           GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW REM+WLLCVSDSIVELVPSI
Sbjct: 118 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWCREMEWLLCVSDSIVELVPSI 177

Query: 176 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGD 235
           QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAML+ MLDGFCETEFWYVDRGI+V +  +
Sbjct: 178 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLLSMLDGFCETEFWYVDRGIIVAEADN 237

Query: 236 RDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINS 295
            DA+     SGRPS+R EEKWWLPCPKVP NGLSED RK+LQQCRDCTNQILKAAMAINS
Sbjct: 238 HDAYPLSASSGRPSIRQEEKWWLPCPKVPPNGLSEDARKRLQQCRDCTNQILKAAMAINS 297

Query: 296 SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANR 355
           SVLAEMEIP AYLETLPKNGKACLGDIIYRYITA+QFSPECLLDCLDLSSEHHTLE+ANR
Sbjct: 298 SVLAEMEIPTAYLETLPKNGKACLGDIIYRYITAEQFSPECLLDCLDLSSEHHTLEIANR 357

Query: 356 IEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP 415
           IEAAVHVWKQKD +K   H K++RS+WGGKVKGLVAD+EKN  LA RAETLLHSLRLRFP
Sbjct: 358 IEAAVHVWKQKDWKKQPKHLKAKRSTWGGKVKGLVADTEKNQFLAIRAETLLHSLRLRFP 417

Query: 416 GLPQTALDMNKIQYNK 431
           GLPQTALDMNKIQYNK
Sbjct: 418 GLPQTALDMNKIQYNK 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103115|ref|XP_002312931.1| predicted protein [Populus trichocarpa] gi|222849339|gb|EEE86886.1| predicted protein [Populus trichocarpa]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/436 (83%), Positives = 386/436 (88%), Gaps = 7/436 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSS-SFSGRR---FDAEGASSSMTSSP 56
           MGSVSSDDD     SERCGSYSLSADVSESESC+SS +FS RR    D   ASSSMTSSP
Sbjct: 1   MGSVSSDDDGGG--SERCGSYSLSADVSESESCTSSSNFSCRRGLGRDGGCASSSMTSSP 58

Query: 57  RPVARGFGFPVPVMVPVIGGKDVVVWDEKPEKS-DTDLSEVEMMKERFAKLLLGEDMSGG 115
           RPVA GF FP PVMVPVIGGKDVVVW  K EK  +TDLSEVEMMKERFAKLLLGEDMSGG
Sbjct: 59  RPVAGGFCFPAPVMVPVIGGKDVVVWGSKNEKRRETDLSEVEMMKERFAKLLLGEDMSGG 118

Query: 116 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSI 175
           GKGVCTALAISNAITNLSATVFGELWRLEPL PQKK+MW+REM+WLLCVSDSIVELVPS+
Sbjct: 119 GKGVCTALAISNAITNLSATVFGELWRLEPLLPQKKSMWKREMEWLLCVSDSIVELVPSM 178

Query: 176 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGD 235
           QQFPGGGTYEVMATRPRSDLY+NLPALKKLDAMLI MLDGFCETEFWYVDRGIVV DGGD
Sbjct: 179 QQFPGGGTYEVMATRPRSDLYVNLPALKKLDAMLISMLDGFCETEFWYVDRGIVVADGGD 238

Query: 236 RDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINS 295
            DA+ S +  GRPS+R EEKWWLPCPKVP NGLS+D RK+LQQCRDCTNQILKAAMAINS
Sbjct: 239 CDAYPSGISGGRPSIRQEEKWWLPCPKVPPNGLSDDARKRLQQCRDCTNQILKAAMAINS 298

Query: 296 SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANR 355
           SVL EMEIP AY+ETLPKNGKACLGDIIYRYITA+QFSP+ LLDCLDLS+EHHTLE+ANR
Sbjct: 299 SVLVEMEIPTAYMETLPKNGKACLGDIIYRYITAEQFSPDRLLDCLDLSTEHHTLEIANR 358

Query: 356 IEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP 415
           IEAAVHVWKQKD +KH  + + + SSWGGKVKG V DS KN  LA RAETLL SLRLRFP
Sbjct: 359 IEAAVHVWKQKDHKKHTHNMRIKHSSWGGKVKGFVTDSHKNQILAQRAETLLQSLRLRFP 418

Query: 416 GLPQTALDMNKIQYNK 431
           GLPQT LDMNKIQYNK
Sbjct: 419 GLPQTTLDMNKIQYNK 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080678|ref|XP_002306208.1| predicted protein [Populus trichocarpa] gi|222849172|gb|EEE86719.1| predicted protein [Populus trichocarpa]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/436 (81%), Positives = 382/436 (87%), Gaps = 7/436 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRF----DAEGASSSMTSSP 56
           MGSVSSDDD     SERCGSYSLSADVSESESC+S+S    R     D    SSSMTSSP
Sbjct: 1   MGSVSSDDDGGG--SERCGSYSLSADVSESESCTSTSSFSCRRGFGRDGGAVSSSMTSSP 58

Query: 57  RPVARGFGFPVPVMVPVIGGKDVVVWDEKPEK-SDTDLSEVEMMKERFAKLLLGEDMSGG 115
           RP+  GF FP PVMVPVIGGKDVVVWD K EK  D DLSEVEMMKERFAKLLLGEDMSGG
Sbjct: 59  RPLPGGFCFPAPVMVPVIGGKDVVVWDSKNEKRGDADLSEVEMMKERFAKLLLGEDMSGG 118

Query: 116 GKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSI 175
           GKGVCTALAISNAITNLSATVFGELWRLEPLA QKK+MW+REM+WLLCVSDSIVELVPSI
Sbjct: 119 GKGVCTALAISNAITNLSATVFGELWRLEPLALQKKSMWKREMEWLLCVSDSIVELVPSI 178

Query: 176 QQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGD 235
           QQFPGGGTYEVMATRPRSDLY+NLPALKKLDAMLI MLDGF ETEFWY DRGIVVGDGGD
Sbjct: 179 QQFPGGGTYEVMATRPRSDLYVNLPALKKLDAMLITMLDGFSETEFWYADRGIVVGDGGD 238

Query: 236 RDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINS 295
            D + S +  GRPS+R E+KWWLPCPKVP +GLSED RK+LQQCRDCTNQILKAAMAINS
Sbjct: 239 CDTYPSGISGGRPSIRQEDKWWLPCPKVPPDGLSEDARKRLQQCRDCTNQILKAAMAINS 298

Query: 296 SVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANR 355
           SVL EMEIP AY+ETLPKNGKACLGDIIYRYITA++FSPECLLDCLDLS+EHHTLE+ANR
Sbjct: 299 SVLVEMEIPTAYMETLPKNGKACLGDIIYRYITAEKFSPECLLDCLDLSTEHHTLEIANR 358

Query: 356 IEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFP 415
           +EAAVH+WKQKD RKH+ +   + SSWGGKVKG VAD+ KN  LA RAETLL SLRLR+P
Sbjct: 359 VEAAVHIWKQKDHRKHIHNKNIKHSSWGGKVKGFVADTHKNQILAQRAETLLQSLRLRYP 418

Query: 416 GLPQTALDMNKIQYNK 431
           GLPQTALDMNKIQYNK
Sbjct: 419 GLPQTALDMNKIQYNK 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575043|ref|XP_002528427.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis] gi|223532163|gb|EEF33969.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/434 (81%), Positives = 388/434 (89%), Gaps = 8/434 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRR-FDAEGASSSMTSSP-RP 58
           MGSVSSDD   D+QSERCGSYSLSADVSESES +SSSF  RR FD EGAS+S+TSSP  P
Sbjct: 9   MGSVSSDDG-GDEQSERCGSYSLSADVSESESSTSSSFWCRRGFDGEGASTSITSSPPLP 67

Query: 59  VARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKG 118
            +  F F      P++  KD+++WD KPEK DTDLSEVEMMKERFAKLLLGEDMSGGGKG
Sbjct: 68  SSAKFCF----QTPLLLPKDLLLWDIKPEKRDTDLSEVEMMKERFAKLLLGEDMSGGGKG 123

Query: 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQF 178
           VCTALAISNAITNLSATVFGELWRLEPLAPQKK+MWRREM+WLLCVSDSIVELVPS+QQF
Sbjct: 124 VCTALAISNAITNLSATVFGELWRLEPLAPQKKSMWRREMEWLLCVSDSIVELVPSVQQF 183

Query: 179 PGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDA 238
           PGGGTYE+MA +PRSDLY+NLPALKKLDAMLI MLDGFCETEFWYVDRGI++ DG D D 
Sbjct: 184 PGGGTYEIMAAQPRSDLYVNLPALKKLDAMLISMLDGFCETEFWYVDRGIILADGADNDV 243

Query: 239 FSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVL 298
           + S   +GRPS+R EEKWWLPCPK+P NGLSED RK+LQQCRDCTNQILKAAMAINSSVL
Sbjct: 244 YPSGFSTGRPSIRQEEKWWLPCPKLPSNGLSEDARKRLQQCRDCTNQILKAAMAINSSVL 303

Query: 299 AEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEA 358
           AEMEIP AYLETLPK GKACLGDIIYRYITA+QFSPECLLDCLDLS+EHHTLE+ANRIEA
Sbjct: 304 AEMEIPTAYLETLPKCGKACLGDIIYRYITAEQFSPECLLDCLDLSTEHHTLEIANRIEA 363

Query: 359 AVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSE-KNHSLAHRAETLLHSLRLRFPGL 417
           A+HVWKQKDQRKH SH+K+R +SWGGKVKGLVAD++ KN  LA RAETLL SLRLRFPGL
Sbjct: 364 ALHVWKQKDQRKHTSHTKARHTSWGGKVKGLVADTKRKNTFLAQRAETLLQSLRLRFPGL 423

Query: 418 PQTALDMNKIQYNK 431
           PQTALDM+KIQYNK
Sbjct: 424 PQTALDMHKIQYNK 437

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538528|ref|XP_003537755.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Glycine max]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/434 (81%), Positives = 380/434 (87%), Gaps = 16/434 (3%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D  SD  S RCGSYSLSADVSESES   SSFS RRFDAEGASSS   SPRPVA
Sbjct: 1   MGSVSSED-ASDHMSNRCGSYSLSADVSESES--CSSFSARRFDAEGASSSANLSPRPVA 57

Query: 61  RGFGFP-VPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
             F FP   V++PVIGGKDV VWD K    D DLSEVEMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58  AHFNFPPAQVLLPVIGGKDVFVWDHK---RDLDLSEVEMMKERFAKLLLGEDMSGGGKGV 114

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREM+WLLCVSDSIVELVPS+QQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQFP 174

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGF +T+FWYVDRGI++GD  D DA+
Sbjct: 175 GGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLDGFHDTQFWYVDRGIILGDSKDCDAY 234

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
                 GRPSVR EEKWWLP PK+P NGLSE+ RK+LQQCRDCTNQILKAA+AIN+SVLA
Sbjct: 235 ------GRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLA 288

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP AY+E+LPKNGKACLGDIIYRY+TADQFSPECLLDCLDLSSEHHTL++ANRIEAA
Sbjct: 289 EMEIPGAYIESLPKNGKACLGDIIYRYLTADQFSPECLLDCLDLSSEHHTLDIANRIEAA 348

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHS--LAHRAETLLHSLRLRFPGL 417
           +HVW+ KD +KHLS +KSRR  WGGKVKGLVADSEKN +  LA RAETLL SL+ RFPGL
Sbjct: 349 IHVWRLKDHKKHLSSAKSRR-PWGGKVKGLVADSEKNKNNFLAQRAETLLESLKHRFPGL 407

Query: 418 PQTALDMNKIQYNK 431
           PQTALDM KIQYNK
Sbjct: 408 PQTALDMAKIQYNK 421

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544030|ref|XP_003540459.1| PREDICTED: rop guanine nucleotide exchange factor 1-like isoform 1 [Glycine max]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/434 (80%), Positives = 379/434 (87%), Gaps = 20/434 (4%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D      S+RCGSYSLSADVSESES   SSFS RRFDAEGASSS   SPRPVA
Sbjct: 1   MGSVSSEDG-----SDRCGSYSLSADVSESES--CSSFSARRFDAEGASSSANLSPRPVA 53

Query: 61  RGFGFP-VPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
             F FP   VM+PVIGGKDVVVWD K    D DLSEVEMMKERFAKLLLGEDMSGGGKGV
Sbjct: 54  AHFNFPPAQVMLPVIGGKDVVVWDHK---RDLDLSEVEMMKERFAKLLLGEDMSGGGKGV 110

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKK MWRREM+WLLCVSDSIVELVPS+QQFP
Sbjct: 111 CTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVPSVQQFP 170

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGF +T+FWYVDRGI++GD  D DA+
Sbjct: 171 GGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDSKDCDAY 230

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
                 GRPSVR EEKWWLP PK+P NGLSE+ RK+LQQCRDCTNQILKAA+AIN+SVLA
Sbjct: 231 ------GRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLA 284

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP AY+E+LPKNGKACLGDIIYRYITADQFSPECLLDCLDLS+EHHTL++ANRIEAA
Sbjct: 285 EMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIANRIEAA 344

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHS--LAHRAETLLHSLRLRFPGL 417
           +HVW+ KD +KHLS +KSRR SWGGKVKGLVAD EKN +  LA RAETLL SL+ RFPGL
Sbjct: 345 IHVWRLKDHKKHLSSAKSRR-SWGGKVKGLVADGEKNKNNFLAQRAETLLESLKHRFPGL 403

Query: 418 PQTALDMNKIQYNK 431
           PQTALDM KIQYNK
Sbjct: 404 PQTALDMAKIQYNK 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544032|ref|XP_003540460.1| PREDICTED: rop guanine nucleotide exchange factor 1-like isoform 2 [Glycine max]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/440 (79%), Positives = 379/440 (86%), Gaps = 26/440 (5%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D      S+RCGSYSLSADVSESES   SSFS RRFDAEGASSS   SPRPVA
Sbjct: 1   MGSVSSEDG-----SDRCGSYSLSADVSESES--CSSFSARRFDAEGASSSANLSPRPVA 53

Query: 61  RGFGFP-VPVMVPVIGGKDVVVWDEKPEKSDTDLSE------VEMMKERFAKLLLGEDMS 113
             F FP   VM+PVIGGKDVVVWD K    D DLSE      VEMMKERFAKLLLGEDMS
Sbjct: 54  AHFNFPPAQVMLPVIGGKDVVVWDHK---RDLDLSEQLHFAEVEMMKERFAKLLLGEDMS 110

Query: 114 GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVP 173
           GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKK MWRREM+WLLCVSDSIVELVP
Sbjct: 111 GGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVP 170

Query: 174 SIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDG 233
           S+QQFPGGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGF +T+FWYVDRGI++GD 
Sbjct: 171 SVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDS 230

Query: 234 GDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAI 293
            D DA+      GRPSVR EEKWWLP PK+P NGLSE+ RK+LQQCRDCTNQILKAA+AI
Sbjct: 231 KDCDAY------GRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAI 284

Query: 294 NSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVA 353
           N+SVLAEMEIP AY+E+LPKNGKACLGDIIYRYITADQFSPECLLDCLDLS+EHHTL++A
Sbjct: 285 NTSVLAEMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIA 344

Query: 354 NRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHS--LAHRAETLLHSLR 411
           NRIEAA+HVW+ KD +KHLS +KSRR SWGGKVKGLVAD EKN +  LA RAETLL SL+
Sbjct: 345 NRIEAAIHVWRLKDHKKHLSSAKSRR-SWGGKVKGLVADGEKNKNNFLAQRAETLLESLK 403

Query: 412 LRFPGLPQTALDMNKIQYNK 431
            RFPGLPQTALDM KIQYNK
Sbjct: 404 HRFPGLPQTALDMAKIQYNK 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332688639|gb|AEE89672.1| RopGEF1 [Medicago truncatula]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/433 (79%), Positives = 368/433 (84%), Gaps = 19/433 (4%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSS+D      SERCGSYS SAD+SESES  SSSF GRRFDAEGASSS   SPR +A
Sbjct: 1   MGSVSSED-----VSERCGSYSPSADISESES--SSSFYGRRFDAEGASSSANLSPRQLA 53

Query: 61  RGFGFPVP--VMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKG 118
             F  P    VM+PVIGGKDV VWD K    D DL+EVEMMKERFAKLLLGEDMSGGGKG
Sbjct: 54  AHFNLPATAQVMLPVIGGKDVAVWDHK---RDLDLTEVEMMKERFAKLLLGEDMSGGGKG 110

Query: 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQF 178
           VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREM+WLLCVSDSIVELVPS+QQF
Sbjct: 111 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQF 170

Query: 179 PGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDA 238
           PGGGTYEVMATRPRSDLY+NLPALKKLD ML+ MLDGFC+T+FWYVDRGIV+GD  D D 
Sbjct: 171 PGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLDGFCDTQFWYVDRGIVLGDSKDCDD 230

Query: 239 FSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVL 298
           +      GRPSVR EEKWWLP PK+P NGL ED RK+LQQCRDCTNQILKAAMAINSSVL
Sbjct: 231 Y------GRPSVRQEEKWWLPSPKLPPNGLCEDDRKRLQQCRDCTNQILKAAMAINSSVL 284

Query: 299 AEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEA 358
           AEMEIPAAY+E+LP+NGKACLGDIIYRYITA QFS ECLLDCLDLSSEHHT ++ANRIEA
Sbjct: 285 AEMEIPAAYVESLPRNGKACLGDIIYRYITAGQFSSECLLDCLDLSSEHHTQDIANRIEA 344

Query: 359 AVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLP 418
           A+HVW+ KD +K     K+RR SWGGKVK LVAD EKNH L  RAETLL SL+ RFPGLP
Sbjct: 345 AIHVWRLKDYKKLKKSGKARR-SWGGKVKSLVADGEKNHFLVQRAETLLQSLKRRFPGLP 403

Query: 419 QTALDMNKIQYNK 431
           QTALDM KIQYNK
Sbjct: 404 QTALDMAKIQYNK 416

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444380|ref|XP_004139953.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Cucumis sativus] gi|449475751|ref|XP_004154542.1| PREDICTED: rop guanine nucleotide exchange factor 1-like [Cucumis sativus]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/431 (78%), Positives = 380/431 (88%), Gaps = 6/431 (1%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGSVSSDD  SDQ S+RCGSYSLSADVSESES   SSFS RRFD EGASSSM SSP PV+
Sbjct: 1   MGSVSSDDG-SDQLSDRCGSYSLSADVSESES--CSSFSCRRFDGEGASSSMASSPHPVS 57

Query: 61  RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVC 120
             F FP PV +PV+GGKDV VWD+K +K + DLSEVEMMKERFAKLLLGEDMSGGGKGVC
Sbjct: 58  ANFCFPPPVSLPVLGGKDVFVWDDKSKKREADLSEVEMMKERFAKLLLGEDMSGGGKGVC 117

Query: 121 TALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPG 180
           TALAISNAITNLSA+VFGELWRLEPLAPQK+AMW REM+WLLCV DSIVELVP++Q FPG
Sbjct: 118 TALAISNAITNLSASVFGELWRLEPLAPQKRAMWHREMEWLLCVCDSIVELVPTVQPFPG 177

Query: 181 GGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFS 240
           GGTYEVM ++PRSDL+MNLPALKKLDA+L+G+L GFC TEFWYVDRGIV+GD  D + F 
Sbjct: 178 GGTYEVMMSKPRSDLHMNLPALKKLDALLLGILGGFCHTEFWYVDRGIVLGDLNDCNDF- 236

Query: 241 SMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAE 300
             +P GRPS+R E+KWWLPCPKVP +GLSED RK+LQQCRDCTNQILKAAMAINS+VLAE
Sbjct: 237 --LPGGRPSIRQEDKWWLPCPKVPADGLSEDARKRLQQCRDCTNQILKAAMAINSNVLAE 294

Query: 301 MEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAV 360
           ME+PAAY+ETLPK+GKACLGDIIYRY+TAD FSPECLLDCLDLSSEHHTLE+ANRIEA++
Sbjct: 295 MEVPAAYMETLPKSGKACLGDIIYRYMTADHFSPECLLDCLDLSSEHHTLEIANRIEASI 354

Query: 361 HVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQT 420
           H+W+QKD ++    +K RR +W GKVKG+V D  K+++LA RAETLL SLRLRFPGLPQT
Sbjct: 355 HIWRQKDHKRSGHRNKGRRPTWSGKVKGIVGDPRKSNNLARRAETLLDSLRLRFPGLPQT 414

Query: 421 ALDMNKIQYNK 431
           ALDM KIQYNK
Sbjct: 415 ALDMAKIQYNK 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15810309|gb|AAL07042.1| unknown protein [Arabidopsis thaliana]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/432 (77%), Positives = 372/432 (86%), Gaps = 13/432 (3%)

Query: 1   MGSVSSDDDVSDQQSERCGSYSLSADVSESESCSSSSFSGRRFDAEGASSSMTSSPRPVA 60
           MGS+SS++D  +  SERCGSYS SAD+SESES SS S    RFD EGASSS+ SSPR VA
Sbjct: 1   MGSLSSEED-DEVSSERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVA 57

Query: 61  -RGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGV 119
            RGF FP PVM+PVIGGKDVV WD+K  + D DLSE+EMMKERFAKLLLGEDMSGGGKGV
Sbjct: 58  GRGFYFPAPVMLPVIGGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGV 114

Query: 120 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFP 179
           CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFP
Sbjct: 115 CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFP 174

Query: 180 GGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAF 239
           GGGTYE+M TRPRSDLY NLPALKKLDAMLI MLD F +TEFWY DRGIV+GD  D+D++
Sbjct: 175 GGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDC-DKDSY 233

Query: 240 SSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLA 299
           +S       SVR E+KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLA
Sbjct: 234 NSPA-----SVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLA 288

Query: 300 EMEIPAAYLETLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAA 359
           EMEIP  YLETLPK+GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAA
Sbjct: 289 EMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAA 348

Query: 360 VHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQ 419
           VHVW+QK+ R+H   +K + SSWGGKVKGLV D+E+N  L  RAETLL SLR+RFPGLPQ
Sbjct: 349 VHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQ 408

Query: 420 TALDMNKIQYNK 431
           T LDMNKIQYNK
Sbjct: 409 TTLDMNKIQYNK 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2121828	548	ROPGEF1 "ROP (rho of plants) g	0.918	0.739	0.690	2.8e-146
TAIR|locus:2185153	546	ROPGEF7 "ROP (rho of plants) g	0.773	0.624	0.610	2.3e-110
TAIR|locus:2153684	611	ROPGEF5 "ROP (rho of plants) g	0.789	0.569	0.55	5.4e-102
TAIR|locus:2078976	579	ROPGEF6 "ROP (rho of plants) g	0.750	0.571	0.547	9e-93
TAIR|locus:2126071	473	ROPGEF3 "ROP (rho of plants) g	0.736	0.687	0.533	2.5e-88
TAIR|locus:2198220	485	ROPGEF2 "ROP (rho of plants) g	0.764	0.694	0.509	5.6e-84
TAIR|locus:2050699	463	ROPGEF4 "ROP (rho of plants) g	0.761	0.725	0.476	3.8e-78
TAIR|locus:2119320	517	ROPGEF9 "ROP (rho of plants) g	0.603	0.514	0.535	6.7e-72
TAIR|locus:2017844	515	ROPGEF12 "ROP (rho of plants)	0.585	0.500	0.534	2.9e-71
TAIR|locus:2018169	607	ROPGEF11 "ROP (rho of plants)	0.578	0.420	0.551	3.7e-71

TAIR|locus:2121828 ROPGEF1 "ROP (rho of plants) guanine nucleotide exchange factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 288/417 (69%), Positives = 316/417 (75%)

Query:    16 ERCGXXXXXXXXXXXXXXXXXXXXGRRFDAEGASSSMTSSPRPVA-RXXXXXXXXXXXXX 74
             ERCG                      RFD EGASSS+ SSPR VA R             
Sbjct:    15 ERCGSYSPSADISESESSSSFSC--HRFDGEGASSSIPSSPRVVAGRGFYFPAPVMLPVI 72

Query:    75 XXKDVVVWDEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSA 134
               KDVV WD+K  + D DLSE+EMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSA
Sbjct:    73 GGKDVV-WDDK--QPDNDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSA 129

Query:   135 TVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSD 194
             TVFGELWRLEPLAPQKKAMWRRE++WLLCVSDSIVEL+PSIQQFPGGGTYE+M TRPRSD
Sbjct:   130 TVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSD 189

Query:   195 LYMNLPALKKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEE 254
             LY NLPALKKLDAMLI MLD F +TEFWY              +++S  P+   SVR E+
Sbjct:   190 LYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDCDKD-SYNS--PA---SVRQED 243

Query:   255 KWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKN 314
             KWWLPCPKVP NGLSE+ RKKLQQCRD  NQILKAA+AINS VLAEMEIP  YLETLPK+
Sbjct:   244 KWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKS 303

Query:   315 GKACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXX 374
             GK CLG+IIY+Y+TA++FSPECLLDCLDLSSEH TLE+ANRIEAAVHVW+QK+       
Sbjct:   304 GKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQ 363

Query:   375 XXXXXXXWGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
                    WGGKVKGLV D+E+N  L  RAETLL SLR+RFPGLPQT LDMNKIQYNK
Sbjct:   364 AKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNK 420

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2185153 ROPGEF7 "ROP (rho of plants) guanine nucleotide exchange factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 213/349 (61%), Positives = 262/349 (75%)

Query:    83 DEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWR 142
             ++K  +SD+ +SEVEMMKERF+KLLLGEDMSG G GVCTALAISNAITNL AT+FG+LWR
Sbjct:    58 EKKKIRSDSRVSEVEMMKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCATLFGQLWR 117

Query:   143 LEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPAL 202
             LEPL  +KK MWRREM+WLLCVSD IVE+ P+ Q FP G   E+M  RPRSDLY+NLPAL
Sbjct:   118 LEPLPTEKKEMWRREMEWLLCVSDHIVEMTPTWQTFPDGTKLEIMTCRPRSDLYVNLPAL 177

Query:   203 KKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPK 262
             +KLD ML+ +LD F ETEFWY              + SS   S +   R E+KWWLP P+
Sbjct:   178 RKLDNMLLEILDSFEETEFWYVDQGIMAHESAADGS-SSFRKSFQ---RQEDKWWLPVPR 233

Query:   263 VPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDI 322
             V   GL E+ RK+LQ  RDCTNQILKAAMAINS  LA+MEIP +YLE+LP+ G++CLGD+
Sbjct:   234 VSPGGLQENSRKQLQHKRDCTNQILKAAMAINSITLADMEIPESYLESLPRKGRSCLGDL 293

Query:   323 IYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXW 382
             IYRYI++DQFSPECLLDCLDLSSEH  +E+ANR+E+++++W ++               W
Sbjct:   294 IYRYISSDQFSPECLLDCLDLSSEHQAIEIANRVESSIYLWHKRTNSKPATNTKTS---W 350

Query:   383 GGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
                VK L+ D++K   +A RAE+LL SL+ RFPGLPQTALDM+KIQYNK
Sbjct:   351 E-MVKELMVDADKLELMADRAESLLLSLKQRFPGLPQTALDMSKIQYNK 398

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2153684 ROPGEF5 "ROP (rho of plants) guanine nucleotide exchange factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 198/360 (55%), Positives = 254/360 (70%)

Query:    77 KDVVVWDEKPEKS-DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSAT 135
             K + + D+   K+ + + ++VEMMKERFAKLLLGEDMSG GKGVCTALAISNAITNL AT
Sbjct:    83 KKLTLHDDSGFKAKEMNSADVEMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCAT 142

Query:   136 VFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDL 195
             +FG+LWRLEPL+ +KK MWRREM+W+L VSD IVEL PS Q +P G  +EVM  RPR DL
Sbjct:   143 IFGQLWRLEPLSSEKKEMWRREMEWILSVSDHIVELTPSTQTYPDGNKFEVMTCRPRFDL 202

Query:   196 YMNLPALKKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEK 255
             ++NLPAL+KLD ML+ +L  F +TEFWY              +F   +       R EEK
Sbjct:   203 FINLPALRKLDNMLLDILASFKKTEFWYVDQGIVASENDGSASFRRKIQ------RQEEK 256

Query:   256 WWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNG 315
             WWLP P++  NGL+E+ R +L   R+C  QILKAAMAINS  L EM++P +YLETLPKNG
Sbjct:   257 WWLPVPRLAPNGLTEEARTELNHKRECATQILKAAMAINSLALTEMDVPKSYLETLPKNG 316

Query:   316 KACLGDIIYRYITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXX 375
             ++CLGD+IYRY+T+D+FS E LLDCLDLSSEH  L++ANR+EA+++VW+++ Q       
Sbjct:   317 RSCLGDVIYRYVTSDKFSAESLLDCLDLSSEHIALDIANRVEASIYVWRRRVQTKLGVNN 376

Query:   376 XXXXXX----WGGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
                       W   VK L+A  +K   L  R+ETLL  L+ RFP L QT+LD++KIQ+NK
Sbjct:   377 NTSSTTPKLTWE-MVKELMAAGDKRGLLVERSETLLRCLKQRFPSLTQTSLDISKIQWNK 435

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2078976 ROPGEF6 "ROP (rho of plants) guanine nucleotide exchange factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 189/345 (54%), Positives = 234/345 (67%)

Query:    91 TDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQK 150
             T+ SE+E++KER AKLLLGEDMSG G+GVC ALAISNAITNL A + G+ WRLEP+  +K
Sbjct:   103 TETSEIELLKERMAKLLLGEDMSGSGEGVCPALAISNAITNLYAAILGQQWRLEPIPSEK 162

Query:   151 KAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLI 210
             K MWRRE++ LL VSD IVELVPS Q FP G   EVM  RPRSDL+  LPAL+KLD MLI
Sbjct:   163 KLMWRREIEVLLSVSDHIVELVPSFQNFPNGNKIEVMNCRPRSDLFTCLPALRKLDNMLI 222

Query:   211 GMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSE 270
              +LD F ETEFWY              +F      G       +KWWLP P+VP +GL+E
Sbjct:   223 EILDSFGETEFWYVDQGIVAAESARSNSFRE---DG-------DKWWLPLPRVPSDGLTE 272

Query:   271 DVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD 330
               RKKL   R+ TNQILKA M+INS  LAEME+P +YLE LPKNG++CLGD +YR IT+D
Sbjct:   273 QTRKKLDHTREFTNQILKACMSINSIALAEMEVPQSYLEALPKNGRSCLGDFLYRNITSD 332

Query:   331 QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXX-WGGKVKGL 389
              FS + LL+ +DLSSE   +E+ANR+EA+++VW+++                WG  VK +
Sbjct:   333 NFSADHLLESIDLSSELAVVEMANRVEASMYVWRRRAHSRHLISLYRSTSTRWGMIVKEM 392

Query:   390 V---ADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
             +    D +K    A RAE+LL  L+ RFPGL QTALD +KIQYNK
Sbjct:   393 MMHQTDGDKREIFAERAESLLIRLKQRFPGLRQTALDTSKIQYNK 437

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126071 ROPGEF3 "ROP (rho of plants) guanine nucleotide exchange factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 183/343 (53%), Positives = 235/343 (68%)

Query:    95 EVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 154
             E+E MKERFAKLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  RLEPL  +K+A+W
Sbjct:   104 ELETMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALW 163

Query:   155 RREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLD 214
             +REM  LL V D IVE +P  Q    G T EVM +RPR+D+Y+NLPAL+KLD+ML+  LD
Sbjct:   164 KREMNCLLSVCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALD 223

Query:   215 GFCETEFWYXXXXXXX--XXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDV 272
              F  TEFWY                +F  ++       R EEKWWLP P VP  GLS+  
Sbjct:   224 SFQNTEFWYAEEGSLSMKSARSSTGSFRKVIVQ-----RKEEKWWLPVPLVPSEGLSDKA 278

Query:   273 RKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITAD-Q 331
             RK+L+  R+ TNQI KAAMAINSS+L+EMEIP +Y+ TLPK GK+ +GD IYRY++   +
Sbjct:   279 RKQLKNKRESTNQIHKAAMAINSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGR 338

Query:   332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGKVKGLVA 391
             F PE LLDCL++SSEH  +++A+R+EA+++ W++K               W   VK L++
Sbjct:   339 FFPEQLLDCLNISSEHEAVQLADRVEASMYTWRRKS------CLSNSKNSWN-MVKDLMS 391

Query:   392 DSE---KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
              +E   KN+ +A RAETLL  L+ R+P L QT+LD+ KIQYNK
Sbjct:   392 TTERTDKNYVMAERAETLLFCLKQRYPELSQTSLDICKIQYNK 434

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2198220 ROPGEF2 "ROP (rho of plants) guanine nucleotide exchange factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 181/355 (50%), Positives = 232/355 (65%)

Query:    83 DEKPEKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWR 142
             DE     +    E+E MKERF+KLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  R
Sbjct:   104 DEHLAVQEISEPELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLR 163

Query:   143 LEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPAL 202
             LEPL  ++K  W+REM  LL V D I E +P  Q    G T EVM +RPR+D+Y+NLPAL
Sbjct:   164 LEPLEIEQKTTWKREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPAL 223

Query:   203 KKLDAMLIGMLDGFCETEFWYXXXXXXX--XXXXXXXAFSSMVPSGRPSVRHEEKWWLPC 260
             +KLD+ML+  LD F +TEFWY                +F  ++       R EEKWWLP 
Sbjct:   224 RKLDSMLMEALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQ-----RKEEKWWLPI 278

Query:   261 PKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLG 320
             P VP  GLSE  RK+L+  R+ TNQI KAAMAINSS+L EM+IP +Y+ TLPK+GKA  G
Sbjct:   279 PLVPLQGLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTG 338

Query:   321 DIIYRYITAD-QFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXX 379
             D IYR++T+  +FSPE LLD L + SEH  L++A+R+EA+++ W++K             
Sbjct:   339 DAIYRHMTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK------ACLNNSK 392

Query:   380 XXWGGKVKGLVA---DSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
               W   VK L++    S+KN+ LA RAE+LL  L+ R+P L QT+LD+ KI  NK
Sbjct:   393 SSWN-MVKDLMSITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNK 446

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2050699 ROPGEF4 "ROP (rho of plants) guanine nucleotide exchange factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 171/359 (47%), Positives = 231/359 (64%)

Query:    83 DEKPEKSDTDLSE---VEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGE 139
             D   E SD D +E   +EMM+ERFAKLLLGEDMSG GKGVCTA+ +SN+ITNL ATVFG+
Sbjct:    78 DGDEEDSDIDSAEDAELEMMRERFAKLLLGEDMSGSGKGVCTAVTVSNSITNLYATVFGQ 137

Query:   140 LWRLEPLAPQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNL 199
               RL+PL+ +KK +W+REM   + + D IVE++P       G   E+  T+ RSD+ M+L
Sbjct:   138 SLRLQPLSTEKKDLWKREMNCFMSICDYIVEVIPRSL----GTNVEITETKLRSDILMSL 193

Query:   200 PALKKLDAMLIGMLDGFCETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSV--RHEEKWW 257
             PAL+KLD ML+ +LD F E EFWY                S      R  V  R +EKWW
Sbjct:   194 PALRKLDNMLMEILDSFTENEFWYVERGSSSMNSGGGGRDSGTF---RKVVVQRKDEKWW 250

Query:   258 LPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKA 317
             LP P VP  GLSE+ RK L+  RDC +QI KAA+AIN S L +M+IP +YL TLPK+GKA
Sbjct:   251 LPVPCVPAEGLSEEERKHLRHKRDCASQIHKAALAINDSTLNDMDIPDSYLTTLPKSGKA 310

Query:   318 CLGDIIYRYI-TADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXX 376
              +GD+IY+ + TA++F P+ LLD L ++SEH  LE+A+++EA++  W++K          
Sbjct:   311 SVGDVIYKQLCTAEKFYPDQLLDILKITSEHEALELADKVEASLVTWRRK-----TGGLT 365

Query:   377 XXXXXWGGKVKGLVADSE----KNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
                  W   +K +  D++    KNH LA RA +LL  L+ R+P L QT+LD+ KIQ+N+
Sbjct:   366 HSKSSWD-MMKDISGDADRGNDKNHILAARARSLLFCLKQRYPELSQTSLDICKIQFNR 423

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

TAIR|locus:2119320 ROPGEF9 "ROP (rho of plants) guanine nucleotide exchange factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 150/280 (53%), Positives = 191/280 (68%)

Query:    88 KSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLA 147
             + D   SE EMMK+RF KLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+A
Sbjct:    67 RQDKQQSETEMMKDRFTKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMA 126

Query:   148 PQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDA 207
             P ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLDA
Sbjct:   127 PDRRARWKKEIDWLLSVTDHIVEFVPSQQISKEGVCTEIMVTRQRGDLLMNIPALRKLDA 186

Query:   208 MLIGMLDGFC-ETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQN 266
             MLI  LD F    EFWY                S      R + R ++KWWLP  KVP N
Sbjct:   187 MLIDTLDNFRGHNEFWYVSRD------------SEEGKQAR-NERTKDKWWLPPVKVPPN 233

Query:   267 GLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRY 326
             GLSE  R+ L   +D  +Q+ KAAMAIN+ VL+EM IP +Y+E+LPKNG+  LGD +Y+ 
Sbjct:   234 GLSESARRMLHFQKDSVSQVQKAAMAINAQVLSEMAIPDSYIESLPKNGRVSLGDSLYKS 293

Query:   327 ITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQK 366
             IT + F PE  L  LDLS+EH  L+V NRIEA++ +WK+K
Sbjct:   294 ITEEWFDPEQFLSTLDLSTEHKVLDVKNRIEASIVIWKRK 333

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2017844 ROPGEF12 "ROP (rho of plants) guanine nucleotide exchange factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 147/275 (53%), Positives = 197/275 (71%)

Query:    93 LSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKA 152
             L+++E MKERF+KLLLGED SGGGKGV +ALA+SNAITNL+A+VFGE  RLEP+  +++A
Sbjct:    90 LADMEQMKERFSKLLLGEDNSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMPAERRA 149

Query:   153 MWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGM 212
              WR+E+ WLL V+D +VE  PS Q+   G   E+M TR R+DL+MN+PALKKLDAMLI  
Sbjct:   150 RWRKEIDWLLSVTDYVVEFAPSQQKNKDGTNMEIMTTRQRTDLHMNIPALKKLDAMLIDC 209

Query:   213 LDGFCE-TEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSED 271
             L+ F + +EF Y                 S    G+   R++EKWW+P  KVP +GLSE 
Sbjct:   210 LENFKDQSEFSYISK-------------DSPDLDGK---RNDEKWWIPTVKVPPDGLSEA 253

Query:   272 VRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQ 331
              R+ LQ  +DC NQ+LKAAMAIN+ VL EMEIP +Y+++LPKNG+A LGD +Y+ IT D 
Sbjct:   254 SRRFLQYQKDCVNQVLKAAMAINAQVLFEMEIPESYIDSLPKNGRASLGDQMYKNITVDF 313

Query:   332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQK 366
             F P+  L  +D+SSEH  +++ NRIEA++ +WK+K
Sbjct:   314 FDPDQFLSSMDMSSEHKIVDLKNRIEASIIIWKRK 348

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0090406 "pollen tube" evidence=IDA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2018169 ROPGEF11 "ROP (rho of plants) guanine nucleotide exchange factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 150/272 (55%), Positives = 192/272 (70%)

Query:    96 VEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWR 155
             +E MKE+F+KLLLGEDMSGGGKGV +ALA+SNAITNL+A+ FGE  RLEP+A  +K  WR
Sbjct:   169 MEQMKEKFSKLLLGEDMSGGGKGVSSALALSNAITNLAASAFGEQRRLEPMAVDRKTRWR 228

Query:   156 REMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDG 215
             RE+ WL+ V+D IVE  P+ Q    G + EVM+TR R+DL  N+PALKKLDAML+  LD 
Sbjct:   229 REIGWLISVADYIVEFAPTQQTNKDGTSMEVMSTRQRTDLLCNIPALKKLDAMLLDCLDK 288

Query:   216 FCET-EFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRK 274
             F +  EF+Y                    P    + R++EKWWLP  KVP NGLSE  R+
Sbjct:   289 FKDQDEFYYVKKDS---------------PDSCET-RNDEKWWLPAVKVPPNGLSEISRR 332

Query:   275 KLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSP 334
              LQ  ++C NQ+LKAAMAIN+ VL+EMEIP +YLE+LPKNG+A LGD+IYR IT + F  
Sbjct:   333 FLQSQKECVNQVLKAAMAINAQVLSEMEIPESYLESLPKNGRASLGDVIYRMITVEMFDA 392

Query:   335 ECLLDCLDLSSEHHTLEVANRIEAAVHVWKQK 366
             +  L  +DLSSEH  L++ NRIEA++ +WK+K
Sbjct:   393 DQFLIEMDLSSEHKILDLKNRIEASIVIWKRK 424

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0080147 "root hair cell development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZY2	ROGF1_ARATH	No assigned EC number	0.7731	0.9501	0.7645	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036251001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (587 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
pfam03759	360	pfam03759, PRONE, PRONE (Plant-specific Rop nucleo	0.0

>gnl|CDD|217715 pfam03759, PRONE, PRONE (Plant-specific Rop nucleotide exchanger)

 Score =  594 bits (1534), Expect = 0.0
 Identities = 235/340 (69%), Positives = 268/340 (78%), Gaps = 19/340 (5%)

Query: 92  DLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKK 151
             SE+E+MKERFAKLLLGEDMSGGGKGV TALA+SNAITNL+ATVFGELWRLEPLAP+KK
Sbjct: 1   LPSEMELMKERFAKLLLGEDMSGGGKGVSTALALSNAITNLAATVFGELWRLEPLAPEKK 60

Query: 152 AMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIG 211
           AMWRREM WLL V+D IVE VPS Q  P G T EVM TRPRSDLYMNLPAL+KLDAML+ 
Sbjct: 61  AMWRREMDWLLSVTDYIVEFVPSKQTLPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLLE 120

Query: 212 MLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSED 271
           +LD F +TEFWYVD+G +                 R S R EEKWWLP PKVP  GLSE 
Sbjct: 121 ILDSFKDTEFWYVDQGSL-------------SSFRRKSQRQEEKWWLPVPKVPPGGLSES 167

Query: 272 VRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQ 331
            RKKLQ  RDC NQILKAAMAINS VLAEMEIP +Y+E+LPKNG+A LGD IYRYIT+DQ
Sbjct: 168 SRKKLQHKRDCVNQILKAAMAINSQVLAEMEIPESYIESLPKNGRASLGDAIYRYITSDQ 227

Query: 332 FSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVA 391
           FSP+ LLDCLDLSSEH  LE+ANRIEA++++W++K      +H+K  +SSWG  VK L+A
Sbjct: 228 FSPDQLLDCLDLSSEHKALELANRIEASMYIWRRK------AHTKDSKSSWGSAVKDLMA 281

Query: 392 DSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
           D EK   LA RAETLL  L+ RFPGLPQT+LD++KIQYNK
Sbjct: 282 DGEKRELLAERAETLLLCLKQRFPGLPQTSLDISKIQYNK 321

This is a functional guanine exchange factor (GEF) of plant Rho GTPase. Length = 360

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
PF03759	365	PRONE: PRONE (Plant-specific Rop nucleotide exchan	100.0

>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli

Probab=100.00  E-value=2.8e-187  Score=1360.84  Aligned_cols=332  Identities=73%  Similarity=1.139  Sum_probs=259.3

Q ss_pred             hhHHHHHHHHHHHhhhccCCCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcceeeeccceeEEee
Q 013555           93 LSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIVELV  172 (441)
Q Consensus        93 ~se~E~MKErFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSvsD~IVElv  172 (441)
                      .+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||||
T Consensus         2 ~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AtvFGe~~rLEPl~~ekk~~WrrEm~wLLsv~d~iVE~v   81 (365)
T PF03759_consen    2 PSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLAATVFGELWRLEPLSPEKKAMWRREMDWLLSVTDYIVELV   81 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTTBTTSSS-S--HHHHHHHHHHHHHHHHHTT--SSS---HHHHHHHHHHHHHHHGGGGG-EEEE
T ss_pred             chHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHhcceeecchhhhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceecCCCceEEeeccccccccccCchhHHHHHHHHHHHhhccCCCeeEeEeCCcccCCCCCCCCCCCCCCCCCCcccc
Q 013555          173 PSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRH  252 (441)
Q Consensus       173 Ps~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~dtEFWYv~~g~~~~~~~~~~~~~~s~s~r~~~~R~  252 (441)
                      |++|++|||+++|||+||||+|||||||||||||+||||+||||+|||||||++|+++ +.+      .+++||+..+||
T Consensus        82 Ps~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLie~LDsf~dtEFwYv~~g~~~-~~~------~~~~~~~~~~r~  154 (365)
T PF03759_consen   82 PSKQTFPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLIEILDSFKDTEFWYVDQGIVA-DSD------SSSSFRRSSQRQ  154 (365)
T ss_dssp             EEEEE-TTS-EEEEEEEEE-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TT-------------SHHHHT------
T ss_pred             cceeecCCCceEEEEecCccchhhcCcHHHHHHHHHHHHHHHhCCCCeeEEecCCccc-ccc------cCccccCccccc
Confidence            9999999999999999999999999999999999999999999999999999999998 332      267899999999


Q ss_pred             CccccccCCCCCCCCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhhcCCC
Q 013555          253 EEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQF  332 (441)
Q Consensus       253 eeKWWLP~P~VP~~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~F  332 (441)
                      ++|||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+|
T Consensus       155 ~~KWWLP~p~VP~~GLse~~rK~L~~~rd~~~QilKAAmaIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~~~F  234 (365)
T PF03759_consen  155 EEKWWLPVPRVPPNGLSEESRKWLQHQRDCVNQILKAAMAINSQVLAEMEIPESYLESLPKNGRASLGDSIYRYITSEQF  234 (365)
T ss_dssp             CCCTTS--EE--TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHCS-SSHHHHHHHHHHHHCTSSS-
T ss_pred             CCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccccHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHhhhcCCCchhhHHHHhhhhHHHHHHHHHhhhccccCCCCCCcCCccccccccccchhhHHHHHHHHHHHHHHHHh
Q 013555          333 SPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLHSLRL  412 (441)
Q Consensus       333 spe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~kssWg~~Vkd~~~d~dK~e~laeRAEtlL~~LKq  412 (441)
                      ||||||+||||||||+|||+||||||||||||||+++++      +|+|||++|||++++.|||++|++|||+||+||||
T Consensus       235 spe~ll~~ldlssEH~~le~~NRvEAai~vWrrK~~~k~------~ksSWg~~vkdl~~~~dK~e~l~eRAEtlL~~LK~  308 (365)
T PF03759_consen  235 SPEQLLDCLDLSSEHKALELANRVEAAIYVWRRKICEKD------SKSSWGSMVKDLMSDGDKRELLAERAETLLLCLKQ  308 (365)
T ss_dssp             -HHHHHHTS--SSHHHHHHHHHHHHHHHHHHCH---------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhcCCC------CccchhhhcccccccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997      89999999999999999999999999999999999


Q ss_pred             hCCCCCcchhhhhhhhccccccchh
Q 013555          413 RFPGLPQTALDMNKIQYNKGSQYLR  437 (441)
Q Consensus       413 RfPgLpQT~LD~sKIQyNkDVG~A~  437 (441)
                      ||||||||+||++|||||||||||.
T Consensus       309 RfPgl~QT~LD~~KIQyNkDVG~aI  333 (365)
T PF03759_consen  309 RFPGLPQTSLDISKIQYNKDVGQAI  333 (365)
T ss_dssp             HSTT----HHHHHHHHH---HHHHH
T ss_pred             hCCCCCchHHHHHHHHccchhHHHH
Confidence            9999999999999999999999985

Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	441
2nty_A	365	Rop4-Gdp-Prone8 Length = 365		6e-89
2ntx_A	365	Prone8 Length = 365		2e-76

>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8 Length = 365

Iteration: 1
 Score =  324 bits (831), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 169/346 (48%), Positives = 221/346 (63%), Gaps = 25/346 (7%)
Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+
Sbjct: 2   KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 61
Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLD
Sbjct: 62  PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 121
Query: 207 AMLIGMLDGF-CETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           AMLI  LD F    EFWY                           R  +KWWLP  KVP 
Sbjct: 122 AMLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 168
Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 169 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 228
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGK 385
            IT + F PE  L  LD+S+EH  L++ NRIEA+V +WK+K               WG  
Sbjct: 229 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 282
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NK
Sbjct: 283 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNK 323

>pdb|2NTX|A Chain A, Prone8 Length = 365

Iteration: 1
 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/346 (46%), Positives = 210/346 (60%), Gaps = 25/346 (7%)
Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   ++ E  K+RFAKLLLGED SGGGKGV +ALA+SNAITNL+A++FGE  +L+P 
Sbjct: 2   KRSERQQADXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPX 61
Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+  TR R DL  N+PAL+KLD
Sbjct: 62  PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLD 121
Query: 207 AMLIGMLDGF-CETEFWYXXXXXXXXXXXXXXAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           A LI  LD F    EFWY                           R  +KWWLP  KVP 
Sbjct: 122 AXLIDTLDNFRGHNEFWYVSRDSEEGQQARND-------------RTNDKWWLPPVKVPP 168
Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAA AIN+ VL+E EIP +Y+++LPKNG+A LGD IY+
Sbjct: 169 GGLSEPSRRXLYFQKDSVTQVQKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYK 228
Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQXXXXXXXXXXXXXWGGK 385
            IT + F PE  L  LD S+EH  L++ NRIEA+V +WK+K               WG  
Sbjct: 229 SITEEWFDPEQFLAXLDXSTEHKVLDLKNRIEASVVIWKRK------LHTKDTKSSWGSA 282
Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NK
Sbjct: 283 VS-----LEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNK 323

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	1e-180
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A Length = 365

 Score =  507 bits (1306), Expect = e-180
 Identities = 175/346 (50%), Positives = 229/346 (66%), Gaps = 25/346 (7%)

Query: 87  EKSDTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPL 146
           ++S+   +++EMMK+RFAKLLLGEDMSGGGKGV +ALA+SNAITNL+A++FGE  +L+P+
Sbjct: 2   KRSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPM 61

Query: 147 APQKKAMWRREMQWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLD 206
              ++A W++E+ WLL V+D IVE VPS Q    G   E+M TR R DL MN+PAL+KLD
Sbjct: 62  PQDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLD 121

Query: 207 AMLIGMLDGF-CETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
           AMLI  LD F    EFWYV R    G                 + R  +KWWLP  KVP 
Sbjct: 122 AMLIDTLDNFRGHNEFWYVSRDSEEGQQAR-------------NDRTNDKWWLPPVKVPP 168

Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYR 325
            GLSE  R+ L   +D   Q+ KAAMAIN+ VL+EMEIP +Y+++LPKNG+A LGD IY+
Sbjct: 169 GGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYK 228

Query: 326 YITADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGK 385
            IT + F PE  L  LD+S+EH  L++ NRIEA+V +WK+K   K        +SSWG  
Sbjct: 229 SITEEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKD------TKSSWGSA 282

Query: 386 VKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNK 431
           V       EK      RAET+L  L+ +FPGLPQ++LD++KIQ+NK
Sbjct: 283 V-----SLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNK 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 52/356 (14%), Positives = 108/356 (30%), Gaps = 86/356 (24%)

Query: 112 MSGGGKGVCTALAISNA--ITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIV 169
           + G GK         +      +   +F   W L  L          EM   L       
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIF---W-LN-LKNCNSPETVLEMLQKLL-----Y 207

Query: 170 ELVPSIQQFPGGGT---YEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCETEFW-YVD 225
           ++ P+        +     + + +      +     +    +L+  L      + W   +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLV--LLNVQNAKAWNAFN 263

Query: 226 RG--IVV--GDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQNGLSEDVRKKLQ-QCR 280
               I++        D  S+   +   S+ H               L+ D  K L  +  
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTT-HISLDHHSM-----------TLTPDEVKSLLLKYL 311

Query: 281 DCTNQIL-KAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYITADQFSP--ECL 337
           DC  Q L +  +  N   L+   I A  +    ++G A   +  ++++  D+ +   E  
Sbjct: 312 DCRPQDLPREVLTTNPRRLS---IIAESI----RDGLATWDN--WKHVNCDKLTTIIESS 362

Query: 338 LDCLDLSSEH----HTLEV----ANRIEAAV--HVWKQKDQRK-----HLSHSKSRRSSW 382
           L+ L+  +E+      L V    A+ I   +   +W    +       +  H  S     
Sbjct: 363 LNVLE-PAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYS----- 415

Query: 383 GGKVKGLVADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKI---QYNKGSQY 435
                 LV    K  +++      + S+ L      +    +++     YN    +
Sbjct: 416 ------LVEKQPKESTIS------IPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 60/494 (12%), Positives = 130/494 (26%), Gaps = 175/494 (35%)

Query: 1   MGSVSSDDDVSDQQSERC----GSYSLSADVSESESCSSSSFSG--RRFDAEGASSSMTS 54
           + + +S + V +   +       +++  +D S +      S     RR         + S
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------LKS 240

Query: 55  SPRP-------------VARGFGFPVPVMVPVIGGKDVVVWDEKPEKSDTDLSEVEM--- 98
            P                   F     +++     +   V D     + T +S       
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297

Query: 99  -----MKERFAKLL------LGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLA 147
                +K    K L      L  ++            +S         +  E  R     
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLS---------IIAESIRDGLAT 343

Query: 148 PQKKAMWRREMQWLL--CVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKL 205
                 W+      L   +  S+  L P+  +      ++ ++  P S    ++P     
Sbjct: 344 WDN---WKHVNCDKLTTIIESSLNVLEPAEYR----KMFDRLSVFPPS---AHIP----- 388

Query: 206 DAMLIGMLDGFCETEFWYVDRGIVVGDGGDRDAFSSMVPSGRPSVRHEEKWWLPCPKVPQ 265
             +L+ ++                                          W+        
Sbjct: 389 -TILLSLI------------------------------------------WFDVIKSDVM 405

Query: 266 NGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPK-NGKACLGD-II 323
             +++  +  L + +   + I                IP+ YLE   K   +  L   I+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI---------------SIPSIYLELKVKLENEYALHRSIV 450

Query: 324 YRYITADQFSPE-CLLDCLD------LSSEHH--TLEVANRIEAAVHV-----W-KQKDQ 368
             Y     F  +  +   LD      +   HH   +E   R+     V     + +QK  
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQK-- 506

Query: 369 RKHLSHSKSRRSSWGGKVKGLVADSEK-------NHSLAHRAETLL---------HSLRL 412
              + H  +  ++ G  +   +   +        N     R    +         + +  
Sbjct: 507 ---IRHDSTAWNASGS-ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 413 RFPGLPQTALDMNK 426
           ++  L + AL M +
Sbjct: 563 KYTDLLRIAL-MAE 575

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	100.0

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A

Probab=100.00  E-value=3.1e-182  Score=1321.29  Aligned_cols=324  Identities=53%  Similarity=0.884  Sum_probs=275.9

Q ss_pred             CCChhHHHHHHHHHHHhhhccCCCCCCcchhhHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcceeeeccceeE
Q 013555           90 DTDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQWLLCVSDSIV  169 (441)
Q Consensus        90 ~~~~se~E~MKErFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSvsD~IV  169 (441)
                      +...+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+|||||||||||||||||
T Consensus         5 ~~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IV   84 (365)
T 2ntx_A            5 ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIV   84 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCE
T ss_pred             cCCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecceecCCCceEEeeccccccccccCchhHHHHHHHHHHHhhccCC-CeeEeEeCCcccCCCCCCCCCCCCCCCCCC
Q 013555          170 ELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLIGMLDGFCE-TEFWYVDRGIVVGDGGDRDAFSSMVPSGRP  248 (441)
Q Consensus       170 ElvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYv~~g~~~~~~~~~~~~~~s~s~r~~  248 (441)
                      |||||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+.  +           +.++.
T Consensus        85 E~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~--~-----------~~~~~  151 (365)
T 2ntx_A           85 EFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSE--E-----------GQQAR  151 (365)
T ss_dssp             EEEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC------------------------
T ss_pred             EeccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCC--c-----------cccCC
Confidence            9999999999999999999999999999999999999999999999999 99999999941  1           12457


Q ss_pred             ccccCccccccCCCCCCCCCCHHHHHHhhhhhhhHHHHHHHHHHhhhhhhccCCCcHHHHhhcccCCccchhHHHHHHhh
Q 013555          249 SVRHEEKWWLPCPKVPQNGLSEDVRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYLETLPKNGKACLGDIIYRYIT  328 (441)
Q Consensus       249 ~~R~eeKWWLP~P~VP~~GLSe~~RK~L~~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT  328 (441)
                      .+|||+|||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||
T Consensus       152 ~~r~eeKWWLP~p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it  231 (365)
T 2ntx_A          152 NDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSIT  231 (365)
T ss_dssp             ---------CCCEECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHT
T ss_pred             cccccccccCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHhhhcCCCchhhHHHHhhhhHHHHHHHHHhhhccccCCCCCCcCCccccccccccchhhHHHHHHHHHHHHH
Q 013555          329 ADQFSPECLLDCLDLSSEHHTLEVANRIEAAVHVWKQKDQRKHLSHSKSRRSSWGGKVKGLVADSEKNHSLAHRAETLLH  408 (441)
Q Consensus       329 ~d~Fspe~lL~~ldLssEH~aLe~aNRiEAai~vWrrK~~~k~~~~~~~~kssWg~~Vkd~~~d~dK~e~laeRAEtlL~  408 (441)
                      +|+|||||||+||||+|||+|||+||||||||||||||++.++      +|+|||..|     +.|||++|++|||+||+
T Consensus       232 ~d~Fspe~ll~~ldlssEH~~le~anRiEAsi~vWrrk~~~k~------~kssW~~~~-----~~dK~~~l~eRAEtlL~  300 (365)
T 2ntx_A          232 EEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKD------TKSSWGSAV-----SLEKRELFEERAETILV  300 (365)
T ss_dssp             CSSCCHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCCcccc-----chhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887      889997644     48999999999999999


Q ss_pred             HHHhhCCCCCcchhhhhhhhccccccchh
Q 013555          409 SLRLRFPGLPQTALDMNKIQYNKGSQYLR  437 (441)
Q Consensus       409 ~LKqRfPgLpQT~LD~sKIQyNkDVG~A~  437 (441)
                      ||||||||||||+||++|||||||||||.
T Consensus       301 ~LKqRfPglpQTsLD~sKIQyNkDVG~aI  329 (365)
T 2ntx_A          301 LLKQKFPGLPQSSLDISKIQFNKDVGQAV  329 (365)
T ss_dssp             HHHHHCTTCCCCHHHHHHHHHCCCHHHHH
T ss_pred             HHHHhCCCCCchHHHHHHHHccchHHHHH
Confidence            99999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00