Citrus Sinensis ID: 013561

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI
Secondary Structure (PSIPRED)
ccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHcccccccEEEEEcccccccccccHHHHHccccccccccHHHHHHHHHHcccccEEEEEEEEEEEEccccEEEEEEcccccccccccEEEEcccEEEEEccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHEEEEEEHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccEEEEccccEEEEccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccHHHHHccHHHccccccccccccHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHHcccEEEccccHHcccccccccccccccccEEEEEcccHHHHHHHHccccccccEEEEccccEEEEccccccccccEEEcccccHHHHHHHHHccccccEEEEEEEEEEEcccccEEEEEEEcccccccccEEEEEEccEEEEEEcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccHHHHcHHHHHHHHcccccccEEEEccEEEEEEHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEccccEEEEEccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MALARLARSGlrrsggaascysrqkdigieglptnkcfspslenvsrnsslsylpssirmtthmsswsrgikttphyqyhnaeRIVEESESeyqelsypgleatkpgekprVVVLGTgwgacrflkgidtkiydavcisprnhmvftpllastcvgtlefrsvaepvsriqtslssdpnsyfylascigidtdkHEVYCETvnngklshephqfKVAYDKLVIAagaepltfgikgvKENAYFLREVNHAQEIRKKLLLNLMlsenpgdtvQLFSKYFVITITLSFLVRLSQigvdewlrapsvedvfalgdcagfleqtgkpvlPALAQVAERQGKYLAELFNKkigeqdggkalsakdinlgdpfvykhlgsmatVGRYKALVDLRQskdekgisLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVfgrdisri
Flexible Loop (DISEMBL)
malarlarsglrrsggaascysrqkdigieglptNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSypgleatkpgeKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQtslssdpnsYFYLASCIGIDTDKHEVYCETVNngklshepHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWAttfvfgrdisri
Low Complexity Region (SEG)
MalarlarsglrrsggaasCYSRQKDIGIEGLPTNKCFSPSLENVsrnsslsylpssIRMTTHMSSWSRGIKTTPHYQYHNAeriveeseseyqelsYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI
Disordered region (IsUnstruct)
**********************************************************************IKTTPHYQYH******************************RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSL**DPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRD****
Disordered Region (DISOPRED)
************************************************SSLSYLPSSIRMTTH*****RGIKTTPHYQYHNAERIV**************************VVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG*************NLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI
Disordered Region (DISEMBL)
********************YSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERI************YPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI
Disordered Region (DISPRO)
****************AASC*******GIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESES*************KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
Q8GWA1	510	Alternative NAD(P)H dehyd	yes	no	0.494	0.427	0.591	3e-70
O80874	508	Alternative NAD(P)H dehyd	no	no	0.385	0.334	0.701	1e-69
Q55CD9	451	Probable NADH dehydrogena	yes	no	0.319	0.312	0.460	8e-32
Q94BV7	582	NAD(P)H dehydrogenase B2,	no	no	0.333	0.252	0.443	2e-28
F4JJJ3	580	NAD(P)H dehydrogenase B3,	no	no	0.356	0.270	0.431	6e-28
P32340	513	Rotenone-insensitive NADH	yes	no	0.344	0.296	0.398	2e-27
P40215	560	External NADH-ubiquinone	no	no	0.328	0.258	0.384	4e-26
Q1JPL4	571	NAD(P)H dehydrogenase B1,	no	no	0.541	0.418	0.324	4e-25
Q07500	545	External NADH-ubiquinone	no	no	0.326	0.264	0.407	8e-25
F2Z699	582	External alternative NADH	yes	no	0.333	0.252	0.406	1e-23

>sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 164/230 (71%), Gaps = 12/230 (5%)

Query: 39  SPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSY 98
           S S+ NV RN      P S  +++   +  +  + T   Q    E +V   E +     Y
Sbjct: 15  SSSVGNVFRN------PESYTLSSRFCTALQKQQVTDTVQAK--EDVVNALEPQ----RY 62

Query: 99  PGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTL 158
            GL  TK GEKPRV+VLG+GW  CR LKGIDT IYD VC+SPRNHMVFTPLLASTCVGTL
Sbjct: 63  DGLAPTKEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTL 122

Query: 159 EFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAY 218
           EFRSVAEP+SRIQ ++S +P SY++LA+C  +D D HEV+CETV  G  + +P +FK+AY
Sbjct: 123 EFRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAY 182

Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           DKLV+A GAE  TFGI GV ENA FLREV+HAQEIR+KLLLNLMLSE PG
Sbjct: 183 DKLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPG 232

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: -EC: .EC: -

>sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=1 SV=1

 Score =  264 bits (675), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 144/171 (84%)

Query: 98  YPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGT 157
           Y GL  T+ GEKPRVVVLG+GW  CR +KGIDT +YD VC+SPRNHMVFTPLLASTCVGT
Sbjct: 60  YSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGT 119

Query: 158 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVA 217
           LEFRSVAEP+SRIQ ++S +P S+F+LA+C  +D D HEV+CET+ +G  + +P +FK+A
Sbjct: 120 LEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIA 179

Query: 218 YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           YDKLVIA+GAE  TFGI GV ENA FLREV+HAQEIR+KLLLNLMLS+ PG
Sbjct: 180 YDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPG 230

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2

 Score =  138 bits (348), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 100/152 (65%), Gaps = 11/152 (7%)

Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           E  ++++LG GWG+  FLK +++  YD   ISPRNH +FTPLL S+ VGTLEFRS+AEPV
Sbjct: 38  ENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPV 97

Query: 168 SRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
                  + D N + Y+ AS   I+ + + V  ++       H    F++ YDKLVI  G
Sbjct: 98  -----RTTRDINEFKYIQASVTSINPENNSVLVKST-----FHNEKPFEMKYDKLVIGVG 147

Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
           +   TFGIKGV+ENA FL+E++HA+EIR+K++
Sbjct: 148 SRNNTFGIKGVEENANFLKELHHAREIRQKII 179

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           +K +VV+LGTGW    FLK ++   Y+   ISPRN+  FTPLL S   GT+E RSV EP+
Sbjct: 57  KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116

Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
             I      + ++ +  A C  ID    +VYC +   G  S+   +F V YD LVIA GA
Sbjct: 117 RNIG---RKNVDTSYLEAECFKIDPASKKVYCRS-KQGLSSNGKKEFSVDYDYLVIATGA 172

Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
           +  TF I GV+EN +FL+EV  AQ IRK ++
Sbjct: 173 QSNTFNIPGVEENCHFLKEVEDAQRIRKTVI 203

Calcium-dependent NAD(P)H dehydrogenase; more efficient on NADH. Binds calcium ions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 90/160 (56%), Gaps = 3/160 (1%)

Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
           K +VV+LGTGW    FLK ++   Y+   ISPRN+  FTPLL S   GT+E RSV EP+ 
Sbjct: 55  KRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGTVEARSVVEPIR 114

Query: 169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE 228
            I  +   +    F  A C  ID    +VYC +   G  S    +F V YD LVIA GA+
Sbjct: 115 NI--ARKQNVEMSFLEAECFKIDPGSKKVYCRS-KQGVNSKGKKEFDVDYDYLVIATGAQ 171

Query: 229 PLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
             TF I GV+EN +FL+EV  AQ IR  ++ +   +  PG
Sbjct: 172 SNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPG 211

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|P32340|NDI1_YEAST Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDI1 PE=1 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 11/163 (6%)

Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           +KP V++LG+GWGA  FLK IDTK Y+   ISPR++ +FTPLL S  VGT++ +S+ EP+
Sbjct: 52  DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 111

Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQ---FKVAY 218
             +  +L    N  +Y A    I+ D++ V  ++++     ++P      HQ    ++ Y
Sbjct: 112 --VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 169

Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
           D L+ A GAEP TFGI GV +  +FL+E+ ++ EIR+    NL
Sbjct: 170 DYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANL 212

Catalyzes the oxidation of NADH generated inside the Mitochondrion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 9

>sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%)

Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           ++  +V+LG+GWG+   LK +DT +Y+ V +SPRN+ +FTPLL ST VGT+E +S+ EPV
Sbjct: 111 KRKTLVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVEPV 170

Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
             I  +  S    ++Y A    +D +   +  ++       +  +   + YD LV+  GA
Sbjct: 171 RTI--ARRSHGEVHYYEAEAYDVDPENKTIKVKS----SAKNNDYDLDLKYDYLVVGVGA 224

Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
           +P TFG  GV E + FL+E++ AQEIR K++
Sbjct: 225 QPNTFGTPGVYEYSSFLKEISDAQEIRLKIM 255

External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE2, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1

 Score =  116 bits (290), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 130/262 (49%), Gaps = 23/262 (8%)

Query: 112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQ 171
           VVVLGTGW    FLK +D   YD   +SP+N+  FTPLL S   GT+E RS+ E V  I 
Sbjct: 52  VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVESVRNIT 111

Query: 172 TSLSSDPNSYFYLASCIGIDTDKHEVYCETV--NNGKLSHEPHQFKVAYDKLVIAAGAEP 229
              + +     + A C  ID    +V+C  V  ++ + S E   F + YD L++A GA+ 
Sbjct: 112 KKKNGEIE--LWEADCFKIDHVNQKVHCRPVFKDDPEASQE---FSLGYDYLIVAVGAQV 166

Query: 230 LTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK--YFVIT----IT 283
            TFG  GV EN +FL+EV  AQ IR+ ++     +  PG T +   +  +FVI       
Sbjct: 167 NTFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTG 226

Query: 284 LSFLVRLSQIGVDEWLRA-PSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAEL 342
           + F   L    +++  +  PSV+++  +      L Q+G  +L       ER   +  + 
Sbjct: 227 VEFAAELHDFIIEDITKIYPSVKELVKIT-----LIQSGDHILNTF---DERISSFAEQK 278

Query: 343 FNKK-IGEQDGGKALSAKDINL 363
           F +  I  Q G + +S  D ++
Sbjct: 279 FTRDGIDVQTGMRVMSVTDKDI 300

Calcium-dependent NAD(P)H dehydrogenase. Binds calcium ions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 8/152 (5%)

Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           +K  +V+LGTGWGA   LK +DT +Y+   +SPR+  +FTPLL ST VGT+E +S+ EPV
Sbjct: 96  KKKELVILGTGWGAISLLKKLDTSLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPV 155

Query: 168 SRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
             I       P    Y+ A  + +D    +V  ++V+      E     ++YD LV++ G
Sbjct: 156 RSIA---RRTPGEVHYIEAEALDVDPKAKKVMVQSVS----EDEYFVSSLSYDYLVVSVG 208

Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
           A+  TF I GV  NA FL+E+  AQ IR KL+
Sbjct: 209 AKTTTFNIPGVYGNANFLKEIEDAQNIRMKLM 240

External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE1, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|F2Z699|NDH2_YARLI External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 89/150 (59%), Gaps = 3/150 (2%)

Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
           K  +VVLG+GWG+  FLK +DT  Y+ + +SPRN+ +FTPLL S   GT+E RS+ EP+ 
Sbjct: 112 KKTLVVLGSGWGSVSFLKKLDTSNYNVIVVSPRNYFLFTPLLPSCPTGTIEHRSIMEPIR 171

Query: 169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE 228
            I     ++    +  A    ID +K  V   +  +   S E    ++ +D LV+  GA 
Sbjct: 172 GIIRHKQAE--CQYLEADATKIDHEKRIVTIRSAVSEN-SKEEVIKEIPFDYLVVGVGAM 228

Query: 229 PLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
             TFGI GV+ENA FL+E+  AQ+IR+ L+
Sbjct: 229 SSTFGIPGVQENACFLKEIPDAQQIRRTLM 258

Alternative NADH-ubiquinone oxidoreductase which catalyzes the oxidation of mitochondrial NADH does not translocate protons accross the inner mitochondrial membrane.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
255560820	546	Rotenone-insensitive NADH-ubiquinone oxi	0.605	0.489	0.746	1e-113
449433882	544	PREDICTED: alternative NAD(P)H dehydroge	0.596	0.483	0.721	1e-107
449479374	546	PREDICTED: alternative NAD(P)H dehydroge	0.596	0.481	0.721	1e-107
356521315	550	PREDICTED: probable NADH dehydrogenase-l	0.605	0.485	0.698	1e-104
359496334	546	PREDICTED: probable NADH dehydrogenase-l	0.603	0.487	0.716	1e-104
224116196	488	predicted protein [Populus trichocarpa]	0.473	0.428	0.805	2e-99
356527921	550	PREDICTED: probable NADH dehydrogenase-l	0.605	0.485	0.669	3e-99
385274831	553	type II NAD(P)H dehydrogenase [Symplocar	0.605	0.482	0.658	3e-92
357475817	542	External NADH-ubiquinone oxidoreductase	0.596	0.485	0.681	2e-91
385274833	553	type II NAD(P)H dehydrogenase [Symplocar	0.605	0.482	0.658	1e-90

>gi|255560820|ref|XP_002521423.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223539322|gb|EEF40913.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/268 (74%), Positives = 226/268 (84%), Gaps = 1/268 (0%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           MA AR+AR+GLRR+G     Y+  K     GL  +K  SPSL+N +   +LSYL SSI  
Sbjct: 1   MAFARIARTGLRRTGSTFRSYASDKGTLCGGLSVHKWSSPSLKNAAVGGNLSYL-SSINR 59

Query: 61  TTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWG 120
             + + WSRGI  TP+YQ+ NAERI +ESE+EY E  YPGLEATKPGEKPRVVVLGTGW 
Sbjct: 60  VNNENFWSRGISVTPNYQFPNAERIRDESENEYAEPRYPGLEATKPGEKPRVVVLGTGWA 119

Query: 121 ACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNS 180
           ACRF+KG+DTK YD VCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQ++L++ PNS
Sbjct: 120 ACRFMKGLDTKTYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQSALATGPNS 179

Query: 181 YFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKEN 240
           YFYLASC+G+DTDKHEVYCETV+NG L  EP++FKVAYDKLVIAAGAEPLTFGIKGVKE+
Sbjct: 180 YFYLASCMGVDTDKHEVYCETVSNGGLPQEPYRFKVAYDKLVIAAGAEPLTFGIKGVKEH 239

Query: 241 AYFLREVNHAQEIRKKLLLNLMLSENPG 268
           AYFLREVNHAQEIRKKLLLNLMLSENPG
Sbjct: 240 AYFLREVNHAQEIRKKLLLNLMLSENPG 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433882|ref|XP_004134725.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/269 (72%), Positives = 221/269 (82%), Gaps = 6/269 (2%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           M L+R+AR+GLRRSG A + +S QKD   +G  T + F+    N + N     LP  I  
Sbjct: 1   MVLSRIARNGLRRSGSAFNKHSHQKDSYSQGASTYRSFN----NTTTNGFFLNLPH-IER 55

Query: 61  TTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSY-PGLEATKPGEKPRVVVLGTGW 119
             H+S WSRGI  TP  Q+ +AER+VEES+ E  E S+ PGLEATKPGEKPRVVVLGTGW
Sbjct: 56  VNHVSFWSRGISITPQRQFPSAERLVEESDLESDEPSFGPGLEATKPGEKPRVVVLGTGW 115

Query: 120 GACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPN 179
            ACRFLKGIDTK+YD VCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQT+L+ DPN
Sbjct: 116 AACRFLKGIDTKVYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTALAKDPN 175

Query: 180 SYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE 239
           SYFYLASC G+DTDKHEV+CETVN G+L HE +QF+VAYDKLVIA G+EPLTFG+KGVKE
Sbjct: 176 SYFYLASCTGVDTDKHEVFCETVNYGELPHETYQFRVAYDKLVIAVGSEPLTFGVKGVKE 235

Query: 240 NAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           +A+FLREVNHAQEIRKKLLLNLMLSENPG
Sbjct: 236 HAFFLREVNHAQEIRKKLLLNLMLSENPG 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479374|ref|XP_004155582.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/269 (72%), Positives = 221/269 (82%), Gaps = 6/269 (2%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           M L+R+AR+GLRRSG A + +S QKD   +G  T + F+    N + N     LP  I  
Sbjct: 1   MVLSRIARNGLRRSGSAFNKHSHQKDSYSQGASTYRSFN----NTTTNGFFLNLPH-IER 55

Query: 61  TTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSY-PGLEATKPGEKPRVVVLGTGW 119
             H+S WSRGI  TP  Q+ +AER+VEES+ E  E S+ PGLEATKPGEKPRVVVLGTGW
Sbjct: 56  VNHVSFWSRGISITPQRQFPSAERLVEESDLESDEPSFGPGLEATKPGEKPRVVVLGTGW 115

Query: 120 GACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPN 179
            ACRFLKGIDTK+YD VCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQT+L+ DPN
Sbjct: 116 AACRFLKGIDTKVYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTALAKDPN 175

Query: 180 SYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE 239
           SYFYLASC G+DTDKHEV+CETVN G+L HE +QF+VAYDKLVIA G+EPLTFG+KGVKE
Sbjct: 176 SYFYLASCTGVDTDKHEVFCETVNYGELPHETYQFRVAYDKLVIAVGSEPLTFGVKGVKE 235

Query: 240 NAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           +A+FLREVNHAQEIRKKLLLNLMLSENPG
Sbjct: 236 HAFFLREVNHAQEIRKKLLLNLMLSENPG 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521315|ref|XP_003529302.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/272 (69%), Positives = 217/272 (79%), Gaps = 5/272 (1%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           MALAR+AR+ LRRSGGA   Y+ +KD    G  T++C  PS  N   +   SY P  I+ 
Sbjct: 1   MALARIARANLRRSGGAFGSYAHEKDTFNVGGYTSRCNIPSHANFESDGKFSYAPR-IKE 59

Query: 61  TTHMSSWSRGIKTTPHYQYHNA--ERIVEESESEYQE--LSYPGLEATKPGEKPRVVVLG 116
             +M+   RGI  TPH+Q+ +A  + ++EESE E++     Y GLEATKPGEKPRVVVLG
Sbjct: 60  QNYMNFSMRGISGTPHHQFPSASTQTVIEESEYEFENDRQRYAGLEATKPGEKPRVVVLG 119

Query: 117 TGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSS 176
           TGW ACRFLKGIDTKIYD VCISPRNHMVFTPLLASTCVGTLEFR+V EPVSRIQ +L+ 
Sbjct: 120 TGWAACRFLKGIDTKIYDVVCISPRNHMVFTPLLASTCVGTLEFRTVTEPVSRIQDALAR 179

Query: 177 DPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG 236
           DPNSYF+LASC GIDT KHE+YCE VNNG L  EP+QFKVAYDKLVIA G+EPLTFGIKG
Sbjct: 180 DPNSYFFLASCTGIDTGKHEIYCEAVNNGGLPQEPYQFKVAYDKLVIATGSEPLTFGIKG 239

Query: 237 VKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           VKENA+FLREVNHAQEIRK+LLLNLMLSENPG
Sbjct: 240 VKENAFFLREVNHAQEIRKRLLLNLMLSENPG 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496334|ref|XP_002262771.2| PREDICTED: probable NADH dehydrogenase-like [Vitis vinifera] gi|296080966|emb|CBI18598.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/268 (71%), Positives = 216/268 (80%), Gaps = 2/268 (0%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           MALAR ARSG  RS GA   YS  KD+  +   T K F PS EN++   +LS L SS+R 
Sbjct: 1   MALARAARSGFFRSRGAIPSYSCGKDVFFDAGHTQK-FLPSFENITSGGNLSQL-SSVRK 58

Query: 61  TTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWG 120
               S  SRGI+ TP YQ   AER+ EES+ E    SYPGLEATKPGEKPRVVVLGTGW 
Sbjct: 59  VDITSFGSRGIRATPQYQSPYAERVTEESDLENDSPSYPGLEATKPGEKPRVVVLGTGWA 118

Query: 121 ACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNS 180
           ACRFLKG+DTKIYD VCI+PRNHMVFTPLLASTCVGTLEFRSV EPV RIQ++L+++PNS
Sbjct: 119 ACRFLKGLDTKIYDVVCIAPRNHMVFTPLLASTCVGTLEFRSVTEPVGRIQSALATEPNS 178

Query: 181 YFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKEN 240
           YFYLASC  IDT+KHEVYCETV N  L HEP++F+VAYDKLVIA+GAEPLTFGIKGV E+
Sbjct: 179 YFYLASCTSIDTNKHEVYCETVGNVGLPHEPYRFRVAYDKLVIASGAEPLTFGIKGVNEH 238

Query: 241 AYFLREVNHAQEIRKKLLLNLMLSENPG 268
           A+FLREVNHAQEIRKKLLLNLMLSE+PG
Sbjct: 239 AFFLREVNHAQEIRKKLLLNLMLSESPG 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116196|ref|XP_002317236.1| predicted protein [Populus trichocarpa] gi|222860301|gb|EEE97848.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 170/211 (80%), Positives = 190/211 (90%)

Query: 58  IRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGT 117
            R   H++  SRGI+ TP YQ   AERIVEESESEY E  YPGLEATKPGEKPRVVVLGT
Sbjct: 1   FRKINHVNMQSRGIRVTPRYQSATAERIVEESESEYDEPRYPGLEATKPGEKPRVVVLGT 60

Query: 118 GWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSD 177
           GW ACRF+KG+DTKIYD VC+SPRNHMVFTPLLASTCVGTLEFRSV EPV+RIQ++L++ 
Sbjct: 61  GWAACRFMKGLDTKIYDIVCVSPRNHMVFTPLLASTCVGTLEFRSVVEPVNRIQSALATS 120

Query: 178 PNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV 237
           P+SYFY+ASC G+DTDKHEVYCET++NG L HEP+QFKVAYDKLVIAAG+EPLTFGIKGV
Sbjct: 121 PDSYFYMASCFGVDTDKHEVYCETISNGGLPHEPYQFKVAYDKLVIAAGSEPLTFGIKGV 180

Query: 238 KENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           KE+A+FLREVNHAQEIRKKLLLNLMLSENPG
Sbjct: 181 KEHAFFLREVNHAQEIRKKLLLNLMLSENPG 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527921|ref|XP_003532554.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max]

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 182/272 (66%), Positives = 215/272 (79%), Gaps = 5/272 (1%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           MALAR+AR+ LRRSGGA    + +KD+   G  T++   PS +    +   SY+P  I+ 
Sbjct: 1   MALARIARANLRRSGGALGSSAHEKDMFNVGGYTSRSNIPSHKFFESDRKFSYVPR-IKE 59

Query: 61  TTHMSSWSRGIKTTP--HYQYHNAERIVEESESEYQ--ELSYPGLEATKPGEKPRVVVLG 116
             +++   RGI  TP  H+   + + ++EESE E++     Y GL+ TKPGEKPRVVV+G
Sbjct: 60  QNYINFSMRGISGTPYDHFPSASTQTVIEESEYEFESDRQRYAGLQPTKPGEKPRVVVIG 119

Query: 117 TGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSS 176
           TGW ACRFLKGIDT+IYD VCISPRNHMVFTPLLASTCVGTLEFR+VAEPVSRIQ SL+ 
Sbjct: 120 TGWAACRFLKGIDTRIYDVVCISPRNHMVFTPLLASTCVGTLEFRTVAEPVSRIQDSLAR 179

Query: 177 DPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG 236
           DPNSYF+LASC GIDT KHE+YCE VNNG L  EP+QFKVAYDKLVIA+G+EPLTFGIKG
Sbjct: 180 DPNSYFFLASCTGIDTGKHEIYCEAVNNGGLPQEPYQFKVAYDKLVIASGSEPLTFGIKG 239

Query: 237 VKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           VKENA+FLREVNHAQEIRK+LLLNLMLSENPG
Sbjct: 240 VKENAFFLREVNHAQEIRKRLLLNLMLSENPG 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385274831|dbj|BAM13870.1| type II NAD(P)H dehydrogenase [Symplocarpus renifolius]

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 207/275 (75%), Gaps = 8/275 (2%)

Query: 1   MALARLARSGLRRSGGA-------ASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSY 53
           M  +R+ARS LR+S G        +S Y  Q     EGLP +  +  S+  ++ NS+L +
Sbjct: 1   MGFSRIARSALRQSPGTNPASRIPSSNYMNQTASHCEGLPQSGSYFFSVRYITTNSTLKH 60

Query: 54  LPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVV 113
           LPS +     +S  SRGI  TP  Q+  AER+ E+ E E +    PGL ATKPGEKPRVV
Sbjct: 61  LPS-VGTMDRLSFESRGISVTPQRQFPLAERVEEDPEVEVESRRLPGLGATKPGEKPRVV 119

Query: 114 VLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTS 173
           VLGTGW  CRFLKG+DTK+YD VCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS+IQ +
Sbjct: 120 VLGTGWAGCRFLKGLDTKMYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSQIQAA 179

Query: 174 LSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233
           L   PNSYFYLASC+GIDTDKHEVYCE V    L +EP+ F VAYDKLVIAAGAEPLTF 
Sbjct: 180 LGGAPNSYFYLASCMGIDTDKHEVYCEAVPGAGLPNEPYGFTVAYDKLVIAAGAEPLTFN 239

Query: 234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           IKGVKE+A+FLREVNHAQEIRKKLLLNLMLSENPG
Sbjct: 240 IKGVKEHAFFLREVNHAQEIRKKLLLNLMLSENPG 274

Source: Symplocarpus renifolius

Species: Symplocarpus renifolius

Genus: Symplocarpus

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475817|ref|XP_003608194.1| External NADH-ubiquinone oxidoreductase [Medicago truncatula] gi|355509249|gb|AES90391.1| External NADH-ubiquinone oxidoreductase [Medicago truncatula]

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/270 (68%), Positives = 212/270 (78%), Gaps = 7/270 (2%)

Query: 1   MALARLARSGLRRSGGAASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRM 60
           MALAR+ARS LRRSG +      +K++  E   T K   PS      +   SY+ S  + 
Sbjct: 1   MALARIARSNLRRSGVSVGSNVHEKNMFNERTYTTKGSLPS----HVDGPFSYI-SRNKE 55

Query: 61  TTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELS--YPGLEATKPGEKPRVVVLGTG 118
             +M+   RGI  T  +Q  N +R+VEESESE+++    Y GLEATKPGEKPRVVVLGTG
Sbjct: 56  QNNMNFSKRGITGTAFHQLPNTQRVVEESESEFEDDPTRYAGLEATKPGEKPRVVVLGTG 115

Query: 119 WGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDP 178
           W ACRFLKG+DT+IYD VCISPRNHMVFTPLLASTCVGTLEFRSVAEPV RIQ +L+ +P
Sbjct: 116 WAACRFLKGLDTRIYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVGRIQDALAKEP 175

Query: 179 NSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK 238
           NSYF+LASC G+DT+KHEVYCE V NG LS EP+QFKVAYDKLVIAAGAEPLTFGIKGVK
Sbjct: 176 NSYFFLASCTGVDTNKHEVYCEAVTNGGLSKEPYQFKVAYDKLVIAAGAEPLTFGIKGVK 235

Query: 239 ENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           E+A+FLREV HAQEIRK+LLLNLMLSENPG
Sbjct: 236 EHAFFLREVYHAQEIRKRLLLNLMLSENPG 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385274833|dbj|BAM13871.1| type II NAD(P)H dehydrogenase [Symplocarpus renifolius]

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 208/275 (75%), Gaps = 8/275 (2%)

Query: 1   MALARLARSGLRRSGGA-------ASCYSRQKDIGIEGLPTNKCFSPSLENVSRNSSLSY 53
           M  +R+ARS LR+S G        +S Y  Q     +GLP +  +  S+  ++ NS+L +
Sbjct: 1   MGFSRIARSALRQSPGTNPASRIPSSNYMNQTASHCKGLPQSGSYFFSVRYITTNSTLKH 60

Query: 54  LPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVV 113
           LPS +     +S  SRGI  TP  Q+  AER+ E+SE E +  S  GL ATKPGEKPRVV
Sbjct: 61  LPS-VGTMDRLSFESRGISVTPQRQFPLAERVEEDSEVEVESRSLRGLGATKPGEKPRVV 119

Query: 114 VLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTS 173
           VLGTGW  CRFLKG+DTK YD VCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS+IQ +
Sbjct: 120 VLGTGWAGCRFLKGLDTKRYDVVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSQIQAA 179

Query: 174 LSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG 233
           L   PNSYFYLASC+GIDTDKHEVYCE V    L +EP++F VAYDKLVIAAGAEPLTF 
Sbjct: 180 LGGAPNSYFYLASCMGIDTDKHEVYCEAVPGAGLPNEPYRFSVAYDKLVIAAGAEPLTFN 239

Query: 234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
           IKGVKE+A+FLREVNHAQEIRKKLLLNLMLSENPG
Sbjct: 240 IKGVKEHAFFLREVNHAQEIRKKLLLNLMLSENPG 274

Source: Symplocarpus renifolius

Species: Symplocarpus renifolius

Genus: Symplocarpus

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
TAIR|locus:2007427	510	NDA1 "AT1G07180" [Arabidopsis	0.387	0.335	0.719	8.8e-130
TAIR|locus:2045708	508	NDA2 "AT2G29990" [Arabidopsis	0.387	0.336	0.701	3e-129
TAIR|locus:2119667	580	NDB3 "AT4G21490" [Arabidopsis	0.371	0.282	0.431	1e-49
UNIPROTKB|G4N8E7	587	MGG_06276 "Uncharacterized pro	0.356	0.267	0.385	1.9e-46
DICTYBASE|DDB_G0295661	584	DDB_G0295661 "pyridine nucleot	0.358	0.270	0.403	2.5e-45
DICTYBASE|DDB_G0290197	654	DDB_G0290197 "putative NADH de	0.349	0.235	0.395	2.7e-45
DICTYBASE|DDB_G0270104	451	DDB_G0270104 "putative NADH de	0.319	0.312	0.467	3.3e-45
SGD|S000004753	560	NDE1 "Mitochondrial external N	0.380	0.3	0.372	9.5e-44
ASPGD|ASPL0000060585	570	ndiF [Emericella nidulans (tax	0.326	0.252	0.447	4.1e-42
TAIR|locus:2051431	582	NDB4 "AT2G20800" [Arabidopsis	0.335	0.254	0.372	5.7e-41

TAIR|locus:2007427 NDA1 "AT1G07180" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 8.8e-130, Sum P(2) = 8.8e-130
 Identities = 123/171 (71%), Positives = 142/171 (83%)

Query:    98 YPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGT 157
             Y GL  TK GEKPRV+VLG+GW  CR LKGIDT IYD VC+SPRNHMVFTPLLASTCVGT
Sbjct:    62 YDGLAPTKEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGT 121

Query:   158 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVA 217
             LEFRSVAEP+SRIQ ++S +P SY++LA+C  +D D HEV+CETV  G  + +P +FK+A
Sbjct:   122 LEFRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIA 181

Query:   218 YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
             YDKLV+A GAE  TFGI GV ENA FLREV+HAQEIR+KLLLNLMLSE PG
Sbjct:   182 YDKLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPG 232

GO:0003954 "NADH dehydrogenase activity" evidence=ISS;IMP

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0071482 "cellular response to light stimulus" evidence=IEP

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2045708 NDA2 "AT2G29990" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
 Identities = 120/171 (70%), Positives = 144/171 (84%)

Query:    98 YPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGT 157
             Y GL  T+ GEKPRVVVLG+GW  CR +KGIDT +YD VC+SPRNHMVFTPLLASTCVGT
Sbjct:    60 YSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGT 119

Query:   158 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVA 217
             LEFRSVAEP+SRIQ ++S +P S+F+LA+C  +D D HEV+CET+ +G  + +P +FK+A
Sbjct:   120 LEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIA 179

Query:   218 YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
             YDKLVIA+GAE  TFGI GV ENA FLREV+HAQEIR+KLLLNLMLS+ PG
Sbjct:   180 YDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPG 230

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2119667 NDB3 "AT4G21490" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
 Identities = 73/169 (43%), Positives = 96/169 (56%)

Query:   100 GLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLE 159
             G+E TK   K +VV+LGTGW    FLK ++   Y+   ISPRN+  FTPLL S   GT+E
Sbjct:    48 GVE-TKT-RKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGTVE 105

Query:   160 FRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYD 219
              RSV EP+  I    + + +  F  A C  ID    +VYC +   G  S    +F V YD
Sbjct:   106 ARSVVEPIRNIARKQNVEMS--FLEAECFKIDPGSKKVYCRS-KQGVNSKGKKEFDVDYD 162

Query:   220 KLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
              LVIA GA+  TF I GV+EN +FL+EV  AQ IR  ++ +   +  PG
Sbjct:   163 YLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPG 211

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G4N8E7 MGG_06276 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 294 (108.6 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
 Identities = 62/161 (38%), Positives = 95/161 (59%)

Query:    98 YPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGT 157
             +P   A     +  +V+LGTGWG+   +K +D + Y+ + ISPRN+ +FTPLL S   GT
Sbjct:   109 HPDEPADPDPNRKTLVILGTGWGSVSLMKNLDVENYNVIVISPRNYFLFTPLLPSCTTGT 168

Query:   158 LEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVA 217
             +E RS+ EPV  I  +  +     +Y A    ID D+  V  +  +  ++  +  + +V 
Sbjct:   169 IEHRSIMEPVRTILRNKKAKVK--YYEAEASSIDPDRKVV--KIFDTSEVKGDMAETEVP 224

Query:   218 YDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
             YD LV+  GAE  TFGI GV+E++ FL+E+  AQ IRKK++
Sbjct:   225 YDMLVVGVGAENATFGIPGVREHSCFLKEIGDAQLIRKKIM 265

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0295661 DDB_G0295661 "pyridine nucleotide-disulphide oxidoreductase, NAD-binding region domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 337 (123.7 bits), Expect = 2.5e-45, Sum P(2) = 2.5e-45
 Identities = 65/161 (40%), Positives = 101/161 (62%)

Query:   108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
             ++P+VV+LGTGWG+  FL+ + T ++D   ISPRN+ +FTPLL     GT+E RS+ EP+
Sbjct:   111 KRPKVVILGTGWGSLCFLRKLHTDLFDVTIISPRNYFLFTPLLVGGTTGTVEVRSIMEPI 170

Query:   168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
              +      ++ ++ FY A C+ +D    +V C   +N  +  E  +F++ YD L++  GA
Sbjct:   171 RKYCKRADAE-DATFYEAECLSVDPVSKKVKC--YDNSAVKGEVSEFELEYDHLIVGVGA 227

Query:   228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG 268
             +  TFGI GVKENA FL+E+N  + IR K++  L  +  PG
Sbjct:   228 DNQTFGIPGVKENACFLKEINDTRNIRDKIIDCLETASYPG 268

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0290197 DDB_G0290197 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 304 (112.1 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
 Identities = 64/162 (39%), Positives = 101/162 (62%)

Query:    99 PGLEATK-PGEK-PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVG 156
             P L+  K P  K  R++VLGTGW +  F++ ID   Y+ V +SPRN+ +FTP+L    VG
Sbjct:   116 PQLQLPKDPNNKRERIIVLGTGWASLSFIQEIDLNKYEIVVVSPRNYFLFTPMLTEATVG 175

Query:   157 TLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKV 216
             ++E RS+ EP+ R+ + L+S P +Y   A C  ID   + +  ET ++G  +    + K+
Sbjct:   176 SVEVRSIIEPIRRVLSRLTSRPTTYIE-AECTNIDYVNNCIEIET-HDGSEA----KAKI 229

Query:   217 AYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
              YD+LV+A G+ P  FG KGV+E+  +L+E   A +IR+K++
Sbjct:   230 QYDRLVVAVGSVPQCFGTKGVEEHCIYLKEAMDAHKIRQKIM 271

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0270104 DDB_G0270104 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 334 (122.6 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 71/152 (46%), Positives = 102/152 (67%)

Query:   108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
             E  ++++LG GWG+  FLK +++  YD   ISPRNH +FTPLL S+ VGTLEFRS+AEPV
Sbjct:    38 ENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPV 97

Query:   168 SRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
                +T+   D N + Y+ AS   I+ + + V  ++       H    F++ YDKLVI  G
Sbjct:    98 ---RTT--RDINEFKYIQASVTSINPENNSVLVKST-----FHNEKPFEMKYDKLVIGVG 147

Query:   227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
             +   TFGIKGV+ENA FL+E++HA+EIR+K++
Sbjct:   148 SRNNTFGIKGVEENANFLKELHHAREIRQKII 179

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

SGD|S000004753 NDE1 "Mitochondrial external NADH dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 293 (108.2 bits), Expect = 9.5e-44, Sum P(2) = 9.5e-44
 Identities = 66/177 (37%), Positives = 105/177 (59%)

Query:   107 GEKPR-VVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE 165
             G K + +V+LG+GWG+   LK +DT +Y+ V +SPRN+ +FTPLL ST VGT+E +S+ E
Sbjct:   109 GSKRKTLVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVE 168

Query:   166 PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225
             PV  I  +  S    ++Y A    +D +   +  +  ++ K  +  +   + YD LV+  
Sbjct:   169 PVRTI--ARRSHGEVHYYEAEAYDVDPENKTI--KVKSSAK--NNDYDLDLKYDYLVVGV 222

Query:   226 GAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL--MLSENPGDTVQLFSKYFVI 280
             GA+P TFG  GV E + FL+E++ AQEIR K++ ++    S +P D  +     FV+
Sbjct:   223 GAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAASLSPKDPERARLLSFVV 279

GO:0001300 "chronological cell aging" evidence=IMP

GO:0003954 "NADH dehydrogenase activity" evidence=ISS;IDA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA

GO:0006116 "NADH oxidation" evidence=IDA

GO:0019655 "glucose catabolic process to ethanol" evidence=IMP

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

ASPGD|ASPL0000060585 ndiF [Emericella nidulans (taxid:162425)]

 Score = 307 (113.1 bits), Expect = 4.1e-42, Sum P(2) = 4.1e-42
 Identities = 68/152 (44%), Positives = 93/152 (61%)

Query:   109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
             K  +V+LGTGWG+   LK +DT+ Y+ V ISPRN+ +FTPLL S   G +E RS+ EP+ 
Sbjct:   103 KKTLVILGTGWGSVSLLKKLDTENYNVVVISPRNYFLFTPLLPSCTTGQVEHRSIMEPIR 162

Query:   169 RIQTSLSSDPNSYFYLASCIGIDTDKHEVYC--ETVNNGKLSHEPHQFKVAYDKLVIAAG 226
              I     +     FY A    +D +K  VY   ++   G +SH     +V +D LV+  G
Sbjct:   163 SILRHKKAHVK--FYEAEATKVDYEKRIVYISDDSEIKGDISHT----EVPFDMLVMGVG 216

Query:   227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
             AE  TFGIKGVKEN+ FL+EV  AQ IRK+++
Sbjct:   217 AENATFGIKGVKENSCFLKEVGDAQRIRKRIM 248

GO:0006091 "generation of precursor metabolites and energy" evidence=RCA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=RCA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2051431 NDB4 "AT2G20800" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 5.7e-41, Sum P(3) = 5.7e-41
 Identities = 57/153 (37%), Positives = 84/153 (54%)

Query:   106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE 165
             P  K +VVVLG+GW    FL  ++   YD   +SPRN  +FTPLL S   GT+E RS+ E
Sbjct:    60 PIRKKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVE 119

Query:   166 PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225
             P+  +      +    +  A C+ ID    +++C +     L     +F + YD L++A 
Sbjct:   120 PIRGLMRKKGFE----YKEAECVKIDASNKKIHCRSKEGSSLKGTT-EFDMDYDILILAV 174

Query:   226 GAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL 258
             GA+P TF   GV+E+AYFL+E   A  IR  ++
Sbjct:   175 GAKPNTFNTPGVEEHAYFLKEAEDALNIRHSVI 207

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XI.2060.1 hypothetical protein (488 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	441
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-55
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	3e-42
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	9e-31
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-29
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	8e-08
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	5e-05

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score =  189 bits (481), Expect = 2e-55
 Identities = 74/160 (46%), Positives = 101/160 (63%), Gaps = 5/160 (3%)

Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           +KP VVVLGTGW    F++ +D K Y+   ISPRNHM+FTPLL  T  GTLEFRS+ EP 
Sbjct: 9   KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEP- 67

Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
             ++ +L+  PN Y   A    +D ++  V C  V+    ++    F V YDKLV+A GA
Sbjct: 68  --VRPALAKLPNRY-LRAVVYDVDFEEKRVKCGVVSKSNNANVN-TFSVPYDKLVVAHGA 123

Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267
            P TF I GV+E A+FL+EVNHA+ IRK+++  +  +  P
Sbjct: 124 RPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLP 163

Length = 424

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score =  153 bits (389), Expect = 3e-42
 Identities = 72/150 (48%), Positives = 93/150 (62%), Gaps = 21/150 (14%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQD 351
           +I VD+ LR   + +VFALGDCA   E   +P LP LAQVA +QG YLA+ FN ++    
Sbjct: 296 RISVDDHLRVKPIPNVFALGDCAANEE---RP-LPTLAQVASQQGVYLAKEFNNELK--- 348

Query: 352 GGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAY 411
            GK +S        PFVY+ LGS+A +G Y A+V L          L+GF + L WRSAY
Sbjct: 349 -GKPMSK-------PFVYRSLGSLAYLGNYSAIVQL------GAFDLSGFKALLFWRSAY 394

Query: 412 LTRVLSWRNRFYVAVNWATTFVFGRDISRI 441
           LT + SWR++ YV VNWA T +FGRDI+R 
Sbjct: 395 LTILGSWRSKLYVLVNWAGTAIFGRDITRF 424

Length = 424

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  121 bits (307), Expect = 9e-31
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEP 166
           K R+V+LG G+G     K +  K+   +   +  R++ +FTPLL     GTL    +A P
Sbjct: 3   KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP 62

Query: 167 VSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
           +  +   L    N  F       ID D  +V   T+ +          +++YD LV+A G
Sbjct: 63  LRAL---LRKSGNVQFVQGEVTDIDRDAKKV---TLADLG--------EISYDYLVVALG 108

Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP 267
           +E   FGI G  E A+ L+ +  A  +R+ LL     +   
Sbjct: 109 SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQE 149

Length = 405

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  117 bits (295), Expect = 4e-29
 Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 21/151 (13%)

Query: 289 RLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG 348
           R  ++ V+  L+ P   D+FA GDCA  ++   +PV P  AQ A +QG+Y A+    ++ 
Sbjct: 276 RRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPV-PPTAQAAHQQGEYAAKNIKARLK 332

Query: 349 EQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWR 408
               GK L         PF YK  G++A++G + A+ DL       G+ L GFL+WL+ R
Sbjct: 333 ----GKPL--------KPFKYKDKGTLASLGDFSAVADL------GGVKLKGFLAWLLKR 374

Query: 409 SAYLTRVLSWRNRFYVAVNWATTFVFGRDIS 439
           +AYL  +L  R+R  VA+ W TT++ GR  S
Sbjct: 375 AAYLYYLLGIRSRLAVALYWLTTYLTGRRSS 405

Length = 405

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 16/151 (10%)

Query: 111 RVVVLGTGWGACRFLKGIDTKIYDAVCIS--PRNHMVFTPLLASTCVGTLEFRSVAEPVS 168
            VV++G G         +         I            L     +   E   +A  ++
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 169 RIQTSLSSDPNSYFYL--ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
             +            L     + ID  +  V  + V  G         ++ YDKL+IA G
Sbjct: 61  LPEEVYKE--FGVEVLLGTEVVDIDRGEKTVVLKDVETG--------REITYDKLIIATG 110

Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
           A P   GI GV      LR V  + EI + L
Sbjct: 111 ARPRIPGIPGV--EVATLRGVIDSDEILELL 139

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLRE 246
           + +D     +  + +  G        F   YDKL+IA GA P+   IK +  EN Y L+ 
Sbjct: 80  VKVDAKNKTITVKNLKTGS------IFNDTYDKLMIATGARPIIPPIKNINLENVYTLKS 133

Query: 247 VNHAQEIRKKL 257
           +     +++ L
Sbjct: 134 MEDGLALKELL 144

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.97
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.97
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.97
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.97
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.96
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.93
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.93
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.92
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.91
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.91
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.9
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.87
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.86
PLN02507	499	glutathione reductase	99.86
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.86
PRK14694	468	putative mercuric reductase; Provisional	99.86
PRK06370	463	mercuric reductase; Validated	99.85
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.85
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.84
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.84
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.84
PRK13748	561	putative mercuric reductase; Provisional	99.83
PRK06116	450	glutathione reductase; Validated	99.83
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.83
PTZ00058	561	glutathione reductase; Provisional	99.83
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.83
PRK14727	479	putative mercuric reductase; Provisional	99.83
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.83
PLN02546	558	glutathione reductase	99.83
TIGR02053	463	MerA mercuric reductase. This model represents the	99.82
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.82
PRK07846	451	mycothione reductase; Reviewed	99.82
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.82
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.81
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.81
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.81
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.81
PRK10262	321	thioredoxin reductase; Provisional	99.81
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.8
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.79
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.78
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.78
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.78
PTZ00052	499	thioredoxin reductase; Provisional	99.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.76
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.75
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.74
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.73
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.72
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.71
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.71
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.7
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.69
PLN02852	491	ferredoxin-NADP+ reductase	99.65
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.65
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.64
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.59
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.59
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.52
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.5
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.31
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.28
COG2081	408	Predicted flavoproteins [General function predicti	99.26
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.26
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.22
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.22
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	99.12
KOG2755	334	consensus Oxidoreductase [General function predict	99.08
PTZ00188	506	adrenodoxin reductase; Provisional	99.01
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.98
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.93
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.92
PLN02463	447	lycopene beta cyclase	98.91
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.84
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.82
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.78
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.77
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.74
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.73
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.73
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.72
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.72
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.7
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.68
PRK06370	463	mercuric reductase; Validated	98.66
PRK07846	451	mycothione reductase; Reviewed	98.66
TIGR02053	463	MerA mercuric reductase. This model represents the	98.65
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.64
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.62
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.62
PLN02697	529	lycopene epsilon cyclase	98.61
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.61
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.6
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.58
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.57
PRK06116	450	glutathione reductase; Validated	98.57
PLN02507	499	glutathione reductase	98.55
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.54
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.52
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.51
PRK14694	468	putative mercuric reductase; Provisional	98.48
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.45
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.44
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.44
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.43
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.43
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.42
PTZ00052	499	thioredoxin reductase; Provisional	98.42
PTZ00058	561	glutathione reductase; Provisional	98.42
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.41
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.41
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.4
PRK06847	375	hypothetical protein; Provisional	98.4
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.4
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.4
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.36
PLN02661	357	Putative thiazole synthesis	98.35
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.35
PRK07236	386	hypothetical protein; Provisional	98.34
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.33
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.33
PRK13748	561	putative mercuric reductase; Provisional	98.33
PRK14727	479	putative mercuric reductase; Provisional	98.32
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.28
PLN02546	558	glutathione reductase	98.28
PRK10262	321	thioredoxin reductase; Provisional	98.26
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.26
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.26
PRK10157	428	putative oxidoreductase FixC; Provisional	98.25
PRK08163	396	salicylate hydroxylase; Provisional	98.24
PRK10015	429	oxidoreductase; Provisional	98.24
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.22
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.19
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.19
PRK05868	372	hypothetical protein; Validated	98.18
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.17
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.14
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.14
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.13
PRK09126	392	hypothetical protein; Provisional	98.13
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.13
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.12
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.12
PRK09897	534	hypothetical protein; Provisional	98.11
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.11
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.08
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.08
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.08
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.08
PRK06834	488	hypothetical protein; Provisional	98.07
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.07
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.06
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.05
PRK06184	502	hypothetical protein; Provisional	98.04
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.03
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.03
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.02
PRK06126	545	hypothetical protein; Provisional	98.02
PRK08244	493	hypothetical protein; Provisional	98.02
PRK06753	373	hypothetical protein; Provisional	98.01
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.0
PRK07588	391	hypothetical protein; Provisional	98.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.99
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.98
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.95
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.92
PLN02487	569	zeta-carotene desaturase	97.91
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.91
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.9
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.9
PRK11445	351	putative oxidoreductase; Provisional	97.9
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.89
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.89
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.88
PLN02985	514	squalene monooxygenase	97.87
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.85
PRK07190	487	hypothetical protein; Provisional	97.83
PRK12831	464	putative oxidoreductase; Provisional	97.79
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.78
PRK07208	479	hypothetical protein; Provisional	97.76
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.76
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.76
COG3349	485	Uncharacterized conserved protein [Function unknow	97.75
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.73
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.73
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.73
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.72
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.71
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.71
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.7
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.69
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.68
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.68
PLN02268	435	probable polyamine oxidase	97.62
PRK06475	400	salicylate hydroxylase; Provisional	97.61
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.61
PRK07045	388	putative monooxygenase; Reviewed	97.6
PRK07233	434	hypothetical protein; Provisional	97.58
PRK08013	400	oxidoreductase; Provisional	97.57
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.54
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.52
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.52
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.52
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.52
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.49
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.48
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.46
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.44
PLN02529	738	lysine-specific histone demethylase 1	97.44
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.43
PRK06185	407	hypothetical protein; Provisional	97.42
PLN02576	496	protoporphyrinogen oxidase	97.42
PRK07538	413	hypothetical protein; Provisional	97.41
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.39
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.39
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.38
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.37
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.37
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.37
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.36
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.36
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.35
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.35
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.35
PLN02568	539	polyamine oxidase	97.33
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.33
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.29
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.29
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.27
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.23
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.22
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.22
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.21
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.21
PLN02612	567	phytoene desaturase	97.17
PTZ00367	567	squalene epoxidase; Provisional	97.14
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.14
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.14
PRK08294	634	phenol 2-monooxygenase; Provisional	97.13
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.13
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.12
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.12
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.1
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.09
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.07
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.06
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.05
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.01
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.99
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	96.97
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.97
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.97
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	96.96
PLN02676	487	polyamine oxidase	96.95
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.9
PRK08274	466	tricarballylate dehydrogenase; Validated	96.88
PRK06996	398	hypothetical protein; Provisional	96.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.84
PLN03000	881	amine oxidase	96.84
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.82
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.82
PRK13984	604	putative oxidoreductase; Provisional	96.81
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.8
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.79
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	96.78
PRK08401	466	L-aspartate oxidase; Provisional	96.75
PRK07121	492	hypothetical protein; Validated	96.73
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.72
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.7
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	96.7
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.7
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.69
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.61
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.6
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	96.57
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.52
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.49
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.4
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.4
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	96.39
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	96.38
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.32
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	96.29
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.27
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.26
PRK05257	494	malate:quinone oxidoreductase; Validated	96.23
PRK07804	541	L-aspartate oxidase; Provisional	96.23
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.22
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.21
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.2
PLN02976	1713	amine oxidase	96.18
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.15
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.14
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.13
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.13
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	96.13
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	96.13
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.13
COG0579	429	Predicted dehydrogenase [General function predicti	96.12
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.12
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.07
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.06
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.04
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.03
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.99
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.99
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.99
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	95.96
PTZ00383	497	malate:quinone oxidoreductase; Provisional	95.94
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	95.92
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.92
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	95.92
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.91
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.91
PRK12839	572	hypothetical protein; Provisional	95.9
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	95.89
PRK13339	497	malate:quinone oxidoreductase; Reviewed	95.88
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	95.88
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	95.87
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.84
PRK06175	433	L-aspartate oxidase; Provisional	95.82
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	95.81
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	95.81
PRK08275	554	putative oxidoreductase; Provisional	95.8
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	95.79
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.79
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.79
PRK08071	510	L-aspartate oxidase; Provisional	95.73
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	95.73
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.72
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.66
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	95.64
PRK02106	560	choline dehydrogenase; Validated	95.61
PRK07395	553	L-aspartate oxidase; Provisional	95.57
PLN02815	594	L-aspartate oxidase	95.5
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.5
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.42
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.35
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.34
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.29
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	95.24
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	95.19
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.18
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.17
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	95.15
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.11
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	95.09
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.07
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.06
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.99
PRK09077	536	L-aspartate oxidase; Provisional	94.95
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	94.94
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	94.93
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.92
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	94.86
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.77
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.76
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.74
PRK07512	513	L-aspartate oxidase; Provisional	94.73
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	94.69
KOG2852	380	consensus Possible oxidoreductase [General functio	94.65
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.61
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	94.58
PLN02852	491	ferredoxin-NADP+ reductase	94.51
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.31
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.31
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	94.24
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.22
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.21
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.02
PRK08275	554	putative oxidoreductase; Provisional	93.93
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.9
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.9
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.71
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.7
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.6
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.51
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.4
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.39
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.23
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	93.2
PRK04148	134	hypothetical protein; Provisional	93.13
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.11
PLN02785	587	Protein HOTHEAD	93.11
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	92.98
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.95
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	92.88
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.76
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.76
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.74
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	92.73
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.59
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.55
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	92.53
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	92.49
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.46
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.42
COG3573	552	Predicted oxidoreductase [General function predict	92.38
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.22
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.2
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.08
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.97
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.9
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.89
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.87
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	91.8
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	91.77
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.77
PRK07804	541	L-aspartate oxidase; Provisional	91.77
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.7
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.68
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	91.66
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	91.65
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	91.64
PRK08071	510	L-aspartate oxidase; Provisional	91.29
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	91.24
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.21
KOG2853	509	consensus Possible oxidoreductase [General functio	91.18
PRK09077	536	L-aspartate oxidase; Provisional	91.17
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.15
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	91.13
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.1
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	91.08
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	90.97
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.86
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.82
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	90.81
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	90.79
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.77
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.77
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	90.7
PLN02494	477	adenosylhomocysteinase	90.62
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	90.5
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.47
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	90.4
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.32
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.22
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.18
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	90.18
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.9
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	89.85
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	89.84
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.75
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.74
PLN02353	473	probable UDP-glucose 6-dehydrogenase	89.71
PRK15116	268	sulfur acceptor protein CsdL; Provisional	89.67
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	89.65
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.62
PRK08401	466	L-aspartate oxidase; Provisional	89.6
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.58
PRK06223	307	malate dehydrogenase; Reviewed	89.57
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.56
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.54
PRK08017	256	oxidoreductase; Provisional	89.53
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	89.53
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	89.48
PTZ00082	321	L-lactate dehydrogenase; Provisional	89.46
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	89.45
PRK07512	513	L-aspartate oxidase; Provisional	89.43
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	89.4
PRK06849	389	hypothetical protein; Provisional	89.38
PRK09496	453	trkA potassium transporter peripheral membrane com	89.31
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	89.2
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	89.18
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	89.12
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	88.98
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	88.94
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	88.94
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	88.93
PRK06057	255	short chain dehydrogenase; Provisional	88.93
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.92
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	88.92
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	88.8
PRK09496	453	trkA potassium transporter peripheral membrane com	88.79
PRK05993	277	short chain dehydrogenase; Provisional	88.77
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.69
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	88.67
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.53

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=100.00  E-value=4.4e-53  Score=410.63  Aligned_cols=323  Identities=49%  Similarity=0.758  Sum_probs=267.1

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      ....+|+|||+|+|++|.++++.|...-|+|+||+++++|.|+|+||..+.|..+.+.+.+|++.+..  .+..++.++.
T Consensus        51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r--~k~~~~~y~e  128 (491)
T KOG2495|consen   51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIAR--KKNGEVKYLE  128 (491)
T ss_pred             CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhh--ccCCCceEEe
Confidence            34557899999999999999999999999999999999999999999999999999999999998842  2234789999


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      ++...||++.+.|.++....+..   ..+..+.|||||+|+|++++++++||..+++++++.++||.+++.++.++++.+
T Consensus       129 Aec~~iDp~~k~V~~~s~t~~~~---~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a  205 (491)
T KOG2495|consen  129 AECTKIDPDNKKVHCRSLTADSS---DKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA  205 (491)
T ss_pred             cccEeecccccEEEEeeeccCCC---cceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence            99999999999999988644321   344688999999999999999999999999999999999999999887666543


Q ss_pred             cC------------------CCCceeEeeC-------------------ceEEE-------EccCCcccC----------
Q 013561          265 EN------------------PGDTVQLFSK-------------------YFVIT-------ITLSFLVRL----------  290 (441)
Q Consensus       265 ~~------------------~G~~~vE~a~-------------------~v~V~-------il~~~~~~l----------  290 (441)
                      ..                  +|.+|||+|.                   .++|+       +|+.|+..+          
T Consensus       206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~  285 (491)
T KOG2495|consen  206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR  285 (491)
T ss_pred             hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence            21                  6899999982                   24555       233332211          


Q ss_pred             ----------------------------------------------------------C--ceeeCCCcccCCCCCEEEe
Q 013561          291 ----------------------------------------------------------S--QIGVDEWLRAPSVEDVFAL  310 (441)
Q Consensus       291 ----------------------------------------------------------G--~I~Vd~~lqt~~~~~VfA~  310 (441)
                                                                                |  ++.||++||+++.+||||+
T Consensus       286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi  365 (491)
T KOG2495|consen  286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI  365 (491)
T ss_pred             ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence                                                                      5  7999999999999999999


Q ss_pred             cccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccc----cCCCCCCCceeecceeEEEecCCceeee
Q 013561          311 GDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSA----KDINLGDPFVYKHLGSMATVGRYKALVD  386 (441)
Q Consensus       311 GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~----~~~~~~~~f~~~~~g~~~~lG~~~av~~  386 (441)
                      |||+..      +..+++||+|.|||.++|+++.....-....+..+.    ......+||+|+++|.+++||+.+++++
T Consensus       366 GDca~~------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAd  439 (491)
T KOG2495|consen  366 GDCADQ------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIAD  439 (491)
T ss_pred             cccccc------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhc
Confidence            999943      236779999999999999999865542111010010    0011139999999999999999999999


Q ss_pred             cccccCCCCeEEccHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCCCCC
Q 013561          387 LRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI  441 (441)
Q Consensus       387 ~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  441 (441)
                      ++-+   +.+.+.|..+|++|+++|+.++.|||+|++|++||++.+|||||++++
T Consensus       440 l~~g---~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i  491 (491)
T KOG2495|consen  440 LPVG---KMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI  491 (491)
T ss_pred             CccC---CeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence            9743   348999999999999999999999999999999999999999999985

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=6.9e-51  Score=405.67  Aligned_cols=295  Identities=35%  Similarity=0.578  Sum_probs=261.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      ++++|||||||++|+.+|..|.+.  +++||+||+++++.|.|+||+++.|.++.+++..+++++   +....++.|+++
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~---~~~~~~v~~~~~   78 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL---LRKSGNVQFVQG   78 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHH---hcccCceEEEEE
Confidence            367999999999999999999886  499999999999999999999999999999999999988   554557999999


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhc----
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL----  261 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~----  261 (441)
                      +|++||.++++|++.+.           .+++||+||||+|++++++++||..|+++++++++||.+++.++...+    
T Consensus        79 ~V~~ID~~~k~V~~~~~-----------~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~  147 (405)
T COG1252          79 EVTDIDRDAKKVTLADL-----------GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS  147 (405)
T ss_pred             EEEEEcccCCEEEeCCC-----------ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998872           379999999999999999999999999999999999999999886322    


Q ss_pred             -----------ccccCCCCceeEeeC------------------ceEEE-------EccCCcccC---------------
Q 013561          262 -----------MLSENPGDTVQLFSK------------------YFVIT-------ITLSFLVRL---------------  290 (441)
Q Consensus       262 -----------~~a~~~G~~~vE~a~------------------~v~V~-------il~~~~~~l---------------  290 (441)
                                 .+++ +|.+|||+|.                  +++|+       |||.|++++               
T Consensus       148 ~~~~~~~~lti~IvG-gG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v  226 (405)
T COG1252         148 QEEDDRALLTIVIVG-GGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEV  226 (405)
T ss_pred             ccccccceeEEEEEC-CChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEE
Confidence                       2233 7999999981                  12443       444444322               


Q ss_pred             ---------------------------------------------------CceeeCCCcccCCCCCEEEeccccccccc
Q 013561          291 ---------------------------------------------------SQIGVDEWLRAPSVEDVFALGDCAGFLEQ  319 (441)
Q Consensus       291 ---------------------------------------------------G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~  319 (441)
                                                                         |++.||++||++++|+|||+|||+.+.++
T Consensus       227 ~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~  306 (405)
T COG1252         227 LLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP  306 (405)
T ss_pred             EcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence                                                               89999999999999999999999998764


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecceeEEEecCCceeeecccccCCCCeEEc
Q 013561          320 TGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLA  399 (441)
Q Consensus       320 ~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~  399 (441)
                         .+.|++|+.|+|||+++|+||.+.+.    |+       ++ +||+|++.|++++||.+.||+.+      +++.++
T Consensus       307 ---~p~P~tAQ~A~Qqg~~~a~ni~~~l~----g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~~l~  365 (405)
T COG1252         307 ---RPVPPTAQAAHQQGEYAAKNIKARLK----GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGVKLK  365 (405)
T ss_pred             ---CCCCChhHHHHHHHHHHHHHHHHHhc----CC-------CC-CCCcccceEEEEEccCCceeEEe------cceeec
Confidence               47899999999999999999999996    76       54 99999999999999999999998      358999


Q ss_pred             cHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCC
Q 013561          400 GFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDI  438 (441)
Q Consensus       400 G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  438 (441)
                      |+++|++|+.+|+.++..+++++++..+|+..++++++.
T Consensus       366 G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~  404 (405)
T COG1252         366 GFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS  404 (405)
T ss_pred             cHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence            999999999999999999999999999999999999875

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=386.35  Aligned_cols=309  Identities=48%  Similarity=0.802  Sum_probs=250.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      .+++++|||||||+||+.+|+.|.+.+++|||||+++++.|.|++++...|..+.+++..+++..   +. ..++.|+.+
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~i~~   82 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA---LA-KLPNRYLRA   82 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH---hc-cCCeEEEEE
Confidence            34577999999999999999999887899999999999999999999998887777666666554   22 346899999


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHh-----
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLN-----  260 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~-----  260 (441)
                      +|++||.+++.|.+.....+. ....+..+++||+||||||+.|+.+++||..++++++++++++.++++.+..+     
T Consensus        83 ~V~~Id~~~~~v~~~~~~~~~-~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~  161 (424)
T PTZ00318         83 VVYDVDFEEKRVKCGVVSKSN-NANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS  161 (424)
T ss_pred             EEEEEEcCCCEEEEecccccc-cccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999884311000 00011247999999999999999999999988999999999999988776432     


Q ss_pred             --------------cccccCCCCceeEeeC-------------------ceEEE-------EccCCcccC----------
Q 013561          261 --------------LMLSENPGDTVQLFSK-------------------YFVIT-------ITLSFLVRL----------  290 (441)
Q Consensus       261 --------------~~~a~~~G~~~vE~a~-------------------~v~V~-------il~~~~~~l----------  290 (441)
                                    +.+.+ +|..|+|+|.                   +++|+       +++.+++.+          
T Consensus       162 ~~~~~~~~~~~~~~vvVvG-gG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~  240 (424)
T PTZ00318        162 LPTTSVEERKRLLHFVVVG-GGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRR  240 (424)
T ss_pred             CCCCChHHHhccCEEEEEC-CCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHH
Confidence                          22222 5677777662                   23344       112111110          


Q ss_pred             ------------------------------------------------------CceeeCCCcccCCCCCEEEecccccc
Q 013561          291 ------------------------------------------------------SQIGVDEWLRAPSVEDVFALGDCAGF  316 (441)
Q Consensus       291 ------------------------------------------------------G~I~Vd~~lqt~~~~~VfA~GD~a~~  316 (441)
                                                                            |+|.||++||++++|||||+|||+.+
T Consensus       241 ~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~  320 (424)
T PTZ00318        241 LGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN  320 (424)
T ss_pred             CCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence                                                                  78999999997699999999999976


Q ss_pred             cccCCCCCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecceeEEEecCCceeeecccccCCCCe
Q 013561          317 LEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGI  396 (441)
Q Consensus       317 ~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~~~~~  396 (441)
                      .+    .+.|++++.|++||+++|+||.+.|.    |++      + .+||.|...|++++||+++||+++      +++
T Consensus       321 ~~----~~~~~~~~~A~~qg~~~A~ni~~~l~----g~~------~-~~~~~~~~~g~~~~lG~~~av~~~------~~~  379 (424)
T PTZ00318        321 EE----RPLPTLAQVASQQGVYLAKEFNNELK----GKP------M-SKPFVYRSLGSLAYLGNYSAIVQL------GAF  379 (424)
T ss_pred             CC----CCCCCchHHHHHHHHHHHHHHHHHhc----CCC------C-CCCCeecCCceEEEecCCceEEEc------CCc
Confidence            42    24688999999999999999999986    551      2 399999999999999999999987      468


Q ss_pred             EEccHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCCCCC
Q 013561          397 SLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISRI  441 (441)
Q Consensus       397 ~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  441 (441)
                      .++|++||++|+++|+.+++++++|++++.+|+.++||+||+.|+
T Consensus       380 ~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  424 (424)
T PTZ00318        380 DLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF  424 (424)
T ss_pred             eEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence            999999999999999999999999999999999999999999873

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=340.59  Aligned_cols=195  Identities=17%  Similarity=0.155  Sum_probs=155.5

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKP  106 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~  106 (441)
                      -|||++++++ |++|++.|.+|||||||||||||+|||++|++|+. .+|+.|..+|+.|.|++|+   ++|.+|.+|..
T Consensus      1708 ~~nelvfk~~-wk~al~~ll~tnnfpeftgrvcpapcegactlgii-e~pv~iksie~aiid~af~---egwm~p~pp~~ 1782 (2142)
T KOG0399|consen 1708 KFNELVFKNQ-WKEALEQLLETNNFPEFTGRVCPAPCEGACTLGII-EPPVGIKSIECAIIDKAFE---EGWMKPCPPAF 1782 (2142)
T ss_pred             cHHHHHHHHH-HHHHHHHHHhhCCCccccCccCCCCcCcceeeecc-cCCccccchhhHHHHHHHH---hcCCccCCccc
Confidence            5999999999 99999999999999999999999999999999986 5567888899999999998   89999999999


Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .++++|+|||+|||||+||.+|.+.||.|||+||.++.+ ..++|+++...++    ...+++... +...++++|+.+.
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g-gll~ygipnmkld----k~vv~rrv~-ll~~egi~f~tn~ 1856 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG-GLLMYGIPNMKLD----KFVVQRRVD-LLEQEGIRFVTNT 1856 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC-ceeeecCCccchh----HHHHHHHHH-HHHhhCceEEeec
Confidence            999999999999999999999999999999999999987 2333444433322    223444444 3445789997765


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcccccccccCHhHHHHHH
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVKENAYFLREVNHAQEIR  254 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~~~~~~l~~~~~a~~~~  254 (441)
                      -++-+     +.+..            ....+|++|+|+|+. |+.+++||.+     ++++.-|.++.
T Consensus      1857 eigk~-----vs~d~------------l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l 1903 (2142)
T KOG0399|consen 1857 EIGKH-----VSLDE------------LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFL 1903 (2142)
T ss_pred             ccccc-----ccHHH------------HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHH
Confidence            54432     33222            245799999999986 8999999985     34444444444

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=2.2e-37  Score=341.98  Aligned_cols=191  Identities=14%  Similarity=0.141  Sum_probs=138.4

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhccccccccc---CCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQEL---SYPGL  101 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~---~~~~~  101 (441)
                      -||+++++|+ |.+|+++|++|||||++||||||+  +||.+|+++   ..|++|+.+||+|.|++.+....   .+...
T Consensus       222 ~~i~~i~~g~-~~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~---~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~  297 (944)
T PRK12779        222 EMLDLLGNGK-HREALELIESCNPLPNVTGRVCPQELQCQGVCTHT---KRPIEIGQLEWYLPQHEKLVNPNANERFAGR  297 (944)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHhCChhHHhcCcCCCccCHHHhccCC---CcCcchhHHHHHHHHHHHhhchhhhhccccc
Confidence            4999999999 999999999999999999999999  699999998   24788999999999964432211   11111


Q ss_pred             -CCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCE
Q 013561          102 -EATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNS  180 (441)
Q Consensus       102 -~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v  180 (441)
                       .+-.+.++|||+|||||||||+||.+|++.||+|||||+.+.++  +++   .+|+++++.-...+.+..+.+. ..++
T Consensus       298 ~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G--G~l---~yGIP~~rlp~~vi~~~i~~l~-~~Gv  371 (944)
T PRK12779        298 ISPWAAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG--GVL---RYGIPEFRLPNQLIDDVVEKIK-LLGG  371 (944)
T ss_pred             ccccccCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC--ceE---EccCCCCcChHHHHHHHHHHHH-hhcC
Confidence             11112358999999999999999999999999999999998765  333   3455544322222333323233 3578


Q ss_pred             EEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-ccccc
Q 013561          181 YFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAYF  243 (441)
Q Consensus       181 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~~  243 (441)
                      .|..+..++.     .+++++.           ....||+||||||+. |+.+++||.+ +++++
T Consensus       372 ~f~~n~~vG~-----dit~~~l-----------~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~  420 (944)
T PRK12779        372 RFVKNFVVGK-----TATLEDL-----------KAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMS  420 (944)
T ss_pred             eEEEeEEecc-----EEeHHHh-----------ccccCCEEEEeCCCCCCCcCCCCCCcCcCcEE
Confidence            8887765543     3444332           245799999999994 8999999975 44544

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.8e-36  Score=312.60  Aligned_cols=192  Identities=19%  Similarity=0.210  Sum_probs=135.8

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA  103 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~  103 (441)
                      +-|+.++++|+ |.+|+++++++||||++||||||+  +||.+|.++.. ..|+.|..+||++.|++++   .++. +..
T Consensus        61 ~~~~~~~~~~~-~~~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~---~~~~-~~~  134 (464)
T PRK12831         61 PGFISKLKEGD-FEEAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIK-GEPVAIGKLERFVADWARE---NGID-LSE  134 (464)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCC-CCCeehhHHHHHHHHHHHH---cCCC-CCC
Confidence            35999999999 999999999999999999999998  89999999965 4577888999999997766   3332 223


Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEE
Q 013561          104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYF  182 (441)
Q Consensus       104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~  182 (441)
                      +.+.++++|+||||||||+++|..|++.|++|+|||+.+.++  +++   .+|.+.++.-.. .+....+.+. ..++.+
T Consensus       135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G--G~l---~~gip~~~l~~~~~~~~~~~~~~-~~gv~i  208 (464)
T PRK12831        135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG--GVL---VYGIPEFRLPKETVVKKEIENIK-KLGVKI  208 (464)
T ss_pred             CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC--Cee---eecCCCccCCccHHHHHHHHHHH-HcCCEE
Confidence            344568899999999999999999999999999999987654  222   112222110001 1111112122 246777


Q ss_pred             EEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCCCCcc-cccccc
Q 013561          183 YLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGIKGVK-ENAYFL  244 (441)
Q Consensus       183 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~ipG~~-~~~~~l  244 (441)
                      ..+..++     +.+.+.+.          ...+.||+||||||+ .|+.+++||.+ +++++.
T Consensus       209 ~~~~~v~-----~~v~~~~~----------~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~  257 (464)
T PRK12831        209 ETNVVVG-----KTVTIDEL----------LEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSA  257 (464)
T ss_pred             EcCCEEC-----CcCCHHHH----------HhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEH
Confidence            6665332     12222211          013579999999998 69999999975 455443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=3.4e-34  Score=288.90  Aligned_cols=269  Identities=20%  Similarity=0.254  Sum_probs=206.5

Q ss_pred             cEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          111 RVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      +|||||||+||+.+|.+|.+   .+++|||||+++++.|.++++....|....+++..+.++.   + +..+++|+.++|
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~-~~~gv~~~~~~v   76 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRL---A-RQAGARFVIAEA   76 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHH---H-HhcCCEEEEEEE
Confidence            59999999999999999964   4689999999999999998888877766555555555544   2 235788999999


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhc------
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL------  261 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~------  261 (441)
                      ++||.++++|.+.++           .+++||+||||||+.|+.|++||..++++.+++++++.+.+..+...+      
T Consensus        77 ~~id~~~~~V~~~~g-----------~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (364)
T TIGR03169        77 TGIDPDRRKVLLANR-----------PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGT  145 (364)
T ss_pred             EEEecccCEEEECCC-----------CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCC
Confidence            999999998887653           368999999999999999999998788888999998887554443221      


Q ss_pred             ---ccccCCCCceeEeeCc-----------eEEEEc------cCCccc--------------------------------
Q 013561          262 ---MLSENPGDTVQLFSKY-----------FVITIT------LSFLVR--------------------------------  289 (441)
Q Consensus       262 ---~~a~~~G~~~vE~a~~-----------v~V~il------~~~~~~--------------------------------  289 (441)
                         .+.+ +|..++|+|..           .+|+++      +.+++.                                
T Consensus       146 ~~vvVvG-~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~  224 (364)
T TIGR03169       146 KRLAVVG-GGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALIL  224 (364)
T ss_pred             ceEEEEC-CCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCeEEe
Confidence               1222 45555555410           122211      000000                                


Q ss_pred             --------------------------------CCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHH
Q 013561          290 --------------------------------LSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGK  337 (441)
Q Consensus       290 --------------------------------lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~  337 (441)
                                                      -|+|.||+++|++++|+|||+|||+.+.+    .+.|++++.|++||+
T Consensus       225 ~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~----~~~~~~~~~A~~~g~  300 (364)
T TIGR03169       225 ADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD----APRPKAGVYAVRQAP  300 (364)
T ss_pred             CCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC----CCCCCchHHHHHhHH
Confidence                                            07899999999889999999999997643    135778999999999


Q ss_pred             HHHHHHHHHhccccCCCcccccCCCCCCCceee-cceeEEEecCCceeeecccccCCCCeEEccHHHHHHHHHHHHhhcC
Q 013561          338 YLAELFNKKIGEQDGGKALSAKDINLGDPFVYK-HLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVL  416 (441)
Q Consensus       338 ~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~-~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~  416 (441)
                      ++|+||.+.|.    |+       ++ ++|++. ..++++++|++.||++.      .++.+.|+++|++|+.+...++.
T Consensus       301 ~~a~ni~~~l~----g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~~~~~~~k~~~~~~~~~  362 (364)
T TIGR03169       301 ILAANLRASLR----GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPGRWLWRLKDWIDRRFMR  362 (364)
T ss_pred             HHHHHHHHHhc----CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecCccHHHHHHHHhHHHHh
Confidence            99999999986    65       33 788864 56899999999999876      46899999999999988777664


Q ss_pred             C
Q 013561          417 S  417 (441)
Q Consensus       417 ~  417 (441)
                      .
T Consensus       363 ~  363 (364)
T TIGR03169       363 R  363 (364)
T ss_pred             c
Confidence            3

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=6.7e-36  Score=309.03  Aligned_cols=191  Identities=15%  Similarity=0.118  Sum_probs=133.9

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCc---CCCcccCccchhhhhcccccccccCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIK---TTPHYQYHNAERIVEESESEYQELSYPG  100 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~---~~~~~~~~~~e~~i~~~~~~~~~~~~~~  100 (441)
                      .-|+.++.+|+ |.+|++.+.++||||++||||||+  +||.+|.++.+   ...++.|+.+++++.|+..+   .++..
T Consensus        49 ~~~~~~~~~g~-~~~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~---~~~~~  124 (449)
T TIGR01316        49 PEFIAKIQEGD-FKGAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQ---HGIET  124 (449)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHh---cCCCc
Confidence            45999999999 999999999999999999999999  89999998751   34567888999999997654   23322


Q ss_pred             CCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCE
Q 013561          101 LEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNS  180 (441)
Q Consensus       101 ~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v  180 (441)
                      .+.+.+.++++|+||||||||+++|..|++.|++|+|||+.+..+. .+.+++.......+ +   +....+.+. ..++
T Consensus       125 ~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG-~l~~gip~~~~~~~-~---~~~~~~~l~-~~gv  198 (449)
T TIGR01316       125 EPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG-VVTYGIPEFRLPKE-I---VVTEIKTLK-KLGV  198 (449)
T ss_pred             CCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc-EeeecCCCccCCHH-H---HHHHHHHHH-hCCc
Confidence            2223445678999999999999999999999999999999876541 11111111111111 1   111111122 3477


Q ss_pred             EEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCCCCcc-ccccc
Q 013561          181 YFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGIKGVK-ENAYF  243 (441)
Q Consensus       181 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~ipG~~-~~~~~  243 (441)
                      +++.+.+++     +.+.+..            ....||+||||||+ .|+.+++||.+ ++++.
T Consensus       199 ~~~~~~~v~-----~~v~~~~------------~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~  246 (449)
T TIGR01316       199 TFRMNFLVG-----KTATLEE------------LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYS  246 (449)
T ss_pred             EEEeCCccC-----CcCCHHH------------HHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEE
Confidence            787765432     2232221            13479999999998 68988999975 34443

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=3.2e-34  Score=313.81  Aligned_cols=191  Identities=18%  Similarity=0.195  Sum_probs=134.9

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      -|++++++|+ |.+|+++++++||||++||||||+  +||.+|++......+++++.+||++.|...+   ..+...+.+
T Consensus       351 ~~~~~~~~g~-~~~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~---~~~~~~~~~  426 (752)
T PRK12778        351 RFIKNIERGN-FLEAAKILKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERE---SGNISVPEV  426 (752)
T ss_pred             HHHHHHHCCC-HHHHHHHHHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHH---hCCCCCCCC
Confidence            4999999999 999999999999999999999997  8999999986441567888999999986543   222222222


Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .+.++++|+||||||||++||..|++.|++|||||+.+.++  +++   .+|.++++.-...+.+..+.+. ..+++|..
T Consensus       427 ~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G--G~l---~~gip~~rlp~~~~~~~~~~l~-~~gv~~~~  500 (752)
T PRK12778        427 AEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG--GVL---KYGIPEFRLPKKIVDVEIENLK-KLGVKFET  500 (752)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC--Cee---eecCCCCCCCHHHHHHHHHHHH-HCCCEEEC
Confidence            34568899999999999999999999999999999977554  222   1233332211111222222222 34778876


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCCCCcc-ccccc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGIKGVK-ENAYF  243 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~ipG~~-~~~~~  243 (441)
                      +..++     +.+++++.           ....||+||||||+ .|+.+++||.+ +++++
T Consensus       501 ~~~v~-----~~v~~~~l-----------~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~  545 (752)
T PRK12778        501 DVIVG-----KTITIEEL-----------EEEGFKGIFIASGAGLPNFMNIPGENSNGVMS  545 (752)
T ss_pred             CCEEC-----CcCCHHHH-----------hhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEE
Confidence            64432     22332221           24579999999998 59999999975 34443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=2.8e-34  Score=313.23  Aligned_cols=189  Identities=14%  Similarity=0.116  Sum_probs=133.3

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK  105 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~  105 (441)
                      +-|++++.+|+ |.+|++++.++||||.+||||||++||.+|.++.. ..+++|..++|++.+++++.....+..  +..
T Consensus       460 p~yi~li~~g~-~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~--~~~  535 (1019)
T PRK09853        460 PEYIRLVGEGR-YAEALELIYQRNALPAITGHICDHQCQYNCTRLDY-DEAVNIRELKKVALEKGWDEYKQRWHK--PAG  535 (1019)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCCC-CCCeeccHHHHHHHhhHHHhcccccCC--CCc
Confidence            45899999999 99999999999999999999999999999999965 557889999999999765532222211  112


Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +.++++|+||||||||+++|..|++.|++|||||+.+.++  +++.   .+.+.++.-...+.+..+.+. ..++++..+
T Consensus       536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G--G~lr---~~IP~~Rlp~evL~~die~l~-~~GVe~~~g  609 (1019)
T PRK09853        536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG--GVVK---NIIPQFRIPAELIQHDIEFVK-AHGVKFEFG  609 (1019)
T ss_pred             cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC--ccee---eecccccccHHHHHHHHHHHH-HcCCEEEeC
Confidence            3568899999999999999999999999999999988765  2221   112222111111222222222 246788776


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcccccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVKENAY  242 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~~~~~  242 (441)
                      ..+.++.       ...           ....||+||||||+. ++.+++||.+++++
T Consensus       610 t~Vdi~l-------e~L-----------~~~gYDaVILATGA~~~~~l~IpG~~~gV~  649 (1019)
T PRK09853        610 CSPDLTV-------EQL-----------KNEGYDYVVVAIGADKNGGLKLEGGNQNVI  649 (1019)
T ss_pred             ceeEEEh-------hhh-----------eeccCCEEEECcCCCCCCCCCCCCccCCce
Confidence            4332222       111           245699999999997 45567888755544

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=3.6e-34  Score=319.04  Aligned_cols=190  Identities=16%  Similarity=0.126  Sum_probs=136.8

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA  103 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~  103 (441)
                      .-||+++++|+ |.+|+++++++||||++||||||+  +||.+|+++.. ..|+.|+.+||++.|++++   .++..+  
T Consensus       352 p~~~~~i~~g~-~~~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~---~~~~~~--  424 (1006)
T PRK12775        352 PVFIRHVVVRD-FDGALEVIYEASIFPSICGRVCPQETQCEAQCIIAKK-HESVGIGRLERFVGDNARA---KPVKPP--  424 (1006)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCC-CCCeeecHHHHHHHHHHHH---cCCCCC--
Confidence            35999999999 999999999999999999999998  89999999965 4578899999999997765   333221  


Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      +.+.++++|+|||||||||++|.+|++.|++|||||+.+..+  +++   ..|.+.+..-...+.+..+.+. ..+++|.
T Consensus       425 ~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G--G~l---~~gip~~rl~~e~~~~~~~~l~-~~Gv~~~  498 (1006)
T PRK12775        425 RFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG--GVL---QYGIPSFRLPRDIIDREVQRLV-DIGVKIE  498 (1006)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc--cee---eccCCccCCCHHHHHHHHHHHH-HCCCEEE
Confidence            223357899999999999999999999999999999988664  222   1233332211112222222233 3478887


Q ss_pred             EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-ccccc
Q 013561          184 LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAYF  243 (441)
Q Consensus       184 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~~  243 (441)
                      .+.+++.+     +++....          ....||+||||||+. |+.+++||.+ ++++.
T Consensus       499 ~~~~vg~~-----~~~~~l~----------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~  545 (1006)
T PRK12775        499 TNKVIGKT-----FTVPQLM----------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYS  545 (1006)
T ss_pred             eCCccCCc-----cCHHHHh----------hccCCCEEEEecCCCCCCCCCCCCcCCCCcEE
Confidence            77554322     2222210          024699999999995 8999999974 44443

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=6.8e-34  Score=295.90  Aligned_cols=189  Identities=15%  Similarity=0.182  Sum_probs=134.1

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK  105 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~  105 (441)
                      .-|+.++.+|+ |.+|++++.++||||.+||||||++||.+|.++.. ..++.|..++|++.|+...   ..+..+..+.
T Consensus        65 ~~~~~~~~~~~-~~~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~---~~~~~~~~~~  139 (471)
T PRK12810         65 PEWNDLVYRGR-WEEAAERLHQTNNFPEFTGRVCPAPCEGACTLNIN-FGPVTIKNIERYIIDKAFE---EGWVKPDPPV  139 (471)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCChhHHhcCcCCchhHHhccCCCC-CCCccHHHHHHHHHHHHHH---cCCCCCCCCc
Confidence            45899999999 99999999999999999999999999999999964 5578899999999996654   3331222233


Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +..+++|+||||||||+++|..|++.|++|+|||+.++++  +.+   ..|.+.+..-...+....+.+. ..++.++.+
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G--G~l---~~gip~~~~~~~~~~~~~~~~~-~~gv~~~~~  213 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG--GLL---RYGIPDFKLEKEVIDRRIELME-AEGIEFRTN  213 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC--cee---eecCCcccCCHHHHHHHHHHHH-hCCcEEEeC
Confidence            4457899999999999999999999999999999988764  221   1222222111111222222223 346777766


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-cccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAY  242 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~  242 (441)
                      ..+..+...     .            .....||+||+|||+. ++.+++||.+ .+++
T Consensus       214 ~~v~~~~~~-----~------------~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~  255 (471)
T PRK12810        214 VEVGKDITA-----E------------ELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH  255 (471)
T ss_pred             CEECCcCCH-----H------------HHHhhCCEEEEecCCCCCCcCCCCCccCCCcE
Confidence            554332111     0            1135799999999997 7788899864 3443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=1.9e-33  Score=303.38  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=129.5

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      -||+++++|+ |.+|+++|++|||||++||||||+  +||.+|+++.. ..++.|+.+|||+.|++++.   ++....++
T Consensus       248 ~~~~~~~~g~-~~~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~---~~~~~~~~  322 (654)
T PRK12769        248 QWIELVKAGN-IDAAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDE-YGAVTIGNIERYISDQALAK---GWRPDLSQ  322 (654)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHhCCchhHhcccCCCCCChHHhccCCCC-CCCeecCHHHHHHHHHHHHh---CCCCCCcc
Confidence            4999999999 999999999999999999999996  79999999965 45789999999999987763   33221112


Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .+.++++|+|||||||||++|..|++.|++|+|||+.+.++  +++   ..|.+.++.-...+.+..+.+. ..+++|..
T Consensus       323 ~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G--G~l---~~gip~~~l~~~~~~~~~~~~~-~~Gv~~~~  396 (654)
T PRK12769        323 VTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG--GLL---TFGIPAFKLDKSLLARRREIFS-AMGIEFEL  396 (654)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--cee---eecCCCccCCHHHHHHHHHHHH-HCCeEEEC
Confidence            23457899999999999999999999999999999988664  222   1233322211111222222222 34677765


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      +..++.+     +.+..            ....||+||+|||+. +..+++||.+
T Consensus       397 ~~~v~~~-----i~~~~------------~~~~~DavilAtGa~~~~~l~i~g~~  434 (654)
T PRK12769        397 NCEVGKD-----ISLES------------LLEDYDAVFVGVGTYRSMKAGLPNED  434 (654)
T ss_pred             CCEeCCc-----CCHHH------------HHhcCCEEEEeCCCCCCCCCCCCCCC
Confidence            5432211     11111            134799999999986 4566788764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=2.2e-33  Score=307.70  Aligned_cols=186  Identities=12%  Similarity=0.071  Sum_probs=128.5

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK  105 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~  105 (441)
                      .-|++++.+|+ |.+|+++++++||||.+||||||++||.+|.++.. ..+++|..++|++.|++++.....+..+  ..
T Consensus       458 p~yi~~i~~g~-~~~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~--~~  533 (1012)
T TIGR03315       458 PEYIRLVGEKR-YLEALEVIYDKNPLPAITGTICDHQCQYKCTRLDY-DESVNIREMKKVAAEKGYDEYKTRWHKP--QG  533 (1012)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCChhhHhhCcCCcchHHHhcCCCC-CCCCcccHHHHHHHhhHHHhcCccCCCC--CC
Confidence            34899999999 99999999999999999999999999999999864 5578899999999997655322122211  12


Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      ..++++|+|||||||||+||..|++.|++|||||+++..+  +++.   .+.+.+..-...+....+.+. ..++++..+
T Consensus       534 ~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG--G~l~---~~IP~~rlp~e~l~~~ie~l~-~~GVe~~~g  607 (1012)
T TIGR03315       534 KSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG--GVVK---NIIPEFRISAESIQKDIELVK-FHGVEFKYG  607 (1012)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC--ceee---ecccccCCCHHHHHHHHHHHH-hcCcEEEEe
Confidence            2457899999999999999999999999999999998764  2221   111121110111222212122 246777665


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVKE  239 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~~  239 (441)
                      ...       .+.+...           ....||+||||||+. +..+++||..+
T Consensus       608 ~~~-------d~~ve~l-----------~~~gYDaVIIATGA~~~~~l~I~G~~~  644 (1012)
T TIGR03315       608 CSP-------DLTVAEL-----------KNQGYKYVILAIGAWKHGPLRLEGGGE  644 (1012)
T ss_pred             ccc-------ceEhhhh-----------hcccccEEEECCCCCCCCCCCcCCCCc
Confidence            211       1122211           245799999999997 45557887543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=5e-33  Score=284.16  Aligned_cols=184  Identities=17%  Similarity=0.166  Sum_probs=144.7

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      .||++|++|+ |.+|+++|++||+||++||||||++  ||++|++++. ..+++|+.+++++.|.+++   ++|.....+
T Consensus        44 ~~~~lv~~g~-~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~-~~~v~i~~le~~i~d~~~~---~g~i~~~~~  118 (457)
T COG0493          44 EPIGLVREGV-DHEAIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIE-ELPVNIGALERAIGDKADR---EGWIPGELP  118 (457)
T ss_pred             CHHHHHhcCC-cHHHHHHHHHhCCCccccCccCCCCCceeeeeeeccC-CCchhhhhHHHHHhhHHHH---hCCCCCCCC
Confidence            4889999999 9999999999999999999999998  9999999864 5578999999999998887   666555555


Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      ...+.++|+||||||||+++|..|++.||+||++|+.+..+  +++   .+|+++++.-...+++..+.+.+ .+++|..
T Consensus       119 ~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G--Gll---~yGIP~~kl~k~i~d~~i~~l~~-~Gv~~~~  192 (457)
T COG0493         119 GSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG--GLL---LYGIPDFKLPKDILDRRLELLER-SGVEFKL  192 (457)
T ss_pred             CCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc--eeE---EecCchhhccchHHHHHHHHHHH-cCeEEEE
Confidence            56778999999999999999999999999999999999876  332   34555554333334444443443 4588887


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      +..++.+.+.+.+                 ..+||++++|+|+. |+..++||.+
T Consensus       193 ~~~vG~~it~~~L-----------------~~e~Dav~l~~G~~~~~~l~i~g~d  230 (457)
T COG0493         193 NVRVGRDITLEEL-----------------LKEYDAVFLATGAGKPRPLDIPGED  230 (457)
T ss_pred             cceECCcCCHHHH-----------------HHhhCEEEEeccccCCCCCCCCCcC
Confidence            7665544332222                 34689999999975 8888999984

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.97  E-value=3.8e-32  Score=281.97  Aligned_cols=183  Identities=20%  Similarity=0.242  Sum_probs=127.6

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      -|+.++++|+ |.+|++++.++||||++||||||++  ||..|.++.... ++.+..+++++.++++.   ..+.. +.+
T Consensus        62 ~~~~~~~~~~-~~~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~-~v~i~~l~~~~~~~~~~---~~~~~-~~~  135 (457)
T PRK11749         62 EFIRLIAEGN-LKGAAETILETNPLPAVCGRVCPQERLCEGACVRGKKGE-PVAIGRLERYITDWAME---TGWVL-FKR  135 (457)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCCCCC-CcchHHHHHHHHHHHHh---cCCCC-CCC
Confidence            4999999999 9999999999999999999999998  999999875433 55777899998886654   22211 112


Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .+.++++|+||||||||+++|..|++.|++|+|||+.+.++  +++   ..+.+.+......+......+. ..++.+..
T Consensus       136 ~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g--G~l---~~gip~~~~~~~~~~~~~~~l~-~~gv~~~~  209 (457)
T PRK11749        136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG--GLL---RYGIPEFRLPKDIVDREVERLL-KLGVEIRT  209 (457)
T ss_pred             CccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC--cEe---eccCCCccCCHHHHHHHHHHHH-HcCCEEEe
Confidence            23457899999999999999999999999999999998664  221   1122221110111122222233 24677766


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      +..++     +.+.+..            ..+.||+||||||+. |+.+++||.+
T Consensus       210 ~~~v~-----~~v~~~~------------~~~~~d~vvlAtGa~~~~~~~i~G~~  247 (457)
T PRK11749        210 NTEVG-----RDITLDE------------LRAGYDAVFIGTGAGLPRFLGIPGEN  247 (457)
T ss_pred             CCEEC-----CccCHHH------------HHhhCCEEEEccCCCCCCCCCCCCcc
Confidence            65431     1222211            136799999999985 7777888864

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=4e-32  Score=291.97  Aligned_cols=184  Identities=14%  Similarity=0.105  Sum_probs=132.3

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      -||+++++|+ |.+|+++++++||||++||||||+  +||.+|+++.. ..++.|+.+|||+.|++++   ++|....++
T Consensus       231 ~~~~~~~~g~-~~~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~---~~~~~~~~~  305 (639)
T PRK12809        231 DYIRLVQEGK-IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDH-SGAVSIGNLERYITDTALA---MGWRPDVSK  305 (639)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHhCCcchhhcccCCCCCChHHhccCCCc-CCCcChhHHHHHHHHHHHH---hCCCCCCCc
Confidence            4999999999 999999999999999999999996  79999999965 4578899999999998876   444333223


Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .+.++++|+||||||+||++|..|++.|++|||||+.+.++  +++   .+|.+.++.-...+....+.+. ..++++..
T Consensus       306 ~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G--G~l---~~gip~~~l~~~~~~~~~~~~~-~~Gv~~~~  379 (639)
T PRK12809        306 VVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG--GML---TFGIPPFKLDKTVLSQRREIFT-AMGIDFHL  379 (639)
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC--Cee---eccCCcccCCHHHHHHHHHHHH-HCCeEEEc
Confidence            33458999999999999999999999999999999998764  332   2233333211111221222222 35777765


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      +...+.     .+.+..            ....||+||+|||+. +..+++||.+
T Consensus       380 ~~~v~~-----~~~~~~------------l~~~~DaV~latGa~~~~~~~i~g~~  417 (639)
T PRK12809        380 NCEIGR-----DITFSD------------LTSEYDAVFIGVGTYGMMRADLPHED  417 (639)
T ss_pred             CCccCC-----cCCHHH------------HHhcCCEEEEeCCCCCCCCCCCCCCc
Confidence            543221     111111            135799999999987 4566788865

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.97  E-value=3e-32  Score=293.21  Aligned_cols=185  Identities=15%  Similarity=0.152  Sum_probs=127.4

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK  105 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~  105 (441)
                      +-|+.++.+|+ |.+|+++++++||||.+||||||++||..|.+... ..++.+..+++++.+++.+.   .+...+.+.
T Consensus       115 ~~~~~~~~~g~-~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~~---~~~~~~~~~  189 (652)
T PRK12814        115 PGFIAAIARGD-DREAIRIIKETIPLPGILGRICPAPCEEACRRHGV-DEPVSICALKRYAADRDMES---AERYIPERA  189 (652)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHhhCCccceeeCCcCchhhHHHcCCCC-CCCcchhHHHHHHHHHHHhc---CcccCCCCC
Confidence            45899999999 99999999999999999999999999999999854 44667888999998865432   111111223


Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +.++++|+|||+||||+++|..|++.|++|||||+.++++  +++   ..|.+.+......+....+.+. ..++.+..+
T Consensus       190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G--G~l---~~gip~~~~~~~~~~~~~~~l~-~~Gv~i~~~  263 (652)
T PRK12814        190 PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG--GMM---RYGIPRFRLPESVIDADIAPLR-AMGAEFRFN  263 (652)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC--cee---eecCCCCCCCHHHHHHHHHHHH-HcCCEEEeC
Confidence            3457899999999999999999999999999999998764  222   1122221110011111111122 246666655


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK  238 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~  238 (441)
                      .+.+++     +.+..            ....||+||||||+.+ ..+++||.+
T Consensus       264 ~~v~~d-----v~~~~------------~~~~~DaVilAtGa~~~~~~~ipG~~  300 (652)
T PRK12814        264 TVFGRD-----ITLEE------------LQKEFDAVLLAVGAQKASKMGIPGEE  300 (652)
T ss_pred             CcccCc-----cCHHH------------HHhhcCEEEEEcCCCCCCCCCCCCcC
Confidence            543332     11111            1235999999999975 567888864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.97  E-value=2.3e-32  Score=284.90  Aligned_cols=189  Identities=16%  Similarity=0.187  Sum_probs=133.6

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK  105 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~  105 (441)
                      .-|+.++.+|+ |.+|++++.++|+||.+||||||++||..|.++.. ..++.|..+||++.++..+   ..+..+..+.
T Consensus        65 ~~~~~~~~~g~-~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~---~~~~~~~~~~  139 (485)
T TIGR01317        65 PEFNDLVFRGR-WKEALDRLHATNNFPEFTGRVCPAPCEGACTLGIS-EDPVGIKSIERIIIDKGFQ---EGWVQPRPPS  139 (485)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHhhCCchhHHhCcCChhhHHhccCCCC-CCCcchhHHHHHHHHHHHH---cCCCCCCCCc
Confidence            45899999999 99999999999999999999999999999999964 4567888999999886654   3343332223


Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +..+++|+|||+|++|+++|..|++.|++|+|||+.++++  +++   .+|.+.+..-...+....+.+. ..++.++.+
T Consensus       140 ~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g--G~l---~~gip~~~~~~~~~~~~~~~~~-~~Gv~~~~~  213 (485)
T TIGR01317       140 KRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG--GLL---MYGIPNMKLDKAIVDRRIDLLS-AEGIDFVTN  213 (485)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC--cee---eccCCCccCCHHHHHHHHHHHH-hCCCEEECC
Confidence            3446899999999999999999999999999999998654  222   1122221100011222222222 347777666


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc-cccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK-ENAY  242 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~-~~~~  242 (441)
                      ..+..+...+                 .....||+||+|||+. |..+++||.+ ++++
T Consensus       214 ~~v~~~~~~~-----------------~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~  255 (485)
T TIGR01317       214 TEIGVDISAD-----------------ELKEQFDAVVLAGGATKPRDLPIPGRELKGIH  255 (485)
T ss_pred             CEeCCccCHH-----------------HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcE
Confidence            4433221110                 1245799999999998 8888999875 3444

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.97  E-value=1e-31  Score=278.85  Aligned_cols=185  Identities=14%  Similarity=0.143  Sum_probs=128.8

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA  103 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~  103 (441)
                      .-|+.++++|+ |.+|++++.++||||.+||||||+  +||.+|.++.. ..|+.|+.+||++.|++.+   .++.....
T Consensus        61 ~~~~~~~~~g~-~~~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~---~~~~~~~~  135 (467)
T TIGR01318        61 PQWLQLVQEGR-IDEAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDE-FGAVTIGNLERYITDTALA---MGWRPDLS  135 (467)
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCC-CCCccHHHHHHHHHHHHHH---hCCCCCCC
Confidence            35999999999 999999999999999999999995  89999999854 4578889999999997654   33333222


Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      +.+.++++|+|||+||+|+++|..|++.|++|+|||+.+.++  +++   ..|.+.+..-...+....+.+. ..++.+.
T Consensus       136 ~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g--G~l---~~gip~~~~~~~~~~~~~~~~~-~~Gv~~~  209 (467)
T TIGR01318       136 HVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG--GLL---TFGIPSFKLDKAVLSRRREIFT-AMGIEFH  209 (467)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC--cee---eecCccccCCHHHHHHHHHHHH-HCCCEEE
Confidence            233457899999999999999999999999999999998664  222   1233322111111122222222 3466665


Q ss_pred             EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561          184 LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK  238 (441)
Q Consensus       184 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~  238 (441)
                      .+..+.     +.+.+..            ....||+||+|||+.+ ..+++||.+
T Consensus       210 ~~~~v~-----~~~~~~~------------~~~~~D~vilAtGa~~~~~~~i~g~~  248 (467)
T TIGR01318       210 LNCEVG-----RDISLDD------------LLEDYDAVFLGVGTYRSMRGGLPGED  248 (467)
T ss_pred             CCCEeC-----CccCHHH------------HHhcCCEEEEEeCCCCCCcCCCCCcC
Confidence            543221     1111111            1347999999999986 456788864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.97  E-value=2.6e-31  Score=284.79  Aligned_cols=184  Identities=14%  Similarity=0.152  Sum_probs=127.3

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCC-CCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPG-LEATK  105 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~-~~~~~  105 (441)
                      -|++++++++ |.+|++.+.++|+||++||||||++||.+|+++... .++.|..+||++.+...+   ..+.. ...+.
T Consensus       205 ~~~~~i~~~~-~~~a~~~~~~~np~~~~~g~vC~~~Ce~~C~~~~~~-~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~  279 (604)
T PRK13984        205 QYIKAIYKDD-LEEGLRWLYKTNPLSMVCGRVCTHKCETVCSIGHRG-EPIAIRWLKRYIVDNVPV---EKYSEILDDEP  279 (604)
T ss_pred             HHHHHHHcCC-HHHHHHHHHhcCCccchhhCcCCchHHHhhcccCCC-CCeEeCcHHHHHHhHHHH---cCcccccCCCc
Confidence            3889999999 999999999999999999999999999999999654 466777899999986543   22211 11223


Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      ..++++|+|||+|+||+++|..|++.|++|+|||+.+..+  +.+   ..+...+......+....+.+. ..++.++.+
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g--G~~---~~~i~~~~~~~~~~~~~~~~~~-~~gv~~~~~  353 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG--GVM---RYGIPSYRLPDEALDKDIAFIE-ALGVKIHLN  353 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--ceE---eecCCcccCCHHHHHHHHHHHH-HCCcEEECC
Confidence            3457899999999999999999999999999999988664  111   1122221100111111112223 346776655


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      ..+..+     +..+.            ...+||+||||||+. |+.+++||.+
T Consensus       354 ~~v~~~-----~~~~~------------~~~~yD~vilAtGa~~~r~l~i~G~~  390 (604)
T PRK13984        354 TRVGKD-----IPLEE------------LREKHDAVFLSTGFTLGRSTRIPGTD  390 (604)
T ss_pred             CEeCCc-----CCHHH------------HHhcCCEEEEEcCcCCCccCCCCCcC
Confidence            433221     11111            245799999999987 6778899974

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.96  E-value=9e-30  Score=270.61  Aligned_cols=113  Identities=11%  Similarity=0.074  Sum_probs=97.0

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKP  106 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~  106 (441)
                      -|+.++++|+ |.+|+++++++||||.+||||||++||..|.++.. +.++.+..++|++.|++.+   .++..+ .+..
T Consensus        61 ~~~~~~~~g~-~~~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~---~~~~~~-~~~~  134 (564)
T PRK12771         61 GWLALVRGGD-YEYAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQV-DDAVGINAVERFLGDYAIA---NGWKFP-APAP  134 (564)
T ss_pred             HHHHHHHCCC-HHHHHHHHHHhCCcchHhhCcCCchhHHhccCCCC-CCCcCHHHHHHHHHHHHHH---cCCCCC-CCCC
Confidence            4999999999 99999999999999999999999999999999854 5677888899999886654   333222 2234


Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+++|+|||+||+||++|..|++.|++|+|||+.+.++
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            558899999999999999999999999999999998765

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.93  E-value=3.7e-25  Score=225.73  Aligned_cols=242  Identities=17%  Similarity=0.186  Sum_probs=161.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcccc-cch-hhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMVFT-PLL-ASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~~~-~ll-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++|||||||+||++||..|++.|+  +||||++++++.|. +.+ .....+... +..  .+... + +....++.++.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~-~~~--~~~~~-~-~~~~~~i~~~~   77 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSP-QLQ--QVLPA-N-WWQENNVHLHS   77 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCc-ccc--ccCCH-H-HHHHCCCEEEc
Confidence            5689999999999999999998776  79999999888774 333 223332211 111  11111 1 12235788876


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCc-ccccccccCHhHHHHHHHHHHH--h
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLREVNHAQEIRKKLLL--N  260 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~-~~~~~~l~~~~~a~~~~~~i~~--~  260 (441)
                      + .|..+|.+.+.+.+.++           .++.||+||||||++|+.+++++. .++++.+++.+++.++++.+..  .
T Consensus        78 g~~V~~id~~~~~v~~~~g-----------~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~  146 (396)
T PRK09754         78 GVTIKTLGRDTRELVLTNG-----------ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERS  146 (396)
T ss_pred             CCEEEEEECCCCEEEECCC-----------CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence            6 68999999888877542           379999999999999988777664 3678889999999888876532  1


Q ss_pred             cccccCCCCceeEeeC-----ceEEE------------------------------------------------------
Q 013561          261 LMLSENPGDTVQLFSK-----YFVIT------------------------------------------------------  281 (441)
Q Consensus       261 ~~~a~~~G~~~vE~a~-----~v~V~------------------------------------------------------  281 (441)
                      +.+.+ +|..|+|+|.     +.+|+                                                      
T Consensus       147 vvViG-gG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g  225 (396)
T PRK09754        147 VVIVG-AGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG  225 (396)
T ss_pred             EEEEC-CCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCC
Confidence            22223 3455544431     01111                                                      


Q ss_pred             -------EccC--------------CcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHH
Q 013561          282 -------ITLS--------------FLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA  340 (441)
Q Consensus       282 -------il~~--------------~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA  340 (441)
                             ++-.              +..+ ++|.||+++|| +.|+|||+|||+.++++.|....+++++.|++||++||
T Consensus       226 ~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa  303 (396)
T PRK09754        226 ETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAA  303 (396)
T ss_pred             CEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHH
Confidence                   0000              0000 67999999999 99999999999987655454445678999999999999


Q ss_pred             HHHHHHhccccCCCcccccCCCCCCCceeecc-e-eEEEecCC
Q 013561          341 ELFNKKIGEQDGGKALSAKDINLGDPFVYKHL-G-SMATVGRY  381 (441)
Q Consensus       341 ~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~-g-~~~~lG~~  381 (441)
                      +||..        ..   ..++. .||.+.+. + .+.++|..
T Consensus       304 ~ni~g--------~~---~~~~~-~p~~~~~~~~~~~~~~G~~  334 (396)
T PRK09754        304 AAMLG--------LP---LPLLP-PPWFWSDQYSDNLQFIGDM  334 (396)
T ss_pred             HHhcC--------CC---CCCCC-CCceEEEeCCccEEEeeCC
Confidence            99972        21   01232 66766643 3 46777743

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.93  E-value=1.3e-24  Score=224.49  Aligned_cols=223  Identities=19%  Similarity=0.250  Sum_probs=152.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCccccc-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEE-EE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTP-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY-LA  185 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~  185 (441)
                      +||||||||+||+++|..|++.  +++|||||+++++.|.+ .++....+.........++..  +.+.+..++.+. .+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~~~~   79 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTP--EKFYDRKQITVKTYH   79 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCH--HHHHHhCCCEEEeCC
Confidence            4899999999999999999865  68999999999988875 455555443322211111111  113333467765 47


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH----hc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL----NL  261 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~----~~  261 (441)
                      +|++||.+++.|.+.+..++      +..+++||+||||||+.|+.|++++  ++++.++++.++..+++.+..    .+
T Consensus        80 ~V~~Id~~~~~v~~~~~~~~------~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~v  151 (438)
T PRK13512         80 EVIAINDERQTVTVLNRKTN------EQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKANQVDKA  151 (438)
T ss_pred             EEEEEECCCCEEEEEECCCC------cEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence            99999999999998874221      2235799999999999998877654  567778889998887766532    22


Q ss_pred             ccccCCCCceeEeeC-----ceEEEE-------ccCCc------------------------------------------
Q 013561          262 MLSENPGDTVQLFSK-----YFVITI-------TLSFL------------------------------------------  287 (441)
Q Consensus       262 ~~a~~~G~~~vE~a~-----~v~V~i-------l~~~~------------------------------------------  287 (441)
                      .+.+ +|..|+|+|.     +.+|++       ++.++                                          
T Consensus       152 vViG-gG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~  230 (438)
T PRK13512        152 LVVG-AGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHY  230 (438)
T ss_pred             EEEC-CCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEe
Confidence            2333 5666666651     111110       00000                                          


Q ss_pred             --------------------cc---CCceeeCCCcccCCCCCEEEecccccccc-cCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          288 --------------------VR---LSQIGVDEWLRAPSVEDVFALGDCAGFLE-QTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       288 --------------------~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~-~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                                          ..   -|+|.||+++|| ++|+|||+|||+.... ..+.+..+++++.|.+||+++|+||
T Consensus       231 D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni  309 (438)
T PRK13512        231 DMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQI  309 (438)
T ss_pred             CEEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHh
Confidence                                00   078999999999 9999999999996422 1232335678999999999999999


Q ss_pred             H
Q 013561          344 N  344 (441)
Q Consensus       344 ~  344 (441)
                      .
T Consensus       310 ~  310 (438)
T PRK13512        310 A  310 (438)
T ss_pred             c
Confidence            6

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.92  E-value=2.5e-24  Score=222.85  Aligned_cols=223  Identities=20%  Similarity=0.287  Sum_probs=150.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccccc-hhhhhcCCCC-ccccccchhhhhhhhcCCCCEEEE-E
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTPL-LASTCVGTLE-FRSVAEPVSRIQTSLSSDPNSYFY-L  184 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~l-l~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~  184 (441)
                      +||||||||+||+++|..|++.+  ++|||||+++++.|.++ ++....+... ..+......+.   +.+ .++.++ .
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~gv~~~~~   76 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEE---FIK-SGIDVKTE   76 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHH---HHH-CCCeEEec
Confidence            37999999999999999998764  69999999998877653 3333322211 11111111111   232 467765 5


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH----
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL----  259 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~----  259 (441)
                      ++|++||.+.+.+.+.+..++      +..++.||+||||||++|+.|++||.+ ++++.++++.++.++++.+..    
T Consensus        77 ~~V~~id~~~~~v~~~~~~~~------~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  150 (444)
T PRK09564         77 HEVVKVDAKNKTITVKNLKTG------SIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIK  150 (444)
T ss_pred             CEEEEEECCCCEEEEEECCCC------CEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCC
Confidence            689999999999988763211      112344999999999999999999986 678888888888887766532    


Q ss_pred             hcccccCCCCceeEeeCc-----eEEE-----------------------------------------------------
Q 013561          260 NLMLSENPGDTVQLFSKY-----FVIT-----------------------------------------------------  281 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~~-----v~V~-----------------------------------------------------  281 (441)
                      .+.+.+ +|..|+|+|..     .+|+                                                     
T Consensus       151 ~vvVvG-gG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~  229 (444)
T PRK09564        151 NIVIIG-AGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD  229 (444)
T ss_pred             EEEEEC-CCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC
Confidence            223333 45555444310     0111                                                     


Q ss_pred             ---------Ec-cCC----------ccc---CCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHH
Q 013561          282 ---------IT-LSF----------LVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGK  337 (441)
Q Consensus       282 ---------il-~~~----------~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~  337 (441)
                               ++ .++          +.+   -|+|.||+++|| ++|||||+|||+..++. .+++..+++++.|++||+
T Consensus       230 ~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~  308 (444)
T PRK09564        230 KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR  308 (444)
T ss_pred             CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHH
Confidence                     00 000          000   078999999999 99999999999987542 233345789999999999


Q ss_pred             HHHHHHH
Q 013561          338 YLAELFN  344 (441)
Q Consensus       338 ~aA~nI~  344 (441)
                      ++|+||.
T Consensus       309 ~~a~ni~  315 (444)
T PRK09564        309 MVGENLA  315 (444)
T ss_pred             HHHHHhc
Confidence            9999997

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.92  E-value=6.3e-26  Score=244.97  Aligned_cols=190  Identities=13%  Similarity=0.116  Sum_probs=129.4

Q ss_pred             cccCCCCCCCCCccccccccCCCcccCCC-cccccccccCcCCCCcCCCcccCccchhhhhcccccc------c--ccCC
Q 013561           28 GIEGLPTNKCFSPSLENVSRNSSLSYLPS-SIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEY------Q--ELSY   98 (441)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~g-rvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~------~--~~~~   98 (441)
                      |+....+|+ |.+|++++.++||||++|| |||| +||.+|.++ . ..|++|+.+||++.|..++.      .  ...|
T Consensus       293 ~~~~~~~g~-~~~Al~ii~~~NP~p~~~G~RVCp-~CE~aC~r~-~-dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~  368 (1028)
T PRK06567        293 MNYVKAQGF-NLSALAIIVIDNPMVAATGHRICN-DCSKACIYQ-K-QDPVNIPLIESNILEETLKLPYGLEIYLLLTRW  368 (1028)
T ss_pred             HHHHHHCCC-HHHHHHHHHHhCCChHhhCCccCc-chHHHhcCC-C-CCCeehhHHHHHHhhhhhhhccccccccccccc
Confidence            778888999 9999999999999999999 9999 799999998 3 45789999999998853211      0  0112


Q ss_pred             CC----CCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC--------------cccccchhhhh---c-C
Q 013561           99 PG----LEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH--------------MVFTPLLASTC---V-G  156 (441)
Q Consensus        99 ~~----~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~--------------~~~~~ll~~~~---~-g  156 (441)
                      ..    .+.+++.+++||+||||||||++||..|++.||+|||||+.+.              ..|.+++++..   . |
T Consensus       369 ~~~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG  448 (1028)
T PRK06567        369 NPLNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGG  448 (1028)
T ss_pred             ccccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCc
Confidence            11    1123446789999999999999999999999999999998642              12334444333   1 2


Q ss_pred             CCCcccccc-----chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcC
Q 013561          157 TLEFRSVAE-----PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPL  230 (441)
Q Consensus       157 ~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~  230 (441)
                      ...+. +..     .++.....+....++.+..+...+.+.+.+.+                ....||+|+||||+ .|+
T Consensus       449 ~~~yG-Ip~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl----------------~~~gyDAV~IATGA~kpr  511 (1028)
T PRK06567        449 VAEYG-ITVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQA----------------FDLGFDHIAFCIGAGQPK  511 (1028)
T ss_pred             ccccC-ccccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHH----------------hhcCCCEEEEeCCCCCCC
Confidence            22222 111     11111111222335666666554443322211                14579999999999 699


Q ss_pred             CCCCCCcc
Q 013561          231 TFGIKGVK  238 (441)
Q Consensus       231 ~~~ipG~~  238 (441)
                      .+++||.+
T Consensus       512 ~L~IPGed  519 (1028)
T PRK06567        512 VLDIENFE  519 (1028)
T ss_pred             CCCCCCcc
Confidence            99999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.91  E-value=2.5e-23  Score=210.94  Aligned_cols=212  Identities=21%  Similarity=0.275  Sum_probs=143.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCccc-ccchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVF-TPLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~-~~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++|||||||+||+++|..|++.  +.+||||+++++..| .+.++....+....+++.. ....    +.+..++.++.
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~gv~~~~   77 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGE----FAEQFNLRLFP   77 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHH----HHHhCCCEEEC
Confidence            46899999999999999999874  568999999987666 4556555544333332222 1222    22334677764


Q ss_pred             -EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH--hc
Q 013561          185 -ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL--NL  261 (441)
Q Consensus       185 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~--~~  261 (441)
                       .+|+++|.+.+.+.+..            .++.||+||||||+.|..|++||.+. ++.++++.++..+...+..  .+
T Consensus        78 ~~~V~~id~~~~~v~~~~------------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~~v  144 (377)
T PRK04965         78 HTWVTDIDAEAQVVKSQG------------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRDAQRV  144 (377)
T ss_pred             CCEEEEEECCCCEEEECC------------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhcCCeE
Confidence             58999999888776432            37899999999999999999999754 7778888888777665422  12


Q ss_pred             ccccCCCCceeEeeC-----ceEEE-------------------------------------------------------
Q 013561          262 MLSENPGDTVQLFSK-----YFVIT-------------------------------------------------------  281 (441)
Q Consensus       262 ~~a~~~G~~~vE~a~-----~v~V~-------------------------------------------------------  281 (441)
                      .+.+ +|..|+|+|.     ..+|+                                                       
T Consensus       145 vViG-gG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g  223 (377)
T PRK04965        145 LVVG-GGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG  223 (377)
T ss_pred             EEEC-CCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC
Confidence            2222 3444433330     01111                                                       


Q ss_pred             --------Ec-cCCccc----------C-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013561          282 --------IT-LSFLVR----------L-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE  341 (441)
Q Consensus       282 --------il-~~~~~~----------l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~  341 (441)
                              ++ .++.+.          . +.|.||++||| +.|+|||+|||+.+.   |.  ..+.++.|++||+.+|+
T Consensus       224 ~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA~GD~a~~~---~~--~~~~~~~a~~~g~~~a~  297 (377)
T PRK04965        224 RSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSYLQT-SAPDIYALGDCAEIN---GQ--VLPFLQPIQLSAMALAK  297 (377)
T ss_pred             cEEECCEEEECcCCCcchHHHHHCCCCcCCCEEECCCccc-CCCCEEEeeecEeEC---Cc--eeehHHHHHHHHHHHHH
Confidence                    00 000000          0 44999999999 999999999999764   22  23457789999999999


Q ss_pred             HHH
Q 013561          342 LFN  344 (441)
Q Consensus       342 nI~  344 (441)
                      ||.
T Consensus       298 n~~  300 (377)
T PRK04965        298 NLL  300 (377)
T ss_pred             Hhc
Confidence            997

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.91  E-value=3.2e-23  Score=227.68  Aligned_cols=213  Identities=16%  Similarity=0.217  Sum_probs=150.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCcccccc-hhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHMVFTPL-LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      ++||||||+|+||+.+|..|.+    .+++||||++++++.|.+. ++....+. ..+++.......    .+..+++++
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~----~~~~gI~~~   77 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGF----YEKHGIKVL   77 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHH----HHhCCCEEE
Confidence            4589999999999999999864    3589999999999888764 44444332 222333322222    223578888


Q ss_pred             EE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH--
Q 013561          184 LA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL--  259 (441)
Q Consensus       184 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~--  259 (441)
                      .+ .|+.||.+.+.|.+.++           .+++||+||||||+.|+.|++||.+ .+++.+++++++.+++..+..  
T Consensus        78 ~g~~V~~Id~~~~~V~~~~G-----------~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k  146 (847)
T PRK14989         78 VGERAITINRQEKVIHSSAG-----------RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSK  146 (847)
T ss_pred             cCCEEEEEeCCCcEEEECCC-----------cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCC
Confidence            76 69999998887776542           3789999999999999999999986 567888999999888766432  


Q ss_pred             hcccccCCCCceeEeeC-----ceEEE----------------------------------------Ecc----------
Q 013561          260 NLMLSENPGDTVQLFSK-----YFVIT----------------------------------------ITL----------  284 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~-----~v~V~----------------------------------------il~----------  284 (441)
                      .+.+.+ +|..|+|+|.     +.+|+                                        +..          
T Consensus       147 ~vvVIG-gG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~  225 (847)
T PRK14989        147 RGAVVG-GGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMR  225 (847)
T ss_pred             eEEEEC-CCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEE
Confidence            222333 4555555441     01111                                        000          


Q ss_pred             ----------------C----------CcccC---CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHH
Q 013561          285 ----------------S----------FLVRL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQ  335 (441)
Q Consensus       285 ----------------~----------~~~~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~q  335 (441)
                                      +          .+..+   |+|.||++||| +.|+|||+|||+...+     ....++..|.+|
T Consensus       226 ~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~-----~~~gl~~~a~~~  299 (847)
T PRK14989        226 FADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDPDIYAIGECASWNN-----RVFGLVAPGYKM  299 (847)
T ss_pred             ECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCCCEEEeecceeEcC-----cccccHHHHHHH
Confidence                            0          00000   68999999999 9999999999996632     234578899999


Q ss_pred             HHHHHHHHH
Q 013561          336 GKYLAELFN  344 (441)
Q Consensus       336 g~~aA~nI~  344 (441)
                      |+++|+||.
T Consensus       300 a~vaa~~i~  308 (847)
T PRK14989        300 AQVAVDHLL  308 (847)
T ss_pred             HHHHHHHhc
Confidence            999999997

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.90  E-value=1.1e-22  Score=223.38  Aligned_cols=211  Identities=20%  Similarity=0.312  Sum_probs=151.2

Q ss_pred             EEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCccccc-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          112 VVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTP-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       112 VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      |||||+|+||+++|..|.+   .+++||||++++++.|.. .++.+..|....+++.....+.   +. ..+++++.+ .
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~---~~-~~gv~~~~g~~   76 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDW---YE-KHGITLYTGET   76 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHH---HH-HCCCEEEcCCe
Confidence            6999999999999988765   468999999999988774 4666666655544444444443   22 357888776 7


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHh--ccc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLN--LML  263 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~--~~~  263 (441)
                      |+.||.+.+.|.+.++           .++.||+||||||+.|+.|++||.+ ++++.+++++++..+++.....  +.+
T Consensus        77 V~~Id~~~k~V~~~~g-----------~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvV  145 (785)
T TIGR02374        77 VIQIDTDQKQVITDAG-----------RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAV  145 (785)
T ss_pred             EEEEECCCCEEEECCC-----------cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEE
Confidence            9999999888877552           3789999999999999999999986 5788899999998887654321  222


Q ss_pred             ccCCCCceeEeeC-----ceEEE----------------------------------------E----------------
Q 013561          264 SENPGDTVQLFSK-----YFVIT----------------------------------------I----------------  282 (441)
Q Consensus       264 a~~~G~~~vE~a~-----~v~V~----------------------------------------i----------------  282 (441)
                      .+ +|..|+|+|.     +.+|+                                        +                
T Consensus       146 VG-gG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~  224 (785)
T TIGR02374       146 IG-GGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSS  224 (785)
T ss_pred             EC-CCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCE
Confidence            22 3555544431     00111                                        0                


Q ss_pred             ------c--cCCcc----------cC-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          283 ------T--LSFLV----------RL-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       283 ------l--~~~~~----------~l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                            +  .++.+          +. |.|.||++||| ++|+|||+|||+...+     ....++..|.+||+++|.||
T Consensus       225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~-----~~~gl~~~a~~qa~vaA~ni  298 (785)
T TIGR02374       225 LEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVGECAEHNG-----RVYGLVAPLYEQAKVLADHI  298 (785)
T ss_pred             EEcCEEEECCCCCcCcHHHHhcCCccCCCEEECCCccc-CCCCEEEeeecceeCC-----cccccHHHHHHHHHHHHHHh
Confidence                  0  00000          00 67999999999 9999999999997642     12346788999999999999


Q ss_pred             H
Q 013561          344 N  344 (441)
Q Consensus       344 ~  344 (441)
                      .
T Consensus       299 ~  299 (785)
T TIGR02374       299 C  299 (785)
T ss_pred             c
Confidence            7

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.87  E-value=5.4e-21  Score=195.66  Aligned_cols=188  Identities=20%  Similarity=0.275  Sum_probs=130.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      |++++|||||++|+++|..+++.|.+|||+|+.++++           ...++++...+.+.   +.+ .++.+..+ .+
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-----------p~~D~ei~~~~~~~---l~~-~gv~i~~~~~v  237 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-----------PGEDPEISKELTKQ---LEK-GGVKILLNTKV  237 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----------CcCCHHHHHHHHHH---HHh-CCeEEEccceE
Confidence            7899999999999999999999999999999999876           22344455555554   444 56766665 67


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ..++...+.+.+...+.       +..++.+|+|++|+|++||+.++ |+                        +     
T Consensus       238 ~~~~~~~~~v~v~~~~g-------~~~~~~ad~vLvAiGR~Pn~~~L-gL------------------------e-----  280 (454)
T COG1249         238 TAVEKKDDGVLVTLEDG-------EGGTIEADAVLVAIGRKPNTDGL-GL------------------------E-----  280 (454)
T ss_pred             EEEEecCCeEEEEEecC-------CCCEEEeeEEEEccCCccCCCCC-Ch------------------------h-----
Confidence            77766555444433211       11268899999999999987642 11                        1     


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                       ..|+|+-+.             |+|.||+.+|| ++|||||+|||+      |   .|++++.|..||++||+||.. .
T Consensus       281 -~~Gv~~~~r-------------g~I~VD~~~~T-nvp~IyA~GDV~------~---~~~Lah~A~~eg~iaa~~i~g-~  335 (454)
T COG1249         281 -NAGVELDDR-------------GFIKVDDQMTT-NVPGIYAIGDVI------G---GPMLAHVAMAEGRIAAENIAG-G  335 (454)
T ss_pred             -hcCceECCC-------------CCEEeCCcccc-CCCCEEEeeccC------C---CcccHhHHHHHHHHHHHHHhC-C
Confidence             112333221             88999966777 899999999998      2   356999999999999999984 1


Q ss_pred             ccccCCCcccccCCCCCCCceeecceeEEEecCC
Q 013561          348 GEQDGGKALSAKDINLGDPFVYKHLGSMATVGRY  381 (441)
Q Consensus       348 ~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~  381 (441)
                           ..  ...++.. -|+.--....+.++|..
T Consensus       336 -----~~--~~~d~~~-iP~~ift~Peia~VGlt  361 (454)
T COG1249         336 -----KR--TPIDYRL-IPSVVFTDPEIASVGLT  361 (454)
T ss_pred             -----CC--CcCcccC-CCEEEECCCcceeeeCC
Confidence                 11  0111222 55554444567777764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.86  E-value=1.8e-21  Score=201.57  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=74.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhhh----------------cCCC------Cccc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----ASTC----------------VGTL------EFRS  162 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~~----------------~g~~------~~~~  162 (441)
                      .+|+||||||||++||..+++.|++|+|||+. .++ +.++     |...                .|..      +...
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~G-G~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVG-GTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccC-ceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            57999999999999999999999999999985 333 1221     1110                0110      0000


Q ss_pred             ccc-------chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561          163 VAE-------PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK  235 (441)
Q Consensus       163 ~~~-------~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip  235 (441)
                      +..       .+....+...+..+++++.+++..++.+  ++.+...  +        .++.||+||||||++|+.|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~~--g--------~~~~~d~lIiATGs~p~~p~i~  148 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQD--G--------TTYTAKKILIAVGGRPQKPNLP  148 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEecC--C--------eEEEcCEEEEecCCcCCCCCCC
Confidence            000       0111111122346789999999888764  4444321  1        3689999999999999999999


Q ss_pred             Ccc
Q 013561          236 GVK  238 (441)
Q Consensus       236 G~~  238 (441)
                      |.+
T Consensus       149 G~~  151 (446)
T TIGR01424       149 GHE  151 (446)
T ss_pred             Ccc
Confidence            863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=99.86  E-value=6.4e-21  Score=199.71  Aligned_cols=211  Identities=17%  Similarity=0.135  Sum_probs=128.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC---------CCcccc----cchhhhh----------------cCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR---------NHMVFT----PLLASTC----------------VGTLE  159 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~---------~~~~~~----~ll~~~~----------------~g~~~  159 (441)
                      ..+|+||||||+|+.+|..+++.|.+|+|||+.         +.++.+    ++.|...                .|...
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~  104 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI  104 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence            468999999999999999999999999999962         223211    1222111                01110


Q ss_pred             ccccccchhhhh--------------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          160 FRSVAEPVSRIQ--------------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       160 ~~~~~~~~~~~~--------------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                      .......+.++.              +.+....+++++.+++..++.+...|...+         +++.++.||+|||||
T Consensus       105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~---------g~~~~~~~d~LIIAT  175 (499)
T PLN02507        105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLD---------GTKLRYTAKHILIAT  175 (499)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCC---------CcEEEEEcCEEEEec
Confidence            000111111111              112234689999999999887654444332         122368999999999


Q ss_pred             CCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----------------------------
Q 013561          226 GAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----------------------------  276 (441)
Q Consensus       226 Gs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----------------------------  276 (441)
                      |++|+.|++||.+. .   .+.+++..+... ...+.+.+ +|..++|+|.                             
T Consensus       176 Gs~p~~p~ipG~~~-~---~~~~~~~~l~~~-~k~vvVIG-gG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~  249 (499)
T PLN02507        176 GSRAQRPNIPGKEL-A---ITSDEALSLEEL-PKRAVVLG-GGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAV  249 (499)
T ss_pred             CCCCCCCCCCCccc-e---echHHhhhhhhc-CCeEEEEC-CcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHH
Confidence            99999999999632 1   233444443321 11222222 3444444330                             


Q ss_pred             --------ceE------------------EE-----------Ec------cCCc--------ccC---CceeeCCCcccC
Q 013561          277 --------YFV------------------IT-----------IT------LSFL--------VRL---SQIGVDEWLRAP  302 (441)
Q Consensus       277 --------~v~------------------V~-----------il------~~~~--------~~l---G~I~Vd~~lqt~  302 (441)
                              +++                  +.           ++      |..+        .++   |+|.||+++|| 
T Consensus       250 l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-  328 (499)
T PLN02507        250 VARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-  328 (499)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-
Confidence                    000                  00           00      0000        000   78999999999 


Q ss_pred             CCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          303 SVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       303 ~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      +.|||||+|||+.         .+.+++.|++||+++|+||.
T Consensus       329 s~p~IyAiGDv~~---------~~~l~~~A~~qg~~aa~ni~  361 (499)
T PLN02507        329 NIPSIWAIGDVTN---------RINLTPVALMEGTCFAKTVF  361 (499)
T ss_pred             CCCCEEEeeEcCC---------CCccHHHHHHHHHHHHHHHc
Confidence            9999999999992         35689999999999999986

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.86  E-value=1.7e-21  Score=202.89  Aligned_cols=211  Identities=19%  Similarity=0.219  Sum_probs=125.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh----------------cCCCCccccccchh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC----------------VGTLEFRSVAEPVS  168 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~----------------~g~~~~~~~~~~~~  168 (441)
                      ..+|+||||||||+++|..+++.|++|+|||+.+.++-+    ++.|...                .|. ........+.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~-~~~~~~~~~~   82 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGI-VFGEPKIDID   82 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCc-ccCCCCcCHH
Confidence            578999999999999999999999999999987654311    1221100                011 0000111111


Q ss_pred             hhh--------------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC-CC
Q 013561          169 RIQ--------------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT-FG  233 (441)
Q Consensus       169 ~~~--------------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~-~~  233 (441)
                      .+.              ..+.+..++.++.+.+..++  .+.+.+...+       ++..++.||+||||||++|.. |.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~~~-------g~~~~~~~d~lViATGs~p~~~p~  153 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTGED-------GKTTVIEFDNAIIAAGSRPIQLPF  153 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCC-------CceEEEEcCEEEEeCCCCCCCCCC
Confidence            110              01223458999999887665  4566655421       112478999999999999974 45


Q ss_pred             CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC------------------------------------c
Q 013561          234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK------------------------------------Y  277 (441)
Q Consensus       234 ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~------------------------------------~  277 (441)
                      +++..++++   +..++.++... .+.+.+.+ +|..|+|+|.                                    .
T Consensus       154 ~~~~~~~v~---~~~~~~~~~~~-~~~vvIiG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~  228 (471)
T PRK06467        154 IPHDDPRIW---DSTDALELKEV-PKRLLVMG-GGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ  228 (471)
T ss_pred             CCCCCCcEE---ChHHhhccccC-CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc
Confidence            665433332   22333333211 11122222 2333333220                                    0


Q ss_pred             eE------------------------------EE----Ec-----cCCc--------cc---CCceeeCCCcccCCCCCE
Q 013561          278 FV------------------------------IT----IT-----LSFL--------VR---LSQIGVDEWLRAPSVEDV  307 (441)
Q Consensus       278 v~------------------------------V~----il-----~~~~--------~~---lG~I~Vd~~lqt~~~~~V  307 (441)
                      ++                              +.    ++     |..+        .+   -|+|.||+++|| ++|+|
T Consensus       229 v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~V  307 (471)
T PRK06467        229 FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHI  307 (471)
T ss_pred             eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCE
Confidence            00                              00    00     0000        00   078999999999 99999


Q ss_pred             EEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          308 FALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       308 fA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+|||+      +   .|+++..|++||+.+|.||.
T Consensus       308 yAiGDv~------~---~~~la~~A~~eG~~aa~~i~  335 (471)
T PRK06467        308 FAIGDIV------G---QPMLAHKGVHEGHVAAEVIA  335 (471)
T ss_pred             EEehhhc------C---CcccHHHHHHHHHHHHHHHc
Confidence            9999998      2   36799999999999999997

>PRK14694 putative mercuric reductase; Provisional

Probab=99.86  E-value=5.6e-21  Score=199.05  Aligned_cols=213  Identities=17%  Similarity=0.174  Sum_probs=129.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------h------cCCC------Cc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------C------VGTL------EF  160 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------~------~g~~------~~  160 (441)
                      ...+|+||||||||+++|..|++.|.+|+|||+.. ++-+    ++.|..           .      .|..      +.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   83 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR   83 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence            35689999999999999999999999999999864 2211    111100           0      0111      00


Q ss_pred             cccccchhhhh---------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          161 RSVAEPVSRIQ---------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       161 ~~~~~~~~~~~---------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      ..+....++..         ..+.+..++.++.+++..+|.+...|.+.++         +..+++||+||||||++|+.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g---------~~~~~~~d~lViATGs~p~~  154 (468)
T PRK14694         84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDG---------GEQTVHFDRAFIGTGARPAE  154 (468)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCC---------CeEEEECCEEEEeCCCCCCC
Confidence            01110111110         1122345899999999999887766665442         12378999999999999999


Q ss_pred             CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----------------------------------
Q 013561          232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----------------------------------  276 (441)
Q Consensus       232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----------------------------------  276 (441)
                      |++||.++..  +.+..++.++... ...+.+.+ +|..|+|+|.                                   
T Consensus       155 p~i~G~~~~~--~~~~~~~~~l~~~-~~~vvViG-~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~  230 (468)
T PRK14694        155 PPVPGLAETP--YLTSTSALELDHI-PERLLVIG-ASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRR  230 (468)
T ss_pred             CCCCCCCCCc--eEcchhhhchhcC-CCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence            9999975421  1222333332211 11122222 2333333320                                   


Q ss_pred             -ce------------------EE-------E----Ec-----cCCc----------ccCCceeeCCCcccCCCCCEEEec
Q 013561          277 -YF------------------VI-------T----IT-----LSFL----------VRLSQIGVDEWLRAPSVEDVFALG  311 (441)
Q Consensus       277 -~v------------------~V-------~----il-----~~~~----------~~lG~I~Vd~~lqt~~~~~VfA~G  311 (441)
                       ++                  .+       .    ++     |..+          .+-|+|.||+++|| +.|+|||+|
T Consensus       231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~G  309 (468)
T PRK14694        231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT-TVSGIYAAG  309 (468)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc-CCCCEEEEe
Confidence             00                  00       0    00     0000          00177999999999 999999999


Q ss_pred             ccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          312 DCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       312 D~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+.         .|..++.|..||+.+|.||.
T Consensus       310 D~~~---------~~~~~~~A~~~G~~aa~~i~  333 (468)
T PRK14694        310 DCTD---------QPQFVYVAAAGGSRAAINMT  333 (468)
T ss_pred             ecCC---------CcccHHHHHHHHHHHHHHhc
Confidence            9992         36789999999999999996

>PRK06370 mercuric reductase; Validated

Probab=99.85  E-value=9.8e-21  Score=197.02  Aligned_cols=118  Identities=13%  Similarity=0.057  Sum_probs=74.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhh----------------hcCCC-------Cc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAST----------------CVGTL-------EF  160 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~----------------~~g~~-------~~  160 (441)
                      +...+|+||||||||+++|..+++.|++|+|||+...-+   ..++.|..                ..|..       +.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF   82 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence            335799999999999999999999999999999864211   11111110                01211       11


Q ss_pred             cccccchh--------hhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          161 RSVAEPVS--------RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       161 ~~~~~~~~--------~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      ..+....+        .....+.+..++.++.++...++  .+.+.+..            .++.||+||||||++|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v~~------------~~~~~d~lViATGs~p~~p  148 (463)
T PRK06370         83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRVGG------------ETLRAKRIFINTGARAAIP  148 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEECc------------EEEEeCEEEEcCCCCCCCC
Confidence            11110010        01111222237888887765443  55665532            2689999999999999999


Q ss_pred             CCCCcc
Q 013561          233 GIKGVK  238 (441)
Q Consensus       233 ~ipG~~  238 (441)
                      ++||.+
T Consensus       149 ~i~G~~  154 (463)
T PRK06370        149 PIPGLD  154 (463)
T ss_pred             CCCCCC
Confidence            999975

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.85  E-value=3.2e-21  Score=199.49  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhhh-----cCCCCccccc-------cchhh-h
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----ASTC-----VGTLEFRSVA-------EPVSR-I  170 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~~-----~g~~~~~~~~-------~~~~~-~  170 (441)
                      ..+|+||||||||+++|..|++.|++|+|||+.+......++     |...     ....++....       ..++. .
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN   82 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence            468999999999999999999999999999997642211121     1100     0000110000       00110 0


Q ss_pred             hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          171 QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       171 ~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      ...+.+..+++++.+++..++.+  .+.+...++        ..++.||+||||||++|..|++||.+
T Consensus        83 ~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~~~g--------~~~~~~d~lviATGs~p~~p~i~G~~  140 (441)
T PRK08010         83 FHNLADMPNIDVIDGQAEFINNH--SLRVHRPEG--------NLEIHGEKIFINTGAQTVVPPIPGIT  140 (441)
T ss_pred             HHHHhhcCCcEEEEEEEEEecCC--EEEEEeCCC--------eEEEEeCEEEEcCCCcCCCCCCCCcc
Confidence            11233345889999998888764  444433211        12689999999999999999999974

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.84  E-value=6.9e-21  Score=198.06  Aligned_cols=120  Identities=14%  Similarity=0.082  Sum_probs=74.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh--------cC---CCCcc----ccccchhh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC--------VG---TLEFR----SVAEPVSR  169 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~--------~g---~~~~~----~~~~~~~~  169 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+.++-.    .+.|...        ..   ...+.    ........
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFAD   84 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHH
Confidence            568999999999999999999999999999997655311    1111100        00   00000    00001110


Q ss_pred             --------------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561          170 --------------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK  235 (441)
Q Consensus       170 --------------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip  235 (441)
                                    ....+.+..++.++.+++..++.+  .+.+...+       ++..++.||+||||||++|+.|+++
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-------g~~~~~~~d~lviATGs~p~~p~~~  155 (461)
T PRK05249         85 LLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVECPD-------GEVETLTADKIVIATGSRPYRPPDV  155 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEeCC-------CceEEEEcCEEEEcCCCCCCCCCCC
Confidence                          011112335788999988777654  44444321       1123689999999999999988777


Q ss_pred             Cc
Q 013561          236 GV  237 (441)
Q Consensus       236 G~  237 (441)
                      +.
T Consensus       156 ~~  157 (461)
T PRK05249        156 DF  157 (461)
T ss_pred             CC
Confidence            65

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.84  E-value=1.7e-20  Score=183.36  Aligned_cols=114  Identities=15%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhhhcCC---CCccccccchhhhhhhhcCCCCEEEEE
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLASTCVGT---LEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +|+||||||||+++|..|++.|++|+|||+.+..+   ....++..+ +.   ....++...+++.   +. ..++.++.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~---~~-~~gv~~~~   76 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYP-GFPEGISGPELMEKMKEQ---AV-KFGAEIIY   76 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccC-CCCCCCChHHHHHHHHHH---HH-HcCCeEEE
Confidence            79999999999999999999999999999876211   000000011 11   0111222222222   22 24577777


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      ++|++++...+.+.+...+         ..++.||+||+|||+.|+.|++||.+
T Consensus        77 ~~v~~v~~~~~~~~v~~~~---------~~~~~~d~liiAtG~~~~~~~i~g~~  121 (300)
T TIGR01292        77 EEVIKVDLSDRPFKVKTGD---------GKEYTAKAVIIATGASARKLGIPGED  121 (300)
T ss_pred             EEEEEEEecCCeeEEEeCC---------CCEEEeCEEEECCCCCcccCCCCChh
Confidence            8999999887766555421         13789999999999999988999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.84  E-value=2.1e-20  Score=193.27  Aligned_cols=120  Identities=13%  Similarity=0.181  Sum_probs=76.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc-----hhhhhc-----CCCCccccccc-------hhhhh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL-----LASTCV-----GTLEFRSVAEP-------VSRIQ  171 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l-----l~~~~~-----g~~~~~~~~~~-------~~~~~  171 (441)
                      ..+|+||||||||++||..|++.|++|+|||+++......+     +|....     ...+...+...       ++...
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN   82 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999874311112     111110     00011111111       10000


Q ss_pred             hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          172 TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       172 ~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      .......++.++.+++..+  +.++|.+....        +..++.||+||||||++|+.|++||.+
T Consensus        83 ~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~--------~~~~~~~d~vViATGs~~~~p~i~G~~  139 (438)
T PRK07251         83 YAMLAGSGVDLYDAEAHFV--SNKVIEVQAGD--------EKIELTAETIVINTGAVSNVLPIPGLA  139 (438)
T ss_pred             HHHHHhCCCEEEEEEEEEc--cCCEEEEeeCC--------CcEEEEcCEEEEeCCCCCCCCCCCCcC
Confidence            0122335788888877654  45677766421        123689999999999999999999974

>PRK13748 putative mercuric reductase; Provisional

Probab=99.83  E-value=4.9e-20  Score=196.27  Aligned_cols=212  Identities=19%  Similarity=0.186  Sum_probs=124.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh---------------h--cCCC------Ccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST---------------C--VGTL------EFR  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~---------------~--~g~~------~~~  161 (441)
                      ..+|+||||||||+++|..|++.|.+|+|||++ .++-+    ++.|..               .  .|..      +.+
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  176 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS  176 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence            579999999999999999999999999999987 43211    111111               0  0211      000


Q ss_pred             ccccchhh---------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          162 SVAEPVSR---------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       162 ~~~~~~~~---------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+....+.         ....+.+..++.++.+++..++..  .+.+...+       ++..++.||+||||||++|+.|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-------g~~~~~~~d~lviAtGs~p~~p  247 (561)
T PRK13748        177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQ--TLIVRLND-------GGERVVAFDRCLIATGASPAVP  247 (561)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCC--EEEEEeCC-------CceEEEEcCEEEEcCCCCCCCC
Confidence            01000000         001122334789999998887754  44443311       1123689999999999999999


Q ss_pred             CCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC------------------------------------
Q 013561          233 GIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK------------------------------------  276 (441)
Q Consensus       233 ~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~------------------------------------  276 (441)
                      ++||.++.. .+ +..++.... ...+.+.+.+ +|..|+|+|.                                    
T Consensus       248 ~i~g~~~~~-~~-~~~~~~~~~-~~~~~vvViG-gG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~  323 (561)
T PRK13748        248 PIPGLKETP-YW-TSTEALVSD-TIPERLAVIG-SSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAE  323 (561)
T ss_pred             CCCCCCccc-eE-ccHHHhhcc-cCCCeEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHC
Confidence            999975321 11 112221110 0001122222 2333333320                                    


Q ss_pred             ceE------------------E-------E----Ec-----cCCc--------ccC---CceeeCCCcccCCCCCEEEec
Q 013561          277 YFV------------------I-------T----IT-----LSFL--------VRL---SQIGVDEWLRAPSVEDVFALG  311 (441)
Q Consensus       277 ~v~------------------V-------~----il-----~~~~--------~~l---G~I~Vd~~lqt~~~~~VfA~G  311 (441)
                      +++                  +       .    ++     |...        .++   |+|.||+++|| +.|||||+|
T Consensus       324 gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~G  402 (561)
T PRK13748        324 GIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAG  402 (561)
T ss_pred             CCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEee
Confidence            000                  0       0    00     0000        000   78999999999 999999999


Q ss_pred             ccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          312 DCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       312 D~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+.         .+.++..|+.||++||.||.
T Consensus       403 D~~~---------~~~~~~~A~~~g~~aa~~i~  426 (561)
T PRK13748        403 DCTD---------QPQFVYVAAAAGTRAAINMT  426 (561)
T ss_pred             ecCC---------CccchhHHHHHHHHHHHHHc
Confidence            9992         35788999999999999996

>PRK06116 glutathione reductase; Validated

Probab=99.83  E-value=3e-20  Score=192.75  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=73.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------------hcCCC------Ccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------------CVGTL------EFR  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------------~~g~~------~~~  161 (441)
                      ..+|+||||||||++||..|++.|++|+|||+. .++-+    .++|..                 ..|..      +..
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA   82 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence            458999999999999999999999999999986 33211    111110                 01110      000


Q ss_pred             ccccc----hhhh---hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          162 SVAEP----VSRI---QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       162 ~~~~~----~~~~---~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .+...    +.++   ........+++++.+++..++.  ++|.+ ++           .++.||+||||||+.|+.|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~-~g-----------~~~~~d~lViATGs~p~~p~i  148 (450)
T PRK06116         83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV-NG-----------ERYTADHILIATGGRPSIPDI  148 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-CC-----------EEEEeCEEEEecCCCCCCCCC
Confidence            00000    0000   0111223578999998887764  56665 21           368999999999999999999


Q ss_pred             CCcc
Q 013561          235 KGVK  238 (441)
Q Consensus       235 pG~~  238 (441)
                      ||.+
T Consensus       149 ~g~~  152 (450)
T PRK06116        149 PGAE  152 (450)
T ss_pred             CCcc
Confidence            9863

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.83  E-value=8.6e-20  Score=190.27  Aligned_cols=215  Identities=20%  Similarity=0.198  Sum_probs=126.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCC--------CCccc----ccchhhhh----------------cCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPR--------NHMVF----TPLLASTC----------------VGTLE  159 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~--------~~~~~----~~ll~~~~----------------~g~~~  159 (441)
                      ..+|+||||||+|+.+|..+++. |.+|+|||+.        +.++-    .+|.|...                .|...
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~   82 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEF   82 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeec
Confidence            46899999999999999999996 8999999973        23321    11211111                01100


Q ss_pred             c-cccccchhhh--------------h-hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561          160 F-RSVAEPVSRI--------------Q-TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI  223 (441)
Q Consensus       160 ~-~~~~~~~~~~--------------~-~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl  223 (441)
                      . ......+..+              . .++....+++++.+...-++  .++|.+....++.   ..+.+++.||+|||
T Consensus        83 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~---~~~~~~~~~d~lII  157 (486)
T TIGR01423        83 DRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPK---SAVKERLQAEHILL  157 (486)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCC---CCcceEEECCEEEE
Confidence            0 0001111111              0 11222358999999876554  5677775421100   01124789999999


Q ss_pred             cCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC--------ceEEE-------EccCCc-
Q 013561          224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK--------YFVIT-------ITLSFL-  287 (441)
Q Consensus       224 AtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~--------~v~V~-------il~~~~-  287 (441)
                      |||++|+.|++||.+. ++   +.+++..+... .+.+.+.+ +|..|+|+|.        +.+|+       +++.++ 
T Consensus       158 ATGs~p~~p~i~G~~~-~~---~~~~~~~~~~~-~~~vvIIG-gG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~  231 (486)
T TIGR01423       158 ATGSWPQMLGIPGIEH-CI---SSNEAFYLDEP-PRRVLTVG-GGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDS  231 (486)
T ss_pred             ecCCCCCCCCCCChhh-ee---chhhhhccccC-CCeEEEEC-CCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCH
Confidence            9999999999999642 22   22232222111 11122222 3444444331        11111       000000 


Q ss_pred             --------------------------------------------------------------------ccC---CceeeC
Q 013561          288 --------------------------------------------------------------------VRL---SQIGVD  296 (441)
Q Consensus       288 --------------------------------------------------------------------~~l---G~I~Vd  296 (441)
                                                                                          .++   |+|.||
T Consensus       232 ~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd  311 (486)
T TIGR01423       232 TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD  311 (486)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC
Confidence                                                                                000   789999


Q ss_pred             CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          297 EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       297 ~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      +++|| +.|||||+|||+      |   .+++++.|++||+++|+||.
T Consensus       312 ~~l~T-s~~~IyA~GDv~------~---~~~l~~~A~~qG~~aa~ni~  349 (486)
T TIGR01423       312 EFSRT-NVPNIYAIGDVT------D---RVMLTPVAINEGAAFVDTVF  349 (486)
T ss_pred             CCCcC-CCCCEEEeeecC------C---CcccHHHHHHHHHHHHHHHh
Confidence            99999 999999999998      2   46799999999999999997

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00058 glutathione reductase; Provisional

Probab=99.83  E-value=4.9e-20  Score=194.40  Aligned_cols=53  Identities=32%  Similarity=0.488  Sum_probs=44.2

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccc------------------------cCCCCC-CCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLE------------------------QTGKPV-LPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~------------------------~~G~~~-~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.+.+                        .+++.. .++++..|..||+++|+||.
T Consensus       353 G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~  430 (561)
T PTZ00058        353 GYIKVDDNQRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF  430 (561)
T ss_pred             CeEEECcCCcc-CCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence            78999999999 9999999999997321                        123322 47899999999999999997

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.83  E-value=2.4e-20  Score=194.04  Aligned_cols=44  Identities=41%  Similarity=0.575  Sum_probs=40.4

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.         .++++..|++||+.+|.||.
T Consensus       289 g~i~vd~~~~t-~~~~VyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~  332 (462)
T PRK06416        289 GFIEVDEQLRT-NVPNIYAIGDIVG---------GPMLAHKASAEGIIAAEAIA  332 (462)
T ss_pred             CEEeECCCCcc-CCCCEEEeeecCC---------CcchHHHHHHHHHHHHHHHc
Confidence            67999999999 9999999999992         36799999999999999997

>PRK14727 putative mercuric reductase; Provisional

Probab=99.83  E-value=6.1e-20  Score=191.73  Aligned_cols=120  Identities=16%  Similarity=0.112  Sum_probs=75.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh----------------h-c----CCCCcc-cccc-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST----------------C-V----GTLEFR-SVAE-  165 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~----------------~-~----g~~~~~-~~~~-  165 (441)
                      +.+|+|||+|++|+++|..|++.|.+|+|||+.+.++- .+++..                . .    |..... .+.. 
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG-~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   94 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG-CCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG   94 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee-EeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence            56899999999999999999999999999999755431 111110                0 0    111000 0000 


Q ss_pred             -----------chhh--hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          166 -----------PVSR--IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       166 -----------~~~~--~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                                 .++.  ....+....++.++.+...-++.  +.+.+...+       ++..++.||+||||||++|+.|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-------g~~~~~~~d~lViATGs~p~~p  165 (479)
T PRK14727         95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHD-------GGERVLAADRCLIATGSTPTIP  165 (479)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC--CEEEEEeCC-------CceEEEEeCEEEEecCCCCCCC
Confidence                       0000  01112223478888888766654  455554321       1123689999999999999999


Q ss_pred             CCCCcc
Q 013561          233 GIKGVK  238 (441)
Q Consensus       233 ~ipG~~  238 (441)
                      ++||.+
T Consensus       166 ~i~G~~  171 (479)
T PRK14727        166 PIPGLM  171 (479)
T ss_pred             CCCCcC
Confidence            999974

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.83  E-value=8.6e-20  Score=189.97  Aligned_cols=213  Identities=23%  Similarity=0.236  Sum_probs=123.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh----------------hcCCCC---------
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST----------------CVGTLE---------  159 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~----------------~~g~~~---------  159 (441)
                      +++|+|||+|++|+++|..+++.|++|+|||+++ ++.+    .+.|..                ..|...         
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            3589999999999999999999999999999875 2211    111100                012110         


Q ss_pred             ccccccchhhh-------hhhhcCCCCEEEEEEEEEEEe--CCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          160 FRSVAEPVSRI-------QTSLSSDPNSYFYLASCIGID--TDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       160 ~~~~~~~~~~~-------~~~~~~~~~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      ...+....++.       .....+..+++++.+++..++  .+.+.+.+...+       ++..++.||+||||||++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~-------g~~~~~~~d~lViATGs~p~  152 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTAD-------GGEETLDADVVLIATGASPR  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCC-------CceEEEecCEEEEcCCCCCC
Confidence            00000001111       001122357899999888755  455666665421       11236899999999999998


Q ss_pred             CCCCCCcc-cccccccCHhHHHHHHHHHHHhcccccCCCCceeEee----------------------------------
Q 013561          231 TFGIKGVK-ENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS----------------------------------  275 (441)
Q Consensus       231 ~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a----------------------------------  275 (441)
                      .|+.++.. +.++..+.+.+...+.    ..+.+.+ +|..++|+|                                  
T Consensus       153 ~~p~~~~~~~~v~~~~~~~~~~~~~----~~vvVIG-gG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~  227 (466)
T PRK07845        153 ILPTAEPDGERILTWRQLYDLDELP----EHLIVVG-SGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEV  227 (466)
T ss_pred             CCCCCCCCCceEEeehhhhcccccC----CeEEEEC-CCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHH
Confidence            76654432 3333333332221111    1111111 222222222                                  


Q ss_pred             ---------------------CceEEE------------Ec-----cCCc--------ccC---CceeeCCCcccCCCCC
Q 013561          276 ---------------------KYFVIT------------IT-----LSFL--------VRL---SQIGVDEWLRAPSVED  306 (441)
Q Consensus       276 ---------------------~~v~V~------------il-----~~~~--------~~l---G~I~Vd~~lqt~~~~~  306 (441)
                                           +.+.+.            ++     |..+        ..+   |+|.||+++|| +.|+
T Consensus       228 L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~  306 (466)
T PRK07845        228 FARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPG  306 (466)
T ss_pred             HHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCC
Confidence                                 001110            00     0000        001   78999999999 9999


Q ss_pred             EEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          307 VFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       307 VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |||+|||+.         .++++..|..||+++|.||.
T Consensus       307 IyA~GD~~~---------~~~l~~~A~~~g~~aa~~i~  335 (466)
T PRK07845        307 IYAAGDCTG---------VLPLASVAAMQGRIAMYHAL  335 (466)
T ss_pred             EEEEeeccC---------CccchhHHHHHHHHHHHHHc
Confidence            999999992         36789999999999999997

>PLN02546 glutathione reductase

Probab=99.83  E-value=6.2e-20  Score=193.72  Aligned_cols=116  Identities=13%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC---------CCcc----cccchhhhh----------------cCCC-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR---------NHMV----FTPLLASTC----------------VGTL-  158 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~---------~~~~----~~~ll~~~~----------------~g~~-  158 (441)
                      ..+|+|||+||+|+.+|..+++.|.+|+|||+.         ..++    ..+|.|...                .|.. 
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~  158 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY  158 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence            358999999999999999999999999999951         1221    111211111                1110 


Q ss_pred             ------Ccccccc----chh---hhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          159 ------EFRSVAE----PVS---RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       159 ------~~~~~~~----~~~---~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                            +...+..    .+.   +......+..+++++.+++..++..  .+.+..            .++.||+|||||
T Consensus       159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v~G------------~~~~~D~LVIAT  224 (558)
T PLN02546        159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDVDG------------KLYTARNILIAV  224 (558)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEECC------------EEEECCEEEEeC
Confidence                  0000000    011   1111123346899999999888763  454421            268999999999


Q ss_pred             CCCcCCCCCCCcc
Q 013561          226 GAEPLTFGIKGVK  238 (441)
Q Consensus       226 Gs~p~~~~ipG~~  238 (441)
                      |++|..|++||.+
T Consensus       225 Gs~p~~P~IpG~~  237 (558)
T PLN02546        225 GGRPFIPDIPGIE  237 (558)
T ss_pred             CCCCCCCCCCChh
Confidence            9999999999963

>TIGR02053 MerA mercuric reductase

Probab=99.82  E-value=4.9e-20  Score=191.80  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hh-----------hh----cCC------CCccccc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----AS-----------TC----VGT------LEFRSVA  164 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~-----------~~----~g~------~~~~~~~  164 (441)
                      +|+||||||||+++|..+++.|++|+|||+.+ ++- .++     |.           ..    .|.      .+...+.
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG-~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGG-TCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccC-CeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            69999999999999999999999999999875 321 221     10           00    010      0000000


Q ss_pred             cchhhh--------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561          165 EPVSRI--------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG  236 (441)
Q Consensus       165 ~~~~~~--------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG  236 (441)
                      ...++.        ...+.+..+++++.+++..++  .+++.+.++          ...+.||+||||||++|+.|++||
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g----------~~~~~~~~lIiATGs~p~~p~i~G  147 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLG----------REVRGAKRFLIATGARPAIPPIPG  147 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCC----------eEEEEeCEEEEcCCCCCCCCCCCC
Confidence            000111        011223457888888887654  456665431          125789999999999999999999


Q ss_pred             cc
Q 013561          237 VK  238 (441)
Q Consensus       237 ~~  238 (441)
                      .+
T Consensus       148 ~~  149 (463)
T TIGR02053       148 LK  149 (463)
T ss_pred             cc
Confidence            75

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.82  E-value=5e-20  Score=190.86  Aligned_cols=44  Identities=39%  Similarity=0.528  Sum_probs=40.2

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+      +   .+.++..|++||+.+|+||.
T Consensus       283 G~i~vd~~~~T-~~p~IyAiGD~~------~---~~~~~~~A~~~g~~aa~~i~  326 (450)
T TIGR01421       283 GQIIVDEYQNT-NVPGIYALGDVV------G---KVELTPVAIAAGRKLSERLF  326 (450)
T ss_pred             CcEEeCCCCcC-CCCCEEEEEecC------C---CcccHHHHHHHHHHHHHHHh
Confidence            78999999999 999999999999      2   35789999999999999997

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07846 mycothione reductase; Reviewed

Probab=99.82  E-value=1.8e-19  Score=186.63  Aligned_cols=206  Identities=18%  Similarity=0.203  Sum_probs=123.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc---ccccchhhhh----------------cCCC------Cccccc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM---VFTPLLASTC----------------VGTL------EFRSVA  164 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~---~~~~ll~~~~----------------~g~~------~~~~~~  164 (441)
                      .+|+||||||+|..+|...  .|.+|+|||+..--   .+.++.|...                .|..      +...+.
T Consensus         2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (451)
T PRK07846          2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV   79 (451)
T ss_pred             CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence            4799999999999998774  59999999985311   1112322211                1211      010111


Q ss_pred             cch----hhhh----hhh-cCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561          165 EPV----SRIQ----TSL-SSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK  235 (441)
Q Consensus       165 ~~~----~~~~----~~~-~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip  235 (441)
                      ...    +++.    ... .+..+++++.++...+  +.++|.+.++           .++.||+||||||++|+.|++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~~g-----------~~~~~d~lViATGs~p~~p~i~  146 (451)
T PRK07846         80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTGDG-----------EEITADQVVIAAGSRPVIPPVI  146 (451)
T ss_pred             HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEECCC-----------CEEEeCEEEEcCCCCCCCCCCC
Confidence            111    1110    011 2235788888887766  4567776532           2689999999999999999999


Q ss_pred             CcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC---------------------------------------
Q 013561          236 GVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK---------------------------------------  276 (441)
Q Consensus       236 G~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~---------------------------------------  276 (441)
                      |.+..  .+.+.+++..+... .+.+.+.+ +|..|+|+|.                                       
T Consensus       147 g~~~~--~~~~~~~~~~l~~~-~~~vvIIG-gG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~  222 (451)
T PRK07846        147 ADSGV--RYHTSDTIMRLPEL-PESLVIVG-GGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWD  222 (451)
T ss_pred             CcCCc--cEEchHHHhhhhhc-CCeEEEEC-CCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHhcCeE
Confidence            86421  23444555444321 11222222 3343433320                                       


Q ss_pred             ---------------ceEEE------------Ec-----cCCc--------ccC---CceeeCCCcccCCCCCEEEeccc
Q 013561          277 ---------------YFVIT------------IT-----LSFL--------VRL---SQIGVDEWLRAPSVEDVFALGDC  313 (441)
Q Consensus       277 ---------------~v~V~------------il-----~~~~--------~~l---G~I~Vd~~lqt~~~~~VfA~GD~  313 (441)
                                     .+.++            ++     |..+        .++   |+|.||+++|| ++|+|||+|||
T Consensus       223 i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~  301 (451)
T PRK07846        223 VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDV  301 (451)
T ss_pred             EEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeec
Confidence                           00000            00     0000        000   78999999999 99999999999


Q ss_pred             ccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          314 AGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       314 a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      +.         .+++++.|.+||+++|+||.
T Consensus       302 ~~---------~~~l~~~A~~~g~~~a~ni~  323 (451)
T PRK07846        302 SS---------PYQLKHVANHEARVVQHNLL  323 (451)
T ss_pred             CC---------CccChhHHHHHHHHHHHHHc
Confidence            92         35789999999999999997

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.82  E-value=8.9e-20  Score=189.88  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=39.0

Q ss_pred             ceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       292 ~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .+.||+++|| +.|+|||+|||+.         .|++++.|.+||+++|+||.
T Consensus       294 G~~vd~~~~T-s~~~IyA~GD~~~---------~~~la~~A~~~g~~aa~~i~  336 (466)
T PRK06115        294 GMLANDHHRT-SVPGVWVIGDVTS---------GPMLAHKAEDEAVACIERIA  336 (466)
T ss_pred             CEEECCCeec-CCCCEEEeeecCC---------CcccHHHHHHHHHHHHHHHc
Confidence            4789999999 9999999999992         36799999999999999997

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.81  E-value=1.5e-19  Score=187.90  Aligned_cols=117  Identities=15%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhh----------------hhcCCCCc-cccccchhhh
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAS----------------TCVGTLEF-RSVAEPVSRI  170 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~----------------~~~g~~~~-~~~~~~~~~~  170 (441)
                      +|+||||||||+++|..+++.|.+|+|||+.+..+   ..++.|.                ...|.... .....++..+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            79999999999999999999999999999975321   1111110                01122110 0111111111


Q ss_pred             --------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561          171 --------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG  236 (441)
Q Consensus       171 --------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG  236 (441)
                                    .+.+.+..+++++.+++..++.  +.+.+...+        +..++.||+||||||++|+.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~~v~v~~~~--------~~~~~~~d~lviATGs~p~~~p~~~  151 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--HRVRVEYGD--------KEEVVDAEQFIIAAGSEPTELPFAP  151 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--CEEEEeeCC--------CcEEEECCEEEEeCCCCCCCCCCCC
Confidence                          1112334688999999887764  445554311        1136899999999999998877777


Q ss_pred             c
Q 013561          237 V  237 (441)
Q Consensus       237 ~  237 (441)
                      .
T Consensus       152 ~  152 (458)
T PRK06912        152 F  152 (458)
T ss_pred             C
Confidence            5

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.81  E-value=1.4e-19  Score=188.78  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh----------------hcCCC------Cccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST----------------CVGTL------EFRS  162 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~----------------~~g~~------~~~~  162 (441)
                      ..+|+||||||||+++|..|++.|++|+|||+. .++-+    ++.|..                ..|..      +...
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK   82 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            568999999999999999999999999999986 33211    111110                01110      0000


Q ss_pred             cccc-------hhhhhhhhcCCCCEEEEEEEEEEEeCC-----CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          163 VAEP-------VSRIQTSLSSDPNSYFYLASCIGIDTD-----KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       163 ~~~~-------~~~~~~~~~~~~~v~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      +...       +......+.+..+++++.+++..++.+     .+.+.+...+       ++..++.||+||||||++|+
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~-------g~~~~~~~d~lViATGs~p~  155 (472)
T PRK05976         83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETET-------GENEMIIPENLLIATGSRPV  155 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCC-------CceEEEEcCEEEEeCCCCCC
Confidence            0000       110011122345899999999998876     3355554321       11247899999999999986


Q ss_pred             CC
Q 013561          231 TF  232 (441)
Q Consensus       231 ~~  232 (441)
                      .+
T Consensus       156 ~~  157 (472)
T PRK05976        156 EL  157 (472)
T ss_pred             CC
Confidence            54

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.81  E-value=2.8e-19  Score=186.63  Aligned_cols=121  Identities=16%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC--------Cccc----ccchhhh----------------hcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN--------HMVF----TPLLAST----------------CVGTLEFR  161 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~--------~~~~----~~ll~~~----------------~~g~~~~~  161 (441)
                      .+|+|||+||+|+.+|..+++.|.+|+|||+..        .++.    .++.|..                ..|.....
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~   82 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEE   82 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCC
Confidence            479999999999999999999999999999731        1211    1121110                01111000


Q ss_pred             ccccch--------------hhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          162 SVAEPV--------------SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       162 ~~~~~~--------------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                      .....+              ......+.+..+++++.+...-++.  +++.+...+       ++...++||+||||||+
T Consensus        83 ~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-------g~~~~~~~d~lVIATGs  153 (484)
T TIGR01438        83 TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKK-------GKEKIYSAERFLIATGE  153 (484)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccC-------CCceEEEeCEEEEecCC
Confidence            001111              1111112344688999998877764  456665321       11246899999999999


Q ss_pred             CcCCCCCCCccc
Q 013561          228 EPLTFGIKGVKE  239 (441)
Q Consensus       228 ~p~~~~ipG~~~  239 (441)
                      +|+.|++||.++
T Consensus       154 ~p~~p~ipG~~~  165 (484)
T TIGR01438       154 RPRYPGIPGAKE  165 (484)
T ss_pred             CCCCCCCCCccc
Confidence            999999999754

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.81  E-value=1.5e-19  Score=191.72  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=75.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh--hcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST--CVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      ..+|+|||||||||+||..|++.|++|+|||+.+..+........  ..+..... .....+.+.. ..+..++.++.++
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~-~~~l~~~l~~-~~~~~gv~~~~~~   81 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTT-GPELMQEMRQ-QAQDFGVKFLQAE   81 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCC-HHHHHHHHHH-HHHHcCCEEeccE
Confidence            468999999999999999999999999999986532210100000  00110000 0001111111 2223467888889


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      |++++.+.+...+....          .++.||+||||||+.|+.|++||.+
T Consensus        82 V~~i~~~~~~~~V~~~~----------g~~~a~~lVlATGa~p~~~~ipG~~  123 (555)
T TIGR03143        82 VLDVDFDGDIKTIKTAR----------GDYKTLAVLIATGASPRKLGFPGEE  123 (555)
T ss_pred             EEEEEecCCEEEEEecC----------CEEEEeEEEECCCCccCCCCCCCHH
Confidence            99998866544444321          2578999999999999999999964

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10262 thioredoxin reductase; Provisional

Probab=99.81  E-value=9.5e-20  Score=180.70  Aligned_cols=118  Identities=13%  Similarity=0.071  Sum_probs=74.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      .++|+|||||||||+||..|++.|++|++||..+.-+   +.+..+..+ +....-. ...+.+.........+..+..+
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLT-GPLLMERMHEHATKFETEIIFD   83 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCC-HHHHHHHHHHHHHHCCCEEEee
Confidence            6789999999999999999999999999998643211   111111111 1100000 0011111111111223456666


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      ++.+|+...+.+.+....          ..+.||+||||||+.|+.|++||.+
T Consensus        84 ~v~~v~~~~~~~~v~~~~----------~~~~~d~vilAtG~~~~~~~i~g~~  126 (321)
T PRK10262         84 HINKVDLQNRPFRLTGDS----------GEYTCDALIIATGASARYLGLPSEE  126 (321)
T ss_pred             EEEEEEecCCeEEEEecC----------CEEEECEEEECCCCCCCCCCCCCHH
Confidence            788888877777665421          2689999999999999999999954

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.80  E-value=7.4e-19  Score=182.83  Aligned_cols=44  Identities=41%  Similarity=0.646  Sum_probs=40.5

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.         .++++..|+.||+.+|+||.
T Consensus       287 g~i~vd~~l~t-~~~~IyaiGD~~~---------~~~~~~~A~~~g~~aa~~i~  330 (461)
T TIGR01350       287 GRIVVDEYMRT-NVPGIYAIGDVIG---------GPMLAHVASHEGIVAAENIA  330 (461)
T ss_pred             CcEeeCCCccc-CCCCEEEeeecCC---------CcccHHHHHHHHHHHHHHHc
Confidence            78999999999 9999999999992         36799999999999999997

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.79  E-value=1.2e-18  Score=179.48  Aligned_cols=208  Identities=18%  Similarity=0.240  Sum_probs=138.7

Q ss_pred             HHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCCc-cc-cccchhhhhhhhcCCCCEEEE-EEEEEEEeCCCCE
Q 013561          123 RFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLEF-RS-VAEPVSRIQTSLSSDPNSYFY-LASCIGIDTDKHE  196 (441)
Q Consensus       123 ~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~v~~~-~~~v~~id~~~~~  196 (441)
                      +||.+|++.  +++|||||+++++.|.++ ++....|.... ++ +....+.    +....++.++ .++|++||.+++.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~~~gv~~~~~~~V~~id~~~~~   76 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEV----FIKKRGIDVKTNHEVIEVNDERQT   76 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHH----HHHhcCCeEEecCEEEEEECCCCE
Confidence            367777664  588999999999988874 66665554332 11 1111222    2223467765 5699999999999


Q ss_pred             EEEEecCCCCCCCCCCcceee--CCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH----HhcccccCCCC
Q 013561          197 VYCETVNNGKLSHEPHQFKVA--YDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL----LNLMLSENPGD  269 (441)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~i~--yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~----~~~~~a~~~G~  269 (441)
                      +.+.+..++        .++.  ||+||||||++|+.|++||.+ ++++.++++.++.+++..+.    ..+.+.+ +|.
T Consensus        77 v~~~~~~~~--------~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViG-gG~  147 (427)
T TIGR03385        77 VVVRNNKTN--------ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIG-GGY  147 (427)
T ss_pred             EEEEECCCC--------CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEEC-CCH
Confidence            988763211        2456  999999999999999999986 67788888888887776652    1222222 344


Q ss_pred             ceeEeeC-----ceEEE------------------------------------------------------------Ecc
Q 013561          270 TVQLFSK-----YFVIT------------------------------------------------------------ITL  284 (441)
Q Consensus       270 ~~vE~a~-----~v~V~------------------------------------------------------------il~  284 (441)
                      .|+|+|.     +.+|+                                                            ++-
T Consensus       148 ~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~  227 (427)
T TIGR03385       148 IGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVIL  227 (427)
T ss_pred             HHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEE
Confidence            4444330     00011                                                            000


Q ss_pred             --CC----------ccc---CCceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHHHHHHHHHHHHHHH
Q 013561          285 --SF----------LVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       285 --~~----------~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        +.          +..   -|+|.||+++|| +.|+|||+|||+..++.. |++..+++++.|.+||+++|+||.
T Consensus       228 a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       228 ATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence              00          000   078999999999 999999999999765432 333346799999999999999996

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.78  E-value=1.8e-18  Score=172.29  Aligned_cols=219  Identities=19%  Similarity=0.246  Sum_probs=150.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCccccc-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTP-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  184 (441)
                      -+.++|||+|++|..|+..++..|  .+++++-++.++.|.+ .|+....-  ..+.    ++.....+.+..+++++. 
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~----~a~r~~e~Yke~gIe~~~~  147 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT--VGEG----LAKRTPEFYKEKGIELILG  147 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee--cccc----ccccChhhHhhcCceEEEc
Confidence            468999999999999999998866  4799998888877664 22221110  0111    111111123334666554 


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHh-cc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLN-LM  262 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~-~~  262 (441)
                      +.|+.+|...+++.+.++           +.+.||+|+||||+.|+.+++||.+ +++.++++++|+..+...+... ..
T Consensus       148 t~v~~~D~~~K~l~~~~G-----------e~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v  216 (478)
T KOG1336|consen  148 TSVVKADLASKTLVLGNG-----------ETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKV  216 (478)
T ss_pred             ceeEEeeccccEEEeCCC-----------ceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence            589999999999988774           4899999999999999999999997 8899999999999887665321 11


Q ss_pred             cccCCCCceeEeeCc-----eEEE--------------------------------------------------------
Q 013561          263 LSENPGDTVQLFSKY-----FVIT--------------------------------------------------------  281 (441)
Q Consensus       263 ~a~~~G~~~vE~a~~-----v~V~--------------------------------------------------------  281 (441)
                      +...+|..++|++..     ..|+                                                        
T Consensus       217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d  296 (478)
T KOG1336|consen  217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD  296 (478)
T ss_pred             EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence            111245555554411     1111                                                        


Q ss_pred             ---------Ec--------cCCc-----ccCCceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHHHHHHHHH
Q 013561          282 ---------IT--------LSFL-----VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGKY  338 (441)
Q Consensus       282 ---------il--------~~~~-----~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~~  338 (441)
                               ++        +-+.     ...|.|.||+.||| ++|||||+||+++++-+. +.......++.|..+|+.
T Consensus       297 g~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~  375 (478)
T KOG1336|consen  297 GKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ  375 (478)
T ss_pred             CCEeccCeEEEeeccccccccccccceecccCCEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence                     00        0000     00199999999999 899999999999986432 222235789999999998


Q ss_pred             HHHHHHH
Q 013561          339 LAELFNK  345 (441)
Q Consensus       339 aA~nI~~  345 (441)
                      +...|..
T Consensus       376 av~ai~~  382 (478)
T KOG1336|consen  376 AVKAIKM  382 (478)
T ss_pred             hhhhhhc
Confidence            8888773

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.78  E-value=1.6e-18  Score=179.95  Aligned_cols=216  Identities=21%  Similarity=0.298  Sum_probs=158.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccc-cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~-~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +.++||||.|++|..+..++..   .-++||+|-..++..|. .+|..+..|..+.+++.....++    .+..++..+.
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dw----y~~~~i~L~~   78 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDW----YEENGITLYT   78 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhh----HHHcCcEEEc
Confidence            5689999999999988877755   55899999999988776 56666666655655555444443    3345677666


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHhc-
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLNL-  261 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~~-  261 (441)
                      + .|+.||..++.|+.+.+           .++.||.||+||||.|+.+++||.+ ..++.+++++|...+...- ... 
T Consensus        79 ~~~v~~idr~~k~V~t~~g-----------~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a-r~~~  146 (793)
T COG1251          79 GEKVIQIDRANKVVTTDAG-----------RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA-RNKK  146 (793)
T ss_pred             CCeeEEeccCcceEEccCC-----------cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-hccC
Confidence            5 89999999999987664           4789999999999999999999987 7889999999998877652 221 


Q ss_pred             --ccccCCCCceeEeeCc--------------------------------------eEEE-------Ecc----------
Q 013561          262 --MLSENPGDTVQLFSKY--------------------------------------FVIT-------ITL----------  284 (441)
Q Consensus       262 --~~a~~~G~~~vE~a~~--------------------------------------v~V~-------il~----------  284 (441)
                        .+.+ +|.-|+|.|..                                      +++.       ++.          
T Consensus       147 ~avVIG-GGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~  225 (793)
T COG1251         147 KAVVIG-GGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFA  225 (793)
T ss_pred             CcEEEc-cchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeec
Confidence              1222 45555554410                                      1111       000          


Q ss_pred             --------------CCcccC-----------CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          285 --------------SFLVRL-----------SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       285 --------------~~~~~l-----------G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                                    .+-+..           ..|+||++||| +.|+|||+|+|++..   |  ....++-.+..||+++
T Consensus       226 DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqT-sdpdIYAvGEcae~~---g--~~yGLVaP~yeq~~v~  299 (793)
T COG1251         226 DGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQT-SDPDIYAVGECAEHR---G--KVYGLVAPLYEQAKVL  299 (793)
T ss_pred             CCCcccceeEEEecccccccHhHHhcCcCcCCCeeecccccc-cCCCeeehhhHHHhc---C--ccceehhHHHHHHHHH
Confidence                          000000           46999999999 999999999999763   4  3667899999999999


Q ss_pred             HHHHHHHh
Q 013561          340 AELFNKKI  347 (441)
Q Consensus       340 A~nI~~~l  347 (441)
                      |+++....
T Consensus       300 a~hl~~~~  307 (793)
T COG1251         300 ADHLCGGE  307 (793)
T ss_pred             HHHhccCc
Confidence            99998443

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.78  E-value=1.3e-18  Score=180.89  Aligned_cols=45  Identities=33%  Similarity=0.433  Sum_probs=40.9

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                      |+|.||+++|| +.|+|||+|||+.         .++++..|+.||+++|.||..
T Consensus       286 g~i~vd~~~~t-s~~~IyA~GD~~~---------~~~~~~~A~~qg~~aa~~i~~  330 (460)
T PRK06292        286 GRPVVDEHTQT-SVPGIYAAGDVNG---------KPPLLHEAADEGRIAAENAAG  330 (460)
T ss_pred             CcEeECCCccc-CCCCEEEEEecCC---------CccchhHHHHHHHHHHHHhcC
Confidence            78999999999 9999999999992         357899999999999999973

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.77  E-value=4e-18  Score=178.72  Aligned_cols=122  Identities=15%  Similarity=0.098  Sum_probs=73.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC--------Cccc----ccchhhh-----------------hcCCC-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN--------HMVF----TPLLAST-----------------CVGTL-  158 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~--------~~~~----~~ll~~~-----------------~~g~~-  158 (441)
                      ..+|+||||||||++||..+++.|.+|+|||+.+        .++-    ..+.|..                 ..|.. 
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~   84 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT   84 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            4589999999999999999999999999999631        1211    1111210                 01111 


Q ss_pred             ----Cccccccchhhhhh-------hhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          159 ----EFRSVAEPVSRIQT-------SLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       159 ----~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                          +...+....+...+       ...+..++.++.+++..++  .++|.+.+..        +...+.||+||||||+
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~--------~~~~i~~d~lIIATGs  154 (499)
T PTZ00052         85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNS--------QEETITAKYILIATGG  154 (499)
T ss_pred             CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCC--------CceEEECCEEEEecCC
Confidence                11111111111100       0112257788888776543  4566665321        1236899999999999


Q ss_pred             CcCCC-CCCCcccc
Q 013561          228 EPLTF-GIKGVKEN  240 (441)
Q Consensus       228 ~p~~~-~ipG~~~~  240 (441)
                      .|+.| ++||.++.
T Consensus       155 ~p~~p~~i~G~~~~  168 (499)
T PTZ00052        155 RPSIPEDVPGAKEY  168 (499)
T ss_pred             CCCCCCCCCCccce
Confidence            99988 49987543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.76  E-value=1.1e-18  Score=183.69  Aligned_cols=117  Identities=12%  Similarity=0.085  Sum_probs=73.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc----hhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL----LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l----l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      ..++|+||||||||++||..|++.|++|+||++.  ++....    ++... +... .......+.+.+.+.+ .++.+.
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~-~~~~-~~~~~l~~~l~~~l~~-~gv~i~  285 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLI-SVPY-TTGSQLAANLEEHIKQ-YPIDLM  285 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCccccc-ccCC-CCHHHHHHHHHHHHHH-hCCeEE
Confidence            3679999999999999999999999999999753  221110    11110 1100 0000111122121222 356665


Q ss_pred             E-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          184 L-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       184 ~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      . .+|.+++.+.+.+.+...+.         ..+.||+||+|||+.|+.+++||..
T Consensus       286 ~~~~V~~I~~~~~~~~v~~~~g---------~~i~~d~lIlAtGa~~~~~~ipG~~  332 (515)
T TIGR03140       286 ENQRAKKIETEDGLIVVTLESG---------EVLKAKSVIVATGARWRKLGVPGEK  332 (515)
T ss_pred             cCCEEEEEEecCCeEEEEECCC---------CEEEeCEEEECCCCCcCCCCCCCHH
Confidence            5 57888887665555443211         2689999999999999999999963

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.75  E-value=1.9e-19  Score=165.80  Aligned_cols=185  Identities=26%  Similarity=0.312  Sum_probs=113.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc-cchhhhhc-CCCCccccccchh--hhhhhhcCCCCEEE-EEE
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT-PLLASTCV-GTLEFRSVAEPVS--RIQTSLSSDPNSYF-YLA  185 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~-~ll~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~~v~~-~~~  185 (441)
                      +|+||||||||++||..|++.+++|+|||+.+...+. ..++.... ............+  ...+.+. ..++.+ +..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~   79 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLK-NRGVEIRLNA   79 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHH-HHTHEEEHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccc-cceEEEeecc
Confidence            6999999999999999999999999999998755432 11111110 0000000000000  1111111 235666 557


Q ss_pred             EEEEEeCCCCEE-----EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH-
Q 013561          186 SCIGIDTDKHEV-----YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL-  259 (441)
Q Consensus       186 ~v~~id~~~~~v-----~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~-  259 (441)
                      ++.+|+...+.+     .+....      .++..++.||+||||||+.|+.|++||. +.....+++.++..+...... 
T Consensus        80 ~v~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~  152 (201)
T PF07992_consen   80 KVVSIDPESKRVVCPAVTIQVVE------TGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELLESP  152 (201)
T ss_dssp             TEEEEEESTTEEEETCEEEEEEE------TTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHSSTT
T ss_pred             ccccccccccccccCcccceeec------cCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccccccc
Confidence            889999888853     221110      1234589999999999999999999997 345556778888877765421 


Q ss_pred             -hcccccCCC---CceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEeccccccc
Q 013561          260 -NLMLSENPG---DTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFL  317 (441)
Q Consensus       260 -~~~~a~~~G---~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~  317 (441)
                       .+.+.+...   ..++++            ++. |+|.||+++|| +.|+|||+|||+.++
T Consensus       153 ~~v~VvG~~~l~~~~~~~~------------~~~-g~i~vd~~~~t-~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  153 KRVAVVGTEFLAEKLGVEL------------DEN-GFIKVDENLQT-SVPGIYAAGDCAGIY  200 (201)
T ss_dssp             SEEEEESTTTSTHHTTSTB------------TTT-SSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred             ccccccccccccccccccc------------ccc-ccccccccccc-ccccccccccccccC
Confidence             111111000   000111            111 89999999999 899999999999653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-17  Score=163.21  Aligned_cols=218  Identities=14%  Similarity=0.029  Sum_probs=126.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCccc---ccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVF---TPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~---~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      ..+|+|||||||||+||.++++.+.+ ++|+|....-++   ....+..+ |..... ....+.+....+....++++..
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venyp-g~~~~~-~g~~L~~~~~~~a~~~~~~~~~   80 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP-GFPGGI-LGPELMEQMKEQAEKFGVEIVE   80 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCC-CCccCC-chHHHHHHHHHHHhhcCeEEEE
Confidence            56899999999999999999999988 666665432211   11111111 111111 1112222222234456888888


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc----cccccccCHhHH----------
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK----ENAYFLREVNHA----------  250 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~----~~~~~l~~~~~a----------  250 (441)
                      ..|..++...+.+.+...+          .++.+++||||||+.++.|++||..    .+++++ ...|.          
T Consensus        81 ~~v~~v~~~~~~F~v~t~~----------~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc-~~cdg~~~~k~v~Vi  149 (305)
T COG0492          81 DEVEKVELEGGPFKVKTDK----------GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC-ATCDGFFKGKDVVVI  149 (305)
T ss_pred             EEEEEEeecCceEEEEECC----------CeEEEeEEEECcCCcccCCCCCcchhhcCCceEEe-eecCccccCCeEEEE
Confidence            8899998776455555432          2589999999999999999888753    222222 22222          


Q ss_pred             ----------HHHHHHH----------------------HHh--ccc------ccCCC--CceeEeeCc---eEEE----
Q 013561          251 ----------QEIRKKL----------------------LLN--LML------SENPG--DTVQLFSKY---FVIT----  281 (441)
Q Consensus       251 ----------~~~~~~i----------------------~~~--~~~------a~~~G--~~~vE~a~~---v~V~----  281 (441)
                                ..+.+..                      ...  +.+      -...|  ..++.+...   .+..    
T Consensus       150 GgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~g  229 (305)
T COG0492         150 GGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDG  229 (305)
T ss_pred             cCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEece
Confidence                      1111110                      000  000      00001  112222210   0000    


Q ss_pred             ------------EccCCc--ccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561          282 ------------ITLSFL--VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       282 ------------il~~~~--~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                                  ++..+.  .+.|+|.||+.++| |+|+|||+||++...        .+++..|..+|..||.++.++|
T Consensus       230 vf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~T-svpGifAaGDv~~~~--------~rqi~ta~~~G~~Aa~~a~~~l  300 (305)
T COG0492         230 VFIAIGHLPNTELLKGLGVLDENGYIVVDEEMET-SVPGIFAAGDVADKN--------GRQIATAAGDGAIAALSAERYL  300 (305)
T ss_pred             EEEecCCCCchHHHhhccccCCCCcEEcCCCccc-CCCCEEEeEeeccCc--------ccEEeehhhhHHHHHHHHHHHh
Confidence                        000000  01289999999999 999999999999431        2378899999999999999988


Q ss_pred             c
Q 013561          348 G  348 (441)
Q Consensus       348 ~  348 (441)
                      .
T Consensus       301 ~  301 (305)
T COG0492         301 E  301 (305)
T ss_pred             h
Confidence            5

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.73  E-value=2.5e-17  Score=165.54  Aligned_cols=48  Identities=31%  Similarity=0.289  Sum_probs=43.3

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |+|.||++++| +.|+|||+|||+.         .|..+..|+.||+.+|.+|.++|.
T Consensus       303 g~i~vd~~~~t-~~~~vyaiGD~~~---------~~~~~~~A~~~g~~aa~~i~~~l~  350 (352)
T PRK12770        303 GEIVVDEKHMT-SREGVFAAGDVVT---------GPSKIGKAIKSGLRAAQSIHEWLD  350 (352)
T ss_pred             CcEeeCCCccc-CCCCEEEEccccc---------CcchHHHHHHHHHHHHHHHHHHHh
Confidence            67999999999 8999999999982         357899999999999999999885

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.72  E-value=2.3e-17  Score=173.95  Aligned_cols=114  Identities=12%  Similarity=0.042  Sum_probs=72.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc----chhhhhcCC--CCccccccchhhhhhhhcCCCCEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP----LLASTCVGT--LEFRSVAEPVSRIQTSLSSDPNSYF  182 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~----ll~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~  182 (441)
                      ..+|+||||||||++||.+|++.|++|+||++.  ++...    .++... +.  ....++...+...   +.+ .++.+
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~---~~~-~gv~i  283 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFI-SVPETEGPKLAAALEEH---VKE-YDVDI  283 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccC-CCCCCCHHHHHHHHHHH---HHH-CCCEE
Confidence            579999999999999999999999999999864  21110    000000 00  0111111122221   222 34555


Q ss_pred             EE-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          183 YL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       183 ~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      .. .+|.+++...+...+...+.         .++.||+||+|||+.|+.+++||.+
T Consensus       284 ~~~~~V~~I~~~~~~~~V~~~~g---------~~i~a~~vViAtG~~~r~~~ipG~~  331 (517)
T PRK15317        284 MNLQRASKLEPAAGLIEVELANG---------AVLKAKTVILATGARWRNMNVPGED  331 (517)
T ss_pred             EcCCEEEEEEecCCeEEEEECCC---------CEEEcCEEEECCCCCcCCCCCCCHH
Confidence            54 57889987655554443211         3689999999999999999999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.71  E-value=3.8e-16  Score=162.75  Aligned_cols=162  Identities=22%  Similarity=0.309  Sum_probs=112.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|+|+++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--~--------~-~d~~~~~~l~~~---l~-~~gV~i~~~~~v  236 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL--P--------N-EDAEVSKEIAKQ---YK-KLGVKILTGTKV  236 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC--C--------c-cCHHHHHHHHHH---HH-HCCCEEEECCEE
Confidence            5799999999999999999999999999999887654  1        1 111222222222   33 347777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+.....+     ++..++++|.||+|+|.+|+...+ +.+                             
T Consensus       237 ~~i~~~~~~~~v~~~~~~-----g~~~~i~~D~vi~a~G~~pn~~~l-~l~-----------------------------  281 (466)
T PRK07818        237 ESIDDNGSKVTVTVSKKD-----GKAQELEADKVLQAIGFAPRVEGY-GLE-----------------------------  281 (466)
T ss_pred             EEEEEeCCeEEEEEEecC-----CCeEEEEeCEEEECcCcccCCCCC-Cch-----------------------------
Confidence            888765554433211000     122468999999999999876421 110                             


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                       ..++++.            .. |+|.||+++|| +.|+|||+|||+      +   .+++++.|++||++||.||.
T Consensus       282 -~~g~~~~------------~~-g~i~vd~~~~T-s~p~IyAiGD~~------~---~~~l~~~A~~~g~~aa~~i~  334 (466)
T PRK07818        282 -KTGVALT------------DR-GAIAIDDYMRT-NVPHIYAIGDVT------A---KLQLAHVAEAQGVVAAETIA  334 (466)
T ss_pred             -hcCcEEC------------CC-CcEeeCCCccc-CCCCEEEEeecC------C---CcccHhHHHHHHHHHHHHHc
Confidence             0011111            11 78999999999 999999999998      2   36799999999999999997

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.71  E-value=4.7e-16  Score=162.41  Aligned_cols=162  Identities=21%  Similarity=0.231  Sum_probs=113.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+|||+++.+++.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~~d-~~~~~~~~~~---l~-~~gi~i~~~~~v  247 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL--A--------AAD-EQVAKEAAKA---FT-KQGLDIHLGVKI  247 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC--C--------cCC-HHHHHHHHHH---HH-HcCcEEEeCcEE
Confidence            5799999999999999999999999999999988654  1        111 1222222222   33 346777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+...+.+     +++.++++|.|++|+|.+|+...+...                      .       
T Consensus       248 ~~i~~~~~~v~v~~~~~~-----g~~~~i~~D~vl~a~G~~p~~~~l~~~----------------------~-------  293 (475)
T PRK06327        248 GEIKTGGKGVSVAYTDAD-----GEAQTLEVDKLIVSIGRVPNTDGLGLE----------------------A-------  293 (475)
T ss_pred             EEEEEcCCEEEEEEEeCC-----CceeEEEcCEEEEccCCccCCCCCCcH----------------------h-------
Confidence            888866555544321110     222478999999999999986532110                      0       


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |+|.||+++|| +.|+|||+|||+.         .|+++..|..||+.+|+||.
T Consensus       294 --~g~~~~------------~~-G~i~vd~~~~T-s~~~VyA~GD~~~---------~~~~~~~A~~~G~~aa~~i~  345 (475)
T PRK06327        294 --VGLKLD------------ER-GFIPVDDHCRT-NVPNVYAIGDVVR---------GPMLAHKAEEEGVAVAERIA  345 (475)
T ss_pred             --hCceeC------------CC-CeEeECCCCcc-CCCCEEEEEeccC---------CcchHHHHHHHHHHHHHHHc
Confidence              001111            11 78999999999 9999999999982         36799999999999999996

>TIGR03452 mycothione_red mycothione reductase

Probab=99.70  E-value=2.7e-16  Score=163.18  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=112.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||+|++.+++.  +        ..+ .++...+.+.   + + .++.++. ..+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--~--------~~d-~~~~~~l~~~---~-~-~gI~i~~~~~V  232 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--R--------HLD-EDISDRFTEI---A-K-KKWDIRLGRNV  232 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--c--------ccC-HHHHHHHHHH---H-h-cCCEEEeCCEE
Confidence            5799999999999999999999999999999987653  1        111 1222223222   2 2 2466654 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+++.+.+...+ +        .++++|.|++|+|.+|+...+....                             
T Consensus       233 ~~i~~~~~~v~v~~~~-g--------~~i~~D~vl~a~G~~pn~~~l~~~~-----------------------------  274 (452)
T TIGR03452       233 TAVEQDGDGVTLTLDD-G--------STVTADVLLVATGRVPNGDLLDAEA-----------------------------  274 (452)
T ss_pred             EEEEEcCCeEEEEEcC-C--------CEEEcCEEEEeeccCcCCCCcCchh-----------------------------
Confidence            8887655555554321 1        3789999999999999865322110                             


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.+            . |+|.||+++|| +.|+|||+|||+.         .+++++.|.+||+++|+||.
T Consensus       275 --~gl~~~~------------~-G~i~vd~~~~T-s~~~IyA~GD~~~---------~~~l~~~A~~~g~~~a~ni~  326 (452)
T TIGR03452       275 --AGVEVDE------------D-GRIKVDEYGRT-SARGVWALGDVSS---------PYQLKHVANAEARVVKHNLL  326 (452)
T ss_pred             --cCeeECC------------C-CcEeeCCCccc-CCCCEEEeecccC---------cccChhHHHHHHHHHHHHhc
Confidence              0112211            1 78999999999 9999999999992         35789999999999999997

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.69  E-value=5.8e-16  Score=165.86  Aligned_cols=167  Identities=19%  Similarity=0.241  Sum_probs=111.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||+||+.+++.  +        ..+ .++...+.+.   +.+..++.++.+ .|
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll--~--------~~d-~eis~~l~~~---ll~~~GV~I~~~~~V  377 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL--P--------LLD-ADVAKYFERV---FLKSKPVRVHLNTLI  377 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc--c--------cCC-HHHHHHHHHH---HhhcCCcEEEcCCEE
Confidence            5689999999999999999999999999999988654  1        111 1122222222   223356777655 67


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCC------CCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHE------PHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL  259 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~------~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~  259 (441)
                      .+|+..++  .+.+...+....+..      .+..++++|.|++|+|.+|+...+. .+.                    
T Consensus       378 ~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~-l~~--------------------  436 (659)
T PTZ00153        378 EYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLG-LDK--------------------  436 (659)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCC-chh--------------------
Confidence            88875442  244432110000000      0113689999999999999865321 100                    


Q ss_pred             hcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCC------CCCEEEecccccccccCCCCCCCchHHHHH
Q 013561          260 NLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPS------VEDVFALGDCAGFLEQTGKPVLPALAQVAE  333 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~------~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~  333 (441)
                       .         ++++            + + |+|.||++||| +      +|+|||+|||+      |   .+++++.|.
T Consensus       437 -~---------gi~~------------~-~-G~I~VDe~lqT-s~~~~~~v~~IYAiGDv~------g---~~~La~~A~  482 (659)
T PTZ00153        437 -L---------KIQM------------K-R-GFVSVDEHLRV-LREDQEVYDNIFCIGDAN------G---KQMLAHTAS  482 (659)
T ss_pred             -c---------CCcc------------c-C-CEEeECCCCCc-CCCCCCCCCCEEEEEecC------C---CccCHHHHH
Confidence             0         0011            0 1 78999999999 5      69999999998      3   368999999


Q ss_pred             HHHHHHHHHHH
Q 013561          334 RQGKYLAELFN  344 (441)
Q Consensus       334 ~qg~~aA~nI~  344 (441)
                      .||+.+|+||.
T Consensus       483 ~qg~~aa~ni~  493 (659)
T PTZ00153        483 HQALKVVDWIE  493 (659)
T ss_pred             HHHHHHHHHHc
Confidence            99999999997

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.65  E-value=3e-16  Score=162.54  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=69.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCC-CCccccccchhhhhhhhcCCCCEEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGT-LEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++||+||||||||++||..|++  .|++|+|||+.+..+  +++   .+|. +++......+..... +....++.|..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg--Glv---r~gvaP~~~~~k~v~~~~~~-~~~~~~v~~~~   98 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF--GLV---RSGVAPDHPETKNVTNQFSR-VATDDRVSFFG   98 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc--ceE---eeccCCCcchhHHHHHHHHH-HHHHCCeEEEc
Confidence            46799999999999999999986  799999999998654  232   2222 222211111122211 23345677766


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~  238 (441)
                      +..++.     .+.+..            ....||+||||||+.+ +.+++||.+
T Consensus        99 nv~vg~-----dvtl~~------------L~~~yDaVIlAtGa~~~~~l~IpG~d  136 (491)
T PLN02852         99 NVTLGR-----DVSLSE------------LRDLYHVVVLAYGAESDRRLGIPGED  136 (491)
T ss_pred             CEEECc-----cccHHH------------HhhhCCEEEEecCCCCCCCCCCCCCC
Confidence            533332     233322            1347999999999985 677899864

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.65  E-value=3.7e-16  Score=151.13  Aligned_cols=176  Identities=19%  Similarity=0.305  Sum_probs=129.9

Q ss_pred             hhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccc
Q 013561           83 ERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRS  162 (441)
Q Consensus        83 e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~  162 (441)
                      +.++++    +..+++.+.       |++++|||+|++||+++.-+.+.|.+||++|-.++++          +.++ .+
T Consensus       196 kkIVSS----tgALsL~~v-------Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~----------~~mD-~E  253 (506)
T KOG1335|consen  196 KKIVSS----TGALSLKEV-------PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG----------GVMD-GE  253 (506)
T ss_pred             ceEEec----CCccchhhC-------cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc----------cccC-HH
Confidence            345555    556777777       8899999999999999999999999999999888665          2223 34


Q ss_pred             cccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCC-EEE--EEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          163 VAEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKH-EVY--CETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       163 ~~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~-~v~--~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      +...+++.   +. ..++.|..+ +|.+++...+ .|.  +.+..+      ++..+++.|.|+|++|++|.+-++ |++
T Consensus       254 isk~~qr~---L~-kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~------~k~~tle~DvlLVsiGRrP~t~GL-gle  322 (506)
T KOG1335|consen  254 ISKAFQRV---LQ-KQGIKFKLGTKVTSATRNGDGPVEIEVENAKT------GKKETLECDVLLVSIGRRPFTEGL-GLE  322 (506)
T ss_pred             HHHHHHHH---HH-hcCceeEeccEEEEeeccCCCceEEEEEecCC------CceeEEEeeEEEEEccCcccccCC-Chh
Confidence            55555555   33 346777655 7888888766 444  444322      345689999999999999976532 110


Q ss_pred             cccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccc
Q 013561          239 ENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLE  318 (441)
Q Consensus       239 ~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~  318 (441)
                      +                              .|+|.            |.. |+|.||+.++| .+|+||++||+.    
T Consensus       323 ~------------------------------iGi~~------------D~r-~rv~v~~~f~t-~vP~i~~IGDv~----  354 (506)
T KOG1335|consen  323 K------------------------------IGIEL------------DKR-GRVIVNTRFQT-KVPHIYAIGDVT----  354 (506)
T ss_pred             h------------------------------ccccc------------ccc-cceeccccccc-cCCceEEecccC----
Confidence            0                              01111            112 89999999999 999999999999    


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          319 QTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       319 ~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                           ..|++|+.|..||-.+.+.|.
T Consensus       355 -----~gpMLAhkAeeegI~~VE~i~  375 (506)
T KOG1335|consen  355 -----LGPMLAHKAEEEGIAAVEGIA  375 (506)
T ss_pred             -----Ccchhhhhhhhhchhheeeec
Confidence                 468999999999999998886

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.64  E-value=2.2e-16  Score=149.39  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=92.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CC-CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KI-YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g-~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      ..+|+|||||-+|+.+|.++.+ .+ -+|.|+|+.++++|+|...-+.+|...-+.-......+   +.  .+...++.+
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~l---iP--~~a~wi~ek  113 (446)
T KOG3851|consen   39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASL---IP--KGATWIKEK  113 (446)
T ss_pred             ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccc---cc--CCcHHHHHH
Confidence            5689999999999999988865 33 37999999999999987654444543322222222222   22  245666788


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-----cccccccCHhHHHHHHHH
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-----ENAYFLREVNHAQEIRKK  256 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-----~~~~~l~~~~~a~~~~~~  256 (441)
                      |.+.++++++|.++.+           ++|.|||+|||+|-.-++..|+|..     .++....+........+.
T Consensus       114 v~~f~P~~N~v~t~gg-----------~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~  177 (446)
T KOG3851|consen  114 VKEFNPDKNTVVTRGG-----------EEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKE  177 (446)
T ss_pred             HHhcCCCcCeEEccCC-----------cEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHH
Confidence            9999999999987764           4899999999999998888888864     233334444444444443

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3.8e-15  Score=141.98  Aligned_cols=46  Identities=33%  Similarity=0.415  Sum_probs=41.2

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                      |.|.||+.-+| ++|+|||+||+..     +   .|.+...|++.||.+|+.+.+
T Consensus       319 ~KI~v~~~e~t-~vp~vyAvGDIl~-----~---kpELTPvAIqsGrlLa~Rlf~  364 (503)
T KOG4716|consen  319 GKIPVDDEEAT-NVPYVYAVGDILE-----D---KPELTPVAIQSGRLLARRLFA  364 (503)
T ss_pred             CccccChHHhc-CCCceEEecceec-----C---CcccchhhhhhchHHHHHHhc
Confidence            88999999999 9999999999992     3   588999999999999999874

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=1.6e-14  Score=138.25  Aligned_cols=211  Identities=17%  Similarity=0.119  Sum_probs=131.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cc------hh----------hhhcCCCCcccccc---
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PL------LA----------STCVGTLEFRSVAE---  165 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~l------l~----------~~~~g~~~~~~~~~---  165 (441)
                      ..+.+|||||-+|+++|++.+..|.+|.|+|..-.++-+    ++      .+          ..-+|...-.....   
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~   99 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK   99 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH
Confidence            357999999999999999999999999999976332211    00      00          00112211111111   


Q ss_pred             --------chhhhh---hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          166 --------PVSRIQ---TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       166 --------~~~~~~---~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                              .+.++.   +.......+.++.+...-+++.+-+|...++.         ...+.+.+++||||.+|..|+|
T Consensus       100 ~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~---------~~~Ytak~iLIAtGg~p~~PnI  170 (478)
T KOG0405|consen  100 VIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT---------KIVYTAKHILIATGGRPIIPNI  170 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe---------eEEEecceEEEEeCCccCCCCC
Confidence                    111111   11223457788888887777665555554431         2357899999999999999999


Q ss_pred             CCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCc-------eEEE-----EccCCccc-------------
Q 013561          235 KGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKY-------FVIT-----ITLSFLVR-------------  289 (441)
Q Consensus       235 pG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~-------v~V~-----il~~~~~~-------------  289 (441)
                      ||.+ ..+..+...+..+...    ...+.+ +|+.+||+|.-       ..+.     +|..||+.             
T Consensus       171 pG~E-~gidSDgff~Lee~Pk----r~vvvG-aGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g  244 (478)
T KOG0405|consen  171 PGAE-LGIDSDGFFDLEEQPK----RVVVVG-AGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG  244 (478)
T ss_pred             Cchh-hccccccccchhhcCc----eEEEEc-cceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence            9974 2222222222222222    223333 68888888710       0000     11111110             


Q ss_pred             -----------------------------------------------C------------CceeeCCCcccCCCCCEEEe
Q 013561          290 -----------------------------------------------L------------SQIGVDEWLRAPSVEDVFAL  310 (441)
Q Consensus       290 -----------------------------------------------l------------G~I~Vd~~lqt~~~~~VfA~  310 (441)
                                                                     +            |.|.||+|.+| |+|+|||+
T Consensus       245 invh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~av  323 (478)
T KOG0405|consen  245 INVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAV  323 (478)
T ss_pred             eeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEe
Confidence                                                           0            89999999999 99999999


Q ss_pred             cccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          311 GDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       311 GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||++      |   ...+...|+..|+.+|+.+.
T Consensus       324 GDv~------g---k~~LTPVAiaagr~la~rlF  348 (478)
T KOG0405|consen  324 GDVT------G---KINLTPVAIAAGRKLANRLF  348 (478)
T ss_pred             cccc------C---cEecchHHHhhhhhHHHHhh
Confidence            9999      4   35678889999999998887

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.52  E-value=1.9e-13  Score=154.00  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=78.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      .++|+|||||||||+||..+++.|++|+|||+.+..+  +.++... ...+.......+.+..+.+....++.+.. ++|
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G--G~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V  239 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG--GSLLSEA-ETIDGKPAADWAAATVAELTAMPEVTLLPRTTA  239 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC--Ceeeccc-cccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence            5689999999999999999999999999999988764  2221111 01110000111122222244444566654 577


Q ss_pred             EEEeCCCCEEEEEecCCC-----CCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccc
Q 013561          188 IGIDTDKHEVYCETVNNG-----KLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFL  244 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~-----~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l  244 (441)
                      .+++.......+......     .........++.||.||||||+.++.+++||.+ ++++..
T Consensus       240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~  302 (985)
T TIGR01372       240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLA  302 (985)
T ss_pred             EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEc
Confidence            777653322222211000     000000112588999999999999999999975 455443

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.50  E-value=2.2e-13  Score=138.81  Aligned_cols=215  Identities=20%  Similarity=0.154  Sum_probs=137.4

Q ss_pred             EEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccc--cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          112 VVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFT--PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       112 VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~--~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      ++|||+|++|+++|..|.+  .+.+|+++..++...|.  ++.+.+..+....+....... .   ..+.....+...+|
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~v   76 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-F---NRATGIDVRTGTEV   76 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-h---HHhhCCEEeeCCEE
Confidence            5899999999999998876  45688877777655443  333333333333322222222 1   11112334445689


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH--hccccc
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL--NLMLSE  265 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~--~~~~a~  265 (441)
                      ..+|.+.+.+.+.++            ++.||+|++|||++|..++ .......+.++..+++..+......  .+.+.+
T Consensus        77 ~~id~~~~~v~~~~g------------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG  143 (415)
T COG0446          77 TSIDPENKVVLLDDG------------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVG  143 (415)
T ss_pred             EEecCCCCEEEECCC------------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhccCeEEEEC
Confidence            999999999987763            6899999999999998876 2223567788999998888765532  111111


Q ss_pred             CCCCceeEeeC--------------------------------------ceE---------------------EE-----
Q 013561          266 NPGDTVQLFSK--------------------------------------YFV---------------------IT-----  281 (441)
Q Consensus       266 ~~G~~~vE~a~--------------------------------------~v~---------------------V~-----  281 (441)
                       +|..|+|+|.                                      +++                     +.     
T Consensus       144 -~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  222 (415)
T COG0446         144 -AGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE  222 (415)
T ss_pred             -CcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence             2222211110                                      000                     01     


Q ss_pred             --------EccCCcc--------------cCCceeeCCCcccCC-CCCEEEecccccccccC-CCCCCCchHHHHHHHHH
Q 013561          282 --------ITLSFLV--------------RLSQIGVDEWLRAPS-VEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGK  337 (441)
Q Consensus       282 --------il~~~~~--------------~lG~I~Vd~~lqt~~-~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~  337 (441)
                              +.+...+              ..|.|.||+++++ + .++|||+|||+.++... +.....+.++.|..+++
T Consensus       223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~-~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~  301 (415)
T COG0446         223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGT-SKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR  301 (415)
T ss_pred             EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEcccccc-CCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence                    0000000              0168999999999 6 89999999999887543 33345788999999999


Q ss_pred             HHHHHHHH
Q 013561          338 YLAELFNK  345 (441)
Q Consensus       338 ~aA~nI~~  345 (441)
                      .++.++..
T Consensus       302 i~~~~~~~  309 (415)
T COG0446         302 IAAENIAG  309 (415)
T ss_pred             HHHHHhcc
Confidence            99999984

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=4.4e-13  Score=128.50  Aligned_cols=118  Identities=12%  Similarity=0.037  Sum_probs=67.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc---hhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL---LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l---l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      +.+.+|+||||||||-++|.+.+++|.+.-|+-  ++|+-+.+   -.+...+.++-+ -......+..+.++ -.+.+.
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENfIsv~~te-Gpkl~~ale~Hv~~-Y~vDim  284 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENFISVPETE-GPKLAAALEAHVKQ-YDVDVM  284 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhheecccccc-chHHHHHHHHHHhh-cCchhh
Confidence            447899999999999999999999998877662  23332221   000011111111 01111122222222 233333


Q ss_pred             EE-EEEEEeCC-----CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc
Q 013561          184 LA-SCIGIDTD-----KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE  239 (441)
Q Consensus       184 ~~-~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~  239 (441)
                      +. +.+.+.+.     .-+|++.++           -.+....+||+||++-+..++||.++
T Consensus       285 n~qra~~l~~a~~~~~l~ev~l~nG-----------avLkaktvIlstGArWRn~nvPGE~e  335 (520)
T COG3634         285 NLQRASKLEPAAVEGGLIEVELANG-----------AVLKARTVILATGARWRNMNVPGEDE  335 (520)
T ss_pred             hhhhhhcceecCCCCccEEEEecCC-----------ceeccceEEEecCcchhcCCCCchHH
Confidence            22 34444432     224445443           26789999999999999999999763

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=7.7e-12  Score=113.41  Aligned_cols=115  Identities=14%  Similarity=0.049  Sum_probs=78.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc---cc--------hhhhhcCCCCccccccchhhhhhhhcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT---PL--------LASTCVGTLEFRSVAEPVSRIQTSLSSD  177 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~---~l--------l~~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (441)
                      ..+|+|||+|||+.++|.++++...+-+|||-.---...   .+        .|+++-|..-+     .+.+.......+
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~-----~l~d~mrkqs~r   82 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGP-----ELMDKMRKQSER   82 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccH-----HHHHHHHHHHHh
Confidence            358999999999999999999988899999863211100   00        12222222111     122222223444


Q ss_pred             CCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          178 PNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       178 ~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      .+.+++..+|.++|.+.+-+.+...          .+.+.+|.+|+|||+..+...+||..
T Consensus        83 ~Gt~i~tEtVskv~~sskpF~l~td----------~~~v~~~avI~atGAsAkRl~~pg~g  133 (322)
T KOG0404|consen   83 FGTEIITETVSKVDLSSKPFKLWTD----------ARPVTADAVILATGASAKRLHLPGEG  133 (322)
T ss_pred             hcceeeeeehhhccccCCCeEEEec----------CCceeeeeEEEecccceeeeecCCCC
Confidence            5778888899999999988877663          24789999999999999888888874

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.26  E-value=1.5e-10  Score=114.16  Aligned_cols=53  Identities=13%  Similarity=0.038  Sum_probs=42.8

Q ss_pred             CceeeC---C-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVD---E-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd---~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.++   + +|+...+|++|.+|.+..+...+|+    =.-++|...|..|++.+.+.+
T Consensus       351 GGV~~~eid~kTmesk~vPGLyf~GEvlDv~g~tGG----YN~q~A~asG~~Ag~~~~~~~  407 (408)
T COG2081         351 GGVDTKEIDSKTMESKKVPGLYFAGEVLDVTGWTGG----YNFQWAWASGWAAGQGAAAWL  407 (408)
T ss_pred             CceehhhcCHHHHHhhcCCCcEEEEEEEEeccCCCc----HHHHHHHHHHHHHHHhhhhhc
Confidence            777654   3 4888889999999999988766665    378999999999999987654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.26  E-value=1.3e-11  Score=128.06  Aligned_cols=127  Identities=15%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch----------------------hh-h-------hcC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL----------------------AS-T-------CVG  156 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll----------------------~~-~-------~~g  156 (441)
                      .+.++|+|||||++||.||+.|.+.|++|+|||+++..+-....                      +. .       ..+
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~   87 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG   87 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence            34689999999999999999999999999999998866411100                      00 0       000


Q ss_pred             CCCc---cc------------cccchhhhhhhhcCCCCEE---EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeC
Q 013561          157 TLEF---RS------------VAEPVSRIQTSLSSDPNSY---FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAY  218 (441)
Q Consensus       157 ~~~~---~~------------~~~~~~~~~~~~~~~~~v~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~y  218 (441)
                      ..++   ..            ....+.+..+.+.+..++.   ..+.+|+.|+...+.+.+.....+     +...+..|
T Consensus        88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----~~~~~~~~  162 (461)
T PLN02172         88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----GFSKDEIF  162 (461)
T ss_pred             CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----CceEEEEc
Confidence            0000   00            0011222222223222322   235689999887776666543211     11225679


Q ss_pred             CEEEEcCC--CCcCCCCCCCcc
Q 013561          219 DKLVIAAG--AEPLTFGIKGVK  238 (441)
Q Consensus       219 D~LvlAtG--s~p~~~~ipG~~  238 (441)
                      |+||||||  +.|+.|.+||.+
T Consensus       163 d~VIvAtG~~~~P~~P~ipG~~  184 (461)
T PLN02172        163 DAVVVCNGHYTEPNVAHIPGIK  184 (461)
T ss_pred             CEEEEeccCCCCCcCCCCCCcc
Confidence            99999999  679999999975

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.22  E-value=1.3e-11  Score=126.89  Aligned_cols=166  Identities=16%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhh----------------------cCC------CCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTC----------------------VGT------LEF  160 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~----------------------~g~------~~~  160 (441)
                      ..+++|||+||||..+|.++++.|.+|.+||+...++- .|++..|                      .|.      .++
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGG-tCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~   82 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG-TCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCc-eEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence            57899999999999999999999999999999964431 2211111                      111      111


Q ss_pred             cccccchhhh-------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          161 RSVAEPVSRI-------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       161 ~~~~~~~~~~-------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      +.+....+..       ...+.+..+++++.+...-++  .++|.+...         +.+++.+|++||||||+|..|+
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~---------~~~~~~a~~iiIATGS~p~~~~  151 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE---------DKETITADNIIIATGSRPRIPP  151 (454)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC---------CceEEEeCEEEEcCCCCCcCCC
Confidence            1111111111       112344568888888887766  566766652         1248999999999999999999


Q ss_pred             CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----ceEEE-------EccCCcccC
Q 013561          234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----YFVIT-------ITLSFLVRL  290 (441)
Q Consensus       234 ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----~v~V~-------il~~~~~~l  290 (441)
                      +||.++.-  +-+.+++..+. .+.+.+.+.+ +|+.|+|+|.     +.+||       +|+.+|+++
T Consensus       152 ~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiG-gG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei  216 (454)
T COG1249         152 GPGIDGAR--ILDSSDALFLL-ELPKSLVIVG-GGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEI  216 (454)
T ss_pred             CCCCCCCe--EEechhhcccc-cCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHH
Confidence            88875321  22233333333 3344555666 7999999983     35555       667777665

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.22  E-value=3.2e-11  Score=118.14  Aligned_cols=219  Identities=20%  Similarity=0.258  Sum_probs=138.2

Q ss_pred             cEEEECCCHHHHHHHHhhc--cCCCeEEEEcCCCCcccc--cchhhhh-cCCCC------c-------cccccchhhhh-
Q 013561          111 RVVVLGTGWGACRFLKGID--TKIYDAVCISPRNHMVFT--PLLASTC-VGTLE------F-------RSVAEPVSRIQ-  171 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~--~~g~~Vtvie~~~~~~~~--~ll~~~~-~g~~~------~-------~~~~~~~~~~~-  171 (441)
                      --+|||+|.+..++++...  ..+.+|.+|..++...|.  |+..+.- ++.+.      +       +++........ 
T Consensus       180 p~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ffv  259 (659)
T KOG1346|consen  180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFV  259 (659)
T ss_pred             ceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCccee
Confidence            4699999999888877665  457899999888877654  2211111 00000      0       01111110000 


Q ss_pred             --hhh--cCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC-CCCc----cccc
Q 013561          172 --TSL--SSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG-IKGV----KENA  241 (441)
Q Consensus       172 --~~~--~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~-ipG~----~~~~  241 (441)
                        +.+  ....++-+.++ +|+.||.+.+.|++.++           .+|.||.++||||.+|.... +...    .+.+
T Consensus       260 speDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG-----------~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~ki  328 (659)
T KOG1346|consen  260 SPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDG-----------TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKI  328 (659)
T ss_pred             ChhHCcccccCceEEEeccceEEeecccCeEEecCC-----------cEeehhheeeecCcCcccchhhhhcCHHhhhhe
Confidence              001  12356666676 79999999999999885           38999999999999997664 2221    2456


Q ss_pred             ccccCHhHHHHHHHHHHHh--cccccCCCCceeEee---------CceEEE-----------Ecc---------------
Q 013561          242 YFLREVNHAQEIRKKLLLN--LMLSENPGDTVQLFS---------KYFVIT-----------ITL---------------  284 (441)
Q Consensus       242 ~~l~~~~~a~~~~~~i~~~--~~~a~~~G~~~vE~a---------~~v~V~-----------il~---------------  284 (441)
                      ..++...|..++..-+.+.  +.+.+ .|..|-|++         .+++|.           |||               
T Consensus       329 t~fr~p~DF~rlek~~aek~siTIiG-nGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~G  407 (659)
T KOG1346|consen  329 TYFRYPADFKRLEKGLAEKQSITIIG-NGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGG  407 (659)
T ss_pred             eEEecchHHHHHHHhhhhcceEEEEc-CcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcC
Confidence            6788888888877654322  22222 344443333         001110           000               


Q ss_pred             ----------------------------------------------------CCcccCCceeeCCCcccCCCCCEEEecc
Q 013561          285 ----------------------------------------------------SFLVRLSQIGVDEWLRAPSVEDVFALGD  312 (441)
Q Consensus       285 ----------------------------------------------------~~~~~lG~I~Vd~~lqt~~~~~VfA~GD  312 (441)
                                                                          .+|..+|.+.||..|+.  ..|||++||
T Consensus       408 V~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGd  485 (659)
T KOG1346|consen  408 VDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA--RENVWVAGD  485 (659)
T ss_pred             ceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec--ccceeeecc
Confidence                                                                01233388999999998  789999999


Q ss_pred             cccccccC-CCCCCCchHHHHHHHHHHHHHHHH
Q 013561          313 CAGFLEQT-GKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       313 ~a~~~~~~-G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ++.+.|.. |. +.-....+|+-.||+|++||.
T Consensus       486 aacF~D~~LGr-RRVehhdhavvSGRLAGENMt  517 (659)
T KOG1346|consen  486 AACFEDGVLGR-RRVEHHDHAVVSGRLAGENMT  517 (659)
T ss_pred             hhhhhcccccc-eeccccccceeeceecccccc
Confidence            99998754 43 556678889999999999997

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=99.12  E-value=5.4e-13  Score=110.54  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhccccc
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESE   92 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~   92 (441)
                      -|+.++++|+ |.+|++++.++|+||++||||||++  ||.+|.++ .. .++.|+.+++++.|++.+
T Consensus        44 ~~i~~i~~g~-~~~A~~~i~~~np~p~vcGrvCp~p~~Ce~~C~r~-~~-~pV~I~~l~r~~~d~~~~  108 (111)
T PF14691_consen   44 EYIRLIREGN-FKEAYELIREDNPFPAVCGRVCPHPKQCESACRRG-KG-EPVAIRALERFIADYALE  108 (111)
T ss_dssp             HHHHHHHCT--HHHHHHHHHHH-TTHHHHHHH--GGGSGGGG-GGG-ST--S--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCC-HHHHHHHHHHhCCCcccccCCCCCcchHHHHccCC-CC-CCCcHHHHHHHHHHHHHH
Confidence            4889999999 9999999999999999999999998  99999999 45 577888999999997766

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.08  E-value=7.2e-11  Score=109.52  Aligned_cols=130  Identities=18%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             cEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEEEEEEE
Q 013561          111 RVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      +.+|||||.||++||.+|+.  ...+|.++..++..--...+..+. -.++.-++.+ ....+   .+..+  +|+.. |
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~-~ylekfdv~eq~~~el---g~~f~--~~~~~-v   73 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIG-QYLEKFDVKEQNCHEL---GPDFR--RFLND-V   73 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHH-HHHHhcCccccchhhh---cccHH--HHHHh-h
Confidence            46899999999999999985  346899998876331000000000 0001001110 01111   11101  23333 6


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL  259 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~  259 (441)
                      ..++.++..+.++++           .++.|++|++|+|++|... .+|.+..+..+++.+.+..++..+..
T Consensus        74 ~~~~s~ehci~t~~g-----------~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~k  133 (334)
T KOG2755|consen   74 VTWDSSEHCIHTQNG-----------EKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVK  133 (334)
T ss_pred             hhhccccceEEecCC-----------ceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhh
Confidence            777888888888774           3789999999999999765 34456777888888888888877643

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.01  E-value=5.7e-10  Score=114.62  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhc-cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGID-TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~-~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .+++|+||||||||+++|..|. +.|++|+|||+.+..+  +++   .+|...++.....+.+.........++.|..+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg--GLv---R~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv  112 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY--GLI---RYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNV  112 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc--cEE---EEeCCCCCccHHHHHHHHHHHHhhCCeEEEeee
Confidence            4779999999999999999764 6799999999999775  332   223332221112222221111223567776432


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      -++.|     ++++.            ....||+||+|+|+.+..
T Consensus       113 ~VG~D-----vt~ee------------L~~~YDAVIlAtGA~~l~  140 (506)
T PTZ00188        113 HVGVD-----LKMEE------------LRNHYNCVIFCCGASEVS  140 (506)
T ss_pred             EecCc-----cCHHH------------HHhcCCEEEEEcCCCCCC
Confidence            22221     22221            134799999999988543

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.98  E-value=1.7e-10  Score=121.56  Aligned_cols=123  Identities=16%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----------h-hhhc----------CCCCc------
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----------A-STCV----------GTLEF------  160 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----------~-~~~~----------g~~~~------  160 (441)
                      .|||+|||||++||.+|+.|...|+++|+||+++.++-.-..           + ....          ..+.+      
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            369999999999999999999999999999999877521100           0 0000          00000      


Q ss_pred             ---cccccchhhhhhhhcCCCCEEEEEEEEEEEeCCC-----CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC--CcC
Q 013561          161 ---RSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDK-----HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA--EPL  230 (441)
Q Consensus       161 ---~~~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs--~p~  230 (441)
                         .++...++...+.+.-...++| +++|++++...     ....+....+      ++..+..||+||||||.  .|+
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~f-nt~V~~v~~~~d~~~~~~W~V~~~~~------g~~~~~~fD~VvvatG~~~~P~  153 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRF-NTEVVSVERDPDFSATGKWEVTTEND------GKEETEEFDAVVVATGHFSKPN  153 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEET-SEEEEEEEEETTTT-ETEEEEEETTT------TEEEEEEECEEEEEE-SSSCES
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEE-ccEEeEeeeccccCCCceEEEEeecC------CeEEEEEeCeEEEcCCCcCCCC
Confidence               1122222222222222223333 45677776432     3455544221      23345679999999994  688


Q ss_pred             CCC--CCCcc
Q 013561          231 TFG--IKGVK  238 (441)
Q Consensus       231 ~~~--ipG~~  238 (441)
                      .|.  +||.+
T Consensus       154 ~P~~~~~G~e  163 (531)
T PF00743_consen  154 IPEPSFPGLE  163 (531)
T ss_dssp             B-----CTGG
T ss_pred             CChhhhhhhh
Confidence            884  89975

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.93  E-value=1.1e-09  Score=114.33  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ..+|+||||||||++||..+++.|.+|+|||++
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            468999999999999999999999999999986

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.92  E-value=3.4e-09  Score=108.11  Aligned_cols=48  Identities=15%  Similarity=0.129  Sum_probs=35.0

Q ss_pred             Cceee---CC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHH
Q 013561          291 SQIGV---DE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAEL  342 (441)
Q Consensus       291 G~I~V---d~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~n  342 (441)
                      |.|.+   |+ +|++..+||+|++|.+-.+..+.|+    =.-|+|...|..|+++
T Consensus       358 GGV~~~eid~~TmeSk~~~gLyf~GEvLDvdG~~GG----YNLq~AwsSG~~Ag~~  409 (409)
T PF03486_consen  358 GGVDLKEIDPKTMESKLVPGLYFAGEVLDVDGPCGG----YNLQWAWSSGYLAGKY  409 (409)
T ss_dssp             EEE-GGGB-TTT-BBSSSTTEEE-GGGBSEEE-TTT----HHHHHHHHHHHHHHH-
T ss_pred             CCcCHHHCCHhhhcccCCCCeEEEEEEEEeccCcCc----hhHhHHHHHHHHhhCC
Confidence            77765   44 6888889999999999988766665    3789999999999875

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN02463 lycopene beta cyclase

Probab=98.91  E-value=7.4e-08  Score=99.67  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----c---chh-----h-hhcCCCC-------c--cccccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----P---LLA-----S-TCVGTLE-------F--RSVAEP  166 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~---ll~-----~-~~~g~~~-------~--~~~~~~  166 (441)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+...+.    .   .+.     . +......       .  .....+
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~  107 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP  107 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence            469999999999999999999999999999997643221    0   000     0 0000000       0  000000


Q ss_pred             --------hhh-hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          167 --------VSR-IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       167 --------~~~-~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                              +.+ +.+.. ...++.+..++|++|+..++.+.+...++         .++.+|+||.|+|....
T Consensus       108 y~~V~R~~L~~~Ll~~~-~~~GV~~~~~~V~~I~~~~~~~~V~~~dG---------~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        108 YGRVNRKKLKSKMLERC-IANGVQFHQAKVKKVVHEESKSLVVCDDG---------VKIQASLVLDATGFSRC  170 (447)
T ss_pred             ceeEEHHHHHHHHHHHH-hhcCCEEEeeEEEEEEEcCCeEEEEECCC---------CEEEcCEEEECcCCCcC
Confidence                    111 11111 23478888889999987766655543211         37899999999997654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.84  E-value=7.2e-09  Score=107.18  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=73.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcc-------cccc---hhhhhcC---CCC-----cc---ccc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMV-------FTPL---LASTCVG---TLE-----FR---SVA  164 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~-------~~~l---l~~~~~g---~~~-----~~---~~~  164 (441)
                      ++..+|+|||||++||.+|..|.+.|.. ++|+|+++..+       |..+   .+....+   .+.     +.   .+.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~   85 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK   85 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence            3467999999999999999999999998 99999997554       2111   0000001   000     00   011


Q ss_pred             cchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC--CCcCCCCCCCccc
Q 013561          165 EPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG--AEPLTFGIKGVKE  239 (441)
Q Consensus       165 ~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG--s~p~~~~ipG~~~  239 (441)
                      ..+....+.+.....+.|... ++...+.+.+..++....+.       ..++.+|+||+|||  +.|+.|.++|.++
T Consensus        86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-------~~~~~a~~vV~ATG~~~~P~iP~~~G~~~  156 (443)
T COG2072          86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-------TGELTADFVVVATGHLSEPYIPDFAGLDE  156 (443)
T ss_pred             HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-------eeeEecCEEEEeecCCCCCCCCCCCCccC
Confidence            112222222222233344332 33444444455555543221       11277999999999  5799999999863

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=1.2e-08  Score=106.64  Aligned_cols=152  Identities=15%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcC------CCCccc----ccchhhh-----------------hcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISP------RNHMVF----TPLLAST-----------------CVGTLEFR  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~------~~~~~~----~~ll~~~-----------------~~g~~~~~  161 (441)
                      ..+|+||||||||+++|..+++.|.+|+|||+      ...++.    .++.|..                 ..|.. ..
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~-~~   82 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH-VD   82 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc-CC
Confidence            45899999999999999999999999999998      122211    1111110                 00110 00


Q ss_pred             ccccch--------------hhhhhhhcCCCCEEEEEEEEEEEeCC--CCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          162 SVAEPV--------------SRIQTSLSSDPNSYFYLASCIGIDTD--KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       162 ~~~~~~--------------~~~~~~~~~~~~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                      .....+              +.....+.+..++.++.+++..++..  ..+|.+....         ..++.||+|||||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~---------~~~~~~d~lViAT  153 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGED---------ETVITAKHVIIAT  153 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCC---------CeEEEeCEEEEeC
Confidence            000000              01111123446889999988777643  3455554311         1378999999999


Q ss_pred             CCCcCCC-CCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561          226 GAEPLTF-GIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS  275 (441)
Q Consensus       226 Gs~p~~~-~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a  275 (441)
                      |+.|+.+ .++.....++   +.+++..+.. ..+.+.+.+ +|..++|+|
T Consensus       154 Gs~p~~~p~~~~~~~~~~---~~~~~~~~~~-~~~~vvVvG-gG~~g~E~A  199 (475)
T PRK06327        154 GSEPRHLPGVPFDNKIIL---DNTGALNFTE-VPKKLAVIG-AGVIGLELG  199 (475)
T ss_pred             CCCCCCCCCCCCCCceEE---CcHHHhcccc-cCCeEEEEC-CCHHHHHHH
Confidence            9998654 2332112222   2223322211 112334444 677888877

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.80  E-value=2.8e-08  Score=102.96  Aligned_cols=157  Identities=22%  Similarity=0.293  Sum_probs=111.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.  +        .. ..++...+.+.   +. ..++.++.+ .+
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~--------~~-~~~~~~~~~~~---l~-~~GI~i~~~~~V  221 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL--P--------RE-EPSVAALAKQY---ME-EDGITFLLNAHT  221 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC--C--------CC-CHHHHHHHHHH---HH-HcCCEEEcCCEE
Confidence            5799999999999999999999999999999988654  1        11 11121122222   22 346777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ++++.+.+.+.+...  +        .+++||.||+|+|.+|+...+ +.+ +                           
T Consensus       222 ~~i~~~~~~v~v~~~--g--------~~i~~D~viva~G~~p~~~~l-~l~-~---------------------------  262 (438)
T PRK07251        222 TEVKNDGDQVLVVTE--D--------ETYRFDALLYATGRKPNTEPL-GLE-N---------------------------  262 (438)
T ss_pred             EEEEecCCEEEEEEC--C--------eEEEcCEEEEeeCCCCCcccC-Cch-h---------------------------
Confidence            888876666655431  1        378999999999999985421 110 0                           


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++            +.. |.|.||+++|| +.|+|||+|||+      |   .+.++..|..||+.++.++.
T Consensus       263 --~~~~~------------~~~-g~i~vd~~~~t-~~~~IyaiGD~~------~---~~~~~~~a~~~~~~~~~~~~  314 (438)
T PRK07251        263 --TDIEL------------TER-GAIKVDDYCQT-SVPGVFAVGDVN------G---GPQFTYISLDDFRIVFGYLT  314 (438)
T ss_pred             --cCcEE------------CCC-CcEEECCCccc-CCCCEEEeeecC------C---CcccHhHHHHHHHHHHHHHc
Confidence              00011            111 78999999999 999999999998      2   36789999999999998886

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.78  E-value=4.2e-08  Score=102.17  Aligned_cols=158  Identities=18%  Similarity=0.250  Sum_probs=112.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++..          . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~----------~-~d~e~~~~l~~~---L~-~~GI~i~~~~~V  234 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP----------G-EDEDIAHILREK---LE-NDGVKIFTGAAL  234 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc----------c-ccHHHHHHHHHH---HH-HCCCEEEECCEE
Confidence            57999999999999999999999999999999886541          0 111222222222   33 346777665 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+...        ++..++++|.|++|+|.+|+...+. .+.                            
T Consensus       235 ~~i~~~~~~v~~~~~--------g~~~~i~~D~vivA~G~~p~~~~l~-l~~----------------------------  277 (458)
T PRK06912        235 KGLNSYKKQALFEYE--------GSIQEVNAEFVLVSVGRKPRVQQLN-LEK----------------------------  277 (458)
T ss_pred             EEEEEcCCEEEEEEC--------CceEEEEeCEEEEecCCccCCCCCC-chh----------------------------
Confidence            888876666655432        1123689999999999998764321 100                            


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.+              +.|.||+++|| +.|||||+|||+      +   .++++..|++||+++|.||.
T Consensus       278 --~gv~~~~--------------~gi~Vd~~~~t-s~~~VyA~GD~~------~---~~~la~~A~~~g~~aa~~~~  328 (458)
T PRK06912        278 --AGVQFSN--------------KGISVNEHMQT-NVPHIYACGDVI------G---GIQLAHVAFHEGTTAALHAS  328 (458)
T ss_pred             --cCceecC--------------CCEEeCCCeec-CCCCEEEEeecC------C---CcccHHHHHHHHHHHHHHHc
Confidence              0011111              33999999999 999999999999      2   46899999999999999986

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.77  E-value=1.1e-08  Score=110.14  Aligned_cols=33  Identities=12%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ..+|+|||+|++|+.+|..+++.|.+|+|||+.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            458999999999999999999999999999975

>TIGR03452 mycothione_red mycothione reductase

Probab=98.74  E-value=3.4e-08  Score=102.66  Aligned_cols=147  Identities=14%  Similarity=0.116  Sum_probs=84.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc----ccchhhhh----------------cCCC------Cccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF----TPLLASTC----------------VGTL------EFRS  162 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~----~~ll~~~~----------------~g~~------~~~~  162 (441)
                      ..+|+|||+||+|..+|...  .|.+|+|||++. ++-    .+|.|...                .|..      +...
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~   78 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD   78 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence            35899999999999987554  599999999853 221    12211110                0110      1111


Q ss_pred             cccch-----hhhh---hhh-c--CCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          163 VAEPV-----SRIQ---TSL-S--SDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       163 ~~~~~-----~~~~---~~~-~--~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      +....     ..+.   ..+ .  +..+++++.+...-+  +.++|.+.++           .++.||+||||||++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~~g-----------~~~~~d~lIiATGs~p~~  145 (452)
T TIGR03452        79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTGDG-----------EEITGDQIVIAAGSRPYI  145 (452)
T ss_pred             HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEECCC-----------cEEEeCEEEEEECCCCCC
Confidence            11111     0110   001 1  225788888766544  3566665431           268999999999999988


Q ss_pred             CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561          232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS  275 (441)
Q Consensus       232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a  275 (441)
                      |++++. .+ ..+.+.+++.++.+. .+.+.+.+ +|..++|+|
T Consensus       146 p~~~~~-~~-~~~~~~~~~~~l~~~-~k~vvVIG-gG~ig~E~A  185 (452)
T TIGR03452       146 PPAIAD-SG-VRYHTNEDIMRLPEL-PESLVIVG-GGYIAAEFA  185 (452)
T ss_pred             CCCCCC-CC-CEEEcHHHHHhhhhc-CCcEEEEC-CCHHHHHHH
Confidence            764432 12 235677777766542 23344444 678888887

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.73  E-value=6e-08  Score=101.40  Aligned_cols=104  Identities=12%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||||++.+++.  +        . .+.++...+.+.   +.+ . +.++. ..+
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il--~--------~-~d~~~~~~~~~~---l~~-~-v~i~~~~~v  237 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI--P--------A-ADKDIVKVFTKR---IKK-Q-FNIMLETKV  237 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC--C--------c-CCHHHHHHHHHH---Hhh-c-eEEEcCCEE
Confidence            5799999999999999999999999999999988654  1        1 111222222222   333 2 55544 467


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..++...+.+.+...+.+     ++..++++|.||+|+|.+|+...
T Consensus       238 ~~i~~~~~~~~v~~~~~~-----~~~~~i~~D~vi~a~G~~pn~~~  278 (471)
T PRK06467        238 TAVEAKEDGIYVTMEGKK-----APAEPQRYDAVLVAVGRVPNGKL  278 (471)
T ss_pred             EEEEEcCCEEEEEEEeCC-----CcceEEEeCEEEEeecccccCCc
Confidence            777655555544321110     11246899999999999998763

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.73  E-value=2.3e-08  Score=97.66  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .++|.|||+||||+.+|..|.+  .+..|+|+|+.+-.. +..-++++...++-+.+...+.+    ..+.+...|..+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF-GLvRyGVAPDHpEvKnvintFt~----~aE~~rfsf~gNv   94 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF-GLVRYGVAPDHPEVKNVINTFTK----TAEHERFSFFGNV   94 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc-ceeeeccCCCCcchhhHHHHHHH----HhhccceEEEecc
Confidence            4499999999999999988876  468999999998543 22223333222222222222222    3444555665542


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      -++     +.+.+..            .+-.||+||||.|+. ++.++|||.+
T Consensus        95 ~vG-----~dvsl~e------------L~~~ydavvLaYGa~~dR~L~IPGe~  130 (468)
T KOG1800|consen   95 KVG-----RDVSLKE------------LTDNYDAVVLAYGADGDRRLDIPGEE  130 (468)
T ss_pred             eec-----ccccHHH------------HhhcccEEEEEecCCCCcccCCCCcc
Confidence            222     2233332            245799999999986 8999999975

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.72  E-value=4.6e-08  Score=100.44  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=73.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc----c--------c----c---hhhhhcCCCCc---cc--
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF----T--------P----L---LASTCVGTLEF---RS--  162 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~----~--------~----l---l~~~~~g~~~~---~~--  162 (441)
                      ++.++|+|||+|+|||.+|+.|.+.|++|+|+|+.+.++.    .        .    +   ++..+.+..++   +.  
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~   83 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP   83 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence            3478999999999999999999999999999999987641    1        1    0   11111111111   00  


Q ss_pred             -c---ccchhhhhhhhcCCC----CEEEEEEEEEEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC--cCC
Q 013561          163 -V---AEPVSRIQTSLSSDP----NSYFYLASCIGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE--PLT  231 (441)
Q Consensus       163 -~---~~~~~~~~~~~~~~~----~v~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~--p~~  231 (441)
                       .   ...+-+.++.+++..    .+.| ..+|..++... +...+...+..     +...+.-||.|+||||-.  |+.
T Consensus        84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~-----~~~~~~ifd~VvVctGh~~~P~~  157 (448)
T KOG1399|consen   84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNG-----TQIEEEIFDAVVVCTGHYVEPRI  157 (448)
T ss_pred             ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCC-----cceeEEEeeEEEEcccCcCCCCC
Confidence             0   001111222233322    2333 33566676665 34444432211     012466799999999964  888


Q ss_pred             CCCCCc
Q 013561          232 FGIKGV  237 (441)
Q Consensus       232 ~~ipG~  237 (441)
                      |.+||.
T Consensus       158 P~~~g~  163 (448)
T KOG1399|consen  158 PQIPGP  163 (448)
T ss_pred             CcCCCC
Confidence            888883

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.72  E-value=1.4e-08  Score=93.40  Aligned_cols=115  Identities=18%  Similarity=0.154  Sum_probs=57.0

Q ss_pred             EEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccc-------h--hhh---hcCCCCccc----------------c
Q 013561          113 VVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPL-------L--AST---CVGTLEFRS----------------V  163 (441)
Q Consensus       113 vIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~l-------l--~~~---~~g~~~~~~----------------~  163 (441)
                      +||||||+||++|..|.+.|.+ |+|||+++.++-...       +  +..   ..+..+...                -
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            7999999999999999999999 999999876531100       0  000   000000000                0


Q ss_pred             ccchhhhhhhhcCCCCEEE-EEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC--CcCCCCCCC
Q 013561          164 AEPVSRIQTSLSSDPNSYF-YLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA--EPLTFGIKG  236 (441)
Q Consensus       164 ~~~~~~~~~~~~~~~~v~~-~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs--~p~~~~ipG  236 (441)
                      ...+.+..+.+.+..+..+ ...+|++++..++...+...+.         .++.+|+||+|||.  .|+.|.+||
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~---------~~~~a~~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG---------RTIRADRVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS----------EEEEEEEEE---SSCSB---S-TT
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec---------ceeeeeeEEEeeeccCCCCcccccc
Confidence            0001111111222223333 2457888887766566555321         37889999999995  789999999

...

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=1e-07  Score=99.71  Aligned_cols=159  Identities=21%  Similarity=0.349  Sum_probs=109.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il--~--------~-~~~~~~~~l~~~---l~-~~gI~i~~~~~v  244 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL--P--------T-EDAELSKEVARL---LK-KLGVRVVTGAKV  244 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC--C--------c-CCHHHHHHHHHH---HH-hcCCEEEeCcEE
Confidence            5799999999999999999999999999999988653  1        1 111222222222   33 346777655 68


Q ss_pred             EEEeC--CCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          188 IGIDT--DKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       188 ~~id~--~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .+++.  +++...+...+       +++.++++|.||+|+|.+|+...+. .+ ..                  .+    
T Consensus       245 ~~i~~~~~~~~~~~~~~~-------g~~~~i~~D~vi~a~G~~p~~~~l~-l~-~~------------------~~----  293 (472)
T PRK05976        245 LGLTLKKDGGVLIVAEHN-------GEEKTLEADKVLVSVGRRPNTEGIG-LE-NT------------------DI----  293 (472)
T ss_pred             EEEEEecCCCEEEEEEeC-------CceEEEEeCEEEEeeCCccCCCCCC-ch-hc------------------Cc----
Confidence            88864  33332222111       1224689999999999998764321 10 00                  00    


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                             +.             .. |.|.||+++|| +.|+|||+|||+      +   .+++++.|++||+.+|.||.
T Consensus       294 -------~~-------------~~-g~i~Vd~~l~t-s~~~IyAiGD~~------~---~~~~~~~A~~~g~~aa~~i~  341 (472)
T PRK05976        294 -------DV-------------EG-GFIQIDDFCQT-KERHIYAIGDVI------G---EPQLAHVAMAEGEMAAEHIA  341 (472)
T ss_pred             -------ee-------------cC-CEEEECCCccc-CCCCEEEeeecC------C---CcccHHHHHHHHHHHHHHHc
Confidence                   00             00 77999999999 899999999998      2   36789999999999999986

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.68  E-value=2.7e-06  Score=85.78  Aligned_cols=45  Identities=16%  Similarity=0.151  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          101 LEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       101 ~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +++.+....++++|||||+||++||..|+..|++|+|+|+++.++
T Consensus       116 le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         116 LEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             hhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            333344556899999999999999999999999999999999886

>PRK06370 mercuric reductase; Validated

Probab=98.66  E-value=1.5e-07  Score=98.11  Aligned_cols=161  Identities=22%  Similarity=0.317  Sum_probs=112.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|+++++.+++.  +        . ...++...+.+.   +. ..++.++.+ .+
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~GV~i~~~~~V  235 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL--P--------R-EDEDVAAAVREI---LE-REGIDVRLNAEC  235 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC--c--------c-cCHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence            5799999999999999999999999999999988654  1        1 111122222222   22 357777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+++.+.+.....      ++..++++|.||+|+|.+|+...+ +.+.                            
T Consensus       236 ~~i~~~~~~~~v~~~~~------~~~~~i~~D~Vi~A~G~~pn~~~l-~l~~----------------------------  280 (463)
T PRK06370        236 IRVERDGDGIAVGLDCN------GGAPEITGSHILVAVGRVPNTDDL-GLEA----------------------------  280 (463)
T ss_pred             EEEEEcCCEEEEEEEeC------CCceEEEeCEEEECcCCCcCCCCc-Cchh----------------------------
Confidence            88876554433322100      012478999999999999886432 1100                            


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |+|.||++||| +.|+|||+|||+.         .+.+++.|..||+++|+||.
T Consensus       281 --~g~~~~------------~~-G~i~vd~~l~t-~~~~IyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~  332 (463)
T PRK06370        281 --AGVETD------------AR-GYIKVDDQLRT-TNPGIYAAGDCNG---------RGAFTHTAYNDARIVAANLL  332 (463)
T ss_pred             --hCceEC------------CC-CcEeECcCCcC-CCCCEEEeeecCC---------CcccHHHHHHHHHHHHHHHh
Confidence              001111            11 78999999999 9999999999982         35789999999999999997

>PRK07846 mycothione reductase; Reviewed

Probab=98.66  E-value=1.6e-07  Score=97.63  Aligned_cols=101  Identities=18%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        ..+ .++...+.+.   + + .++.++. .++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll--~--------~~d-~~~~~~l~~l---~-~-~~v~i~~~~~v  229 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL--R--------HLD-DDISERFTEL---A-S-KRWDVRLGRNV  229 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--c--------ccC-HHHHHHHHHH---H-h-cCeEEEeCCEE
Confidence            5799999999999999999999999999999988654  1        111 1222222222   2 2 3466654 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .+++.+.+.+.+...+         ..++++|.|++|+|.+|+...+
T Consensus       230 ~~i~~~~~~v~v~~~~---------g~~i~~D~vl~a~G~~pn~~~l  267 (451)
T PRK07846        230 VGVSQDGSGVTLRLDD---------GSTVEADVLLVATGRVPNGDLL  267 (451)
T ss_pred             EEEEEcCCEEEEEECC---------CcEeecCEEEEEECCccCcccc
Confidence            8887665555444321         1378999999999999987643

>TIGR02053 MerA mercuric reductase

Probab=98.65  E-value=1.7e-07  Score=97.74  Aligned_cols=161  Identities=22%  Similarity=0.247  Sum_probs=113.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+|||+++.+++.  +        . .+.++...+.+.   +. ..++.++.+ ++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~-~d~~~~~~l~~~---l~-~~gV~i~~~~~V  230 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL--P--------R-EEPEISAAVEEA---LA-EEGIEVVTSAQV  230 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC--C--------c-cCHHHHHHHHHH---HH-HcCCEEEcCcEE
Confidence            4799999999999999999999999999999988654  1        1 111222223332   32 356777665 58


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ..++.+++.+.+.....      ++..++++|.||+|+|.+|+..++ +.+..                           
T Consensus       231 ~~i~~~~~~~~v~~~~~------~~~~~i~~D~ViiA~G~~p~~~~l-~l~~~---------------------------  276 (463)
T TIGR02053       231 KAVSVRGGGKIITVEKP------GGQGEVEADELLVATGRRPNTDGL-GLEKA---------------------------  276 (463)
T ss_pred             EEEEEcCCEEEEEEEeC------CCceEEEeCEEEEeECCCcCCCCC-Ccccc---------------------------
Confidence            88876544433332110      112478999999999999986533 22100                           


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                         ++++.            .. |+|.||++||| +.|+|||+|||+.         .+.++..|+.||+++|.||.
T Consensus       277 ---g~~~~------------~~-G~i~vd~~~~T-s~~~VyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~  327 (463)
T TIGR02053       277 ---GVKLD------------ER-GGILVDETLRT-SNPGIYAAGDVTG---------GLQLEYVAAKEGVVAAENAL  327 (463)
T ss_pred             ---CCEEC------------CC-CcEeECCCccC-CCCCEEEeeecCC---------CcccHhHHHHHHHHHHHHhc
Confidence               01111            11 78999999999 9999999999992         36789999999999999997

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.64  E-value=2.3e-07  Score=96.95  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=70.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||+||+.+++.  +        ..+ .+....+.+.   +. ..++.++.+ .+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il--~--------~~d-~~~~~~l~~~---l~-~~gV~i~~~~~V  238 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC--P--------GTD-TETAKTLQKA---LT-KQGMKFKLGSKV  238 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC--C--------CCC-HHHHHHHHHH---HH-hcCCEEEECcEE
Confidence            6799999999999999999999999999999988654  1        111 1122223322   33 346777655 78


Q ss_pred             EEEeCCCCEEEE--EecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYC--ETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~--~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.+.+.+  ....+      +++.++++|.|++|+|.+|+...
T Consensus       239 ~~i~~~~~~v~v~~~~~~~------g~~~~i~~D~vi~a~G~~pn~~~  280 (466)
T PRK06115        239 TGATAGADGVSLTLEPAAG------GAAETLQADYVLVAIGRRPYTQG  280 (466)
T ss_pred             EEEEEcCCeEEEEEEEcCC------CceeEEEeCEEEEccCCcccccc
Confidence            888765444433  22111      12247899999999999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.62  E-value=2.1e-07  Score=97.03  Aligned_cols=158  Identities=21%  Similarity=0.312  Sum_probs=112.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++. ..+
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~gI~v~~~~~v  239 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL--S--------FLD-DEISDALSYH---LR-DSGVTIRHNEEV  239 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC--C--------cCC-HHHHHHHHHH---HH-HcCCEEEECCEE
Confidence            6799999999999999999999999999999988654  1        111 1222223332   33 34677665 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ++++.+++.+.+...+ +        .++++|.|++|+|.+|+...+. .+.                            
T Consensus       240 ~~i~~~~~~~~v~~~~-g--------~~i~~D~vi~a~G~~p~~~~l~-l~~----------------------------  281 (461)
T PRK05249        240 EKVEGGDDGVIVHLKS-G--------KKIKADCLLYANGRTGNTDGLN-LEN----------------------------  281 (461)
T ss_pred             EEEEEeCCeEEEEECC-C--------CEEEeCEEEEeecCCccccCCC-chh----------------------------
Confidence            8887555555544311 1        3689999999999998865321 100                            


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |+|.||+++|| +.|+|||+|||+.         .|+++..|++||+.+|.||.
T Consensus       282 --~g~~~~------------~~-G~i~vd~~~~t-~~~~IyAiGD~~~---------~~~~~~~A~~~g~~aa~~i~  333 (461)
T PRK05249        282 --AGLEAD------------SR-GQLKVNENYQT-AVPHIYAVGDVIG---------FPSLASASMDQGRIAAQHAV  333 (461)
T ss_pred             --hCcEec------------CC-CcEeeCCCccc-CCCCEEEeeecCC---------CcccHhHHHHHHHHHHHHHc
Confidence              001111            11 78999999999 9999999999992         46789999999999999997

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.62  E-value=2e-07  Score=97.14  Aligned_cols=102  Identities=16%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.  +.        .+ .++...+.+.   +. ..+++++.+ .+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~~--------~~-~~~~~~~~~~---l~-~~gi~i~~~~~v  234 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--PG--------ED-AEVSKVVAKA---LK-KKGVKILTNTKV  234 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--CC--------CC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence            5799999999999999999999999999999988654  11        11 1122222222   33 346777665 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+++.+.+...+       +++.++++|.||+|+|..|+..
T Consensus       235 ~~i~~~~~~v~v~~~~-------g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       235 TAVEKNDDQVVYENKG-------GETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             EEEEEeCCEEEEEEeC-------CcEEEEEeCEEEEecCCcccCC
Confidence            8887766666654321       1123689999999999999876

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02697 lycopene epsilon cyclase

Probab=98.61  E-value=1.3e-06  Score=92.04  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+||||||||+++|..|++.|++|+|||+..
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~  141 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL  141 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence            5699999999999999999999999999999853

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.61  E-value=2.5e-07  Score=96.67  Aligned_cols=101  Identities=17%  Similarity=0.226  Sum_probs=70.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+||+|++.+++.-          . ...++...+.+.   +. ..++.++.+ .+
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~----------~-~d~~~~~~l~~~---L~-~~gV~i~~~~~v  241 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP----------G-EDADAAEVLEEV---FA-RRGMTVLKRSRA  241 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC----------C-CCHHHHHHHHHH---HH-HCCcEEEcCCEE
Confidence            56899999999999999999999999999999876541          1 111122223222   33 347777654 68


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.+.+.+...+ +        .++++|.|++|+|.+|+...
T Consensus       242 ~~v~~~~~~~~v~~~~-g--------~~l~~D~vl~a~G~~pn~~~  278 (466)
T PRK07845        242 ESVERTGDGVVVTLTD-G--------RTVEGSHALMAVGSVPNTAG  278 (466)
T ss_pred             EEEEEeCCEEEEEECC-C--------cEEEecEEEEeecCCcCCCC
Confidence            8886555555544321 1        37899999999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.60  E-value=2.9e-07  Score=95.40  Aligned_cols=157  Identities=20%  Similarity=0.310  Sum_probs=112.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|||+++.+.+.  +        . ...++...+.+.   +. ..++.++.+ .+
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~gV~v~~~~~v  222 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--P--------R-EDRDIADNIATI---LR-DQGVDIILNAHV  222 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--C--------C-cCHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence            5699999999999999999999999999999987554  1        1 111122222222   33 357777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+++.+.+....          .++++|.|++|+|.+|+...+...                      .       
T Consensus       223 ~~i~~~~~~v~v~~~~----------g~i~~D~vl~a~G~~pn~~~l~~~----------------------~-------  263 (441)
T PRK08010        223 ERISHHENQVQVHSEH----------AQLAVDALLIASGRQPATASLHPE----------------------N-------  263 (441)
T ss_pred             EEEEEcCCEEEEEEcC----------CeEEeCEEEEeecCCcCCCCcCch----------------------h-------
Confidence            8887665555554311          258899999999999986432110                      0       


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |+|.||+++|| ++|||||+|||+      +   .+++++.|..||+.+++||.
T Consensus       264 --~gl~~~------------~~-G~i~vd~~~~T-s~~~IyA~GD~~------~---~~~~~~~a~~~~~~~~~~~~  315 (441)
T PRK08010        264 --AGIAVN------------ER-GAIVVDKYLHT-TADNIWAMGDVT------G---GLQFTYISLDDYRIVRDELL  315 (441)
T ss_pred             --cCcEEC------------CC-CcEEECCCccc-CCCCEEEeeecC------C---CccchhHHHHHHHHHHHHHc
Confidence              011111            11 78999999999 999999999999      2   35799999999999999986

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=2e-07  Score=97.16  Aligned_cols=104  Identities=14%  Similarity=0.197  Sum_probs=72.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.  +.         ...++...+.+.   +. ..++.++.+ .+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~~---------~~~~~~~~l~~~---l~-~~gV~i~~~~~V  236 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL--PG---------EDKEISKLAERA---LK-KRGIKIKTGAKA  236 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC--Cc---------CCHHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence            5799999999999999999999999999999988654  11         111222223322   33 346777665 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+|+.+.+.+.+...++      +++.++++|.||+|+|.+|+...
T Consensus       237 ~~i~~~~~~v~v~~~~g------g~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        237 KKVEQTDDGVTVTLEDG------GKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             EEEEEeCCEEEEEEEeC------CeeEEEEeCEEEEeeCCccCCCC
Confidence            88887655555443211      12246899999999999998764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.57  E-value=3.6e-07  Score=94.91  Aligned_cols=158  Identities=18%  Similarity=0.224  Sum_probs=111.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+|+++++.+.+..          ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~----------~~d-~~~~~~l~~~---l~-~~gV~i~~~~~v  230 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR----------GFD-DDMRALLARN---ME-GRGIRIHPQTSL  230 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc----------ccC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            57999999999999999999999999999999876531          111 1222222222   33 346777655 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++...+.+.+...+         ..++++|.||+|+|..|+...+ +.+                             
T Consensus       231 ~~i~~~~~~~~v~~~~---------g~~i~~D~viva~G~~pn~~~l-~l~-----------------------------  271 (446)
T TIGR01424       231 TSITKTDDGLKVTLSH---------GEEIVADVVLFATGRSPNTKGL-GLE-----------------------------  271 (446)
T ss_pred             EEEEEcCCeEEEEEcC---------CcEeecCEEEEeeCCCcCCCcC-Ccc-----------------------------
Confidence            8887544444443311         1368999999999998876432 110                             


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                       ..++++..            + |+|.||+++|| ++|+|||+|||+      +   .++++..|++||+++|+||.
T Consensus       272 -~~g~~~~~------------~-G~i~vd~~~~T-s~~~IyA~GD~~------~---~~~l~~~A~~~g~~~a~~i~  324 (446)
T TIGR01424       272 -AAGVELND------------A-GAIAVDEYSRT-SIPSIYAVGDVT------D---RINLTPVAIMEATCFANTEF  324 (446)
T ss_pred             -ccCeEECC------------C-CcEEeCCCCcc-CCCCEEEeeccC------C---CccchhHHHHHHHHHHHHHh
Confidence             00112211            1 78999999999 999999999999      2   35799999999999999997

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=98.57  E-value=3.3e-07  Score=95.27  Aligned_cols=158  Identities=21%  Similarity=0.227  Sum_probs=111.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+||++++.+.+.  +        . ...++...+.+.   +. ..++.++.+ .+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---L~-~~GV~i~~~~~V  231 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL--R--------G-FDPDIRETLVEE---ME-KKGIRLHTNAVP  231 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc--c--------c-cCHHHHHHHHHH---HH-HCCcEEECCCEE
Confidence            5799999999999999999999999999999987543  1        0 111222222222   22 356777654 78


Q ss_pred             EEEeCCCCE-EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          188 IGIDTDKHE-VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       188 ~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      .+++.+++. +.+...+ +        .++++|.||+|+|.+|+...+.-.                      .      
T Consensus       232 ~~i~~~~~g~~~v~~~~-g--------~~i~~D~Vv~a~G~~p~~~~l~l~----------------------~------  274 (450)
T PRK06116        232 KAVEKNADGSLTLTLED-G--------ETLTVDCLIWAIGREPNTDGLGLE----------------------N------  274 (450)
T ss_pred             EEEEEcCCceEEEEEcC-C--------cEEEeCEEEEeeCCCcCCCCCCch----------------------h------
Confidence            888754332 4443321 1        368999999999999876532110                      0      


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                         .++++.            .. |+|.||+++|| ++|+|||+|||+      +   .++++..|++||+.+|+||.
T Consensus       275 ---~g~~~~------------~~-G~i~vd~~~~T-s~~~IyA~GD~~------~---~~~~~~~A~~~g~~aa~~i~  326 (450)
T PRK06116        275 ---AGVKLN------------EK-GYIIVDEYQNT-NVPGIYAVGDVT------G---RVELTPVAIAAGRRLSERLF  326 (450)
T ss_pred             ---cCceEC------------CC-CcEecCCCCCc-CCCCEEEEeecC------C---CcCcHHHHHHHHHHHHHHHh
Confidence               011111            11 78999999999 999999999998      2   35789999999999999997

>PLN02507 glutathione reductase

Probab=98.55  E-value=3.7e-07  Score=96.05  Aligned_cols=101  Identities=17%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|||+++.++..  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~GI~i~~~~~V  267 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL--R--------GFD-DEMRAVVARN---LE-GRGINLHPRTNL  267 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC--c--------ccC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence            5799999999999999999999999999999887543  0        111 1222223322   33 346777655 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.+.+.+...+         ..++++|.|++|+|.+|+...
T Consensus       268 ~~i~~~~~~~~v~~~~---------g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        268 TQLTKTEGGIKVITDH---------GEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             EEEEEeCCeEEEEECC---------CcEEEcCEEEEeecCCCCCCC
Confidence            8887554555544321         136899999999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.54  E-value=4e-07  Score=94.65  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il--~--------~-~d~~~~~~~~~~---l~-~~gI~i~~~~~v  230 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL--R--------S-FDSMISETITEE---YE-KEGINVHKLSKP  230 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC--c--------c-cCHHHHHHHHHH---HH-HcCCEEEcCCEE
Confidence            5799999999999999999999999999999988654  1        1 111222223322   32 346777654 67


Q ss_pred             EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.. .+.+...+       + +..+++|.|++|+|.+|+...
T Consensus       231 ~~i~~~~~~~~~v~~~~-------g-~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       231 VKVEKTVEGKLVIHFED-------G-KSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             EEEEEeCCceEEEEECC-------C-cEEEEcCEEEEeeCCCcCccc
Confidence            77765322 23332211       1 136899999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.52  E-value=1.7e-07  Score=73.29  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EEEE
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SCIG  189 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~  189 (441)
                      ||+|||||+.|+++|..|++.|.+||||++++.+.  +.         .+.++...+.+.   +. ..++.++.+ .+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~---------~~~~~~~~~~~~---l~-~~gV~v~~~~~v~~   65 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PG---------FDPDAAKILEEY---LR-KRGVEVHTNTKVKE   65 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TT---------SSHHHHHHHHHH---HH-HTTEEEEESEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hh---------cCHHHHHHHHHH---HH-HCCCEEEeCCEEEE
Confidence            69999999999999999999999999999999765  11         111222233333   33 347887765 6888


Q ss_pred             EeCCCCE
Q 013561          190 IDTDKHE  196 (441)
Q Consensus       190 id~~~~~  196 (441)
                      ++.+.+.
T Consensus        66 i~~~~~~   72 (80)
T PF00070_consen   66 IEKDGDG   72 (80)
T ss_dssp             EEEETTS
T ss_pred             EEEeCCE
Confidence            8776654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.51  E-value=6.2e-07  Score=93.99  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++|+|||||+.|+++|..++.   .|.+|||+++.+++.  +        . .+.++...+.+.   +. ..++.++.+
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--~--------~-~d~~~~~~l~~~---L~-~~GI~i~~~  251 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--R--------G-FDSTLRKELTKQ---LR-ANGINIMTN  251 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--c--------c-cCHHHHHHHHHH---HH-HcCCEEEcC
Confidence            5799999999999999976654   489999999988654  1        1 112233333333   33 346776654


Q ss_pred             -EEEEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          186 -SCIGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       186 -~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                       .+.+++.+.+ .+.+...+ +        .++++|.|++|+|.+|+...
T Consensus       252 ~~v~~i~~~~~~~~~v~~~~-g--------~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       252 ENPAKVTLNADGSKHVTFES-G--------KTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             CEEEEEEEcCCceEEEEEcC-C--------CEEEcCEEEEeeCCCcCccc
Confidence             6777865322 22222211 1        26899999999999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.48  E-value=1.1e-06  Score=91.93  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+||++++.. ..  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l--~--------~~~-~~~~~~l~~~---l~-~~GI~v~~~~~v  241 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL--S--------QED-PAVGEAIEAA---FR-REGIEVLKQTQA  241 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC--C--------CCC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence            5799999999999999999999999999998642 22  0        111 1222223332   33 357777765 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..++.+++.+.+....          .++++|.||+|+|..|+...
T Consensus       242 ~~i~~~~~~~~v~~~~----------~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        242 SEVDYNGREFILETNA----------GTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             EEEEEcCCEEEEEECC----------CEEEeCEEEEccCCCCCcCC
Confidence            8888766655554311          26899999999999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.45  E-value=2.4e-06  Score=82.12  Aligned_cols=37  Identities=8%  Similarity=0.024  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+||||||||+.||..|++.|++|+|+|+++.+.
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G   61 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG   61 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            3589999999999999999999999999999987653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.44  E-value=1e-06  Score=89.51  Aligned_cols=100  Identities=15%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      .++|+|||||+.|+++|..|.+.|.+|+++++.+++.-.         .. +......+.+.   +. ..++.++. ..+
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------~~-~~~~~~~l~~~---l~-~~gV~i~~~~~v  206 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------LM-PPEVSSRLQHR---LT-EMGVHLLLKSQL  206 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------hC-CHHHHHHHHHH---HH-hCCCEEEECCeE
Confidence            578999999999999999999999999999998865410         01 11122222222   32 34677765 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+.+.+...+         ..++++|.||+|+|..|+.
T Consensus       207 ~~i~~~~~~~~v~~~~---------g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        207 QGLEKTDSGIRATLDS---------GRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             EEEEccCCEEEEEEcC---------CcEEECCEEEECcCCCcch
Confidence            8888765554443321         1378999999999998865

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.44  E-value=8.5e-07  Score=90.66  Aligned_cols=100  Identities=11%  Similarity=0.047  Sum_probs=67.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+|||+++.+++.-          ..........+.+.   +. ..++.++.+ .+
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~---l~-~~GV~i~~~~~V  209 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG----------RNAPPPVQRYLLQR---HQ-QAGVRILLNNAI  209 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh----------hhcCHHHHHHHHHH---HH-HCCCEEEeCCee
Confidence            57899999999999999999999999999999886541          00111111112222   22 346777654 77


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      ++++. .+.+.+...+ +        .++++|.||+|+|.+|+..
T Consensus       210 ~~i~~-~~~~~v~l~~-g--------~~i~aD~Vv~a~G~~pn~~  244 (396)
T PRK09754        210 EHVVD-GEKVELTLQS-G--------ETLQADVVIYGIGISANDQ  244 (396)
T ss_pred             EEEEc-CCEEEEEECC-C--------CEEECCEEEECCCCChhhH
Confidence            88865 3333333211 1        3689999999999998753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.43  E-value=1.2e-06  Score=91.80  Aligned_cols=162  Identities=17%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||||+.|+++|..|++.|.+|||+++. .+.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--~--------~-~d~~~~~~l~~~---L~-~~gV~i~~~~~v  243 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--R--------G-FDQDCANKVGEH---ME-EHGVKFKRQFVP  243 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--c--------c-cCHHHHHHHHHH---HH-HcCCEEEeCceE
Confidence            568999999999999999999999999999873 222  1        1 111222223332   33 346777655 56


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ..++..++.+.+...+..      +..++++|.|++|+|..|+...+.-.                              
T Consensus       244 ~~v~~~~~~~~v~~~~~~------~~~~i~~D~vl~a~G~~pn~~~l~l~------------------------------  287 (484)
T TIGR01438       244 IKVEQIEAKVKVTFTDST------NGIEEEYDTVLLAIGRDACTRKLNLE------------------------------  287 (484)
T ss_pred             EEEEEcCCeEEEEEecCC------cceEEEeCEEEEEecCCcCCCcCCcc------------------------------
Confidence            666544444333221110      01368999999999999876532100                              


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                       ..++++.            ..-|+|.||+++|| +.|+|||+|||+.        ..+.+++.|++||+.+|+||.
T Consensus       288 -~~gv~~~------------~~~G~I~Vd~~~~T-s~p~IyA~GDv~~--------~~~~l~~~A~~~g~~aa~~i~  342 (484)
T TIGR01438       288 -NVGVKIN------------KKTGKIPADEEEQT-NVPYIYAVGDILE--------DKQELTPVAIQAGRLLAQRLF  342 (484)
T ss_pred             -cccceec------------CcCCeEecCCCccc-CCCCEEEEEEecC--------CCccchHHHHHHHHHHHHHHh
Confidence             0011111            00177999999999 9999999999993        135789999999999999997

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.43  E-value=6.8e-07  Score=92.61  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +. ..++.++. ..+
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~--------~-~d~~~~~~l~~~---l~-~~gI~i~~~~~v  212 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--K--------L-MDADMNQPILDE---LD-KREIPYRLNEEI  212 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--h--------h-cCHHHHHHHHHH---HH-hcCCEEEECCeE
Confidence            5799999999999999999999999999999988643  1        1 111222223332   33 34677765 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.  ..+.+.++           .++++|.|++|+|.+|+..
T Consensus       213 ~~i~~--~~v~~~~g-----------~~~~~D~vl~a~G~~pn~~  244 (438)
T PRK13512        213 DAING--NEVTFKSG-----------KVEHYDMIIEGVGTHPNSK  244 (438)
T ss_pred             EEEeC--CEEEECCC-----------CEEEeCEEEECcCCCcChH
Confidence            88863  34554431           2689999999999999865

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.42  E-value=1.2e-05  Score=77.04  Aligned_cols=37  Identities=8%  Similarity=0.065  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+||||||+|+.+|..|++.|++|+|+|+++.++
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G   57 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG   57 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4589999999999999999999999999999998653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.42  E-value=1.3e-06  Score=91.92  Aligned_cols=157  Identities=17%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++. ...  +        .. +.++...+.+.   +. ..++.++.+ .+
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--~--------~~-d~~~~~~l~~~---l~-~~GV~i~~~~~v  245 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL--R--------GF-DRQCSEKVVEY---MK-EQGTLFLEGVVP  245 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc--c--------cC-CHHHHHHHHHH---HH-HcCCEEEcCCeE
Confidence            568999999999999999999999999999864 221  1        11 11222223332   33 346777665 56


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ..++.....+.+...+ +        .++++|.|++|+|.+|+...++-..                             
T Consensus       246 ~~v~~~~~~~~v~~~~-g--------~~i~~D~vl~a~G~~pn~~~l~l~~-----------------------------  287 (499)
T PTZ00052        246 INIEKMDDKIKVLFSD-G--------TTELFDTVLYATGRKPDIKGLNLNA-----------------------------  287 (499)
T ss_pred             EEEEEcCCeEEEEECC-C--------CEEEcCEEEEeeCCCCCccccCchh-----------------------------
Confidence            6665443434333211 1        2679999999999999865332110                             


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |.+.+++. || +.|+|||+|||+.     +   .|.++..|++||+.+|+||.
T Consensus       288 --~g~~~~------------~~-G~ii~~~~-~T-s~p~IyAiGDv~~-----~---~~~l~~~A~~~g~~aa~ni~  339 (499)
T PTZ00052        288 --IGVHVN------------KS-NKIIAPND-CT-NIPNIFAVGDVVE-----G---RPELTPVAIKAGILLARRLF  339 (499)
T ss_pred             --cCcEEC------------CC-CCEeeCCC-cC-CCCCEEEEEEecC-----C---CcccHHHHHHHHHHHHHHHh
Confidence              001111            11 66666666 88 9999999999982     1   36789999999999999997

>PTZ00058 glutathione reductase; Provisional

Probab=98.42  E-value=1.1e-06  Score=93.45  Aligned_cols=102  Identities=12%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~--------~-~d~~i~~~l~~~---L~-~~GV~i~~~~~V  301 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--R--------K-FDETIINELEND---MK-KNNINIITHANV  301 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--c--------c-CCHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            5799999999999999999999999999999988654  1        1 112222223332   33 346776654 67


Q ss_pred             EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.. .+.+...+        +..++++|.|++|+|.+|+...
T Consensus       302 ~~I~~~~~~~v~v~~~~--------~~~~i~aD~VlvA~Gr~Pn~~~  340 (561)
T PTZ00058        302 EEIEKVKEKNLTIYLSD--------GRKYEHFDYVIYCVGRSPNTED  340 (561)
T ss_pred             EEEEecCCCcEEEEECC--------CCEEEECCEEEECcCCCCCccc
Confidence            77875432 33332211        1136899999999999998653

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.41  E-value=5e-07  Score=90.87  Aligned_cols=109  Identities=18%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEE-cCCCCcccccc------------hhhh--hcC----------C--------
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCI-SPRNHMVFTPL------------LAST--CVG----------T--------  157 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvi-e~~~~~~~~~l------------l~~~--~~g----------~--------  157 (441)
                      +|+|||||+||++||..+++.|++|.|+ ...+.+...++            ..++  ..|          .        
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            5999999999999999999999999999 33333322111            0000  000          0        


Q ss_pred             --CCccccccch-----hh-hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          158 --LEFRSVAEPV-----SR-IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       158 --~~~~~~~~~~-----~~-~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                        +..+.....+     .+ +.+.+...+++.+++++|++|..+++.|.--....+        ..+.+|.+|+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--------CEEecCEEEEeccc
Confidence              0000000001     11 112345568899999999999887777654332222        47899999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.41  E-value=1.2e-05  Score=85.16  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|||||+||+++|..+++.|.+|+|+|++.
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            69999999999999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.40  E-value=1.1e-06  Score=90.81  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.. +        ..+ ..+...+.+.   +. ..+++++. ..+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-~--------~~~-~~~~~~~~~~---l~-~~gV~v~~~~~v  202 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-K--------LFD-EEMNQIVEEE---LK-KHEINLRLNEEV  202 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-c--------ccC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence            57999999999999999999999999999999875521 1        011 1122222222   22 34677764 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+...+.+.++           .++++|.||+|+|.+|+..
T Consensus       203 ~~i~~~~~~v~~~~g-----------~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       203 DSIEGEERVKVFTSG-----------GVYQADMVILATGIKPNSE  236 (427)
T ss_pred             EEEecCCCEEEEcCC-----------CEEEeCEEEECCCccCCHH
Confidence            888876553233321           3789999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06847 hypothetical protein; Provisional

Probab=98.40  E-value=1.8e-06  Score=87.29  Aligned_cols=35  Identities=11%  Similarity=0.127  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            56899999999999999999999999999999864

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.40  E-value=8.4e-07  Score=86.08  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=32.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||++|+++|..|++.|.+|+|||+.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~   35 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP   35 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            6999999999999999999999999999998754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.40  E-value=1.2e-06  Score=91.18  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+++.  +        . .+.++...+.+.   +.+ . +.++. ..+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~--------~-~d~~~~~~~~~~---l~~-~-I~i~~~~~v  232 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--P--------L-EDPEVSKQAQKI---LSK-E-FKIKLGAKV  232 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--c--------c-hhHHHHHHHHHH---Hhh-c-cEEEcCCEE
Confidence            6799999999999999999999999999999988654  1        1 111122222222   333 3 66654 478


Q ss_pred             EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.+ .+.+...+       +++.++++|.|++|+|.+|+...
T Consensus       233 ~~i~~~~~~~v~~~~~~-------~~~~~i~~D~vi~a~G~~p~~~~  272 (460)
T PRK06292        233 TSVEKSGDEKVEELEKG-------GKTETIEADYVLVATGRRPNTDG  272 (460)
T ss_pred             EEEEEcCCceEEEEEcC-------CceEEEEeCEEEEccCCccCCCC
Confidence            88875543 44443211       12246899999999999998763

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.36  E-value=9.9e-06  Score=82.21  Aligned_cols=110  Identities=13%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             cEEEECCCHHHHHHHHhh--ccCCCeEEEEcCCCCccccc----c--------hhhhhcCCC--------Cccc--cccc
Q 013561          111 RVVVLGTGWGACRFLKGI--DTKIYDAVCISPRNHMVFTP----L--------LASTCVGTL--------EFRS--VAEP  166 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L--~~~g~~Vtvie~~~~~~~~~----l--------l~~~~~g~~--------~~~~--~~~~  166 (441)
                      +|+|||||+||+++|..|  ++.|.+|+|||+++...+..    +        +........        ....  ...+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            489999999999999999  78899999999876552110    0        001110000        0000  0000


Q ss_pred             ---hh--hh----hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          167 ---VS--RI----QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       167 ---~~--~~----~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                         ++  ++    .+... ..++.++.+.|.+|+.....+.+...++         .++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g---------~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADG---------RTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCC---------CEEEeeEEEECCCcccc
Confidence               10  11    11122 3567788889999998877444433211         37999999999995543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02661 Putative thiazole synthesis

Probab=98.35  E-value=2.9e-05  Score=77.20  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+.+|..|++. |++|+|||+....
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            45899999999999999999975 8999999998765

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.35  E-value=7.5e-07  Score=87.30  Aligned_cols=152  Identities=16%  Similarity=0.122  Sum_probs=87.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc----c------h-----hhhh-------cCCCCccccccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP----L------L-----ASTC-------VGTLEFRSVAEP  166 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~----l------l-----~~~~-------~g~~~~~~~~~~  166 (441)
                      ..+|+|||+||+|..||...++.|.+.++||++..++-+-    +      |     +...       .|.. -..+...
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~-vs~~~~d  117 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGID-VSSVSLD  117 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcc-ccceecC
Confidence            4689999999999999999999999999999987664221    1      1     1111       0110 0011112


Q ss_pred             hhhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCC
Q 013561          167 VSRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLT  231 (441)
Q Consensus       167 ~~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~  231 (441)
                      +..+              .+.+.+...+.++.+.-.-++++  +|.+...+       ++...+.+.++||||||. +.+
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~d-------g~~~ii~aKnIiiATGSeV~~~  188 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKID-------GEDQIIKAKNIIIATGSEVTPF  188 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccC-------CCceEEeeeeEEEEeCCccCCC
Confidence            2111              11233446777777766666654  45544422       344688999999999995 444


Q ss_pred             CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561          232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS  275 (441)
Q Consensus       232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a  275 (441)
                      |+|.=.++.+.   +...|..+.+- .+.+.+.+ +|..|+|+.
T Consensus       189 PGI~IDekkIV---SStgALsL~~v-Pk~~~viG-~G~IGLE~g  227 (506)
T KOG1335|consen  189 PGITIDEKKIV---SSTGALSLKEV-PKKLTVIG-AGYIGLEMG  227 (506)
T ss_pred             CCeEecCceEE---ecCCccchhhC-cceEEEEc-Cceeeeehh
Confidence            43221112222   22233333222 22344444 689999987

>PRK07236 hypothetical protein; Provisional

Probab=98.34  E-value=2e-06  Score=87.51  Aligned_cols=37  Identities=19%  Similarity=0.160  Sum_probs=34.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4567999999999999999999999999999999874

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.33  E-value=1.5e-05  Score=81.14  Aligned_cols=32  Identities=9%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence            799999999999999999988 99999998753

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.33  E-value=2.4e-06  Score=87.42  Aligned_cols=39  Identities=13%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT  147 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~  147 (441)
                      ..+|+|||+||||++||..|++.|++|.|+|+.+..++.
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k   41 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK   41 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence            568999999999999999999999999999998877654

>PRK13748 putative mercuric reductase; Provisional

Probab=98.33  E-value=2.2e-06  Score=91.61  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+ .. .         . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-~---------~-~d~~~~~~l~~~---l~-~~gI~i~~~~~v  333 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-F---------R-EDPAIGEAVTAA---FR-AEGIEVLEHTQA  333 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-c---------c-cCHHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence            5799999999999999999999999999999753 21 0         1 111222223332   32 346776644 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..++.++..+.+....          .++++|.|++|+|.+|+...
T Consensus       334 ~~i~~~~~~~~v~~~~----------~~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        334 SQVAHVDGEFVLTTGH----------GELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             EEEEecCCEEEEEecC----------CeEEeCEEEEccCCCcCCCC
Confidence            8887655555544321          26899999999999998753

>PRK14727 putative mercuric reductase; Provisional

Probab=98.32  E-value=2.4e-06  Score=89.57  Aligned_cols=156  Identities=16%  Similarity=0.200  Sum_probs=109.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+||++++.. ...          ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~----------~~d-~~~~~~l~~~---L~-~~GV~i~~~~~V  251 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLF----------RED-PLLGETLTAC---FE-KEGIEVLNNTQA  251 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCC----------cch-HHHHHHHHHH---HH-hCCCEEEcCcEE
Confidence            5799999999999999999999999999998743 220          111 1122222222   32 346777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ..++.+.+.+.+....          .++++|.||+|+|..|+...+.-..                             
T Consensus       252 ~~i~~~~~~~~v~~~~----------g~i~aD~VlvA~G~~pn~~~l~l~~-----------------------------  292 (479)
T PRK14727        252 SLVEHDDNGFVLTTGH----------GELRAEKLLISTGRHANTHDLNLEA-----------------------------  292 (479)
T ss_pred             EEEEEeCCEEEEEEcC----------CeEEeCEEEEccCCCCCccCCCchh-----------------------------
Confidence            7887655555554321          2688999999999999875321100                             


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |+|.||+++|| ++|+|||+|||+.         .|.+++.|+.||+.+|.||.
T Consensus       293 --~g~~~~------------~~-G~i~Vd~~~~T-s~~~IyA~GD~~~---------~~~~~~~A~~~G~~aa~~i~  344 (479)
T PRK14727        293 --VGVTTD------------TS-GAIVVNPAMET-SAPDIYAAGDCSD---------LPQFVYVAAAAGSRAGINMT  344 (479)
T ss_pred             --hCceec------------CC-CCEEECCCeec-CCCCEEEeeecCC---------cchhhhHHHHHHHHHHHHHc
Confidence              001111            11 78999999999 9999999999992         36789999999999999997

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.28  E-value=3.4e-06  Score=87.48  Aligned_cols=100  Identities=12%  Similarity=0.142  Sum_probs=67.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|+++++.+++.-.         ..+ .++...+.+.   +. ..+++++. ..+
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------~~~-~~~~~~l~~~---l~-~~gI~v~~~~~v  214 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD---------SFD-KEITDVMEEE---LR-ENGVELHLNEFV  214 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch---------hcC-HHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence            579999999999999999999999999999988754310         011 1122222222   22 34666654 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+.+...+...  +        .++++|.||+|+|..|+..
T Consensus       215 ~~i~~~~~~~~v~~~--~--------~~i~~d~vi~a~G~~p~~~  249 (444)
T PRK09564        215 KSLIGEDKVEGVVTD--K--------GEYEADVVIVATGVKPNTE  249 (444)
T ss_pred             EEEecCCcEEEEEeC--C--------CEEEcCEEEECcCCCcCHH
Confidence            888765443333221  1        2689999999999988754

>PLN02546 glutathione reductase

Probab=98.28  E-value=4.2e-06  Score=89.01  Aligned_cols=158  Identities=20%  Similarity=0.233  Sum_probs=108.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|+..|.+|+|+++.+.+.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il--~--------~~d-~~~~~~l~~~---L~-~~GV~i~~~~~v  316 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL--R--------GFD-EEVRDFVAEQ---MS-LRGIEFHTEESP  316 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc--c--------ccC-HHHHHHHHHH---HH-HCCcEEEeCCEE
Confidence            5799999999999999999999999999999887543  1        111 1122222222   33 357777654 67


Q ss_pred             EEEeCC-CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          188 IGIDTD-KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       188 ~~id~~-~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      .+++.. .+.+.+...+         .....+|.||+|+|.+|+...+. .+                     ..     
T Consensus       317 ~~i~~~~~g~v~v~~~~---------g~~~~~D~Viva~G~~Pnt~~L~-le---------------------~~-----  360 (558)
T PLN02546        317 QAIIKSADGSLSLKTNK---------GTVEGFSHVMFATGRKPNTKNLG-LE---------------------EV-----  360 (558)
T ss_pred             EEEEEcCCCEEEEEECC---------eEEEecCEEEEeeccccCCCcCC-hh---------------------hc-----
Confidence            777642 3334443311         12345899999999999764321 10                     00     


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                          ++++            +.. |+|.||+++|| ++|+|||+|||+.         .++++..|+.||+.+|+||.
T Consensus       361 ----gl~~------------d~~-G~I~VD~~l~T-s~p~IYAaGDv~~---------~~~l~~~A~~~g~~~a~~i~  411 (558)
T PLN02546        361 ----GVKM------------DKN-GAIEVDEYSRT-SVPSIWAVGDVTD---------RINLTPVALMEGGALAKTLF  411 (558)
T ss_pred             ----CCcC------------CCC-CcEeECCCcee-CCCCEEEeeccCC---------CcccHHHHHHHHHHHHHHHc
Confidence                0111            111 78999999999 9999999999992         35789999999999999997

>PRK10262 thioredoxin reductase; Provisional

Probab=98.26  E-value=8.3e-06  Score=80.85  Aligned_cols=161  Identities=19%  Similarity=0.184  Sum_probs=111.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.+.+||++++.+.+...             ....   +.+.+.+ +..++.++. ..+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~-------------~~~~---~~~~~~l-~~~gV~i~~~~~v  208 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILI---KRLMDKV-ENGNIILHTNRTL  208 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC-------------HHHH---HHHHhhc-cCCCeEEEeCCEE
Confidence            679999999999999999999999999999998753210             0011   1111112 345677765 478


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      ++++.+..   .+.+.+...+     ++..++++|.||+++|.+|+..-...                       .+...
T Consensus       209 ~~v~~~~~~~~~v~~~~~~~~-----~~~~~i~~D~vv~a~G~~p~~~l~~~-----------------------~l~~~  260 (321)
T PRK10262        209 EEVTGDQMGVTGVRLRDTQNS-----DNIESLDVAGLFVAIGHSPNTAIFEG-----------------------QLELE  260 (321)
T ss_pred             EEEEcCCccEEEEEEEEcCCC-----CeEEEEECCEEEEEeCCccChhHhhc-----------------------ccccc
Confidence            88876543   3445442111     12247899999999999987642210                       00000


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCC-----CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-----WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                                              . |+|.||+     ++|| ++|+|||+|||+..        ..+++..|+.+|..|
T Consensus       261 ------------------------~-g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~--------~~~~~~~A~~~g~~A  306 (321)
T PRK10262        261 ------------------------N-GYIKVQSGIHGNATQT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMA  306 (321)
T ss_pred             ------------------------C-CEEEECCCCccccccc-CCCCEEECeeccCC--------CcceEEEEehhHHHH
Confidence                                    0 6688886     6888 99999999999932        235667799999999


Q ss_pred             HHHHHHHhc
Q 013561          340 AELFNKKIG  348 (441)
Q Consensus       340 A~nI~~~l~  348 (441)
                      |..|.++|.
T Consensus       307 a~~~~~~l~  315 (321)
T PRK10262        307 ALDAERYLD  315 (321)
T ss_pred             HHHHHHHHH
Confidence            999999996

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.26  E-value=4.1e-06  Score=88.79  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||+||++||..+++.|.+|+|||++.
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            4689999999999999999999999999999983

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.26  E-value=5e-06  Score=84.54  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||+||+++|..|++.|++|+|+|+++..
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~   34 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI   34 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            4899999999999999999999999999998654

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.25  E-value=5.4e-06  Score=85.68  Aligned_cols=37  Identities=11%  Similarity=0.063  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+...
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g   41 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG   41 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            4689999999999999999999999999999987543

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.24  E-value=1e-05  Score=82.42  Aligned_cols=36  Identities=11%  Similarity=0.174  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            568999999999999999999999999999998754

>PRK10015 oxidoreductase; Provisional

Probab=98.24  E-value=6.3e-06  Score=85.16  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+||||||||++||..|++.|++|+|||+.+...
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            4689999999999999999999999999999987653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.22  E-value=7.3e-06  Score=83.25  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            458999999999999999999999999999998754

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.19  E-value=1.5e-05  Score=81.05  Aligned_cols=35  Identities=11%  Similarity=0.148  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            45899999999999999999999999999999864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.19  E-value=6.7e-06  Score=84.35  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            468999999999999999999999999999998653

>PRK05868 hypothetical protein; Validated

Probab=98.18  E-value=1.3e-05  Score=81.33  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            358999999999999999999999999999998654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.17  E-value=8.2e-06  Score=90.48  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||||+.|+++|..|++.|.+|+|+++.+++.-.         .++ ......+.+.   +. ..++.++.+ .+
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------~ld-~~~~~~l~~~---l~-~~GV~v~~~~~v  205 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------QLD-QTAGRLLQRE---LE-QKGLTFLLEKDT  205 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------hcC-HHHHHHHHHH---HH-HcCCEEEeCCce
Confidence            578999999999999999999999999999988754310         111 1112222222   22 346777665 57


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      +++..+.....+...+ +        .++++|.||+|+|.+|+..
T Consensus       206 ~~i~~~~~~~~v~~~d-G--------~~i~~D~Vi~a~G~~Pn~~  241 (785)
T TIGR02374       206 VEIVGATKADRIRFKD-G--------SSLEADLIVMAAGIRPNDE  241 (785)
T ss_pred             EEEEcCCceEEEEECC-C--------CEEEcCEEEECCCCCcCcH
Confidence            7776544332222211 1        3799999999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.14  E-value=1.3e-05  Score=84.74  Aligned_cols=158  Identities=19%  Similarity=0.159  Sum_probs=111.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|+..+.+|||+++.+.+..              .   ..+.+.   +.+..++.++.+ .+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~--------------~---~~l~~~---l~~~~gV~i~~~~~v  411 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--------------D---KVLQDK---LKSLPNVDILTSAQT  411 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh--------------h---HHHHHH---HhcCCCCEEEECCee
Confidence            67999999999999999999999999999998764420              0   011221   333346777665 67


Q ss_pred             EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .++..++..   +.+.+..+      +++..+++|.|++|+|..|+...+...                       +   
T Consensus       412 ~~i~~~~~~v~~v~~~~~~~------~~~~~i~~D~vi~a~G~~Pn~~~l~~~-----------------------~---  459 (515)
T TIGR03140       412 TEIVGDGDKVTGIRYQDRNS------GEEKQLDLDGVFVQIGLVPNTEWLKDA-----------------------V---  459 (515)
T ss_pred             EEEEcCCCEEEEEEEEECCC------CcEEEEEcCEEEEEeCCcCCchHHhhh-----------------------c---
Confidence            777655333   44444221      123478999999999999876422110                       0   


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                              +            ++.. |+|.||+++|| ++|+|||+|||+..+        .+++..|+.||..||.+|.
T Consensus       460 --------~------------~~~~-G~I~vd~~~~T-s~p~IyAaGDv~~~~--------~~~~~~A~~~G~~Aa~~i~  509 (515)
T TIGR03140       460 --------E------------LNRR-GEIVIDERGRT-SVPGIFAAGDVTTVP--------YKQIIIAMGEGAKAALSAF  509 (515)
T ss_pred             --------c------------cCCC-CeEEECCCCCC-CCCCEEEcccccCCc--------cceEEEEEccHHHHHHHHH
Confidence                    0            0111 78999999999 999999999999432        2467789999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      .+|.
T Consensus       510 ~~~~  513 (515)
T TIGR03140       510 DYLI  513 (515)
T ss_pred             HHHh
Confidence            8875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.14  E-value=7.4e-06  Score=77.17  Aligned_cols=33  Identities=6%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .|+|||+|++|++||..|+..|.+||||||..-
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence            699999999999999999999999999999753

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.13  E-value=8.1e-06  Score=90.82  Aligned_cols=101  Identities=13%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||||+.|+++|..|++.|.+|+|+++.+++.-.         .++ ......+.+.   +. ..++.++.+ .+
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------~ld-~~~~~~l~~~---L~-~~GV~v~~~~~v  210 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------QLD-QMGGEQLRRK---IE-SMGVRVHTSKNT  210 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------hcC-HHHHHHHHHH---HH-HCCCEEEcCCeE
Confidence            578999999999999999999999999999998754310         111 1122223333   32 346777655 67


Q ss_pred             EEEeCCC--CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDK--HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~--~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+|..+.  ....+...+         ..++++|.||+|+|.+|+..
T Consensus       211 ~~I~~~~~~~~~~v~~~d---------G~~i~~D~Vv~A~G~rPn~~  248 (847)
T PRK14989        211 LEIVQEGVEARKTMRFAD---------GSELEVDFIVFSTGIRPQDK  248 (847)
T ss_pred             EEEEecCCCceEEEEECC---------CCEEEcCEEEECCCcccCch
Confidence            7776432  222222211         13799999999999999763

>PRK09126 hypothetical protein; Provisional

Probab=98.13  E-value=1.5e-05  Score=81.11  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            56899999999999999999999999999999864

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.13  E-value=8.4e-06  Score=83.06  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +|+||||||||+++|..|++.|++|+|+|+.
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            6999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.12  E-value=1.8e-05  Score=80.59  Aligned_cols=37  Identities=11%  Similarity=0.138  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +...+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            3456899999999999999999999999999999763

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.12  E-value=3e-06  Score=64.06  Aligned_cols=32  Identities=9%  Similarity=0.164  Sum_probs=29.6

Q ss_pred             EECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          114 VLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       114 IIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      |||||++||++|..|++.|++|+|+|++++.+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999999775

...

>PRK09897 hypothetical protein; Provisional

Probab=98.11  E-value=1.7e-05  Score=83.77  Aligned_cols=37  Identities=5%  Similarity=0.050  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~  145 (441)
                      +++|+||||||+|+.+|..|.+.  ..+|+|||++..++
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            35899999999999999999764  35899999976553

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.11  E-value=8e-06  Score=83.07  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      .++++|||+|++|+++|..|++.|++||++|+.++.+-...+          ......+.+.   +. ..++.++. ..+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~---l~-~~gi~~~~~~~~  201 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAEL---LE-KYGVELLLGTKV  201 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHH---HH-HCCcEEEeCCce
Confidence            469999999999999999999999999999999977621100          1122223333   23 34577644 478


Q ss_pred             EEEeCCCCEEEEE--ecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCE--TVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~--~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+|+...+.....  ...        ....+++|.+++++|.+|+.
T Consensus       202 ~~i~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~g~~p~~  239 (415)
T COG0446         202 VGVEGKGNTLVVERVVGI--------DGEEIKADLVIIGPGERPNV  239 (415)
T ss_pred             EEEEcccCcceeeEEEEe--------CCcEEEeeEEEEeecccccH
Confidence            8898776543321  111        11478999999999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.08  E-value=3e-05  Score=75.43  Aligned_cols=157  Identities=25%  Similarity=0.188  Sum_probs=109.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.+.+|+++++.+.+..            .     ..+.+.   +.+..++.++. ..+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------~-----~~~~~~---l~~~~gv~~~~~~~v  200 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------E-----KILLDR---LRKNPNIEFLWNSTV  200 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------------C-----HHHHHH---HHhCCCeEEEeccEE
Confidence            57999999999999999999998999999998764320            0     111121   33333777764 478


Q ss_pred             EEEeCCCCE--EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          188 IGIDTDKHE--VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       188 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .+++.+.+.  +.+.+...      +++.++++|.+|+|+|.+|+..-+.                    ..   +.   
T Consensus       201 ~~i~~~~~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~~~~~~l~--------------------~~---~~---  248 (300)
T TIGR01292       201 KEIVGDNKVEGVKIKNTVT------GEEEELKVDGVFIAIGHEPNTELLK--------------------GL---LE---  248 (300)
T ss_pred             EEEEccCcEEEEEEEecCC------CceEEEEccEEEEeeCCCCChHHHH--------------------Hh---he---
Confidence            888765432  33333111      2235789999999999887642100                    00   00   


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                                          +++. |++.||+++|| ++|+|||+|||+..        .++++..|+.||+.||.+|.+
T Consensus       249 --------------------~~~~-g~i~v~~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       249 --------------------LDEG-GYIVTDEGMRT-SVPGVFAAGDVRDK--------GYRQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             --------------------ecCC-CcEEECCCCcc-CCCCEEEeecccCc--------chhhhhhhhhhHHHHHHHHHh
Confidence                                0111 78999999999 99999999999942        357899999999999999986


Q ss_pred             Hh
Q 013561          346 KI  347 (441)
Q Consensus       346 ~l  347 (441)
                      +|
T Consensus       299 ~~  300 (300)
T TIGR01292       299 YL  300 (300)
T ss_pred             hC
Confidence            54

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.08  E-value=1.6e-05  Score=80.89  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            589999999999999999999999999999875

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=4.7e-06  Score=80.84  Aligned_cols=131  Identities=17%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             cCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561           65 SSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus        65 ~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +++.+++. |   +|+-.|.-|++    +....+++.       |+|++|||+||+++++|--++..|.++.++=|.+.+
T Consensus       160 AtGg~p~~-P---nIpG~E~gidS----Dgff~Lee~-------Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv  224 (478)
T KOG0405|consen  160 ATGGRPII-P---NIPGAELGIDS----DGFFDLEEQ-------PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV  224 (478)
T ss_pred             EeCCccCC-C---CCCchhhcccc----ccccchhhc-------CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh
Confidence            45555532 2   35446666666    445666665       889999999999999999999999999999888765


Q ss_pred             ccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561          145 VFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI  223 (441)
Q Consensus       145 ~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl  223 (441)
                      +           +-.++.+...+.+.    .+..++++.. ..++.+....+...+.-...+        ....+|.|+.
T Consensus       225 L-----------R~FD~~i~~~v~~~----~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~--------~i~~vd~llw  281 (478)
T KOG0405|consen  225 L-----------RGFDEMISDLVTEH----LEGRGINVHKNSSVTKVIKTDDGLELVITSHG--------TIEDVDTLLW  281 (478)
T ss_pred             h-----------cchhHHHHHHHHHH----hhhcceeecccccceeeeecCCCceEEEEecc--------ccccccEEEE
Confidence            4           11112222222222    2234566543 345555433332111111000        1335999999


Q ss_pred             cCCCCcCCCC
Q 013561          224 AAGAEPLTFG  233 (441)
Q Consensus       224 AtGs~p~~~~  233 (441)
                      |+|+.|++.+
T Consensus       282 AiGR~Pntk~  291 (478)
T KOG0405|consen  282 AIGRKPNTKG  291 (478)
T ss_pred             EecCCCCccc
Confidence            9999998764

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.08  E-value=3.5e-05  Score=68.28  Aligned_cols=31  Identities=13%  Similarity=0.254  Sum_probs=26.9

Q ss_pred             EEECCCHHHHHHHHhhccC-----CCeEEEEcCCCC
Q 013561          113 VVLGTGWGACRFLKGIDTK-----IYDAVCISPRNH  143 (441)
Q Consensus       113 vIIGgG~aGl~aA~~L~~~-----g~~Vtvie~~~~  143 (441)
                      +|||+|++|++++.+|.+.     ..+|+|||+++.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            6999999999999999765     579999999654

>PRK06834 hypothetical protein; Provisional

Probab=98.07  E-value=2.1e-05  Score=82.70  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            46899999999999999999999999999999864

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.07  E-value=2e-05  Score=79.77  Aligned_cols=104  Identities=17%  Similarity=0.232  Sum_probs=71.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS-C  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-v  187 (441)
                      ..+|+++|+|+.|+++|..|...+++||+|++.+...     ++     +....+...+..+    .+.+++.|+.++ +
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~-----lf~~~i~~~~~~y----~e~kgVk~~~~t~~  278 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PR-----LFGPSIGQFYEDY----YENKGVKFYLGTVV  278 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hh-----hhhHHHHHHHHHH----HHhcCeEEEEecce
Confidence            5689999999999999999999999999999998543     11     1111222333333    345688887764 5


Q ss_pred             EEEeCCC-CEEE-EEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561          188 IGIDTDK-HEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK  235 (441)
Q Consensus       188 ~~id~~~-~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip  235 (441)
                      .+++... .+++ +...+         ..++++|.|++++|++|++....
T Consensus       279 s~l~~~~~Gev~~V~l~d---------g~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  279 SSLEGNSDGEVSEVKLKD---------GKTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             eecccCCCCcEEEEEecc---------CCEeccCeEEEeecccccccccc
Confidence            5565443 2332 22211         14899999999999999988655

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.06  E-value=2.3e-05  Score=83.05  Aligned_cols=158  Identities=19%  Similarity=0.173  Sum_probs=113.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|+..+.+|||+++.+.+.-            .     ..+.+.   +.+..++.++.+ .+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------~-----~~l~~~---l~~~~gI~i~~~~~v  410 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------D-----QVLQDK---LRSLPNVTIITNAQT  410 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------c-----HHHHHH---HhcCCCcEEEECcEE
Confidence            67999999999999999999999999999988774420            0     112221   333357777664 67


Q ss_pred             EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      +++..++..   +.+.+..+      +++.++++|.+++++|..|+...++..                           
T Consensus       411 ~~i~~~~g~v~~v~~~~~~~------g~~~~i~~D~v~~~~G~~p~~~~l~~~---------------------------  457 (517)
T PRK15317        411 TEVTGDGDKVTGLTYKDRTT------GEEHHLELEGVFVQIGLVPNTEWLKGT---------------------------  457 (517)
T ss_pred             EEEEcCCCcEEEEEEEECCC------CcEEEEEcCEEEEeECCccCchHHhhh---------------------------
Confidence            788765433   34443221      223478999999999999875422110                           


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                             +++            +.. |+|.||+++|| ++|+|||+|||+..        ..+.+..|+.+|..||.++.
T Consensus       458 -------v~~------------~~~-g~i~vd~~l~T-s~p~IyAaGDv~~~--------~~k~~~~A~~eG~~Aa~~~~  508 (517)
T PRK15317        458 -------VEL------------NRR-GEIIVDARGAT-SVPGVFAAGDCTTV--------PYKQIIIAMGEGAKAALSAF  508 (517)
T ss_pred             -------eee------------CCC-CcEEECcCCCC-CCCCEEECccccCC--------CCCEEEEhhhhHHHHHHHHH
Confidence                   011            011 78999999999 99999999999943        23678899999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      ++|.
T Consensus       509 ~~l~  512 (517)
T PRK15317        509 DYLI  512 (517)
T ss_pred             HHHh
Confidence            9986

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.05  E-value=3.7e-05  Score=78.79  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            568999999999999999999999999999986

>PRK06184 hypothetical protein; Provisional

Probab=98.04  E-value=1.6e-05  Score=83.92  Aligned_cols=36  Identities=11%  Similarity=0.082  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            458999999999999999999999999999998644

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.03  E-value=3.3e-05  Score=79.05  Aligned_cols=33  Identities=6%  Similarity=0.187  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            479999999999999999999999999999976

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.03  E-value=4e-05  Score=77.67  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~  144 (441)
                      +|+||||||+|+++|..|++.| ++|+|+|+.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            4899999999999999999999 999999998643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.02  E-value=2.9e-05  Score=79.53  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+||||||||+++|..|++.|++|+|+|+...
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            799999999999999999999999999999754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK06126 hypothetical protein; Provisional

Probab=98.02  E-value=3e-05  Score=82.65  Aligned_cols=35  Identities=11%  Similarity=0.236  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            46899999999999999999999999999999864

>PRK08244 hypothetical protein; Provisional

Probab=98.02  E-value=2.8e-05  Score=81.77  Aligned_cols=35  Identities=11%  Similarity=0.087  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            57999999999999999999999999999997643

>PRK06753 hypothetical protein; Provisional

Probab=98.01  E-value=1.8e-05  Score=79.92  Aligned_cols=34  Identities=9%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||++|+++|..|++.|++|+|+|+++.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            7999999999999999999999999999998753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.00  E-value=2.2e-05  Score=81.07  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=64.2

Q ss_pred             CcEEEECCCHHHHHHHHhhcc--------------CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT--------------KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLS  175 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~--------------~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~  175 (441)
                      ++|+|||||++|+++|..|+.              .+.+||||++.+.+.  +        ..+ ..+...+.+.   +.
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--~--------~~~-~~~~~~~~~~---L~  239 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--G--------SFD-QALRKYGQRR---LR  239 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--c--------cCC-HHHHHHHHHH---HH
Confidence            589999999999999998864              378999999987654  1        111 1122222222   33


Q ss_pred             CCCCEEEEE-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          176 SDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       176 ~~~~v~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                       ..+++++. ..+.+++.  +.+.++++           .++++|.+|+++|.+|+
T Consensus       240 -~~gV~v~~~~~v~~v~~--~~v~~~~g-----------~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        240 -RLGVDIRTKTAVKEVLD--KEVVLKDG-----------EVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             -HCCCEEEeCCeEEEEeC--CEEEECCC-----------CEEEccEEEEccCCCCc
Confidence             35788774 47888864  35655442           37899999999998876

>PRK07588 hypothetical protein; Provisional

Probab=98.00  E-value=3.3e-05  Score=78.72  Aligned_cols=34  Identities=12%  Similarity=0.116  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            7999999999999999999999999999998654

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.99  E-value=5.8e-05  Score=76.79  Aligned_cols=33  Identities=12%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC---CCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK---IYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~  141 (441)
                      ..+|+||||||+|+++|..|++.   |++|+|||+.
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            56899999999999999999998   9999999994

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.98  E-value=2.7e-05  Score=79.25  Aligned_cols=34  Identities=9%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            4689999999999999999999999999999975

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.95  E-value=7.8e-06  Score=85.52  Aligned_cols=40  Identities=20%  Similarity=0.446  Sum_probs=36.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+++++|+|||||.|||+||++|...|++|+|+|.+++++
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG   51 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence            3447799999999999999999999999999999998774

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.92  E-value=6.2e-05  Score=80.14  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ...+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~   45 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL   45 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3568999999999999999999999999999998643

>PLN02487 zeta-carotene desaturase

Probab=97.91  E-value=1.5e-05  Score=84.81  Aligned_cols=64  Identities=13%  Similarity=0.081  Sum_probs=47.5

Q ss_pred             cchhhhhcccccccccCCCCCCCC-CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561           81 NAERIVEESESEYQELSYPGLEAT-KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus        81 ~~e~~i~~~~~~~~~~~~~~~~~~-~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|++.|...+.. .++..+.++ +..++++|+|||+|++|+++|..|.+.|++|+|+|+.++.+
T Consensus        47 ~l~r~~~d~~~~~~-~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g  111 (569)
T PLN02487         47 SLDSNVSDMSVNAP-KGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG  111 (569)
T ss_pred             HHHHHhhhhhcccc-ccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence            58899999766532 233222222 22345699999999999999999999999999999987653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.91  E-value=4.1e-05  Score=78.00  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            458999999999999999999999999999998

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.90  E-value=8.9e-05  Score=79.10  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            568999999999999999999999999999998754

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.90  E-value=2.2e-05  Score=80.30  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||.+|+++|..|++.|++|+|||+++..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            7999999999999999999999999999987753

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK11445 putative oxidoreductase; Provisional

Probab=97.90  E-value=9.3e-05  Score=74.40  Aligned_cols=33  Identities=15%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+||||||||+++|..|++. ++|+|+|+.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            4799999999999999999999 99999999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.89  E-value=5.6e-05  Score=78.61  Aligned_cols=165  Identities=22%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .+++|+|||||+.|+.+|..|.+.|.+||++++.++...            ..  ....++.    + +..++.|+.. .
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~------------~~--~~~~~~~----l-~~~GV~~~~~~~  331 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM------------TA--RVEEIAH----A-EEEGVKFHFLCQ  331 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC------------CC--CHHHHHH----H-HhCCCEEEeccC
Confidence            368999999999999999999999999999998764210            00  0001111    1 2346666533 4


Q ss_pred             EEEEeCC-CCE---EEEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561          187 CIGIDTD-KHE---VYCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI  253 (441)
Q Consensus       187 v~~id~~-~~~---v~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~  253 (441)
                      ++++..+ ++.   +.+...     +.++.    ...+++.++++|.||+|+|..|+...+.+.                
T Consensus       332 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~----------------  395 (449)
T TIGR01316       332 PVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETT----------------  395 (449)
T ss_pred             cEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhcc----------------
Confidence            5555432 222   222210     00000    012334579999999999998865322111                


Q ss_pred             HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561          254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE  333 (441)
Q Consensus       254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~  333 (441)
                            .           +++            +.. |+|.||+++|| +.|+|||+|||+.         .+.++..|+
T Consensus       396 ------g-----------l~~------------~~~-G~i~vd~~~~T-s~~~VfA~GD~~~---------g~~~v~~Ai  435 (449)
T TIGR01316       396 ------R-----------LKT------------SER-GTIVVDEDQRT-SIPGVFAGGDIIL---------GAATVIRAM  435 (449)
T ss_pred             ------C-----------ccc------------CCC-CeEEeCCCCcc-CCCCEEEecCCCC---------CcHHHHHHH
Confidence                  0           011            111 78999999999 9999999999982         367999999


Q ss_pred             HHHHHHHHHHHHHh
Q 013561          334 RQGKYLAELFNKKI  347 (441)
Q Consensus       334 ~qg~~aA~nI~~~l  347 (441)
                      +||+.||.+|+++|
T Consensus       436 ~~G~~AA~~I~~~L  449 (449)
T TIGR01316       436 GQGKRAAKSINEYL  449 (449)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999999765

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.89  E-value=4.6e-05  Score=77.78  Aligned_cols=34  Identities=12%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~  143 (441)
                      .+|+||||||+|+++|..|++.|  ++|+|||+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            47999999999999999999985  99999999764

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.88  E-value=9.7e-06  Score=74.22  Aligned_cols=35  Identities=9%  Similarity=0.049  Sum_probs=33.6

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||+||+||+||++|++.|.+|+|||++.+++
T Consensus        32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G   66 (262)
T COG1635          32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG   66 (262)
T ss_pred             cEEEECcCcchHHHHHHHHhCCceEEEEEeecccC
Confidence            89999999999999999999999999999998775

>PLN02985 squalene monooxygenase

Probab=97.87  E-value=8e-05  Score=78.70  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ...+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            35689999999999999999999999999999974

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.85  E-value=0.00011  Score=75.56  Aligned_cols=183  Identities=14%  Similarity=0.098  Sum_probs=97.4

Q ss_pred             EEECCCHHHHHHH-Hhhc----cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EE
Q 013561          113 VVLGTGWGACRFL-KGID----TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-AS  186 (441)
Q Consensus       113 vIIGgG~aGl~aA-~~L~----~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~  186 (441)
                      +|++.|+.|++.+ ..++    +.|.+|++++..+...     +..        .+...+.+.   +.+ .++.++. .+
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppsl-----pG~--------rL~~aL~~~---l~~-~Gv~I~~g~~  281 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSV-----PGL--------RLQNALRRA---FER-LGGRIMPGDE  281 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCC-----chH--------HHHHHHHHH---HHh-CCCEEEeCCE
Confidence            7788999999988 5554    4799999998876433     111        122223332   333 3555544 48


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC---CCCCcccccccccC--HhHHHHH-HHHHHHh
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF---GIKGVKENAYFLRE--VNHAQEI-RKKLLLN  260 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~---~ipG~~~~~~~l~~--~~~a~~~-~~~i~~~  260 (441)
                      |.+++.++..+.......      +++..+.+|.+|+|+|+....-   ...++.|-++.+.-  ..+-... ...+   
T Consensus       282 V~~v~~~~~~V~~v~~~~------g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~---  352 (422)
T PRK05329        282 VLGAEFEGGRVTAVWTRN------HGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDF---  352 (422)
T ss_pred             EEEEEEeCCEEEEEEeeC------CceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhh---
Confidence            888876665554322111      1234689999999999853211   12233343433321  1111000 0000   


Q ss_pred             cccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCccc------CCCCCEEEecccccccccCCCCCCCchHHHHHH
Q 013561          261 LMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRA------PSVEDVFALGDCAGFLEQTGKPVLPALAQVAER  334 (441)
Q Consensus       261 ~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt------~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~  334 (441)
                      +  +. ...              ..     =.|.||+.||.      +.++|+||+|++..-+++--+   -.-.-+|+.
T Consensus       353 ~--~~-~p~--------------~~-----~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~  407 (422)
T PRK05329        353 F--AP-HPF--------------LQ-----FGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALA  407 (422)
T ss_pred             c--cC-Cch--------------hh-----cCceECCCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHH
Confidence            0  00 000              00     12445555443      168999999999854332100   011237888


Q ss_pred             HHHHHHHHHHHH
Q 013561          335 QGKYLAELFNKK  346 (441)
Q Consensus       335 qg~~aA~nI~~~  346 (441)
                      .|-.||++|.+.
T Consensus       408 ta~~a~~~~~~~  419 (422)
T PRK05329        408 TALHAAEQIAEE  419 (422)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>PRK07190 hypothetical protein; Provisional

Probab=97.83  E-value=8.9e-05  Score=77.90  Aligned_cols=36  Identities=14%  Similarity=-0.005  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+.+|..|++.|.+|+|||+.+..
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            358999999999999999999999999999998743

>PRK12831 putative oxidoreductase; Provisional

Probab=97.79  E-value=0.00016  Score=75.52  Aligned_cols=167  Identities=20%  Similarity=0.157  Sum_probs=107.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .+++|+|||||+.|+.+|..|.+.|.+||++++.+.....           ..   ...+...     ...++.++.. .
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~-----------a~---~~e~~~a-----~~eGV~i~~~~~  340 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP-----------AR---VEEVHHA-----KEEGVIFDLLTN  340 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC-----------CC---HHHHHHH-----HHcCCEEEeccc
Confidence            3789999999999999999999999999999886532100           00   0011111     1235555433 3


Q ss_pred             EEEEeCC-CCE---EEEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561          187 CIGIDTD-KHE---VYCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI  253 (441)
Q Consensus       187 v~~id~~-~~~---v~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~  253 (441)
                      ++.+..+ +..   +.+...     +.++.    ..++++.++++|.||+|+|..|+...+...                
T Consensus       341 ~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~----------------  404 (464)
T PRK12831        341 PVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTT----------------  404 (464)
T ss_pred             ceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhccc----------------
Confidence            4444322 122   222110     00010    012334579999999999998875321110                


Q ss_pred             HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561          254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA  332 (441)
Q Consensus       254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A  332 (441)
                                      .++++.            .. |.|.||++ +|| +.|+|||+|||+         ..+.+++.|
T Consensus       405 ----------------~gl~~~------------~~-G~i~vd~~~~~T-s~pgVfAaGD~~---------~g~~~v~~A  445 (464)
T PRK12831        405 ----------------KGLKIN------------KR-GCIVADEETGLT-SKEGVFAGGDAV---------TGAATVILA  445 (464)
T ss_pred             ----------------CCceEC------------CC-CcEEECCCCCcc-CCCCEEEeCCCC---------CCchHHHHH
Confidence                            001111            11 78999998 899 999999999998         236789999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 013561          333 ERQGKYLAELFNKKIG  348 (441)
Q Consensus       333 ~~qg~~aA~nI~~~l~  348 (441)
                      +.+|+.||.+|+++|.
T Consensus       446 i~~G~~AA~~I~~~L~  461 (464)
T PRK12831        446 MGAGKKAAKAIDEYLS  461 (464)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999985

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.78  E-value=9.2e-05  Score=74.64  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=60.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc----CC--CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT----KI--YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYF  182 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~----~g--~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~  182 (441)
                      .++|+|||+|++|+++|..|++    .|  .+|+|+ ..+.+..          ... ......+.+.   +. ..++++
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~----------~~~-~~~~~~~~~~---l~-~~gV~v  208 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLP----------GFP-AKVRRLVLRL---LA-RRGIEV  208 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccc----------cCC-HHHHHHHHHH---HH-HCCCEE
Confidence            5689999999999999988864    34  589999 3333220          011 1122222222   22 357777


Q ss_pred             EEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          183 YLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       183 ~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      +.+ .+..++.+  .+.+.++           .++++|.||+|+|.+|+.
T Consensus       209 ~~~~~v~~i~~~--~v~~~~g-----------~~i~~D~vi~a~G~~p~~  245 (364)
T TIGR03169       209 HEGAPVTRGPDG--ALILADG-----------RTLPADAILWATGARAPP  245 (364)
T ss_pred             EeCCeeEEEcCC--eEEeCCC-----------CEEecCEEEEccCCChhh
Confidence            765 67777543  5555432           378999999999998863

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK07208 hypothetical protein; Provisional

Probab=97.76  E-value=2.5e-05  Score=81.77  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=36.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +++++|+|||||++||++|..|.+.|++|+|+|++++++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            456789999999999999999999999999999999875

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.76  E-value=2e-05  Score=72.52  Aligned_cols=36  Identities=11%  Similarity=-0.007  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+|+|||+||+||+||++|++.|++|.|||++..++
T Consensus        18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G   53 (230)
T PF01946_consen   18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG   53 (230)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            489999999999999999999999999999987664

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.76  E-value=9.3e-05  Score=74.44  Aligned_cols=105  Identities=17%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .++|+|||+|+.|+++|..|.+.|.+ |+|+++.+...           ...   .......    +. ..++.++.+ .
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-----------~~~---~~~~~~~----l~-~~gi~i~~~~~  232 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-----------APA---GKYEIER----LI-ARGVEFLELVT  232 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-----------CCC---CHHHHHH----HH-HcCCEEeeccC
Confidence            57999999999999999999888886 99998765311           000   0111121    22 235666554 5


Q ss_pred             EEEEeCCCC--EEEEEecCC-----CC----CCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          187 CIGIDTDKH--EVYCETVNN-----GK----LSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       187 v~~id~~~~--~v~~~~~~~-----~~----~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      +++++.+++  .+.+.....     .+    ....+++.++++|.||+|+|.+|+..
T Consensus       233 v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  289 (352)
T PRK12770        233 PVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP  289 (352)
T ss_pred             ceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch
Confidence            666654433  222221100     00    00112345789999999999998653

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=2.3e-05  Score=80.50  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=34.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF  146 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~  146 (441)
                      +||+|+|||.|||+||.+|+..|++|||+|++++.+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            4899999999999999999999999999999998863

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.73  E-value=0.0002  Score=76.49  Aligned_cols=159  Identities=16%  Similarity=0.103  Sum_probs=107.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+.+..             ..    .+...   +....++.++.+ .+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~-------------~~----~~~~~---~~~~~gV~i~~~~~V  202 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC-------------AK----LIAEK---VKNHPKIEVKFNTEL  202 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc-------------CH----HHHHH---HHhCCCcEEEeCCEE
Confidence            68999999999999999999999999999998875320             00    01111   222346776644 68


Q ss_pred             EEEeCCCCE--EEEEecCCCCCCCCCCcce--eeCCE----EEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561          188 IGIDTDKHE--VYCETVNNGKLSHEPHQFK--VAYDK----LVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL  259 (441)
Q Consensus       188 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~--i~yD~----LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~  259 (441)
                      .+++.+...  +.+....+      +++.+  +++|.    |++|+|..|+..-...                       
T Consensus       203 ~~i~~~~~v~~v~~~~~~~------G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-----------------------  253 (555)
T TIGR03143       203 KEATGDDGLRYAKFVNNVT------GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-----------------------  253 (555)
T ss_pred             EEEEcCCcEEEEEEEECCC------CCEEEEeccccccceEEEEEeCCCCChhHHhh-----------------------
Confidence            888754432  22222111      11222  23666    9999999987641110                       


Q ss_pred             hcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          260 NLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                      .+           +            ++.+ |+|.||+++|| ++|+|||+|||+.        ..+..+..|++||+.|
T Consensus       254 ~l-----------~------------l~~~-G~I~vd~~~~T-s~p~IyAaGDv~~--------~~~~~v~~A~~~G~~A  300 (555)
T TIGR03143       254 VV-----------E------------LDKR-GYIPTNEDMET-NVPGVYAAGDLRP--------KELRQVVTAVADGAIA  300 (555)
T ss_pred             hc-----------c------------cCCC-CeEEeCCcccc-CCCCEEEceeccC--------CCcchheeHHhhHHHH
Confidence            00           0            1111 78999999999 9999999999972        1245677899999999


Q ss_pred             HHHHHHHhcc
Q 013561          340 AELFNKKIGE  349 (441)
Q Consensus       340 A~nI~~~l~~  349 (441)
                      |.||.++|..
T Consensus       301 a~~i~~~l~~  310 (555)
T TIGR03143       301 ATSAERYVKE  310 (555)
T ss_pred             HHHHHHHHHh
Confidence            9999999963

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.73  E-value=2.6e-05  Score=80.71  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~  145 (441)
                      ++|+|||||.+||+||..|++.|  ++|+|+|++++++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            47999999999999999999977  9999999999875

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.73  E-value=2.9e-05  Score=81.56  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|||||||+.||.+|..|++.|++|+|+|+++..+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            5799999999999999999999999999999988765

>TIGR00275 flavoprotein, HI0933 family

Probab=97.72  E-value=9.6e-05  Score=75.71  Aligned_cols=33  Identities=6%  Similarity=0.085  Sum_probs=30.4

Q ss_pred             EEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          113 VVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       113 vIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|||||++|+.||..+++.|++|+|+|+++..+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G   33 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG   33 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence            699999999999999999999999999987653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.71  E-value=3.1e-05  Score=76.88  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||++|+++|..|++.|++|+|||+++..
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            7999999999999999999999999999998765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.71  E-value=0.00017  Score=73.03  Aligned_cols=33  Identities=9%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      +|+|||||+||+++|..|++.  |++|+|+|+.+.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            489999999999999999976  999999999873

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.70  E-value=0.00027  Score=73.99  Aligned_cols=174  Identities=15%  Similarity=0.065  Sum_probs=106.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCcccccc--chhhhhhhhcCCCCEEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAE--PVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~v~~~~  184 (441)
                      .+++|+|||||+.|+.+|..+.+.|. +||+++..+......      ...........  .+..    + +..++.++.
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~-~~~GV~i~~  348 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------NKNNPWPYWPMKLEVSN----A-HEEGVEREF  348 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------ccccCCcccchHHHHHH----H-HHcCCeEEe
Confidence            36899999999999999998888775 799887655322100      00000000000  1111    1 224666655


Q ss_pred             E-EEEEEeCCCCEEE---EEecC--CC-CCCCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHHHHHHH
Q 013561          185 A-SCIGIDTDKHEVY---CETVN--NG-KLSHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQEIRKK  256 (441)
Q Consensus       185 ~-~v~~id~~~~~v~---~~~~~--~~-~~~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~~~~~~  256 (441)
                      . .+++|..++..+.   +....  ++ .....+++.++++|.||+|+|..|+...+ ...                   
T Consensus       349 ~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~-------------------  409 (471)
T PRK12810        349 NVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQF-------------------  409 (471)
T ss_pred             ccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcccc-------------------
Confidence            4 5666654333332   21110  00 00112344679999999999988864321 110                   


Q ss_pred             HHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeC-CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHH
Q 013561          257 LLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVD-EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQ  335 (441)
Q Consensus       257 i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd-~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~q  335 (441)
                         .           +++            +.. |.|.|| +++|| +.|+|||+|||+.         .+.++..|+.|
T Consensus       410 ---g-----------l~~------------~~~-g~i~vd~~~~~T-s~~gVfa~GD~~~---------g~~~~~~Av~~  452 (471)
T PRK12810        410 ---G-----------VEL------------DER-GRVAAPDNAYQT-SNPKVFAAGDMRR---------GQSLVVWAIAE  452 (471)
T ss_pred             ---C-----------ccc------------CCC-CCEEeCCCcccC-CCCCEEEccccCC---------CchhHHHHHHH
Confidence               0           000            111 779998 79999 9999999999992         34689999999


Q ss_pred             HHHHHHHHHHHhc
Q 013561          336 GKYLAELFNKKIG  348 (441)
Q Consensus       336 g~~aA~nI~~~l~  348 (441)
                      |+.||.+|.++|.
T Consensus       453 G~~AA~~i~~~L~  465 (471)
T PRK12810        453 GRQAARAIDAYLM  465 (471)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999996

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.69  E-value=0.0017  Score=65.68  Aligned_cols=46  Identities=35%  Similarity=0.390  Sum_probs=38.8

Q ss_pred             ceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561          292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       292 ~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      +|.||+.+.| +.+++|++||++-         +..-.+.|...|-.+|+.|....
T Consensus       438 ri~~d~~~~t-~i~gLy~aGdGAG---------~argI~~Aaa~Gi~~A~~i~~k~  483 (486)
T COG2509         438 RIKVDEDLST-SIKGLYPAGDGAG---------LARGIVSAAADGIKAAEGIARKY  483 (486)
T ss_pred             eEeeccccee-eecceEEcccccc---------ccchhHHHhhhhHHHHHHHHHHh
Confidence            6889999888 9999999999993         34457778899999999998654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.68  E-value=5.4e-05  Score=76.68  Aligned_cols=97  Identities=13%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-------------CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-------------IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLS  175 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-------------g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~  175 (441)
                      ..+|+|+|||+.|+++|-+|+..             ..+|+|||+.++++  |.+         ++.......+.   + 
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--p~~---------~~~l~~~a~~~---L-  219 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--PMF---------PPKLSKYAERA---L-  219 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--cCC---------CHHHHHHHHHH---H-
Confidence            34799999999999999887531             24999999999776  322         12222223333   2 


Q ss_pred             CCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          176 SDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       176 ~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      ++.+|++..+ .|++++.  +.|+++++.          .++++|.+|-|+|.+++..
T Consensus       220 ~~~GV~v~l~~~Vt~v~~--~~v~~~~g~----------~~I~~~tvvWaaGv~a~~~  265 (405)
T COG1252         220 EKLGVEVLLGTPVTEVTP--DGVTLKDGE----------EEIPADTVVWAAGVRASPL  265 (405)
T ss_pred             HHCCCEEEcCCceEEECC--CcEEEccCC----------eeEecCEEEEcCCCcCChh
Confidence            3357777665 7888875  456665531          1599999999999886543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.68  E-value=0.00014  Score=75.78  Aligned_cols=167  Identities=20%  Similarity=0.127  Sum_probs=109.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|+|||||+.|+.+|..|.+.|. +||++++.+.....          ....    .+..    +. ..++.++.+ 
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~----------~~~~----~~~~----~~-~~GV~i~~~~  332 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMP----------ASEE----EVEH----AK-EEGVEFEWLA  332 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC----------CCHH----HHHH----HH-HCCCEEEecC
Confidence            36799999999999999999999988 89999987532210          0000    1111    22 346776654 


Q ss_pred             EEEEEeCCCCE---EEEEecC-----CCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHH
Q 013561          186 SCIGIDTDKHE---VYCETVN-----NGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIR  254 (441)
Q Consensus       186 ~v~~id~~~~~---v~~~~~~-----~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~  254 (441)
                      .+..+..+++.   +.+....     ..+.   ..++++.++++|.||+|+|..|+..-+...                 
T Consensus       333 ~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~-----------------  395 (457)
T PRK11749        333 APVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTT-----------------  395 (457)
T ss_pred             CcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccc-----------------
Confidence            56666544422   4443210     0000   011234579999999999998874211100                 


Q ss_pred             HHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561          255 KKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE  333 (441)
Q Consensus       255 ~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~  333 (441)
                                     .+++            ++.. |+|.||+ +++| +.|+|||+|||+.         .++++..|+
T Consensus       396 ---------------~gl~------------~~~~-g~i~vd~~~~~T-s~~~VfA~GD~~~---------~~~~~~~A~  437 (457)
T PRK11749        396 ---------------PGLE------------LNRW-GTIIADDETGRT-SLPGVFAGGDIVT---------GAATVVWAV  437 (457)
T ss_pred             ---------------cCcc------------CCCC-CCEEeCCCCCcc-CCCCEEEeCCcCC---------CchHHHHHH
Confidence                           0001            0111 7899998 7888 9999999999991         357899999


Q ss_pred             HHHHHHHHHHHHHhc
Q 013561          334 RQGKYLAELFNKKIG  348 (441)
Q Consensus       334 ~qg~~aA~nI~~~l~  348 (441)
                      .||+.+|.+|.++|.
T Consensus       438 ~~G~~aA~~I~~~l~  452 (457)
T PRK11749        438 GDGKDAAEAIHEYLE  452 (457)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999996

>PLN02268 probable polyamine oxidase

Probab=97.62  E-value=5.3e-05  Score=78.33  Aligned_cols=36  Identities=17%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ++|+|||||.+||+||+.|.+.|++|+|+|++++++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            379999999999999999999999999999999876

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.61  E-value=5.7e-05  Score=77.28  Aligned_cols=36  Identities=8%  Similarity=0.168  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            468999999999999999999999999999998753

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.61  E-value=6.7e-05  Score=78.01  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+||||||||+++|..|++.|++|+|+|+..
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5699999999999999999999999999999975

>PRK07045 putative monooxygenase; Reviewed

Probab=97.60  E-value=5.8e-05  Score=76.79  Aligned_cols=36  Identities=8%  Similarity=0.122  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            458999999999999999999999999999998754

>PRK07233 hypothetical protein; Provisional

Probab=97.58  E-value=5.9e-05  Score=77.57  Aligned_cols=35  Identities=6%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ||+|||||.+||+||..|++.|++|+|+|++++++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            69999999999999999999999999999999775

>PRK08013 oxidoreductase; Provisional

Probab=97.57  E-value=7.2e-05  Score=76.53  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            46899999999999999999999999999999864

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.54  E-value=7.7e-05  Score=76.11  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            45899999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.52  E-value=0.00049  Score=76.28  Aligned_cols=167  Identities=19%  Similarity=0.183  Sum_probs=107.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|||||||+.|+.+|..+.+.|.+ ||++++++......          ..    ..+...     +..++.++.. 
T Consensus       569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----------~~----~e~~~~-----~~~GV~i~~~~  629 (752)
T PRK12778        569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA----------RL----EEVKHA-----KEEGIEFLTLH  629 (752)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----------CH----HHHHHH-----HHcCCEEEecC
Confidence            368999999999999999999999987 99999876421100          00    001111     1235555433 


Q ss_pred             EEEEEeCC-CCE---EEEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHH
Q 013561          186 SCIGIDTD-KHE---VYCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQE  252 (441)
Q Consensus       186 ~v~~id~~-~~~---v~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~  252 (441)
                      .++++..+ +..   +.+...     +.++.    ..++++.++++|.||+|+|..|+.......               
T Consensus       630 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~---------------  694 (752)
T PRK12778        630 NPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI---------------  694 (752)
T ss_pred             cceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc---------------
Confidence            34444322 222   222110     00110    112344579999999999998875321110               


Q ss_pred             HHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561          253 IRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA  332 (441)
Q Consensus       253 ~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A  332 (441)
                                       .++++.            .. |+|.||++++| +.|+|||+|||+.         .+.+++.|
T Consensus       695 -----------------~gl~~~------------~~-G~i~vd~~~~T-s~~gVfA~GD~~~---------g~~~vv~A  734 (752)
T PRK12778        695 -----------------PGLELN------------RK-GTIVVDEEMQS-SIPGIYAGGDIVR---------GGATVILA  734 (752)
T ss_pred             -----------------cCceEC------------CC-CCEEeCCCCCC-CCCCEEEeCCccC---------CcHHHHHH
Confidence                             001111            11 78999999999 9999999999992         36789999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 013561          333 ERQGKYLAELFNKKIG  348 (441)
Q Consensus       333 ~~qg~~aA~nI~~~l~  348 (441)
                      +.||+.||.+|.++|.
T Consensus       735 v~~G~~AA~~I~~~L~  750 (752)
T PRK12778        735 MGDGKRAAAAIDEYLS  750 (752)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999985

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.52  E-value=4.9e-05  Score=75.90  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc--------------CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT--------------KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSL  174 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~--------------~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~  174 (441)
                      .-++|||||||.|+++|.+|+.              ...+||++|..++++  +++        +.     .+.+..+.+
T Consensus       218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--~mF--------dk-----rl~~yae~~  282 (491)
T KOG2495|consen  218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--NMF--------DK-----RLVEYAENQ  282 (491)
T ss_pred             eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--HHH--------HH-----HHHHHHHHH
Confidence            3478999999999999988852              457999999999765  221        11     122222112


Q ss_pred             cCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          175 SSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       175 ~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      ..+.++.+..+ .|..++  .+.++++..+       |+..+++|--||-|||..|+.
T Consensus       283 f~~~~I~~~~~t~Vk~V~--~~~I~~~~~~-------g~~~~iPYG~lVWatG~~~rp  331 (491)
T KOG2495|consen  283 FVRDGIDLDTGTMVKKVT--EKTIHAKTKD-------GEIEEIPYGLLVWATGNGPRP  331 (491)
T ss_pred             hhhccceeecccEEEeec--CcEEEEEcCC-------CceeeecceEEEecCCCCCch
Confidence            23456777666 566554  4566666542       334689999999999987653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.52  E-value=8.9e-05  Score=75.59  Aligned_cols=36  Identities=14%  Similarity=0.042  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            468999999999999999999999999999976533

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.52  E-value=8.5e-05  Score=77.34  Aligned_cols=37  Identities=14%  Similarity=0.195  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC----CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK----IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~----g~~Vtvie~~~~~~  145 (441)
                      +++|+|||||++||++|..|.+.    |++|+|+|++++++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            46899999999999999999998    99999999999875

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.49  E-value=0.00066  Score=73.94  Aligned_cols=166  Identities=19%  Similarity=0.144  Sum_probs=106.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|+|||||+.|+.+|..+.+.|. +|||+.+.+.... +         ...    ..+...   +  ..++.++.. 
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~m-p---------a~~----~ei~~a---~--~eGV~i~~~~  382 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEM-P---------ANR----AEIEEA---L--AEGVSLRELA  382 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccC-C---------CCH----HHHHHH---H--HcCCcEEecc
Confidence            37899999999999999999998886 6999988763210 0         000    112221   1  235555543 


Q ss_pred             EEEEEeCCCCEEEE-----EecC--CCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHH
Q 013561          186 SCIGIDTDKHEVYC-----ETVN--NGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIR  254 (441)
Q Consensus       186 ~v~~id~~~~~v~~-----~~~~--~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~  254 (441)
                      .+.+|..+++.+.+     ..+.  ..+.    ..++++..+++|.||+|+|..|+...+...                 
T Consensus       383 ~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~-----------------  445 (652)
T PRK12814        383 APVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAA-----------------  445 (652)
T ss_pred             CcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccccc-----------------
Confidence            34555433333222     1110  0000    112344579999999999988765321110                 


Q ss_pred             HHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561          255 KKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE  333 (441)
Q Consensus       255 ~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~  333 (441)
                                      ++++            +.. |+|.||+ +++| +.|+|||+|||+.         .|.++..|+
T Consensus       446 ----------------gl~~------------~~~-G~I~vd~~~~~T-s~pgVfA~GDv~~---------g~~~v~~Ai  486 (652)
T PRK12814        446 ----------------GIGT------------SRN-GTVKVDPETLQT-SVAGVFAGGDCVT---------GADIAINAV  486 (652)
T ss_pred             ----------------Cccc------------cCC-CcEeeCCCCCcC-CCCCEEEcCCcCC---------CchHHHHHH
Confidence                            0011            011 7899997 5788 9999999999982         367899999


Q ss_pred             HHHHHHHHHHHHHhc
Q 013561          334 RQGKYLAELFNKKIG  348 (441)
Q Consensus       334 ~qg~~aA~nI~~~l~  348 (441)
                      +||+.||.+|.++|.
T Consensus       487 ~~G~~AA~~I~~~L~  501 (652)
T PRK12814        487 EQGKRAAHAIDLFLN  501 (652)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999996

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.48  E-value=0.00011  Score=74.30  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            489999999999999999999999999999974

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.46  E-value=0.00011  Score=76.78  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC------CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK------IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~------g~~Vtvie~~~~~~  145 (441)
                      +++|+|||||.+||+||..|.+.      |++|+|+|++++++
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            35799999999999999999875      47999999999875

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.44  E-value=0.00012  Score=74.70  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            45899999999999999999999999999999874

>PLN02529 lysine-specific histone demethylase 1

Probab=97.44  E-value=0.00015  Score=79.22  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ...++|+|||||++||+||..|++.|++|+|+|++++
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            3467999999999999999999999999999999875

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.43  E-value=0.00012  Score=76.89  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=33.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ++|+|||||++||+||..|++.|++|+|+|+++..+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            479999999999999999999999999999998764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06185 hypothetical protein; Provisional

Probab=97.42  E-value=0.00015  Score=74.23  Aligned_cols=35  Identities=9%  Similarity=0.056  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            56899999999999999999999999999999753

>PLN02576 protoporphyrinogen oxidase

Probab=97.42  E-value=0.00014  Score=76.51  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||++|..|.+. |++|+|+|++++++
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            45899999999999999999999 99999999999875

>PRK07538 hypothetical protein; Provisional

Probab=97.41  E-value=0.00014  Score=74.76  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            7999999999999999999999999999998743

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00017  Score=70.01  Aligned_cols=132  Identities=18%  Similarity=0.098  Sum_probs=78.5

Q ss_pred             cCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561           65 SSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus        65 ~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +++-+|.. +  -+-+..|.-|++    +...+++..       +-|-+|||+||.+|+||-.|+..|++|||.=|+--+
T Consensus       168 atG~RPrY-p--~IpG~~Ey~ITS----DDlFsl~~~-------PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L  233 (503)
T KOG4716|consen  168 ATGLRPRY-P--DIPGAKEYGITS----DDLFSLPYE-------PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL  233 (503)
T ss_pred             EecCCCCC-C--CCCCceeeeecc----cccccccCC-------CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec
Confidence            45555532 1  123445555666    444555554       568899999999999999999999999999765311


Q ss_pred             ccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE----EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCE
Q 013561          145 VFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA----SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDK  220 (441)
Q Consensus       145 ~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~  220 (441)
                                .|.  +.++...+...    ++..++.|+..    .|..++.  +.+.+......    .+++.+-.||.
T Consensus       234 ----------rGF--Dqdmae~v~~~----m~~~Gikf~~~~vp~~Veq~~~--g~l~v~~k~t~----t~~~~~~~ydT  291 (503)
T KOG4716|consen  234 ----------RGF--DQDMAELVAEH----MEERGIKFLRKTVPERVEQIDD--GKLRVFYKNTN----TGEEGEEEYDT  291 (503)
T ss_pred             ----------ccc--cHHHHHHHHHH----HHHhCCceeecccceeeeeccC--CcEEEEeeccc----ccccccchhhh
Confidence                      121  22333333333    33457777655    3444443  33333322111    12334567999


Q ss_pred             EEEcCCCCcCCC
Q 013561          221 LVIAAGAEPLTF  232 (441)
Q Consensus       221 LvlAtGs~p~~~  232 (441)
                      |+.|.|+.+.+.
T Consensus       292 Vl~AiGR~~~~~  303 (503)
T KOG4716|consen  292 VLWAIGRKALTD  303 (503)
T ss_pred             hhhhhccccchh
Confidence            999999987543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.00016  Score=74.52  Aligned_cols=34  Identities=12%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||.||++||...++.|.++.++.-+.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            4689999999999999999999999999987653

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.38  E-value=0.00015  Score=75.43  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=33.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ||+|||||++||++|..|.+.|++|+|+|++++++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G   35 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG   35 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            59999999999999999999999999999998765

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.37  E-value=0.00016  Score=74.04  Aligned_cols=34  Identities=12%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++|+|||||.+|+++|.+|++.|++|+|+|+++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999864

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.37  E-value=0.00023  Score=75.09  Aligned_cols=41  Identities=5%  Similarity=-0.021  Sum_probs=34.9

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccC----CCeEEEEcCCCCcc
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTK----IYDAVCISPRNHMV  145 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~----g~~Vtvie~~~~~~  145 (441)
                      ...++++|+|||||.|||++|..|.+.    |++|+|+|+.+..+
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G   62 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG   62 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence            344467999999999999999999884    68999999988653

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.37  E-value=0.00014  Score=76.78  Aligned_cols=34  Identities=18%  Similarity=0.311  Sum_probs=32.4

Q ss_pred             EEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      |||||||.+||+||..|++.|++|+|+|++++++
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            6999999999999999999999999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.36  E-value=0.00018  Score=72.92  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      .+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            47999999999999999999999999999986

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.36  E-value=0.00017  Score=70.40  Aligned_cols=36  Identities=11%  Similarity=0.216  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +.||+|||+|.+||+||..|++. ++|||||.+++.+
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlG   43 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLG   43 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEecccccc
Confidence            66999999999999999999987 8999999999876

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.35  E-value=0.00016  Score=74.27  Aligned_cols=36  Identities=6%  Similarity=0.130  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~  145 (441)
                      ++|+|||||.+||++|.+|++.+  ++|||+|++++.+
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G   38 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence            47999999999999999999998  9999999998876

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.0014  Score=64.51  Aligned_cols=97  Identities=22%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||||..++..|..|.+.+.+||++-+++.+.-            . +   ...++    +.+...+.++.+ .+
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------~-~---~~~~~----l~~~~~i~~~~~~~i  202 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------E-E---ILVER----LKKNVKIEVLTNTVV  202 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------C-H---HHHHH----HHhcCCeEEEeCCce
Confidence            56999999999999999999999889999998885540            0 0   11222    233335666554 77


Q ss_pred             EEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .++.-+. ..+.+++..       +++.++.+|.+++++|..|+..
T Consensus       203 ~ei~G~~v~~v~l~~~~-------~~~~~~~~~gvf~~iG~~p~~~  241 (305)
T COG0492         203 KEILGDDVEGVVLKNVK-------GEEKELPVDGVFIAIGHLPNTE  241 (305)
T ss_pred             eEEecCccceEEEEecC-------CceEEEEeceEEEecCCCCchH
Confidence            7777654 566676632       2345889999999999998764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.35  E-value=0.00019  Score=73.81  Aligned_cols=34  Identities=12%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~  144 (441)
                      +|+|||||++||++|..|++.| .+|+|+|+.+.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            7999999999999999999988 599999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02568 polyamine oxidase

Probab=97.33  E-value=0.00023  Score=75.55  Aligned_cols=38  Identities=18%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCC-----CeEEEEcCCCCcc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKI-----YDAVCISPRNHMV  145 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g-----~~Vtvie~~~~~~  145 (441)
                      +.++|+|||||++||++|..|.+.|     ++|+|+|++++.+
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            3568999999999999999999876     8999999998764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.33  E-value=0.00058  Score=71.19  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      ..|+|+|||+|..|+..|..|+..+.+|+++.+.....           .  ....  +.        ...++ +....+
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-----------~--~~~~--~~--------~~~~v-~~~~~I  258 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-----------T--YEKL--PV--------PQNNL-WMHSEI  258 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-----------c--cccC--cC--------CCCce-EECCcc
Confidence            46899999999999999999999888999998865321           0  0000  00        00111 112223


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIK  235 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip  235 (441)
                      ..+. +++.|.++++           ..+++|.||+|||..+++|-++
T Consensus       259 ~~~~-~~g~V~f~DG-----------~~~~~D~Ii~~TGy~~~~pfL~  294 (461)
T PLN02172        259 DTAH-EDGSIVFKNG-----------KVVYADTIVHCTGYKYHFPFLE  294 (461)
T ss_pred             ccee-cCCeEEECCC-----------CCccCCEEEECCcCCccccccC
Confidence            3332 2344666553           2578999999999999877544

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.30  E-value=0.00022  Score=76.93  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++.+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            36789999999999999999999999999999975

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.29  E-value=0.00028  Score=74.01  Aligned_cols=34  Identities=18%  Similarity=0.104  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||+|++|+++|..|.+.|++|+++|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5689999999999999999999999999999775

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.29  E-value=0.00023  Score=70.61  Aligned_cols=31  Identities=13%  Similarity=0.173  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +|+|||||.+|+++|..|++.|++|+|+|++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            5899999999999999999999999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00027  Score=71.56  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++.+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            36799999999999999999999999999999875

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.23  E-value=0.00035  Score=76.77  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+++|+|||||++|+.+|..|.+.|++|+|+|+++++
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            34678999999999999999999999999999998654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.22  E-value=0.00032  Score=70.83  Aligned_cols=34  Identities=12%  Similarity=0.016  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            4589999999999999999999999999999975

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00042  Score=70.23  Aligned_cols=40  Identities=13%  Similarity=0.216  Sum_probs=36.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF  146 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~  146 (441)
                      +...+|+|||+|.+||.+|..|.+.||+|+|+|.+++++-
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG   44 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence            3367999999999999999999999999999999998863

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.21  E-value=0.00029  Score=72.81  Aligned_cols=35  Identities=17%  Similarity=0.088  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|||||||+||+.||..+++.|.+|+|||+.+.++
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lG   35 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLG   35 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSST
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCC
Confidence            58999999999999999999999999999998764

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.21  E-value=0.00036  Score=70.63  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+|+|||||++|+++|..|++.|.+|+|+|++++.+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            379999999999999999999999999999988765

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02612 phytoene desaturase

Probab=97.17  E-value=0.00047  Score=73.83  Aligned_cols=38  Identities=16%  Similarity=0.240  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+++|+|||||++||++|..|.+.|++|+|+|++++.
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~  128 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL  128 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            33679999999999999999999999999999997653

>PTZ00367 squalene epoxidase; Provisional

Probab=97.14  E-value=0.00048  Score=73.51  Aligned_cols=34  Identities=9%  Similarity=0.119  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            5689999999999999999999999999999975

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.14  E-value=0.00044  Score=69.25  Aligned_cols=39  Identities=13%  Similarity=0.159  Sum_probs=27.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCccccc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMVFTP  148 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~~~~  148 (441)
                      .++++||.||++|++|..|...+ .++..+|+.+.+.|.+
T Consensus         3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~   42 (341)
T PF13434_consen    3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP   42 (341)
T ss_dssp             ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG
T ss_pred             eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC
Confidence            47999999999999999998754 8999999999887654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.14  E-value=0.0012  Score=74.52  Aligned_cols=167  Identities=18%  Similarity=0.140  Sum_probs=105.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .+++|+|||||..|+.+|..+.+.|.+||++.+++...+ |          .   ....+...   .  ..++.++.. .
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~m-p----------a---~~~e~~~a---~--eeGV~~~~~~~  506 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEM-P----------A---RVEELHHA---L--EEGINLAVLRA  506 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccc-c----------c---cHHHHHHH---H--HCCCEEEeCcc
Confidence            478999999999999999999999999999988753211 0          0   00111111   1  235555432 3


Q ss_pred             EEEEeCC--CCEEE---EE---e--cCCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561          187 CIGIDTD--KHEVY---CE---T--VNNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI  253 (441)
Q Consensus       187 v~~id~~--~~~v~---~~---~--~~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~  253 (441)
                      ++.+..+  ...+.   +.   .  .+..+.   ...+++.++++|.||+|+|..|+.. +...                
T Consensus       507 p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~----------------  569 (944)
T PRK12779        507 PREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDA----------------  569 (944)
T ss_pred             eEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhc----------------
Confidence            4444322  11121   11   0  000000   1124456799999999999887632 1100                


Q ss_pred             HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561          254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA  332 (441)
Q Consensus       254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A  332 (441)
                                     ..++|+.            .. |.|.||+ +++| +.|+|||+|||+         ..+.+++.|
T Consensus       570 ---------------~~gle~~------------~~-G~I~vd~~~~~T-s~pgVFAaGD~~---------~G~~~vv~A  611 (944)
T PRK12779        570 ---------------EPGLKTN------------KW-GTIEVEKGSQRT-SIKGVYSGGDAA---------RGGSTAIRA  611 (944)
T ss_pred             ---------------ccCceEC------------CC-CCEEECCCCCcc-CCCCEEEEEcCC---------CChHHHHHH
Confidence                           0001111            11 7899997 5888 999999999999         235799999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 013561          333 ERQGKYLAELFNKKIG  348 (441)
Q Consensus       333 ~~qg~~aA~nI~~~l~  348 (441)
                      +.+|+.||.+|.++|.
T Consensus       612 i~eGr~AA~~I~~~L~  627 (944)
T PRK12779        612 AGDGQAAAKEIVGEIP  627 (944)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999985

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.13  E-value=0.00054  Score=74.32  Aligned_cols=36  Identities=8%  Similarity=0.098  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+||++|..|++. |++|+|||+.+..
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            56899999999999999999995 9999999998643

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.13  E-value=0.00039  Score=72.83  Aligned_cols=35  Identities=11%  Similarity=0.134  Sum_probs=32.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||||.+|+++|..|++.|++|+|+|++++.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            58999999999999999999999999999998765

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.12  E-value=0.00047  Score=71.43  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDT----KIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~  142 (441)
                      +|+||||||+|+++|..|++    .|++|+|||+.+
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            69999999999999999998    799999999943

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.0025  Score=65.17  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC---CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK---IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~~~~~  145 (441)
                      +++|+|||||+.|+.+|..|.+.   ...|+|||+.+.++
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            35899999999999999999652   12399999998774

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.10  E-value=0.0027  Score=71.57  Aligned_cols=191  Identities=17%  Similarity=0.131  Sum_probs=115.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      +++|+|||||..|+.+|..+.+. |. +|+++++++.... +.         ..    ..+...   +  ..++.++.. 
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~M-pa---------~~----eEl~~a---l--eeGVe~~~~~  726 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYM-PA---------SR----EELEEA---L--EDGVDFKELL  726 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccc-cc---------CH----HHHHHH---H--HcCCEEEeCC
Confidence            78999999999999999988775 75 7999998763210 00         00    112222   1  135665543 


Q ss_pred             EEEEEeCCCCEEEEEec-----CCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHH
Q 013561          186 SCIGIDTDKHEVYCETV-----NNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL  257 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~-----~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i  257 (441)
                      .+..++  ++.+.+...     +..+.   ...+++.++++|.||+|+|..|+...++..                    
T Consensus       727 ~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~--------------------  784 (1012)
T TIGR03315       727 SPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN--------------------  784 (1012)
T ss_pred             ceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhc--------------------
Confidence            344444  222332210     00000   012444579999999999988764211100                    


Q ss_pred             HHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHHHHHH
Q 013561          258 LLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQG  336 (441)
Q Consensus       258 ~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg  336 (441)
                        .           +++            +.. |+|.||++ ++| +.|+|||+|||+         ..|.++..|+.||
T Consensus       785 --G-----------L~l------------d~~-G~I~VD~~~~~T-s~pgVFAaGD~a---------~GP~tVv~AIaqG  828 (1012)
T TIGR03315       785 --G-----------IPL------------DEY-GWPVVNQATGET-NITNVFVIGDAN---------RGPATIVEAIADG  828 (1012)
T ss_pred             --C-----------ccc------------CCC-CCEEeCCCCCcc-CCCCEEEEeCcC---------CCccHHHHHHHHH
Confidence              0           011            111 78999986 888 999999999998         2468999999999


Q ss_pred             HHHHHHHHHHhccccCCCccccc----CCCCCCCceeecceeEEEecC
Q 013561          337 KYLAELFNKKIGEQDGGKALSAK----DINLGDPFVYKHLGSMATVGR  380 (441)
Q Consensus       337 ~~aA~nI~~~l~~~~~g~~~~~~----~~~~~~~f~~~~~g~~~~lG~  380 (441)
                      +.||.+|.+...    .+....+    +.+...+|.|..+|.+...+.
T Consensus       829 r~AA~nIl~~~~----~~~~~~~~~~~~~~~~~~~~Y~~kG~la~~~~  872 (1012)
T TIGR03315       829 RKAANAILSREG----LNSDVDKVFPINEEVRLAEVYQKKGILVIDDH  872 (1012)
T ss_pred             HHHHHHHhcccc----CCcccccccccccccccchhhccCcceeccCc
Confidence            999999986542    1110000    001125677888887765553

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.09  E-value=0.00047  Score=69.74  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+|||||.+|+++|..|++.|++|+|+|+.+.
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            699999999999999999999999999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.07  E-value=0.00061  Score=72.02  Aligned_cols=36  Identities=11%  Similarity=0.180  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +..+|+|||||.+|+.+|..|++.|.+|+|+|+++.
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~   40 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL   40 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            357899999999999999999999999999999754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.06  E-value=0.0031  Score=68.84  Aligned_cols=166  Identities=18%  Similarity=0.179  Sum_probs=106.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|+|||||+.|+.+|..+.+.|. +||++.+.+...+ +.         ...    .+..    + +..++.|+.. 
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~-~~---------~~~----e~~~----~-~~~Gv~~~~~~  527 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANM-PG---------SKK----EVKN----A-REEGANFEFNV  527 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCC-CC---------CHH----HHHH----H-HHcCCeEEecc
Confidence            46899999999999999998888886 6999988764321 00         000    1111    1 1245666543 


Q ss_pred             EEEEEeC-CCCEE---EEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCC-CCCcccccccccCHhHHH
Q 013561          186 SCIGIDT-DKHEV---YCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFG-IKGVKENAYFLREVNHAQ  251 (441)
Q Consensus       186 ~v~~id~-~~~~v---~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~-ipG~~~~~~~l~~~~~a~  251 (441)
                      .++++.. +++.+   .+...     +.++.    ...+++.++++|.||+|+|..|+... +...              
T Consensus       528 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~--------------  593 (654)
T PRK12769        528 QPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESH--------------  593 (654)
T ss_pred             CcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccccc--------------
Confidence            4555532 22222   22110     01110    11244567999999999999887431 1110              


Q ss_pred             HHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC----CcccCCCCCEEEecccccccccCCCCCCCc
Q 013561          252 EIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE----WLRAPSVEDVFALGDCAGFLEQTGKPVLPA  327 (441)
Q Consensus       252 ~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~  327 (441)
                                         ++++            +.. |.|.||+    ++|| +.|+|||+||++         ..+.
T Consensus       594 -------------------gl~~------------~~~-G~i~vd~~~~~~~~T-s~~gVfAaGD~~---------~g~~  631 (654)
T PRK12769        594 -------------------GVTV------------DKW-GRIIADVESQYRYQT-SNPKIFAGGDAV---------RGAD  631 (654)
T ss_pred             -------------------CCcC------------CCC-CCEEeCCCcccCccc-CCCCEEEcCCcC---------CCCc
Confidence                               0111            111 7799986    4899 999999999998         2357


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc
Q 013561          328 LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       328 ~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      +++.|+.||+.||.+|.++|.
T Consensus       632 ~vv~Ai~~Gr~AA~~I~~~L~  652 (654)
T PRK12769        632 LVVTAMAEGRHAAQGIIDWLG  652 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            899999999999999999984

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.05  E-value=0.0026  Score=66.52  Aligned_cols=165  Identities=19%  Similarity=0.168  Sum_probs=106.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      ..++|+|||||+.|+.+|..+.+.|. +||||++.+.....        .  ..    ..+..    +. ..++.++.. 
T Consensus       281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~--------~--~~----~e~~~----~~-~~GV~~~~~~  341 (467)
T TIGR01318       281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMP--------G--SR----REVAN----AR-EEGVEFLFNV  341 (467)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCC--------C--CH----HHHHH----HH-hcCCEEEecC
Confidence            36899999999999999999888885 79999987643210        0  00    11111    11 246666554 


Q ss_pred             EEEEEeCC-CCEE---EEEec-----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHH
Q 013561          186 SCIGIDTD-KHEV---YCETV-----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQ  251 (441)
Q Consensus       186 ~v~~id~~-~~~v---~~~~~-----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~  251 (441)
                      .++++..+ +..+   .+...     +.++.    ..++++..+++|.||+|+|..|+...+ .+.              
T Consensus       342 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~--------------  407 (467)
T TIGR01318       342 QPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGH--------------  407 (467)
T ss_pred             CcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccccc--------------
Confidence            45555432 2222   22110     00010    012344579999999999998874311 110              


Q ss_pred             HHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeC----CCcccCCCCCEEEecccccccccCCCCCCCc
Q 013561          252 EIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVD----EWLRAPSVEDVFALGDCAGFLEQTGKPVLPA  327 (441)
Q Consensus       252 ~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd----~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~  327 (441)
                                         ++++            +.. |+|.||    ++++| +.|+|||+|||+.         .+.
T Consensus       408 -------------------gl~~------------~~~-g~i~vd~~~~~~~~T-~~~gVfa~GD~~~---------~~~  445 (467)
T TIGR01318       408 -------------------GITL------------DSW-GRIITGDVSYLPYQT-TNPKIFAGGDAVR---------GAD  445 (467)
T ss_pred             -------------------CccC------------CCC-CCEEeCCccccCccC-CCCCEEEECCcCC---------Ccc
Confidence                               0011            111 779999    67898 9999999999982         356


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 013561          328 LAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       328 ~a~~A~~qg~~aA~nI~~~l  347 (441)
                      ++..|+.+|+.||.+|.++|
T Consensus       446 ~~~~Ai~~G~~aA~~i~~~L  465 (467)
T TIGR01318       446 LVVTAVAEGRQAAQGILDWL  465 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999999887

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.01  E-value=0.00068  Score=69.17  Aligned_cols=33  Identities=9%  Similarity=0.086  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      .+|+|||||.+|+++|..|++.  |++|+|+|+.+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            5899999999999999999998  99999999975

>TIGR02730 carot_isom carotene isomerase

Probab=97.00  E-value=0.00065  Score=71.56  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||||.+||++|..|++.|++|+|+|+++..+
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G   36 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG   36 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            69999999999999999999999999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.99  E-value=0.0027  Score=71.34  Aligned_cols=164  Identities=18%  Similarity=0.132  Sum_probs=104.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-C-CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-I-YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g-~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      +++|||||||..|+.+|..+.+. | .+|+++.+++.... +.         .    ...+...   +.  .++.++.. 
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~M-PA---------~----~eEle~A---le--eGVe~~~~~  728 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEM-PA---------W----REEYEEA---LE--DGVEFKELL  728 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccc-cc---------c----HHHHHHH---HH--cCCEEEeCC
Confidence            78999999999999999988776 4 38999998763210 10         0    0112222   11  35665543 


Q ss_pred             EEEEEeCCCCEEEEEe-----cCCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHH
Q 013561          186 SCIGIDTDKHEVYCET-----VNNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL  257 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~-----~~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i  257 (441)
                      .+..++.+. .+.+..     .+..+.   ...+++.++++|.||+|+|..|+...++..                    
T Consensus       729 ~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~--------------------  787 (1019)
T PRK09853        729 NPESFDADG-TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN--------------------  787 (1019)
T ss_pred             ceEEEEcCC-cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhc--------------------
Confidence            445554322 222210     000000   011334579999999999998764311100                    


Q ss_pred             HHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHH
Q 013561          258 LLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGK  337 (441)
Q Consensus       258 ~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~  337 (441)
                        .           +++            +.. |+|.||+++|| +.|+|||+|||+         ..|.++..|+.||+
T Consensus       788 --G-----------L~l------------d~~-G~I~VDetlqT-s~pgVFAaGD~a---------~Gp~tvv~Ai~qGr  831 (1019)
T PRK09853        788 --G-----------IPL------------DKK-GWPVVDANGET-SLTNVYMIGDVQ---------RGPSTIVAAIADAR  831 (1019)
T ss_pred             --C-----------ccc------------cCC-CCEEeCCCccc-CCCCEEEEeccc---------cCchHHHHHHHHHH
Confidence              0           010            111 78999999999 999999999998         24679999999999


Q ss_pred             HHHHHHHHHhc
Q 013561          338 YLAELFNKKIG  348 (441)
Q Consensus       338 ~aA~nI~~~l~  348 (441)
                      .||.||...+.
T Consensus       832 ~AA~nI~~~~~  842 (1019)
T PRK09853        832 RAADAILSREG  842 (1019)
T ss_pred             HHHHHHhhhcC
Confidence            99999997663

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=96.97  E-value=0.0008  Score=68.35  Aligned_cols=37  Identities=11%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~  145 (441)
                      ..||||||||.|||+||.+|-..| .+|+|+|..++++
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            458999999999999999998655 5899999999886

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.97  E-value=0.00083  Score=70.92  Aligned_cols=36  Identities=11%  Similarity=0.160  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +..+|+|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~   40 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL   40 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            356899999999999999999999999999999863

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.97  E-value=0.00074  Score=69.25  Aligned_cols=33  Identities=24%  Similarity=0.167  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+|||||.+|+++|.+|++.|++|+|+|+...
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999753

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=96.96  E-value=0.00076  Score=67.91  Aligned_cols=32  Identities=9%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            69999999999999999999999999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02676 polyamine oxidase

Probab=96.95  E-value=0.00089  Score=70.39  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++||++|..|++.|. +|+|+|++++++
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG   63 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            5689999999999999999999998 699999998764

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.90  E-value=0.00083  Score=74.53  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~  144 (441)
                      +|+||||||||+++|..|++.  |++|+|+|+++..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            799999999999999999987  8999999998753

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.88  E-value=0.0011  Score=69.40  Aligned_cols=34  Identities=15%  Similarity=0.050  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|||||+|.+|+++|..+++.|.+|+|+|+.+
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4589999999999999999999999999999976

>PRK06996 hypothetical protein; Provisional

Probab=96.86  E-value=0.0012  Score=67.41  Aligned_cols=34  Identities=12%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC----CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI----YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g----~~Vtvie~~~  142 (441)
                      ..+|+||||||+|+++|..|++.|    .+|+|+|+.+
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            468999999999999999999886    4799999974

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.84  E-value=0.019  Score=64.23  Aligned_cols=21  Identities=24%  Similarity=-0.008  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhc
Q 013561          328 LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       328 ~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      +++.||.+|+.++.+|.++|.
T Consensus       750 tvv~A~as~k~~~~~i~~~l~  770 (1028)
T PRK06567        750 SVVKALASSKEGYDAINKKLI  770 (1028)
T ss_pred             HHHHHHHHHHhHHHHHHHHHh
Confidence            689999999999999998886

>PLN03000 amine oxidase

Probab=96.84  E-value=0.0012  Score=72.79  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..++|+|||||++|+.+|..|.+.|++|+|+|++++.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            4679999999999999999999999999999997654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.82  E-value=0.0063  Score=69.44  Aligned_cols=151  Identities=14%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      +++|+|||+|+.|+++|..|.+.|. .|+|+|..+...  +                 .+...   +. ..++.++.+ .
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--~-----------------~l~~~---L~-~~GV~i~~~~~  373 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--P-----------------EARAE---AR-ELGIEVLTGHV  373 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--H-----------------HHHHH---HH-HcCCEEEcCCe
Confidence            6799999999999999999999994 689998775331  0                 01111   22 235666654 5


Q ss_pred             EEEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          187 CIGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       187 v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      ++.+..+.+  .|.+....       ++..++++|.|+++.|..|+..-..                    .    +   
T Consensus       374 v~~i~g~~~v~~V~l~~~~-------g~~~~i~~D~V~va~G~~Pnt~L~~--------------------~----l---  419 (985)
T TIGR01372       374 VAATEGGKRVSGVAVARNG-------GAGQRLEADALAVSGGWTPVVHLFS--------------------Q----R---  419 (985)
T ss_pred             EEEEecCCcEEEEEEEecC-------CceEEEECCEEEEcCCcCchhHHHH--------------------h----c---
Confidence            667765433  24444211       1234789999999999998752100                    0    0   


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccC-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRL-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                         |.. +++            +... +++.     .| +.|+|||+|||+.          +..+..|+.+|+.||.+|
T Consensus       420 ---g~~-~~~------------~~~~~~~~~-----~t-~v~gVyaaGD~~g----------~~~~~~A~~eG~~Aa~~i  467 (985)
T TIGR01372       420 ---GGK-LAW------------DAAIAAFLP-----GD-AVQGCILAGAANG----------LFGLAAALADGAAAGAAA  467 (985)
T ss_pred             ---CCC-eee------------ccccCceec-----CC-CCCCeEEeeccCC----------ccCHHHHHHHHHHHHHHH
Confidence               000 000            0000 1211     14 7899999999982          346778999999999999


Q ss_pred             HHHhc
Q 013561          344 NKKIG  348 (441)
Q Consensus       344 ~~~l~  348 (441)
                      +..+.
T Consensus       468 ~~~lg  472 (985)
T TIGR01372       468 ARAAG  472 (985)
T ss_pred             HHHcC
Confidence            88773

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.82  E-value=0.0013  Score=72.00  Aligned_cols=33  Identities=6%  Similarity=0.202  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||.+|+++|..|++.|++|+|+|+..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            589999999999999999999999999999975

>PRK13984 putative oxidoreductase; Provisional

Probab=96.81  E-value=0.0064  Score=65.77  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=99.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC------CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI------YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYF  182 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g------~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~  182 (441)
                      +++|+|||||+.|+.+|..|.+.+      .+|+++.......  .+       ....    ..+.+.   .  ..++.+
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~--~~-------~~~~----~e~~~~---~--~~GV~i  479 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFE--EM-------PADM----EEIEEG---L--EEGVVI  479 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcc--cC-------CCCH----HHHHHH---H--HcCCEE
Confidence            679999999999999999998764      3788874321110  00       0000    011111   1  135555


Q ss_pred             EEE-EEEEEeCCCCEE---EEEec----CCCCC----CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHH
Q 013561          183 YLA-SCIGIDTDKHEV---YCETV----NNGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHA  250 (441)
Q Consensus       183 ~~~-~v~~id~~~~~v---~~~~~----~~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a  250 (441)
                      +.. .++.+..++..+   .+...    +.++.    ..++++.++++|.||+|+|..|+...++..             
T Consensus       480 ~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~-------------  546 (604)
T PRK13984        480 YPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE-------------  546 (604)
T ss_pred             EeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh-------------
Confidence            433 233333222221   11110    00000    011234579999999999998875432210             


Q ss_pred             HHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHH
Q 013561          251 QEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQ  330 (441)
Q Consensus       251 ~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~  330 (441)
                            +...           +++.             . |+|.||+++|| ++|+|||+|||+.         .+ .+.
T Consensus       547 ------~~~~-----------l~~~-------------~-G~i~vd~~~~T-s~~gVfAaGD~~~---------~~-~~v  584 (604)
T PRK13984        547 ------LKSK-----------LEFV-------------R-GRILTNEYGQT-SIPWLFAGGDIVH---------GP-DII  584 (604)
T ss_pred             ------hccC-----------cccc-------------C-CeEEeCCCCcc-CCCCEEEecCcCC---------ch-HHH
Confidence                  0000           0000             1 77999999999 9999999999992         23 457


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 013561          331 VAERQGKYLAELFNKKIG  348 (441)
Q Consensus       331 ~A~~qg~~aA~nI~~~l~  348 (441)
                      .|+.+|+.||.+|+++|.
T Consensus       585 ~Ai~~G~~AA~~I~~~L~  602 (604)
T PRK13984        585 HGVADGYWAAEGIDMYLR  602 (604)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            899999999999999985

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.80  E-value=0.0013  Score=65.77  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||||.+|+++|..|.++|++|+|+|++...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            458999999999999999999999999999997644

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.79  E-value=0.0012  Score=67.86  Aligned_cols=33  Identities=15%  Similarity=0.109  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|||||+|.||+.||..+++.|.+|+|+|+.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence            599999999999999999999999999999876

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=96.78  E-value=0.0018  Score=67.60  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|.+|++.  |.+|+|+|++.
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            45899999999999999999987  89999999864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.75  E-value=0.0014  Score=68.49  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|||+|.|||.||..+++.|.+|+|+|+.+
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999999999999999999999999999964

>PRK07121 hypothetical protein; Validated

Probab=96.73  E-value=0.0024  Score=67.30  Aligned_cols=36  Identities=14%  Similarity=0.063  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+|.||+.||..+++.|.+|+|+|+.+..
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            348999999999999999999999999999998653

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.72  E-value=0.0085  Score=63.02  Aligned_cols=48  Identities=25%  Similarity=0.291  Sum_probs=41.6

Q ss_pred             Ccee-eCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIG-VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~-Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|. +|+++|| +.|+|||+|||+.         .+.++..|+.+|+.||.+|.++|.
T Consensus       431 G~i~~~~~~~~T-s~~gVfAaGD~~~---------g~~~~~~Av~~G~~AA~~i~~~L~  479 (485)
T TIGR01317       431 GNISAGYDDYST-SIPGVFAAGDCRR---------GQSLIVWAINEGRKAAAAVDRYLM  479 (485)
T ss_pred             CCEEecCCCceE-CCCCEEEeeccCC---------CcHHHHHHHHHHHHHHHHHHHHHh
Confidence            6674 5678999 9999999999982         356899999999999999999996

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.70  E-value=0.002  Score=68.15  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+|.||++||..+++.|.+|+|+|+.+..
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~   96 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA   96 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            458999999999999999999999999999998754

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=96.70  E-value=0.0018  Score=69.15  Aligned_cols=34  Identities=9%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||..|+++|..|++.|++|+|||+.+
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            3589999999999999999999999999999975

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.70  E-value=0.006  Score=60.57  Aligned_cols=33  Identities=12%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ..+|+|||+|.+|.+.|..|++.|-+|+||||+
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            457999999999999999999999999999996

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.69  E-value=0.0016  Score=67.51  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~  144 (441)
                      +|||||+|.||++||..+++.| .+|+|+|+.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            4999999999999999999999 999999998654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.65  E-value=0.0017  Score=69.87  Aligned_cols=55  Identities=20%  Similarity=0.092  Sum_probs=41.5

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.+| ++|++||+|+|+.-  ..|..... .....|+-.|+.+++++.+++.
T Consensus       356 GGi~vd~~~~t-~I~GLyAaGE~~~g--~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~  411 (589)
T PRK08641        356 GGLWVDYDQMT-NIPGLFAAGECDYS--YHGANRLGANSLLSAIYGGMVAGPNAVEYIK  411 (589)
T ss_pred             CCeEECCCCCe-ECCCEEECcccccC--CCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999 89999999999732  12332121 2456788899999999987764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.61  E-value=0.018  Score=62.70  Aligned_cols=166  Identities=19%  Similarity=0.145  Sum_probs=105.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|+|||+|..|+.+|..+.+.|. +||++.+++......          ..+    .+...     +..++.|+.. 
T Consensus       450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~----------~~~----e~~~a-----~~eGv~~~~~~  510 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG----------SRK----EVVNA-----REEGVEFQFNV  510 (639)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC----------CHH----HHHHH-----HHcCCeEEecc
Confidence            47899999999999999998888885 799998876442110          000    11111     1235665544 


Q ss_pred             EEEEEeCC-CCEEE---E---EecC--CCCC----CCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHH
Q 013561          186 SCIGIDTD-KHEVY---C---ETVN--NGKL----SHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQ  251 (441)
Q Consensus       186 ~v~~id~~-~~~v~---~---~~~~--~~~~----~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~  251 (441)
                      .+++|..+ ++.|.   +   ....  .+++    ...++++.+++|.||+|+|..|+...+ ...              
T Consensus       511 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~--------------  576 (639)
T PRK12809        511 QPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGS--------------  576 (639)
T ss_pred             CCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccccc--------------
Confidence            34555321 22222   1   1100  0110    112445689999999999988864321 110              


Q ss_pred             HHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC----CcccCCCCCEEEecccccccccCCCCCCCc
Q 013561          252 EIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE----WLRAPSVEDVFALGDCAGFLEQTGKPVLPA  327 (441)
Q Consensus       252 ~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~  327 (441)
                                         ++++            +.. |.|.||+    ++|| +.|+|||+|||+.         .+.
T Consensus       577 -------------------gl~~------------~~~-G~i~vd~~~~~~~~T-s~~gVfA~GD~~~---------g~~  614 (639)
T PRK12809        577 -------------------GIKL------------DKW-GLIQTGDVGYLPTQT-HLKKVFAGGDAVH---------GAD  614 (639)
T ss_pred             -------------------Cccc------------CCC-CCEEeCCCcccCccc-CCCCEEEcCCCCC---------Cch
Confidence                               0010            011 6788875    4889 9999999999982         357


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc
Q 013561          328 LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       328 ~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      ++..|+.+|+.||.+|+.+|.
T Consensus       615 ~vv~Ai~~Gr~AA~~i~~~l~  635 (639)
T PRK12809        615 LVVTAMAAGRQAARDMLTLFD  635 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999986

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.60  E-value=0.0084  Score=68.38  Aligned_cols=167  Identities=17%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|+|||||..|+.+|..+.+.|.+ |+++.++......             . ....++..     +..++.++.. 
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~-------------a-~~~e~~~a-----~eeGI~~~~~~  630 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAP-------------A-RIEEIRHA-----KEEGIDFFFLH  630 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCC-------------C-CHHHHHHH-----HhCCCEEEecC
Confidence            478999999999999999999998874 8888765432100             0 00011111     1235555433 


Q ss_pred             EEEEEeC-CCCE---EEEEec-----CCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561          186 SCIGIDT-DKHE---VYCETV-----NNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI  253 (441)
Q Consensus       186 ~v~~id~-~~~~---v~~~~~-----~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~  253 (441)
                      .++++.. +++.   +.+...     +.+++   ...+++.++++|.||+|+|..|+..-+... .              
T Consensus       631 ~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~--------------  695 (1006)
T PRK12775        631 SPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-P--------------  695 (1006)
T ss_pred             CcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-C--------------
Confidence            3344422 1222   222210     01010   012334579999999999998875321110 0              


Q ss_pred             HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-----CcccCCCCCEEEecccccccccCCCCCCCch
Q 013561          254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-----WLRAPSVEDVFALGDCAGFLEQTGKPVLPAL  328 (441)
Q Consensus       254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-----~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~  328 (441)
                                       ++++            +.. |.|.||+     +++| ++|+|||+|||+         ..+.+
T Consensus       696 -----------------gl~l------------~~~-G~I~vd~~~v~~~~~T-s~pgVFAaGDv~---------~G~~~  735 (1006)
T PRK12775        696 -----------------GLAL------------NKW-GNIAADDGKLESTQST-NLPGVFAGGDIV---------TGGAT  735 (1006)
T ss_pred             -----------------Cccc------------CCC-CcEEeCCCccccCcCC-CCCCEEEecCcC---------CCccH
Confidence                             0000            001 6677775     7888 999999999998         23679


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 013561          329 AQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       329 a~~A~~qg~~aA~nI~~~l~  348 (441)
                      ++.|+.+|+.||.+|.++|.
T Consensus       736 vv~Ai~~Gr~AA~~I~~~L~  755 (1006)
T PRK12775        736 VILAMGAGRRAARSIATYLR  755 (1006)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999996

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=96.57  E-value=0.0029  Score=64.75  Aligned_cols=34  Identities=9%  Similarity=0.027  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~-~Vtvie~~~  142 (441)
                      ..+|+|||||.+|+++|..|++. |. +|+|+|+..
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            56899999999999999999985 85 999999974

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.52  E-value=0.0027  Score=68.88  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||..|+++|..|++.|++|+|||+.+
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            4689999999999999999999999999999975

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.49  E-value=0.0036  Score=62.69  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~  144 (441)
                      .++|+|||||-.+.+.+..|.+.+  .+|+++-|+..+
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            679999999999999999998755  589999997644

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.40  E-value=0.0038  Score=60.62  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+++|||+|.+|+.+|..+++.|++|.|+|++++++
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            479999999999999999999999999999999987

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.40  E-value=0.0039  Score=67.01  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+|.+|+++|..+++.|.+|+|+|+.+..
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~   44 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            458999999999999999999999999999998653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=96.39  E-value=0.0042  Score=64.41  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||+|.+|+.+|..|++.|.+|.++|++++.+
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yG   40 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYG   40 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcC
Confidence            4689999999999999999999999999999999775

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=96.38  E-value=0.0038  Score=60.88  Aligned_cols=35  Identities=9%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~  145 (441)
                      +++|||||++|..+|.+|++.+ .+|.|+|+.++..
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            6899999999999999999987 7999999987554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.32  E-value=0.0035  Score=66.41  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|||||+| +|+++|..+++.|.+|+|+|+.+.
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~   40 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK   40 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence            3489999999 999999999999999999998764

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=96.29  E-value=0.0037  Score=65.65  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      +|+|||||.+|+++|..|++.  |.+|+|+|+.+
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            699999999999999999986  89999999964

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.27  E-value=0.0037  Score=67.07  Aligned_cols=56  Identities=23%  Similarity=0.188  Sum_probs=41.7

Q ss_pred             CceeeCCCcc----cCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLR----APSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lq----t~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||...|    | ++|+.||+|+|+.. ...|.... -.....|+-.|++|++++.+++.
T Consensus       343 GGi~id~~~~v~~~t-~I~GLyAaGe~a~~-g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~  403 (566)
T TIGR01812       343 GGIPTDYTGRVICET-IVKGLFAAGECACV-SVHGANRLGGNSLLELVVFGRIAGEAAAEYAA  403 (566)
T ss_pred             CCeEECcCcccccCc-ccCCeeeccccccc-CcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999    7 89999999999731 01222111 13567788999999999987764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.26  E-value=0.0053  Score=50.29  Aligned_cols=34  Identities=29%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||||..|..-+..|.+.|.+||||.+..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            6799999999999999999999999999997763

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=96.23  E-value=0.0046  Score=65.05  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||..|+++|..|++  .|.+|+|+|+.+.
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            4589999999999999999987  4789999999753

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.23  E-value=0.0052  Score=65.50  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|.|||.||..+++.|.+|+|+|+.+.
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~   50 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL   50 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence            35899999999999999999999999999999764

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.22  E-value=0.005  Score=61.89  Aligned_cols=37  Identities=11%  Similarity=-0.065  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~  145 (441)
                      +++|||+|||.+||.+|++|++.+.  +|||+|..++.+
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG   49 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG   49 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence            6799999999999999999998764  567799999876

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.21  E-value=0.006  Score=61.01  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.|||+||.||..|.-|+..||+|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            79999999999999999999999999999876

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.20  E-value=0.006  Score=65.26  Aligned_cols=101  Identities=18%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC-  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v-  187 (441)
                      .++-+|||||--|+++|..|...|.+|+|++-.+...         .-.++.. ....+++.   + +..++.|+.+.. 
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------erQLD~~-ag~lL~~~---l-e~~Gi~~~l~~~t  210 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------ERQLDRT-AGRLLRRK---L-EDLGIKVLLEKNT  210 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------HHhhhhH-HHHHHHHH---H-Hhhcceeecccch
Confidence            5678999999999999999999999999997766432         1122211 11122222   1 234666655432 


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      +.|-.+.+...+...+ +        ..+++|.||.|+|-+|+.-
T Consensus       211 ~ei~g~~~~~~vr~~D-G--------~~i~ad~VV~a~GIrPn~e  246 (793)
T COG1251         211 EEIVGEDKVEGVRFAD-G--------TEIPADLVVMAVGIRPNDE  246 (793)
T ss_pred             hhhhcCcceeeEeecC-C--------CcccceeEEEecccccccH
Confidence            2222222222222221 1        3789999999999999763

>PLN02976 amine oxidase

Probab=96.18  E-value=0.0052  Score=70.66  Aligned_cols=36  Identities=11%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .++|+|||+|++|+.+|..|.+.|++|+|||+++.+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            578999999999999999999999999999997654

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.15  E-value=0.0052  Score=66.54  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||.||+.||..+++.|.+|+|+|+...
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~   63 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP   63 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence            45899999999999999999999999999999754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.14  E-value=0.0047  Score=66.59  Aligned_cols=34  Identities=21%  Similarity=0.151  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||.|||.||..+++.|.+|+|+|+..
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~   45 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF   45 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            3489999999999999999999999999999964

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.0055  Score=62.31  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ..+|||||||.||.++|...++.|.+.+++..+
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            568999999999999999999999999998765

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.13  E-value=0.0061  Score=66.26  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||.|||.||..+++.|.+|+|+|+...
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~   69 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS   69 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            45899999999999999999999999999998543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=96.13  E-value=0.0058  Score=65.29  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||+|.|||.||..+++.|.+|+|+|+.+
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3589999999999999999999999999999987

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=96.13  E-value=0.0046  Score=61.90  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc------CCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT------KIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~------~g~~Vtvie~~~~~~  145 (441)
                      -.+|+|||||||||++|.+|.+      ...+|.|+|+....+
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G  118 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG  118 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence            4589999999999999998854      457999999987654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.13  E-value=0.0043  Score=64.66  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=27.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCC---CeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI---YDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g---~~Vtvie~~~~~  144 (441)
                      +|+|||||+||..+|..|++.+   ++|||||..+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            6999999999999999999876   899999998644

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=96.12  E-value=0.0058  Score=62.59  Aligned_cols=37  Identities=11%  Similarity=0.106  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~  144 (441)
                      +..+|+|||||..|+++|..|++.+  ++|+|+|+.+.+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            3568999999999999999999987  999999998754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.12  E-value=0.0048  Score=66.96  Aligned_cols=55  Identities=24%  Similarity=0.189  Sum_probs=40.4

Q ss_pred             CceeeCCCcc-cCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLR-APSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lq-t~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.+ | ++|++||+|+|+.-  ..|..... .....|+-.|+.|++++..++.
T Consensus       392 GGi~vd~~~~~t-~IpGLYAaGE~agg--~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~  448 (626)
T PRK07803        392 GGVEVDPDTGAA-TVPGLFAAGECAGG--MHGSNRLGGNSLSDLLVFGRRAGLGAADYVR  448 (626)
T ss_pred             CCEEEcCCCCee-ecCCeeEccccccc--cCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence            9999998864 6 89999999998732  12332222 3456788899999999887764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.07  E-value=0.0054  Score=66.32  Aligned_cols=49  Identities=22%  Similarity=0.141  Sum_probs=41.0

Q ss_pred             ceeeC-------------CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          292 QIGVD-------------EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       292 ~I~Vd-------------~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      .|.||             ++++| ++|++||+|||+..    +   ...++..+..+|++++.++..++.
T Consensus       371 Gi~vd~~~~~~~~~~~~~~~~~T-~v~glyA~Ge~~~~----~---~~~l~~~s~~~g~~ag~~~~~~~~  432 (608)
T PRK06854        371 GYWVSGPEDWVPEEYKWGYNRMT-TVEGLFAAGDVVGG----S---PHKFSSGSFAEGRIAAKAAVRYIL  432 (608)
T ss_pred             EEEecCccccccccccccccccc-CCCCEEEeeecCCC----C---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            39999             99999 99999999999731    1   235788889999999999998875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.022  Score=55.88  Aligned_cols=158  Identities=18%  Similarity=0.166  Sum_probs=105.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      ++|+|+|||||-.|+++|..|+-.-..|||+|-.+.+-              .+   ..+.+.   +...+++.++.+ .
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--------------AD---~VLq~k---l~sl~Nv~ii~na~  412 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--------------AD---AVLQDK---LRSLPNVTIITNAQ  412 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh--------------hH---HHHHHH---HhcCCCcEEEecce
Confidence            47999999999999999999997656799998665332              11   112222   344456766554 4


Q ss_pred             EEEEeCCCCEE---EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          187 CIGIDTDKHEV---YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       187 v~~id~~~~~v---~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      -+.|.-+.+.|   ...+..+      +++..+.-+-+++-.|--||+.=++|.                          
T Consensus       413 Ttei~Gdg~kV~Gl~Y~dr~s------ge~~~l~LeGvFVqIGL~PNT~WLkg~--------------------------  460 (520)
T COG3634         413 TTEVKGDGDKVTGLEYRDRVS------GEEHHLELEGVFVQIGLLPNTEWLKGA--------------------------  460 (520)
T ss_pred             eeEEecCCceecceEEEeccC------CceeEEEeeeeEEEEecccChhHhhch--------------------------
Confidence            44554443333   3333322      345577788899999988887544432                          


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                              ||+...             |.|.||....| |.|+|||+|||...+        -+....||.+|..++-+-
T Consensus       461 --------vel~~r-------------GEIivD~~g~T-svpGvFAAGD~T~~~--------yKQIIIamG~GA~AaL~A  510 (520)
T COG3634         461 --------VELNRR-------------GEIIVDARGET-NVPGVFAAGDCTTVP--------YKQIIIAMGEGAKASLSA  510 (520)
T ss_pred             --------hhcCcC-------------ccEEEecCCCc-CCCceeecCcccCCc--------cceEEEEecCcchhhhhh
Confidence                    111111             78999999999 999999999999654        356667777777777655


Q ss_pred             HHHh
Q 013561          344 NKKI  347 (441)
Q Consensus       344 ~~~l  347 (441)
                      ..+|
T Consensus       511 FDyL  514 (520)
T COG3634         511 FDYL  514 (520)
T ss_pred             hhhh
Confidence            5444

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.04  E-value=0.0067  Score=62.45  Aligned_cols=34  Identities=15%  Similarity=0.096  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||+|.+|+.+|..|++.|.+|+|||+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4589999999999999999999999999999864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.03  E-value=0.0057  Score=65.61  Aligned_cols=57  Identities=19%  Similarity=0.143  Sum_probs=41.6

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.||+++|++||+|+|+..- ..|.... -.....|+-.|+.|++++.+++.
T Consensus       347 GGi~vd~~~~t~~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  404 (566)
T PRK06452        347 GGIDVDIDGRNPDIVGLFSAGEAACVS-VHGANRLGSNSLLDTLVFGQVTGRTVVQFLK  404 (566)
T ss_pred             CCeEECCCCCcCCcCCeEecccccccC-CCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999984499999999997410 1232111 12456788999999999987764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.99  E-value=0.0066  Score=64.95  Aligned_cols=36  Identities=19%  Similarity=0.193  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+|++|+++|..+++.|.+|+|||+.+..
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            347999999999999999999999999999997643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.99  E-value=0.0061  Score=65.78  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||.||+.||..+++.|.+|+|+|+..
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~   45 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF   45 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence            3479999999999999999999999999999964

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.99  E-value=0.0086  Score=64.43  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+|.||++||..+++.|.+|+|+|+.+..
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            358999999999999999999999999999998754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=95.96  E-value=0.0053  Score=66.30  Aligned_cols=54  Identities=20%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.+|.+.+| ++|++||+|+|+.-  ..|..... .....+.-.|+.+|+++..++
T Consensus       371 gG~~~d~~~~t-~i~gL~a~Ge~~~~--~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~  425 (603)
T TIGR01811       371 GGLWVDYDQMT-NIPGLFAAGECDFS--QHGANRLGANSLLSAIADGYFALPFTIPNY  425 (603)
T ss_pred             CCeeECCCCcc-cCCCEEECcccccC--cCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 99999999999732  12322211 344567788999999987765

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=95.94  E-value=0.008  Score=63.23  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-C-CeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-I-YDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g-~~Vtvie~~~~  143 (441)
                      ..+|||||||..|+++|..|++. + .+|+|+|+.+.
T Consensus        45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            46999999999999999999985 3 69999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=95.92  E-value=0.0069  Score=65.73  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||.||+.||..+++.|.+|+|+|+..
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~   83 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF   83 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            3479999999999999999999999999999975

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.92  E-value=0.0075  Score=64.56  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|.+|+++|..+++.|.+|+|||+.+.
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~   40 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK   40 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            34799999999999999999999999999999754

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=95.92  E-value=0.0074  Score=65.09  Aligned_cols=44  Identities=20%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          297 EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       297 ~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      ...+| ++|++||+|||+..    |   ...++..+..+|.+++.++..++.
T Consensus       400 ~~~~T-~i~gLyA~Ge~~~~----~---~h~l~~nsl~eg~~ag~~a~~~~~  443 (614)
T TIGR02061       400 YNRMT-TVEGLFTCGDGVGA----S---PHKFSSGSFTEGRIAAKAAVRWIL  443 (614)
T ss_pred             cCCcc-ccCCEEeceecccC----c---chhhHHhHHHHHHHHHHHHHHHHH
Confidence            78889 99999999999732    1   124778888999999999988774

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.91  E-value=0.011  Score=52.40  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISP  140 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~  140 (441)
                      ++++|+|||||..|..-+..|.+.|++|+||++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            378999999999999999999999999999954

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.91  E-value=0.011  Score=59.13  Aligned_cols=100  Identities=11%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc----CCCeEE-EEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT----KIYDAV-CISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vt-vie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      +++|-|||+|+.|-++|..|.+    .|.+|. ||+.+-.+.  -.||+....        ..+..     .+..++.++
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~--kiLPeyls~--------wt~ek-----ir~~GV~V~  411 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME--KILPEYLSQ--------WTIEK-----IRKGGVDVR  411 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh--hhhHHHHHH--------HHHHH-----HHhcCceec
Confidence            5789999999999998888864    567775 444332111  122222211        11111     123566665


Q ss_pred             EE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          184 LA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       184 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      -. .|.++....+.+.++-.++         .++..|.||+|+|..||..
T Consensus       412 pna~v~sv~~~~~nl~lkL~dG---------~~l~tD~vVvavG~ePN~e  452 (659)
T KOG1346|consen  412 PNAKVESVRKCCKNLVLKLSDG---------SELRTDLVVVAVGEEPNSE  452 (659)
T ss_pred             cchhhhhhhhhccceEEEecCC---------CeeeeeeEEEEecCCCchh
Confidence            43 5666655555555544321         4889999999999999876

>PRK12839 hypothetical protein; Provisional

Probab=95.90  E-value=0.0097  Score=63.86  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||+|.+|+++|..+++.|.+|+|||+.+.+
T Consensus         8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            458999999999999999999999999999997643

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.89  E-value=0.0073  Score=65.04  Aligned_cols=33  Identities=21%  Similarity=0.112  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||.|||.||..+++.|.+|+|+|+..
T Consensus         8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~   40 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVF   40 (588)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence            479999999999999999999999999999974

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=95.88  E-value=0.01  Score=62.37  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      ..+|||||||.+|+++|..|++.  +.+|+|+|+.+.
T Consensus         6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~   42 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDS   42 (497)
T ss_pred             cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence            45899999999999999999987  899999999433

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=95.88  E-value=0.012  Score=63.32  Aligned_cols=36  Identities=11%  Similarity=0.091  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||+|.+|+.+|..+++.|.+|+|||+.+..
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            458999999999999999999999999999997643

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=95.87  E-value=0.033  Score=54.20  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .|||||+|-|||+++..+-..|-.|+++|++..+
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence            5999999999999999998777779999997554

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.84  E-value=0.05  Score=58.34  Aligned_cols=166  Identities=19%  Similarity=0.196  Sum_probs=105.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      ..++|+|||+|..|+.+|..+.+.+ .+|+|+.+.+...+.           .   ....+...    . ..++.++.. 
T Consensus       266 ~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~-----------~---~~~~~~~a----~-~~GVki~~~~  326 (564)
T PRK12771        266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP-----------A---HDEEIEEA----L-REGVEINWLR  326 (564)
T ss_pred             CCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCC-----------C---CHHHHHHH----H-HcCCEEEecC
Confidence            3789999999999999999888877 679999876532110           0   00111111    1 235555543 


Q ss_pred             EEEEEeCCC-CE-----EEEEec--CCCCC--CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHH
Q 013561          186 SCIGIDTDK-HE-----VYCETV--NNGKL--SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRK  255 (441)
Q Consensus       186 ~v~~id~~~-~~-----v~~~~~--~~~~~--~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~  255 (441)
                      .+..|..++ +.     +.+...  +.++.  ...+++.++++|.||+|+|..|+...+.+..                 
T Consensus       327 ~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~-----------------  389 (564)
T PRK12771        327 TPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVP-----------------  389 (564)
T ss_pred             CcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhcc-----------------
Confidence            455664432 21     111111  01110  0124456899999999999887543221100                 


Q ss_pred             HHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHH
Q 013561          256 KLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAER  334 (441)
Q Consensus       256 ~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~  334 (441)
                          .+           +             +.. |+|.||+ +++| ++|+|||+|||+.         .|.+++.|++
T Consensus       390 ----gl-----------~-------------~~~-G~i~vd~~~~~t-s~~~Vfa~GD~~~---------g~~~v~~Av~  430 (564)
T PRK12771        390 ----GV-----------E-------------VGR-GVVQVDPNFMMT-GRPGVFAGGDMVP---------GPRTVTTAIG  430 (564)
T ss_pred             ----Cc-----------c-------------cCC-CCEEeCCCCccC-CCCCEEeccCcCC---------CchHHHHHHH
Confidence                00           0             001 7899998 6777 9999999999982         3679999999


Q ss_pred             HHHHHHHHHHHHhc
Q 013561          335 QGKYLAELFNKKIG  348 (441)
Q Consensus       335 qg~~aA~nI~~~l~  348 (441)
                      ||+.+|.+|.++|.
T Consensus       431 ~G~~aA~~i~~~L~  444 (564)
T PRK12771        431 HGKKAARNIDAFLG  444 (564)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999996

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.82  E-value=0.0099  Score=61.59  Aligned_cols=55  Identities=22%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCC-CCchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPV-LPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~-~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||...|| +.|+.||+|.|+.- ...|... .-.....++--|+.||+++...+
T Consensus       332 GGi~vd~~~~t-~i~gLYAaGE~a~~-g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~  387 (433)
T PRK06175        332 GGIKVDLNSKT-SMKNLYAFGEVSCT-GVHGANRLASNSLLEGLVFSKRGAEKINSEI  387 (433)
T ss_pred             CCEEECCCccc-cCCCeEeccccccc-CCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999998 99999999999631 0123211 11245677888999999987655

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=95.81  E-value=0.013  Score=62.95  Aligned_cols=36  Identities=11%  Similarity=0.057  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||+|.+|+.+|..+++.|.+|+|+|+.+..
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            347999999999999999999999999999997643

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.81  E-value=0.0076  Score=64.82  Aligned_cols=56  Identities=20%  Similarity=0.137  Sum_probs=41.0

Q ss_pred             CceeeCCCcccCC------CCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPS------VEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~------~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|| .      +|+.||+|+|+..- ..|..... .....|+-.|++|++++.+++.
T Consensus       353 GGi~vd~~~~t-~~~~g~~I~GLyAaGE~a~~g-~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~  415 (577)
T PRK06069        353 GGIHTDVYGRV-LTADGEWVRGLWAAGEAAAVS-VHGANRLGSNSTAECLVWGRIAGEQAAEYAL  415 (577)
T ss_pred             CCceECCCCcC-cCCCCCEeCCeEecccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999 6      89999999997410 12321111 2356788899999999887764

>PRK08275 putative oxidoreductase; Provisional

Probab=95.80  E-value=0.0084  Score=64.15  Aligned_cols=49  Identities=22%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||++++| ++|++||+|||+..    +    ......|+-.|+.++.++..++.
T Consensus       357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~----~----~~~~~~~~~~G~~a~~~~~~~~~  405 (554)
T PRK08275        357 SGVWVNEKAET-TVPGLYAAGDMASV----P----HNYMLGAFTYGWFAGENAAEYVA  405 (554)
T ss_pred             CcEEECCCCcc-CCCCEEECcccCCc----h----hHHHHHHHHHHHHHHHHHHHHHh
Confidence            58999999999 99999999999732    1    13456688899999999887764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=95.79  E-value=0.0082  Score=65.44  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=41.2

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.||.++|++||+|+|+.. ...|.... -.....|+-.|+++++++..++.
T Consensus       373 GGi~vd~~~~t~~I~GLyAaGE~a~~-g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~  430 (657)
T PRK08626        373 GGIRTNPTGESYGLKGLFSAGEAACW-DMHGFNRLGGNSLAETVVAGMIVGKYVADFCL  430 (657)
T ss_pred             CCceECCCCCCcccCCEEeccccccc-CCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999459999999999742 11232111 12346777899999999987764

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.79  E-value=0.0088  Score=64.29  Aligned_cols=57  Identities=23%  Similarity=0.208  Sum_probs=40.8

Q ss_pred             CceeeCCCcccC-----CCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAP-----SVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~-----~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.||.     ++|++||+|+|+... ..|.... -.....|+-.|+.|++++..++.
T Consensus       352 GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  414 (575)
T PRK05945        352 GGIPVNTDGRVRRSADGLVEGFFAAGECACVS-VHGANRLGSNSLLECVVYGRRTGAAIAEYVQ  414 (575)
T ss_pred             CCeeECCCceeccCCCCccCCeEeeecccccc-ccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence            899999998873     589999999997310 1122111 13456788899999999987663

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.79  E-value=0.013  Score=54.28  Aligned_cols=34  Identities=21%  Similarity=0.025  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||||..|...+..|.+.|.+|||++++.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            6799999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.73  E-value=0.011  Score=62.68  Aligned_cols=55  Identities=20%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|..... .....|.-.|+.|++++....
T Consensus       333 GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~  388 (510)
T PRK08071        333 GGVKTNLDGET-SIPGLYAIGEVACT-GVHGANRLASNSLLEGLVFGKRAAEHILTKA  388 (510)
T ss_pred             CCEEECCCCcc-cCCCeEEccccccc-ccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            88999999999 99999999999731 012321111 245667778889998887543

>TIGR02462 pyranose_ox pyranose oxidase

Probab=95.73  E-value=0.011  Score=62.75  Aligned_cols=35  Identities=11%  Similarity=0.096  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||+||+|+.+|..|++.|++|.+||+.....
T Consensus         2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             cEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            69999999999999999999999999999987654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.72  E-value=0.011  Score=52.21  Aligned_cols=32  Identities=9%  Similarity=0.105  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|||||..|.++|..|+..|++|+++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            69999999999999999999999999998875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR00551 nadB L-aspartate oxidase

Probab=95.66  E-value=0.01  Score=62.50  Aligned_cols=55  Identities=24%  Similarity=0.223  Sum_probs=39.8

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|.-.|+.+++++.+..
T Consensus       334 GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~  389 (488)
T TIGR00551       334 GGISVDDHGRT-TVPGLYAIGEVACT-GLHGANRLASNSLLECLVFGWSAAEDISRRP  389 (488)
T ss_pred             CCEEECCCCcc-cCCCEEECcccccc-ccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence            89999999999 99999999999631 01232111 1244677888999999987654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.64  E-value=0.01  Score=63.26  Aligned_cols=55  Identities=20%  Similarity=0.213  Sum_probs=41.0

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||++.|| .+|++||+|+|+.-.  .|.... -.....|+-.|++|++++.+++.
T Consensus       349 GGi~vd~~~~t-~IpGLyAaGE~~gg~--hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~  404 (543)
T PRK06263        349 GGIRINEDCET-NIPGLFACGEVAGGV--HGANRLGGNALADTQVFGAIAGKSAAKNAE  404 (543)
T ss_pred             CCEEECCCCcc-cCCCeEeccccccCC--CCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence            88999999999 999999999986311  122111 12345788999999999987764

>PRK02106 choline dehydrogenase; Validated

Probab=95.61  E-value=0.014  Score=62.47  Aligned_cols=35  Identities=9%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~  143 (441)
                      ..+++|||||.+|+.+|.+|++ .|++|.|+|+.+.
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            3589999999999999999999 7999999999864

>PRK07395 L-aspartate oxidase; Provisional

Probab=95.57  E-value=0.016  Score=62.01  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|.||+.||..+++ |.+|+|+|+.+.
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~   42 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL   42 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence            3489999999999999999864 899999999764

>PLN02815 L-aspartate oxidase

Probab=95.50  E-value=0.013  Score=63.21  Aligned_cols=55  Identities=13%  Similarity=0.033  Sum_probs=39.6

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|+-.|+.|++++...+
T Consensus       378 GGi~vD~~~~t-~IpGLyAaGE~a~~-G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~  433 (594)
T PLN02815        378 GGVRTGLQGET-NVQGLYAAGEVACT-GLHGANRLASNSLLEALVFARRAVQPSIDHM  433 (594)
T ss_pred             CCeeECCCCce-ecCCEEeccccccc-CCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999 99999999999731 01232111 1245677778899998887554

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.50  E-value=0.016  Score=62.11  Aligned_cols=35  Identities=9%  Similarity=0.110  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+| +|++||...++.|.+|+|+|+.+.+
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4589999999 8999999999999999999998654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.42  E-value=0.05  Score=50.38  Aligned_cols=158  Identities=19%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC-  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v-  187 (441)
                      .|-++|||||-+.++=|..|.+.+.+|.++-|++++.-.                 ....+.   ..+.++++++...+ 
T Consensus       157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-----------------~~Mq~r---a~~npnI~v~~nt~~  216 (322)
T KOG0404|consen  157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-----------------KIMQQR---AEKNPNIEVLYNTVA  216 (322)
T ss_pred             CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-----------------HHHHHH---HhcCCCeEEEechhh
Confidence            567999999999999999999999999999999876511                 011111   22345566554432 


Q ss_pred             EEEeCC---CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTD---KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~---~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      ++.--+   -..+.+++..      .+++.+++.+-|+.|+|-.|++.-+.|-                           
T Consensus       217 ~ea~gd~~~l~~l~ikn~~------tge~~dl~v~GlFf~IGH~Pat~~l~gq---------------------------  263 (322)
T KOG0404|consen  217 VEALGDGKLLNGLRIKNVK------TGEETDLPVSGLFFAIGHSPATKFLKGQ---------------------------  263 (322)
T ss_pred             hhhccCcccccceEEEecc------cCcccccccceeEEEecCCchhhHhcCc---------------------------
Confidence            222111   1234455532      2455688999999999998876544442                           


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                             ||+-.            . |+|+|-+ +-.| |+|++||+||+..-        .-..++.|...|.++|-.-
T Consensus       264 -------ve~d~------------~-GYi~t~pgts~T-svpG~FAAGDVqD~--------kyRQAvTaAgsGciaaldA  314 (322)
T KOG0404|consen  264 -------VELDE------------D-GYIVTRPGTSLT-SVPGVFAAGDVQDK--------KYRQAVTAAGSGCIAALDA  314 (322)
T ss_pred             -------eeecc------------C-ceEEeccCcccc-cccceeeccccchH--------HHHHHHhhhccchhhhhhH
Confidence                   22211            1 7888774 5566 99999999999832        2357788888888887666


Q ss_pred             HHHhc
Q 013561          344 NKKIG  348 (441)
Q Consensus       344 ~~~l~  348 (441)
                      ..+|.
T Consensus       315 e~yL~  319 (322)
T KOG0404|consen  315 ERYLT  319 (322)
T ss_pred             HHHhh
Confidence            65553

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.35  E-value=0.024  Score=51.76  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|||+|..++.+|..|.+.|.+|+++-|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            6899999999999999999999999999998876

...

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.34  E-value=0.043  Score=58.27  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+|||+|||+|..|...|.+|++...+|++.-|+...
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~w  218 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAW  218 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccc
Confidence            4789999999999999999999988889988877543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.29  E-value=0.023  Score=52.50  Aligned_cols=34  Identities=32%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +.++|+|||||-.|...|..|.+.|++||||++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3679999999999999999999999999999753

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=95.24  E-value=0.016  Score=62.36  Aligned_cols=56  Identities=18%  Similarity=0.258  Sum_probs=41.8

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|| ++|++||+|||+... ..|.... -.....|+-.|++|++++..++.
T Consensus       359 GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~  415 (582)
T PRK09231        359 GGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA  415 (582)
T ss_pred             CCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence            89999999999 999999999997421 1232111 12456788899999999987764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=95.19  E-value=0.016  Score=62.24  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=41.4

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|..... .....|+-.|+.|++++..++.
T Consensus       358 GGi~~d~~~~t-~i~GLyAaGe~a~~-G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~  414 (580)
T TIGR01176       358 GGIETDINCET-RIKGLFAVGECASV-GLHGANRLGSNSLAELVVFGRRAGEAAAERAA  414 (580)
T ss_pred             CCeeECcCccc-ccCCeEeeeccccc-CcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence            88999999999 99999999999742 112321111 2456788899999999987653

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.18  E-value=0.018  Score=65.19  Aligned_cols=49  Identities=24%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |+|.||.+++| ++||+||+|||+...        ......|+-.|+.++.++..++.
T Consensus       362 GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~  410 (897)
T PRK13800        362 SGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA  410 (897)
T ss_pred             ceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence            78999999999 999999999998421        23555688899999999987764

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.17  E-value=0.022  Score=66.11  Aligned_cols=36  Identities=17%  Similarity=0.305  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|||||+|.||+.||..++..|.+|+|+|+.+..
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            468999999999999999999999999999998654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.15  E-value=0.023  Score=59.64  Aligned_cols=37  Identities=14%  Similarity=0.197  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ...+|+|||||..|+-+|..++.+|++|+|+|+.+..
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A   47 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA   47 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence            3568999999999999999999999999999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.11  E-value=0.018  Score=52.49  Aligned_cols=34  Identities=12%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +||.|||.|+.|+..|..|+..|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            3799999999999999999999999999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=95.09  E-value=0.024  Score=55.35  Aligned_cols=34  Identities=9%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||-||++|+..|.+.|.++.+|....
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            4589999999999999999999999999998865

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.07  E-value=0.022  Score=61.27  Aligned_cols=57  Identities=16%  Similarity=0.066  Sum_probs=40.4

Q ss_pred             CceeeCCCccc-----CCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRA-----PSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt-----~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|+     +++|++||+|+|+... ..|.... -.....|+-.|+.|++++.+++.
T Consensus       357 GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g-~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~  419 (583)
T PRK08205        357 GGIPTTVDGEVLRDNTTVVPGLYAAGECACVS-VHGANRLGTNSLLDINVFGRRAGIAAAEYAR  419 (583)
T ss_pred             CCeeECCCceEecCCCCCcCCeeeccccccCC-CCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence            89999999885     3799999999997410 1232111 12456678899999999987763

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.06  E-value=0.026  Score=58.62  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.++|+|+|+|.+|+++|..|++.|++|+++|+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            36799999999999999999999999999999875

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.99  E-value=0.023  Score=51.48  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|.|||+|..|...|..++..|++|+++|.++..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            6999999999999999999999999999998643

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK09077 L-aspartate oxidase; Provisional

Probab=94.95  E-value=0.022  Score=60.74  Aligned_cols=55  Identities=16%  Similarity=0.173  Sum_probs=40.6

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|+-.|+.|++++.+.+
T Consensus       354 GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~  409 (536)
T PRK09077        354 GGVMVDLHGRT-DLDGLYAIGEVSYT-GLHGANRMASNSLLECLVYGRSAAEDILSRL  409 (536)
T ss_pred             CCeeECCCCcc-ccCCEEeccccccc-ccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence            89999999999 99999999999731 01232111 1345678889999999998664

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.94  E-value=0.091  Score=52.85  Aligned_cols=42  Identities=10%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCccccc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMVFTP  148 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~~~~  148 (441)
                      +...+++.||-||.-|+.|..|...+ .++..+|+.+.+.|.|
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHp   45 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHP   45 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCC
Confidence            34678999999999999999998754 7899999999887764

>TIGR01810 betA choline dehydrogenase

Probab=94.93  E-value=0.026  Score=60.11  Aligned_cols=33  Identities=6%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~  143 (441)
                      +++|||||.||+.+|.+|++.+ ++|.|+|+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            4899999999999999999987 79999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.92  E-value=0.026  Score=57.76  Aligned_cols=32  Identities=13%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|||+|++|+.+|..+.+.|.+|+|+|+..
T Consensus         2 Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         2 DVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=94.86  E-value=0.028  Score=59.92  Aligned_cols=35  Identities=20%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||.|||.||..++..|.+|+|+|+...
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~   40 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP   40 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            45899999999999999999999999999999653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.77  E-value=0.03  Score=52.70  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|||+|-.|.+.|+.|.+.|++|++||+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            479999999999999999999999999999886

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.76  E-value=0.024  Score=55.35  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ...|-|||||-||-++|.++++.|+.|.++|.++
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            4579999999999999999999999999999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.74  E-value=0.031  Score=58.30  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ||+|||.|++|+++|+.|.+.|++|+++|+++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            6999999999999999999999999999988654

>PRK07512 L-aspartate oxidase; Provisional

Probab=94.73  E-value=0.028  Score=59.51  Aligned_cols=56  Identities=23%  Similarity=0.114  Sum_probs=40.3

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|.... -.....|+-.|+.+++++.....
T Consensus       342 GGi~vd~~~~t-~I~GLyAaGE~a~~-G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~  398 (513)
T PRK07512        342 GGIAVDADGRS-SLPGLWAAGEVAST-GLHGANRLASNSLLEAVVFAARAAEDIAGTPA  398 (513)
T ss_pred             CCEEECCCCcc-ccCCEEeccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999 99999999999731 01232111 12455677889999999986653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=94.69  E-value=0.044  Score=59.30  Aligned_cols=34  Identities=12%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      .+|+|||||.|||.||..+++.  |.+|+|||+.+.
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            4799999999999999999987  999999999763

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=94.65  E-value=0.015  Score=55.74  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCC------CeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKI------YDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g------~~Vtvie~~~  142 (441)
                      .+.++|+|||||..|+.+|.+|.+.+      +.||+||...
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~   49 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE   49 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence            44689999999999999999998765      8999999864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.61  E-value=0.044  Score=54.33  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|+|||+|..|...|..++..|++|+++|+.+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998763

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=94.58  E-value=0.046  Score=58.34  Aligned_cols=34  Identities=9%  Similarity=0.182  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++||||+|.+|..+|.+|+..|++|.|+|+..
T Consensus         7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            5689999999999999999999999999999985

>PLN02852 ferredoxin-NADP+ reductase

Probab=94.51  E-value=0.16  Score=53.45  Aligned_cols=49  Identities=4%  Similarity=0.003  Sum_probs=42.3

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |+|.+|+.++| +.|+|||+|||..     |.   ..+...++.+|+.+|.+|.+++.
T Consensus       374 G~V~~d~~~~T-~ipGvyAaGDi~~-----Gp---~gvI~t~~~dA~~ta~~i~~d~~  422 (491)
T PLN02852        374 GRVLSSASGAD-TEPGLYVVGWLKR-----GP---TGIIGTNLTCAEETVASIAEDLE  422 (491)
T ss_pred             ceEEeCCCCcc-CCCCEEEeeeEec-----CC---CCeeeecHhhHHHHHHHHHHHHH
Confidence            88999988888 9999999999992     31   23778899999999999999986

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.31  E-value=0.044  Score=56.47  Aligned_cols=35  Identities=11%  Similarity=0.208  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|.|||.|+.|+.+|..|++.|++|+++|.++.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.31  E-value=0.056  Score=48.36  Aligned_cols=34  Identities=21%  Similarity=0.078  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|.+|..|+..|...|++|+++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            5699999999999999999999999999998764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=94.24  E-value=0.029  Score=58.01  Aligned_cols=30  Identities=10%  Similarity=0.040  Sum_probs=28.4

Q ss_pred             EECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          114 VLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       114 IIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      |||+|.+|+.||..+++.|.+|+|+|+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            799999999999999999999999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.22  E-value=0.054  Score=52.88  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .++|.|||+|..|...|..++..|++|+++|+++..
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            458999999999999999999999999999998743

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.21  E-value=0.053  Score=52.98  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998763

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.02  E-value=0.075  Score=45.71  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~  142 (441)
                      .++++|||+|-+|-.++..|...|.+ |+|+.|+.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            67999999999999999999999987 99998764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08275 putative oxidoreductase; Provisional

Probab=93.93  E-value=0.078  Score=56.78  Aligned_cols=34  Identities=12%  Similarity=0.141  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      .+|+|||||.||+.||..+++.  |.+|+|+|+.+.
T Consensus        10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275         10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            4899999999999999999875  689999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.90  E-value=0.076  Score=52.49  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||+|-.|...|..|++.|++|+++.+++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            4589999999999999999999999999998764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.90  E-value=0.068  Score=52.15  Aligned_cols=35  Identities=14%  Similarity=0.088  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            35899999999999999999999999999998763

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.71  E-value=0.064  Score=52.92  Aligned_cols=34  Identities=9%  Similarity=0.008  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            4799999999999999999999999999998863

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.70  E-value=0.068  Score=51.94  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|.|||+|..|...|..|++.|++|+++|.++.
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            45899999999999999999999999999998763

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.60  E-value=0.066  Score=52.25  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            4799999999999999999999999999998864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.51  E-value=0.11  Score=48.74  Aligned_cols=34  Identities=24%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ++++|+|||||..+..=+..|.+.|.+||||.+.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            3679999999999999999999999999999665

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.40  E-value=0.092  Score=51.38  Aligned_cols=35  Identities=14%  Similarity=0.061  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|.|||+|..|...|..|...|++|+++|+++.
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            46899999999999999999999999999998763

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.39  E-value=0.089  Score=51.42  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      -++|.|||+|..|...|..|+..|++|+++|+++.
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            36899999999999999999999999999998764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.23  E-value=0.11  Score=45.15  Aligned_cols=31  Identities=13%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|+|..|...|..|.+.|++|+++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=93.20  E-value=0.11  Score=59.02  Aligned_cols=33  Identities=12%  Similarity=0.073  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||.|||.||..+++.|.+|+|+|+..
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~   46 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH   46 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            479999999999999999999999999999976

>PRK04148 hypothetical protein; Provisional

Probab=93.13  E-value=0.071  Score=45.71  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++++++||.| .|.++|..|++.|++|+.+|-++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999 888889999999999999998875

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.11  E-value=0.11  Score=53.16  Aligned_cols=35  Identities=11%  Similarity=-0.025  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|.|+.|+.+|..++..|.+|+++|.++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            37899999999999999999999999999998765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02785 Protein HOTHEAD

Probab=93.11  E-value=0.1  Score=56.14  Aligned_cols=34  Identities=12%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+++|||||.||+.+|.+|++ +++|.|+|+.+.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            5789999999999999999998 589999999864

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=92.98  E-value=0.16  Score=54.62  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      .+|+|||||.|||.||..+++.  |.+|+|+|+..
T Consensus         5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~   39 (582)
T PRK09231          5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY   39 (582)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence            4799999999999999999875  57999999975

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.95  E-value=0.12  Score=50.90  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.|||+|..|...|..|.+.|++|+++++++
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999865

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=92.88  E-value=0.11  Score=51.71  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .||+|||+|..|...|..|.+.|++|+++++.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            479999999999999999999999999998753

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.76  E-value=0.12  Score=52.36  Aligned_cols=34  Identities=12%  Similarity=-0.015  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|||+|.+|+.+|..+...|.+|++++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5689999999999999999999999999998764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.76  E-value=0.1  Score=50.73  Aligned_cols=34  Identities=24%  Similarity=0.061  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +-+|+|||||.+|..+|+.+...|.+||++|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            4589999999999999999999999999999874

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.74  E-value=0.12  Score=54.50  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6799999999999999999999999999998876

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=92.73  E-value=0.17  Score=48.22  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.+++|+|+|+.+..+|..+...|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            45899999999999999999999999999998875

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.59  E-value=0.1  Score=44.98  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++|+|+|+.+.++++.++..|++|+|+|+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            68999999999999999999999999999875

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.55  E-value=0.13  Score=50.16  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|||+|..|...|..|.+.|++|+++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999998854

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=92.53  E-value=0.77  Score=47.16  Aligned_cols=131  Identities=15%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             CCEEEEEE-EEEEEeCCCCEEEE-EecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCC--CCCCcccccccccC--HhHH
Q 013561          178 PNSYFYLA-SCIGIDTDKHEVYC-ETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTF--GIKGVKENAYFLRE--VNHA  250 (441)
Q Consensus       178 ~~v~~~~~-~v~~id~~~~~v~~-~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~--~ipG~~~~~~~l~~--~~~a  250 (441)
                      .++.++.+ +|.+++.+.+.+.. ....       +.+.++.+|.+|||+|+. ..-.  ...++.|-++.+.-  ..+-
T Consensus       276 ~Gg~il~g~~V~~i~~~~~~v~~V~t~~-------g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r  348 (419)
T TIGR03378       276 LGGVMLPGDRVLRAEFEGNRVTRIHTRN-------HRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDR  348 (419)
T ss_pred             CCCEEEECcEEEEEEeeCCeEEEEEecC-------CccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcch
Confidence            46566666 89998877776553 2111       112378999999999987 4322  23333344443321  1111


Q ss_pred             HHH-HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCccc----CCCCCEEEecccccccccCCCCCC
Q 013561          251 QEI-RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRA----PSVEDVFALGDCAGFLEQTGKPVL  325 (441)
Q Consensus       251 ~~~-~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt----~~~~~VfA~GD~a~~~~~~G~~~~  325 (441)
                      ..- ...+                         +..-+-..=.|.||+.||.    +-++|+||+|-+-.-.|+--+   
T Consensus       349 ~~W~~~~f-------------------------f~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~---  400 (419)
T TIGR03378       349 DQWYQHRF-------------------------FAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE---  400 (419)
T ss_pred             hhhcchhh-------------------------cCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---
Confidence            000 0000                         0000000023789999884    128999999988754442100   


Q ss_pred             CchHHHHHHHHHHHHHHH
Q 013561          326 PALAQVAERQGKYLAELF  343 (441)
Q Consensus       326 p~~a~~A~~qg~~aA~nI  343 (441)
                      -.-.-+|+..|-.||++|
T Consensus       401 gcG~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       401 GCGSGVAVSTALHAAEQI  418 (419)
T ss_pred             CCCchhHHHHHHHHHHhh
Confidence            011227788888888876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=92.49  E-value=0.12  Score=50.79  Aligned_cols=34  Identities=9%  Similarity=0.056  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ...|+|||+|.-|+++|.+|++.|.++.++|+.+
T Consensus         7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~   40 (399)
T KOG2820|consen    7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP   40 (399)
T ss_pred             ceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence            4579999999999999999999999999999865

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.46  E-value=0.2  Score=44.90  Aligned_cols=33  Identities=12%  Similarity=0.049  Sum_probs=30.0

Q ss_pred             CCcEEEECCCH-HHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGW-GACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~-aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +++|+|||+|- +|..+|..|.+.|.+|+++++.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            68999999995 7999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.42  E-value=0.22  Score=45.97  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|.|-.|..+|+.|.+.|++|+++|.+.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            36799999999999999999999999999987653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=92.38  E-value=0.18  Score=49.53  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ...|+|||+|.|||-+|.+|+..|.+|.++|.+..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            45799999999999999999999999999998753

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.22  E-value=0.16  Score=50.00  Aligned_cols=33  Identities=12%  Similarity=-0.025  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .||+|||+|..|...|..|.+.|++|+++.+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999998864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.20  E-value=0.18  Score=51.48  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|.|+.|..+|..+...|.+|+++|.++
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            47899999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.08  E-value=0.22  Score=50.47  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+++|+|.|| |+.|..++..|.+.|++|+.+++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            34789999998 9999999999999999999998754

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.97  E-value=0.16  Score=49.67  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISP  140 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~  140 (441)
                      ||+|||+|..|...|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999987

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.90  E-value=0.19  Score=49.29  Aligned_cols=35  Identities=14%  Similarity=0.187  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||.|.+|..++..|.+.|.+|+++++++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999999999999999999999999998874

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.89  E-value=0.18  Score=43.12  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .+||+|+|+|-.|.++|..|++.|. +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            3589999999999999999999987 799999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.87  E-value=0.22  Score=49.06  Aligned_cols=34  Identities=15%  Similarity=0.082  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||+|-.|...|..|.+.|++|++++++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4589999999999999999999999999999875

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=91.80  E-value=0.18  Score=44.69  Aligned_cols=34  Identities=18%  Similarity=0.085  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+++|+|=|..|-.+|+.|+..|.+|+|.|.++
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            7899999999999999999999999999999876

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=91.77  E-value=0.15  Score=52.38  Aligned_cols=33  Identities=9%  Similarity=0.156  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|.|||.|+.|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998763

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.77  E-value=0.2  Score=49.00  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||.|.+|..+|..|...|.+|++++++.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36899999999999999999999999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07804 L-aspartate oxidase; Provisional

Probab=91.77  E-value=0.25  Score=52.77  Aligned_cols=55  Identities=18%  Similarity=0.129  Sum_probs=36.6

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVL-PALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~-p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||+++|| ++|++||+|||+.. ...|.... -.....+.-.|+.+++++.+..
T Consensus       358 GGi~vd~~~~t-~i~GLyAaGe~~~~-g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~  413 (541)
T PRK07804        358 GGVVTDVYGRT-SVPGLYAAGEVACT-GVHGANRLASNSLLEGLVVGERAGAAAAAHA  413 (541)
T ss_pred             CCEEECCCCcc-cCCCeEEccccccc-ccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999 99999999999631 01122111 1123445667777777776554

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.70  E-value=0.2  Score=52.25  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|+|.|..|+++|..|.+.|++|++.|.++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            5689999999999999999999999999999875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.68  E-value=0.24  Score=49.29  Aligned_cols=33  Identities=24%  Similarity=0.099  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|.|||+|..|...|..|.+.|++|++++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999998864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.66  E-value=1.2  Score=45.05  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCcc-----------cccchhhhhcCC-------------CCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHMV-----------FTPLLASTCVGT-------------LEF  160 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~~-----------~~~ll~~~~~g~-------------~~~  160 (441)
                      +..|.|||||=.+.++-..|..    ..+++.-|.|+..+.           |.|......++.             +.+
T Consensus       187 ~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Y  266 (436)
T COG3486         187 KRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLY  266 (436)
T ss_pred             CceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccc
Confidence            3459999999999988877753    345677788876431           112111111111             111


Q ss_pred             ccccc-chhhhhhhh------cCCCCEEEEEE-EEEEEeCCCCE-EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          161 RSVAE-PVSRIQTSL------SSDPNSYFYLA-SCIGIDTDKHE-VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       161 ~~~~~-~~~~~~~~~------~~~~~v~~~~~-~v~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      +.+.. .++++...+      ...+.+....+ ++..+..+.+. +.+....    ...++.+++++|.||+|||-+...
T Consensus       267 kgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~----~~~~~~~t~~~D~vIlATGY~~~~  342 (436)
T COG3486         267 KGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH----HETGELETVETDAVILATGYRRAV  342 (436)
T ss_pred             cccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee----ccCCCceEEEeeEEEEecccccCC
Confidence            11111 112221111      11234444443 67777776643 4443321    112455688999999999987554


Q ss_pred             C
Q 013561          232 F  232 (441)
Q Consensus       232 ~  232 (441)
                      |
T Consensus       343 P  343 (436)
T COG3486         343 P  343 (436)
T ss_pred             c
Confidence            4

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=91.65  E-value=0.19  Score=49.62  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|.|||+|..|...|..|.+.|++|+++++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            379999999999999999999999999998865

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=91.64  E-value=0.24  Score=45.72  Aligned_cols=33  Identities=9%  Similarity=0.057  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~  141 (441)
                      .++|+|||+|-.|...|..|++.|+ +++++|.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            5689999999999999999999998 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08071 L-aspartate oxidase; Provisional

Probab=91.29  E-value=0.33  Score=51.45  Aligned_cols=34  Identities=21%  Similarity=0.445  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|.||+.||..+++ |.+|+|+|+.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~   36 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK   36 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence            3489999999999999999976 899999999764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.24  E-value=0.35  Score=51.66  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||+|.||+.||..+ +.|.+|+|+|+.+
T Consensus         8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~   39 (543)
T PRK06263          8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL   39 (543)
T ss_pred             cCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence            4899999999999999999 8899999999975

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.21  E-value=0.27  Score=50.59  Aligned_cols=35  Identities=14%  Similarity=-0.041  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            47899999999999999999999999999998765

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=91.18  E-value=0.18  Score=49.65  Aligned_cols=36  Identities=14%  Similarity=0.164  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~  144 (441)
                      .-.|+|||||-.|.+.|..|.+    .|.+|+|+|+++.+
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            4579999999999999988853    57999999998854

>PRK09077 L-aspartate oxidase; Provisional

Probab=91.17  E-value=0.35  Score=51.54  Aligned_cols=33  Identities=12%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||+|.||+.||..+++. .+|+|+|+...
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~   41 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL   41 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence            4799999999999999999876 89999999753

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.15  E-value=0.27  Score=50.99  Aligned_cols=34  Identities=15%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|+|.+|+++|+.|++.|++|++.|.+.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            5789999999999999999999999999998754

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=91.13  E-value=0.32  Score=45.19  Aligned_cols=35  Identities=29%  Similarity=0.256  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|+|||||-.|..=|+.|.+.|.+|+|+.++-
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~   45 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF   45 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            37799999999999999999999999999997654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.10  E-value=0.25  Score=40.81  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             EEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          112 VVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       112 VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|.|..|...+..|.+.+.+|+++|.++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7899999999999999999777999999876

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=91.08  E-value=0.28  Score=53.05  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHhhc----cCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGID----TKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~----~~g~~Vtvie~~~  142 (441)
                      +|+|||||.|||.||..++    +.|.+|+|+|+..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~   36 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN   36 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence            4899999999999999998    6799999999965

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=90.97  E-value=0.39  Score=51.73  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      .+|+|||||.|||.||..+++.  |.+|+|+|+...
T Consensus         4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~   39 (580)
T TIGR01176         4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP   39 (580)
T ss_pred             eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            3799999999999999999875  579999999753

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.86  E-value=0.28  Score=49.70  Aligned_cols=34  Identities=9%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      +++|+|||+|-.|..+|..|++.+ .+|++.+|+.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            358999999999999999999987 9999999984

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.82  E-value=0.34  Score=44.16  Aligned_cols=33  Identities=21%  Similarity=0.071  Sum_probs=30.0

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      .++++|+|| |..|..++..|.+.|++|+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            568999997 999999999999999999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=90.81  E-value=0.28  Score=43.47  Aligned_cols=34  Identities=9%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.+||-|-.|...|..|.+.|++|+++++++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            3589999999999999999999999999998764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=90.79  E-value=0.2  Score=48.41  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=27.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-------CCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-------KIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-------~g~~Vtvie~~~  142 (441)
                      +.+|+|||+|.+|++.|..+.+       .-.+|+|++.+.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            5689999999999999966654       236899997764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.77  E-value=0.3  Score=48.87  Aligned_cols=34  Identities=9%  Similarity=0.045  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4689999999999999999999998 899999864

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.77  E-value=0.31  Score=50.61  Aligned_cols=35  Identities=9%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|+|+|.|.+|+++|+.|++.|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            56899999999999999999999999999987653

>TIGR00551 nadB L-aspartate oxidase

Probab=90.70  E-value=0.44  Score=50.19  Aligned_cols=32  Identities=19%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||+|.|||.||..+++.|. |+|+|+.+
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~   34 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAP   34 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence            379999999999999999999987 99999985

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02494 adenosylhomocysteinase

Probab=90.62  E-value=0.33  Score=50.37  Aligned_cols=35  Identities=9%  Similarity=-0.052  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|.|+.|..+|..+...|.+|+++|.++
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999999999999999999999998875

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=90.50  E-value=0.2  Score=51.02  Aligned_cols=37  Identities=14%  Similarity=0.092  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+++|||+|.-||.+|..|++.|.+|.|+|+....+
T Consensus        14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~g   50 (561)
T KOG4254|consen   14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIG   50 (561)
T ss_pred             ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecC
Confidence            5689999999999999999999999999999985443

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.47  E-value=0.3  Score=51.45  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +++|+|+|.|..|++++..|...|++|++.|.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            578999999999999999999999999999965

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=90.40  E-value=0.32  Score=51.35  Aligned_cols=34  Identities=12%  Similarity=0.110  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998753

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.32  E-value=0.36  Score=47.07  Aligned_cols=34  Identities=21%  Similarity=0.116  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|||+|-+|.++|..|...|. +|+|+++..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            5799999999999999999999887 799998864

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.22  E-value=0.39  Score=44.28  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      ..+|+|||.|-.|.++|..|++.|. +++++|.+.
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            5689999999999999999999997 899999863

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.18  E-value=0.45  Score=42.91  Aligned_cols=37  Identities=8%  Similarity=-0.008  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      -.+++|.|||.|-+|.++|+.|...|.+|+.+++...
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            3478999999999999999999999999999998764

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=90.18  E-value=0.35  Score=47.73  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ||.|||+|..|.++|..|...|  .+|+++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            6999999999999999999888  5899999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.90  E-value=0.42  Score=47.13  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +||.|||+|..|...|..|+..|+ +|+++|..+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            379999999999999999998776 899999854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=89.85  E-value=0.4  Score=47.25  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      +||+|||+|.+|.++|..|...|  ++|+++|++.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            37999999999999999999888  6899999875

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=89.84  E-value=0.52  Score=50.56  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+|||||.||+.||..+++.|.+|+|+|+.+.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            499999999999999999999999999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.75  E-value=0.43  Score=49.62  Aligned_cols=35  Identities=17%  Similarity=-0.029  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||.|..|..+|..|...|.+|+++|+.+
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp  287 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP  287 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999999999999999999999998765

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.74  E-value=0.36  Score=50.78  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5699999999999999999999999999998876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=89.71  E-value=0.37  Score=50.43  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      +|+|||.|+.|+.+|..|+..  |++|+.+|.++.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            799999999999999999987  588999998764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=89.67  E-value=0.45  Score=45.92  Aligned_cols=34  Identities=12%  Similarity=0.076  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      ..+|+|||.|-.|.++|..|++.| -++||+|.+.
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            468999999999999999999999 5899999864

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=89.65  E-value=0.29  Score=49.36  Aligned_cols=27  Identities=7%  Similarity=0.027  Sum_probs=25.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          119 WGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       119 ~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .|||+||.+|++.|++|||+|++++++
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~G   27 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVG   27 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence            489999999999999999999998875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.62  E-value=0.47  Score=40.94  Aligned_cols=32  Identities=16%  Similarity=0.127  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +|+|||.|-.|.++|..|.+.|. +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            59999999999999999999997 799998864

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08401 L-aspartate oxidase; Provisional

Probab=89.60  E-value=0.55  Score=49.13  Aligned_cols=54  Identities=20%  Similarity=0.328  Sum_probs=38.8

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCC-chHHHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLP-ALAQVAERQGKYLAELFNKK  346 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p-~~a~~A~~qg~~aA~nI~~~  346 (441)
                      |.|.||.+.|| ++|++||+|+|+.. ...|..... .....|+-.|+.+++++.+.
T Consensus       311 GGi~vd~~~~t-~IpGLyAaGE~a~~-G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~  365 (466)
T PRK08401        311 GGISVDTFYRT-GIKNLYAIGEAASN-GFHGANRLASNSLLECIVSGLEVARTISRE  365 (466)
T ss_pred             CCEEECCCCcc-cCCCEEECcccccc-CCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999 99999999999731 012321111 23456778899999998743

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.58  E-value=0.38  Score=47.72  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|.|||+|..|...|..|++.|++|++++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            69999999999999999999999999999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.57  E-value=0.45  Score=46.81  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      +||+|||+|..|...|..++..|+ +|+++|.++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            589999999999999999988765 9999998653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.56  E-value=0.39  Score=50.30  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|.|-.|.++|+.|.+.|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            5789999999999999999999999999999654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.54  E-value=0.32  Score=49.63  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|.|||.|+.|+..|..++. ||+|+++|.++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            69999999999999988875 899999999864

>PRK08017 oxidoreductase; Provisional

Probab=89.53  E-value=0.43  Score=45.00  Aligned_cols=34  Identities=9%  Similarity=0.101  Sum_probs=30.3

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|.|+ |..|.++|+.|.+.|++|+++.++.
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999998 9999999999999999999997764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=89.53  E-value=0.68  Score=48.15  Aligned_cols=40  Identities=15%  Similarity=0.094  Sum_probs=35.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .-.+|||+|||+|.+|...|-.|.+.|.+||++=+++.+.
T Consensus       172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         172 DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            3458999999999999999999999999999998887554

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=89.48  E-value=0.45  Score=47.63  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=31.0

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |+.|-.++.+|.+.|++|+.+++..
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578999997 9999999999999999999998754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=89.46  E-value=0.57  Score=46.51  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      .+||+|||+|..|..+|..++..|+ +|+|+|.++.
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            4689999999999999999988885 8999998764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.45  E-value=0.67  Score=49.79  Aligned_cols=33  Identities=21%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||.||+.||..+++.|.+|+|+|+.+
T Consensus         6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~   38 (566)
T PRK06452          6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF   38 (566)
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            489999999999999999999999999999974

>PRK07512 L-aspartate oxidase; Provisional

Probab=89.43  E-value=0.54  Score=49.86  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|.||+.||..++  +.+|+|+|+.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            358999999999999999997  469999999864

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=89.40  E-value=0.28  Score=47.90  Aligned_cols=37  Identities=11%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~  145 (441)
                      ..++||||||..|++.|++|.-  .+.+|.|+|++..+.
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            6689999999999999999864  488999999987553

>PRK06849 hypothetical protein; Provisional

Probab=89.38  E-value=0.47  Score=48.34  Aligned_cols=36  Identities=11%  Similarity=0.056  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCH-HHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGW-GACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~-aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++++|+|+|++. .|+..|+.|.+.|++|++++..+.
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~   39 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKY   39 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            478999999986 799999999999999999988763

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.31  E-value=0.42  Score=49.58  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+++++|+|+|..|..+|..|.+.|++|++||+++.
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            367899999999999999999999999999998763

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=89.20  E-value=0.46  Score=50.29  Aligned_cols=36  Identities=14%  Similarity=0.067  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      -++|.|||+|.-|...|..|++.|++|+++|+++..
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~   42 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA   42 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            468999999999999999999999999999988743

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=89.18  E-value=0.48  Score=47.40  Aligned_cols=34  Identities=9%  Similarity=0.052  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      ..+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4689999999999999999999998 899999863

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=89.12  E-value=0.78  Score=35.93  Aligned_cols=32  Identities=25%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISP  140 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~  140 (441)
                      .++++|+|.|-.|..++..|... +.+|+++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            67899999999999999999887 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=88.98  E-value=0.6  Score=40.56  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      .++|+|||+|..|...+..|.+.| ++|++++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            578999999999999999999885 7899998764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=88.94  E-value=0.56  Score=43.90  Aligned_cols=36  Identities=8%  Similarity=-0.056  Sum_probs=31.3

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++|+|.|| |..|..++..|.+.|++|+++.++.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~   40 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG   40 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34678999994 8999999999999999999998764

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=88.94  E-value=0.67  Score=45.88  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ++||+|||+|..|.++|..|...+.  ++.|+|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            5699999999999999999988776  899999865

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=88.93  E-value=0.72  Score=50.44  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||.|||.||..+++.|.+|+|+|+.+.
T Consensus         6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~   39 (657)
T PRK08626          6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA   39 (657)
T ss_pred             ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4799999999999999999999999999998653

>PRK06057 short chain dehydrogenase; Provisional

Probab=88.93  E-value=0.53  Score=44.56  Aligned_cols=35  Identities=9%  Similarity=-0.105  Sum_probs=31.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|+|+|| |..|.+++++|.+.|++|++++++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3679999998 8999999999999999999997754

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.92  E-value=0.4  Score=50.65  Aligned_cols=36  Identities=14%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      -++|.|||+|.-|...|..+++.|++|+++|+++..
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            457999999999999999999999999999998643

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=88.92  E-value=0.5  Score=44.08  Aligned_cols=32  Identities=19%  Similarity=0.093  Sum_probs=29.2

Q ss_pred             cEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.||| +|..|.++|..|.+.|++|+++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 79999999999999999999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=88.80  E-value=0.46  Score=49.60  Aligned_cols=35  Identities=11%  Similarity=0.057  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHH-HHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACR-FLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~-aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++|.|||.|-+|++ +|+.|.+.|++|++.|.++
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            3578999999999999 6999999999999999765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=88.79  E-value=0.41  Score=49.61  Aligned_cols=32  Identities=13%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            79999999999999999999999999999865

>PRK05993 short chain dehydrogenase; Provisional

Probab=88.77  E-value=0.61  Score=44.86  Aligned_cols=34  Identities=6%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |..|.++|+.|.+.|++|+++.++.
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~   38 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKE   38 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            568999998 8999999999999999999998764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.69  E-value=0.6  Score=48.72  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      .++|+|+|.|-.|.++|+.|.+ |++|+++|.+
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            6789999999999999999995 9999999954

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=88.67  E-value=0.42  Score=49.44  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|+|-|-.|+++|+.|.+.|++|+++|.++.
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~   41 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA   41 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence            67999999999999999999999999999997763

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=88.53  E-value=0.64  Score=43.22  Aligned_cols=34  Identities=9%  Similarity=-0.042  Sum_probs=30.6

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|+ |..|..+++.|.+.|++|+++.+++
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~   39 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNE   39 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            568999996 8999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	441
4g6g_A	502	Crystal Structure Of Ndh With Trt Length = 502		3e-28
4g6g_A	502	Crystal Structure Of Ndh With Trt Length = 502		2e-12
4g9k_A	471	Structure Of The Ndi1 Protein From Saccharomyces Ce		3e-28
4g9k_A	471	Structure Of The Ndi1 Protein From Saccharomyces Ce		2e-12
3hyw_A	430	3-D X-Ray Structure Of The Sulfide:quinone Oxidored		7e-06
3hyv_A	430	3-D X-Ray Structure Of The Sulfide:quinone Oxidored		7e-06

>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt Length = 502

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           +KP V++LG+GWGA  FLK IDTK Y+   ISPR++ +FTPLL S  VGT++ +S+ EP+
Sbjct: 41  DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 100
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQ---FKVAY 218
             +  +L    N  +Y A    I+ D++ V  ++++     ++P      HQ    ++ Y
Sbjct: 101 --VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 158
Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
           D L+ A GAEP TFGI GV +  +FL+E+ ++ EIR+    NL
Sbjct: 159 DYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANL 201

>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt Length = 502

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDG 352
           + V+++L+     ++FA+GD A          LP  AQVA ++ +YLA+ F+K     + 
Sbjct: 353 LAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNF 405
Query: 353 GKALSAK--------DINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSW 404
            K LS++        + N   PF Y  LG++A +G  +A+  +R  K     +  G +++
Sbjct: 406 QKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGK-RTFYTGGGLMTF 464
Query: 405 LIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRD 437
            +WR  YL+ +LS R+R  V  +W     F RD
Sbjct: 465 YLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 497

>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces Cerevisiae Length = 471

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 11/163 (6%)
Query: 108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
           +KP V++LG+GWGA  FLK IDTK Y+   ISPR++ +FTPLL S  VGT++ +S+ EP+
Sbjct: 10  DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPI 69
Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEP------HQ---FKVAY 218
             +  +L    N  +Y A    I+ D++ V  ++++     ++P      HQ    ++ Y
Sbjct: 70  --VNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKY 127
Query: 219 DKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL 261
           D L+ A GAEP TFGI GV +  +FL+E+ ++ EIR+    NL
Sbjct: 128 DYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANL 170

>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces Cerevisiae Length = 471

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDG 352
           + V+++L+     ++FA+GD A          LP  AQVA ++ +YLA+ F+K     + 
Sbjct: 322 LAVNDFLQVKGSNNIFAIGDNAF-------AGLPPTAQVAHQEAEYLAKNFDKMAQIPNF 374
Query: 353 GKALSAK--------DINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSW 404
            K LS++        + N   PF Y  LG++A +G  +A+  +R  K     +  G +++
Sbjct: 375 QKNLSSRKDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGK-RTFYTGGGLMTF 433
Query: 405 LIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRD 437
            +WR  YL+ +LS R+R  V  +W     F RD
Sbjct: 434 YLWRILYLSMILSARSRLKVFFDWIKLAFFKRD 466

>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase Of The Hyperthermophilic Bacterium Aquifex Aeolicus In Complex With Decylubiquinone Length = 430

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 138 ISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEV 197
           IS R +  FTP      +G  +F  ++ P++ +        N  F       ID D + V
Sbjct: 33  ISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKF----NIEFINEKAESIDPDANTV 88
Query: 198 YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
              T  +GK        K+ YD LVIA G + L FG +G +EN+  +    HA E +KKL
Sbjct: 89  ---TTQSGK--------KIEYDYLVIATGPK-LVFGAEGQEENSTSICTAEHALETQKKL 136
Query: 258 LLNLMLSENPGDTV 271
                L  NPG  V
Sbjct: 137 ---QELYANPGPVV 147

>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase From The Hyperthermophilic Bacterium Aquifex Aeolicus Length = 430

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 138 ISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEV 197
           IS R +  FTP      +G  +F  ++ P++ +        N  F       ID D + V
Sbjct: 33  ISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKF----NIEFINEKAESIDPDANTV 88
Query: 198 YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
              T  +GK        K+ YD LVIA G + L FG +G +EN+  +    HA E +KKL
Sbjct: 89  ---TTQSGK--------KIEYDYLVIATGPK-LVFGAEGQEENSTSICTAEHALETQKKL 136
Query: 258 LLNLMLSENPGDTV 271
                L  NPG  V
Sbjct: 137 ---QELYANPGPVV 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	1e-15
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	7e-15
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	8e-13
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	3e-14
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-07
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-11
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	8e-06
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	4e-11
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	6e-06
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	6e-11
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	6e-06
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	7e-11
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	1e-06
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	8e-11
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	5e-06
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	8e-11
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	5e-06
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	3e-10
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	6e-06
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	2e-09
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	7e-09
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	5e-06
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	2e-08
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	6e-06
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	3e-05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	4e-05
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	7e-05
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	1e-04
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	2e-04
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	3e-04
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-04
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	5e-04
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	6e-04
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	6e-04
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	6e-04
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	6e-04
4dna_A	463	Probable glutathione reductase; structural genomic	7e-04
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	8e-04

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 110 PRVVVLGTGWG---ACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEP 166
            +V+VLG  +G   A   LK +     D   I+      F P L    +G  +   +   
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61

Query: 167 VSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG 226
           +S        +    F   +   ID     VY           +    +  YD +++  G
Sbjct: 62  LS----EALPEKGIQFQEGTVEKIDAKSSMVYYTK-------PDGSMAEEEYDYVIVGIG 110

Query: 227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
           A   T  +KG  +  Y + E   A ++R+KL
Sbjct: 111 AHLATELVKGWDKYGYSVCEPEFATKLREKL 141

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 21/116 (18%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQDG 352
           I  D  + +   ++V+A+GD           V P L  +A   G+  A+  +  +  + G
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSM------TV-PKLGYLAVMTGRIAAQ--H--LANRLG 336

Query: 353 GKALSAKDINLGDPFVYKHLGS-MATVGRYKALVDLRQSKDEKGISLAGFLSWLIW 407
                 K         Y      +A        V ++      G       + +  
Sbjct: 337 VPTKVDK---------YYPTIVCVADNPYEGYAVSVKDDTWYGGTVSIADPAAVNH 383

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 75.2 bits (185), Expect = 7e-15
 Identities = 44/259 (16%), Positives = 74/259 (28%), Gaps = 35/259 (13%)

Query: 109 KPRVVVLGTGWG----ACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVA 164
              VV+LG G G    A    + + +   +   IS  ++  F P      VG  E   +A
Sbjct: 4   SAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDYFQFVPSNPWVGVGWKERDDIA 62

Query: 165 EPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIA 224
            P+             +F   S   ID +   +      +G          V YD L+IA
Sbjct: 63  FPIR----HYVERKGIHFIAQSAEQIDAEAQNITLA---DGN--------TVHYDYLMIA 107

Query: 225 AGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS---KYFVIT 281
            G +     + G   +   ++ +       +       L   PG  V         F   
Sbjct: 108 TGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPA 167

Query: 282 ITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
              + +       V   L+   + D              G   +  +        K L E
Sbjct: 168 YEYAMI-------VASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKE 220

Query: 342 L-----FNKKIGEQDGGKA 355
                  N K+ + +  K 
Sbjct: 221 EGIEAYTNCKVTKVEDNKM 239

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 20/145 (13%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPV---LPALAQVAERQGKYLAELFNKKIGE 349
           + VDE  R+    ++FA G           PV    P    + E             +  
Sbjct: 286 VLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL-- 343

Query: 350 QDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRS 409
              G+                +  + A +G   A      +  +         ++  W  
Sbjct: 344 --EGRKGEQ-------TMGTWNAVAFADMGDRGAAF---IALPQLKPRKVDVFAYGRW-- 389

Query: 410 AYLTRVLSWRNRFYVAVNWATTFVF 434
            +L +V  +   F   +    +  F
Sbjct: 390 VHLAKVA-FEKYFIRKMKMGVSEPF 413

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
             ID   H V  E +  G+      +  + YDKLV+A G++     ++G+       +  
Sbjct: 90  HAIDRAAHTVEIENLRTGE------RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTN 143

Query: 247 VNHAQEIRKKL 257
           ++ A+ ++  +
Sbjct: 144 LDEAEFVQHAI 154

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 47.1 bits (113), Expect = 8e-06
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ----TGKPVLPALAQVAERQGKYLAE 341
           I VD  +R  S  D+FA GDC          TGKP    L  +A RQG+ +  
Sbjct: 276 IIVDTRMRT-SDPDIFAGGDCV---TIPNLVTGKPGFFPLGSMANRQGRVIGT 324

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
             I   +H+V  + + +G+      +    YDKL+I+ GA P    I G   +N Y +R 
Sbjct: 80  TAIQPKEHQVTVKDLVSGE------ERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRG 133

Query: 247 VNHAQEIRKKL 257
              A ++++K 
Sbjct: 134 RQWAIKLKQKT 144

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I  DE++R  S  DVFA+GD            V  ALA  A +QG++  +
Sbjct: 263 IKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVK 311

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
             +DT+K  VY E             F+ +YD+L+IA G  P+    +G   +  + L+ 
Sbjct: 117 TKVDTEKKIVYAEHTKTKD------VFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKT 170

Query: 247 VNHAQEIRKKL 257
           +  A+ I K L
Sbjct: 171 IPDAERILKTL 181

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I V+ +++  +V+DV+A GDCA              +   A +QG+    
Sbjct: 300 IEVNAYMQT-NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGL 348

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK--ENAYFLR 245
           + I+ ++  +  + V   +       +  AYD L+++ GA+P+   I G++  +  + LR
Sbjct: 117 VKINKEEKTITIKNVTTNE------TYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLR 170

Query: 246 EVNHAQEIRKKL 257
            V     I+  +
Sbjct: 171 NVPDTDRIKAYI 182

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I V+E  +  S   ++A+GD     +  T    +  LA  A RQG+ LA+
Sbjct: 300 IKVNEKFQT-SDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLAD 348

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 63.0 bits (154), Expect = 8e-11
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
           + ID     V    + +G       +++ +YD L+++ GA P+   I GV     + LR 
Sbjct: 82  VAIDRAAKLVTVRRLLDGS------EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRN 135

Query: 247 VNHAQEIRKKL 257
           +     I + +
Sbjct: 136 IPDMDRILQTI 146

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I V+  ++  S   ++A+GD     +  TG+  L  LA  A RQG+  A+
Sbjct: 285 IKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAAD 333

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 62.5 bits (153), Expect = 8e-11
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
             +D +   +  + +   +      +   AYDKL++  G++P    I G+     Y  + 
Sbjct: 82  TNVDPETKTIKVKDLITNE------EKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKN 135

Query: 247 VNHAQEIRKKL 257
            N A+++ ++ 
Sbjct: 136 YNDAKKLFEEA 146

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I  DE++ + S  D+FA GD A      T       LA  A RQG+ +  
Sbjct: 264 IITDEYMHS-SNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGL 312

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREV 247
           I I+ ++  V        +      QF+ +YDKL+++ GA   + G +   +  + LR +
Sbjct: 82  IAINDERQTVSVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNL 133

Query: 248 NHAQEIRKKL 257
                I + +
Sbjct: 134 EDTDAIDQFI 143

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I V++     +V +++A+GD A    +    P    LA  A R    +AE
Sbjct: 259 IPVNDKFET-NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAE 307

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
           + +D +   +        +          +YDKL++A GA   +  I+G   E     + 
Sbjct: 82  VAMDVENQLIAWTRKEEQQ--------WYSYDKLILATGASQFSTQIRGSQTEKLLKYKF 133

Query: 247 VNHAQEIRKKL 257
           ++ A      L
Sbjct: 134 LSGALAAVPLL 144

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I VD +L+  SV +VFA+GDC   + +   +     L   A R G  +A 
Sbjct: 261 IAVDAYLQT-SVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVAN 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 60/435 (13%), Positives = 124/435 (28%), Gaps = 112/435 (25%)

Query: 25  KDIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAER 84
               ++     K F  +L+N +   ++      + M   +      I      +  ++  
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETV------LEM---LQKLLYQIDPNWTSRSDHSSN 222

Query: 85  IVEESESEYQELSYPGLEATKPGEKPRV-VVLGTGWGACRFLKGIDTKIYDAV---C--- 137
           I     S   EL    L  +KP       +VL             + K ++A    C   
Sbjct: 223 IKLRIHSIQAELRR--LLKSKP--YENCLLVLLNVQ---------NAKAWNAFNLSCKIL 269

Query: 138 ISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEV 197
           ++ R   V   L A+T        +    +     +L+ D      L   +         
Sbjct: 270 LTTRFKQVTDFLSAAT--------TTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQD--- 317

Query: 198 YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG--VKENAY---FLREVNHAQ- 251
                        P +               P    I    +++        + VN  + 
Sbjct: 318 ------------LPRE----------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 252 -EIRKKLLLNLMLSENPGDTVQLFSKYFV----ITITLSFLVRLSQIGVDEWLRAPSVED 306
             I +  L  L     P +  ++F +  V      I    L  +       W      + 
Sbjct: 356 TTIIESSLNVL----EPAEYRKMFDRLSVFPPSAHIPTILLSLI-------WFDVIKSDV 404

Query: 307 VFALGDCA--GFLEQTGKP---VLPALAQVAERQGKYLAELFNKKIGEQ-DGGKALSAKD 360
           +  +        +E+  K     +P++    + + +    L ++ I +  +  K   + D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDD 463

Query: 361 I--NLGDPFVYKHLGS-MATVGRY-------KALVDLR--QSKDEKGISLAGFLSWLIWR 408
           +     D + Y H+G  +  +             +D R  + K    I      +W    
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDS-TAW--NA 516

Query: 409 SAYLTRVLSWRNRFY 423
           S  +   L  + +FY
Sbjct: 517 SGSILNTLQ-QLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 43/223 (19%)

Query: 232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS--ENPGDTVQLFSKYFVITITLSFLVR 289
           F  + ++ N  FL      ++ +  ++  + +   +   +  Q+F+KY V         R
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SR 133

Query: 290 LSQI-GVDEWL-RAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK-- 345
           L     + + L      ++V   G   G     GK  +     V     K   ++  K  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGV-LGS----GKTWV--ALDVC-LSYKVQCKMDFKIF 185

Query: 346 --KIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLS 403
              +   +  + +      L        +    T  R     +++         L   L 
Sbjct: 186 WLNLKNCNSPETVLEMLQKL-----LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLK 239

Query: 404 WLIWRSAYLTRVLS--WRNRFYVAVNW-----ATTFVFGRDIS 439
              + +  L  VL      + + A N       TT    R   
Sbjct: 240 SKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTT----RFKQ 276

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 56.3 bits (137), Expect = 7e-09
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-KENAYFLRE 246
           I +DT    V      NG       +    +D LV A GA P    I+GV  +  +    
Sbjct: 83  IEVDTGYVRV----RENGG------EKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADL 132

Query: 247 VNHAQEIRKKL 257
              A  IR+ +
Sbjct: 133 PPDALAIREYM 143

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ----TGKPVLPALAQVAERQGKYLAE 341
           I  +E ++  SVE+V+A GD A   E     TG+ V   LA    + G     
Sbjct: 262 IWTNEKMQT-SVENVYAAGDVA---ETRHVITGRRVWVPLAPAGNKMGYVAGS 310

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 20/82 (24%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK--------- 238
             ID D   V    + +GK           YDKL+ A G++P+   IKG +         
Sbjct: 116 QSIDYDAKTVTA--LVDGK------NHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFE 167

Query: 239 ---ENAYFLREVNHAQEIRKKL 257
              EN  F++   ++ ++  KL
Sbjct: 168 ATLENLQFVKLYQNSADVIAKL 189

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
             V++     S+  V+A+GDCA   +  T      ALA  A R G   A 
Sbjct: 308 FLVNKRQET-SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAH 356

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%)

Query: 109 KPRVVVLGTGWG---ACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAE 165
             +VVV+G G G   A +++K  D  I +   I P        L  S  V   + +   E
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSI-EVTLIEPNTDYYTCYL--SNEVIGGDRK--LE 56

Query: 166 PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225
            +      L           S  GID DK  V       G         +  YD+ V+A 
Sbjct: 57  SIKHGYDGLR-AHGIQVVHDSATGIDPDKKLVKTA---GGA--------EFGYDRCVVAP 104

Query: 226 GAEPLTFGIKGVKENA 241
           G E +   I+G  E A
Sbjct: 105 GIELIYDKIEGYSEEA 120

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 34/150 (22%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAEPV 167
             +VV++G G G     K +    Y+   I       ++ P+L+    G +    +    
Sbjct: 8   GSKVVIVGNGPGGFELAKQLSQT-YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF--- 63

Query: 168 SRIQT-SLSSDPNSYFYLASCI-GIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA 225
               +            LA     ID  +  V       G+         V YD LV+A 
Sbjct: 64  --PYSLDWYRKRGIEIRLAEEAKLIDRGRKVV---ITEKGE---------VPYDTLVLAT 109

Query: 226 GAEPLTFGIKGVKENAYFLREVNHAQEIRK 255
           GA      IKG KE    LR +  A  I++
Sbjct: 110 GARAREPQIKG-KEYLLTLRTIFDADRIKE 138

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKKIGEQ 350
           +I V +  +  +V  ++A+GD         K     L  VA + G+ LA+ L+     + 
Sbjct: 335 KIPVTDEEQ-TNVPYIYAIGDIL-----EDKV---ELTPVAIQAGRLLAQRLYAGSTVKC 385

Query: 351 D 351
           D
Sbjct: 386 D 386

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 18/154 (11%)

Query: 106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT-PLLASTCVGTLEFRSVA 164
             +  ++++LG G       K    K  D   I+   ++ +  P L              
Sbjct: 6   HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI---- 61

Query: 165 EPVSRIQTSLSSDPNSYFYL-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI 223
           + +   +       N           ID +   V  +   +G+        K+ Y+KL+I
Sbjct: 62  DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLK---SGE--------KIKYEKLII 110

Query: 224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKL 257
           A+G+      +    +  + L   + A +I+ + 
Sbjct: 111 ASGSIANKIKVPH-ADEIFSLYSYDDALKIKDEC 143

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            + VDE+ R  +V +++A+GD       T +     L  VA  +G  L + +F  K
Sbjct: 311 GVQVDEFSRT-NVPNIYAIGDI------TDR---LMLTPVAINEGAALVDTVFGNK 356

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            I VD++    ++E ++A+GD       TG      L  VA   G+ L+E LFN K
Sbjct: 284 YIVVDKYQNT-NIEGIYAVGDN------TGA---VELTPVAVAAGRRLSERLFNNK 329

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 11/55 (20%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
           I VD + +  +V++++A+GD       T +     L  VA  +G    + +F  K
Sbjct: 308 IKVDAYSKT-NVDNIYAIGDV------TDR---VMLTPVAINEGAAFVDTVFANK 352

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            + VDE +   +V  ++A+GD       TG      L  VA        +  F   
Sbjct: 307 AVVVDEKMTT-NVSHIWAVGDV------TGH---IQLTPVAIHDAMCFVKNAFENT 352

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 11/55 (20%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
           I  DE+    +V ++++LGD        GK     L  VA   G+ L+  LF  +
Sbjct: 304 IIADEYQNT-NVPNIYSLGDV------VGK---VELTPVAIAAGRKLSNRLFGPE 348

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 12/70 (17%)

Query: 189 GIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREV 247
            +D   H V    + +G          + Y KL+ A G +P      G      + +R  
Sbjct: 90  SLDPAAHTV---KLGDGS--------AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTK 138

Query: 248 NHAQEIRKKL 257
             A  +  +L
Sbjct: 139 EDADRLMAEL 148

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 189 GIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREV 247
            ID +  ++    + +G          + Y  LV+A GA      +      +  +LR +
Sbjct: 81  SIDREGRKL---LLASGT--------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRTL 129

Query: 248 NHAQEIRKKL 257
           + ++ +R+++
Sbjct: 130 DESEVLRQRM 139

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 189 GIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREV 247
            +D     +   ++++G          ++ D +VIA G+   T  + G +      LR  
Sbjct: 82  ALDVQTRTI---SLDDGT--------TLSADAIVIATGSRARTMALPGSQLPGVVTLRTY 130

Query: 248 NHAQEIRKKL 257
              Q +R   
Sbjct: 131 GDVQVLRDSW 140

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 40.9 bits (97), Expect = 7e-04
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            I VD + R  S   ++ALGD       T +     L  VA  +     E  +   
Sbjct: 287 AIIVDAFSRT-STPGIYALGDV------TDR---VQLTPVAIHEAMCFIETEYKNN 332

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 16/75 (21%)

Query: 188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG-----VKENAY 242
           + +D   + V    +N+G         ++ Y+K +IA G  P +          VK    
Sbjct: 114 VQLDVRDNMV---KLNDGS--------QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTT 162

Query: 243 FLREVNHAQEIRKKL 257
             R++   + + K  
Sbjct: 163 LFRKIGDFRSLEKIS 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.97
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.97
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.97
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.96
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.95
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.94
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.93
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.93
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.93
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.93
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.92
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.92
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.92
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.91
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.91
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.91
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.91
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.9
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.9
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.9
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.89
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.89
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.89
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.89
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.89
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.87
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.87
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.85
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.84
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.83
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.83
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.83
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.83
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.82
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.82
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.82
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.82
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.82
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.82
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.82
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.81
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.81
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.81
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.81
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.81
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.81
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.8
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.8
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.8
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.8
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.8
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.8
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.8
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.79
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.79
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.79
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.79
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.79
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.78
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.78
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.78
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.78
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.77
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.77
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.77
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.72
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.7
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.7
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.69
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.68
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.67
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.67
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.67
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.67
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.67
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.65
4dna_A	463	Probable glutathione reductase; structural genomic	99.63
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.62
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.62
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.61
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.6
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.59
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.58
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.55
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.5
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.49
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.15
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.09
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.07
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.07
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.04
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.01
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.97
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.96
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.95
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.94
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.93
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.89
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.88
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.86
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.77
4dna_A	463	Probable glutathione reductase; structural genomic	98.77
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.76
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.73
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.58
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.52
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.52
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.51
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.51
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.51
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.5
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.48
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.47
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.46
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.46
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.43
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.43
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.42
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.42
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.41
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.41
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.41
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.41
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.4
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.4
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.39
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.38
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.38
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.38
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.38
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.36
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.35
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.35
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.35
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.34
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.33
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.33
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.33
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.33
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.33
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.33
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.32
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.32
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.32
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.32
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.32
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.32
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.31
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.31
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.31
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.31
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.3
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.3
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.3
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.29
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.28
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.28
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.28
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.28
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.28
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.27
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.26
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.26
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.25
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.24
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.23
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.22
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.21
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.2
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.17
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.17
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.16
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.14
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.13
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.13
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.12
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.09
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.08
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.08
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.07
3atr_A	453	Conserved archaeal protein; saturating double bond	98.07
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.07
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.03
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.03
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.02
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.02
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.01
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.99
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.99
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.98
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.97
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.96
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.96
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.95
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.94
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.92
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.92
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.9
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.9
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.84
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.83
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.81
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.77
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.76
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.73
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.73
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.73
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.71
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.7
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.69
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.68
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.68
3dme_A	369	Conserved exported protein; structural genomics, P	97.67
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.67
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.66
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.66
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.65
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.64
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.64
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.63
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.6
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.56
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.55
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.54
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.54
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.54
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.53
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.53
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.53
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.52
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.51
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.49
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.48
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.46
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.46
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.46
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.44
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.41
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.4
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.39
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.34
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.33
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.32
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.32
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.3
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.29
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.29
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.28
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.27
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.23
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.22
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.19
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.16
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.16
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.12
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.11
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.11
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.1
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.07
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.05
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	96.96
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.93
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	96.93
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	96.89
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	96.85
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.85
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.8
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.78
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.75
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.72
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.7
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.67
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.61
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.52
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.5
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.45
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.44
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.38
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.38
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.29
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.29
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.27
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.04
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.99
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	95.76
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.6
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.55
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.51
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	95.46
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.42
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.4
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	95.35
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	95.16
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.08
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.95
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.85
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	94.73
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.66
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.66
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.62
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	94.61
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.61
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.58
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.54
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	94.29
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.24
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.2
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.15
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.14
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.12
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.09
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.01
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.97
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.84
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.82
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.72
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.72
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	93.7
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.69
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.69
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.69
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.69
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.67
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.66
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.66
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	93.59
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.39
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.28
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.28
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.19
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.18
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.11
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.09
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.06
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.05
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.0
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.96
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.95
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.95
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.9
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.87
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.78
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.76
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.73
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.69
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.68
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.64
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.62
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.62
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.61
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.6
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.58
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.51
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.51
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.48
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	92.45
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.41
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	92.34
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.28
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.26
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.25
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.17
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	92.15
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.12
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.1
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	91.99
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	91.96
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.95
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.95
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.93
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.92
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	91.88
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	91.82
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.79
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.77
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	91.75
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.73
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.64
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	91.59
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	91.55
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.5
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	91.48
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.45
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	91.41
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	91.4
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.39
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	91.35
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.35
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	91.32
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	91.25
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	91.25
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.25
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.21
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.2
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.16
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	91.15
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.15
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.1
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.04
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	90.99
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.97
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.86
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	90.84
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.78
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	90.67
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.66
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	90.63
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.63
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	90.63
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.62
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	90.61
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.59
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	90.58
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	90.58
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	90.53
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	90.44
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.36
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.34
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	90.31
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	90.29
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	90.23
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	90.2
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.2
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	90.17
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	90.13
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.13
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.12
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.08
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	90.03
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	90.03
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.01
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	89.98
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	89.92
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	89.87
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	89.85
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	89.82
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.81
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.77
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.74
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.74
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	89.74
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	89.7
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	89.68
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.62
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	89.6
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	89.6
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.56
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	89.55
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	89.54
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	89.54
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	89.53
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	89.47
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	89.45
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.44
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	89.39
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.37
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	89.37
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	89.31
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	89.3
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.3
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	89.29
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	89.26
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	89.25
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	89.24
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.23
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	89.18
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	89.17
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	89.14
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.03
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	88.99
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	88.99
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	88.96
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	88.94
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	88.91
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	88.86
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	88.81
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	88.8
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	88.79
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	88.78
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	88.73
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	88.71

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=1.4e-54  Score=453.17  Aligned_cols=323  Identities=35%  Similarity=0.585  Sum_probs=256.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      ..+++||||||||+||+++|+.|++.+++|||||+++++.|.|+||+++.|.++.+++..++++..  +.+..++.|+.+
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~--~~~~~~v~~~~~  116 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFA--LKKKGNVTYYEA  116 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHH--TTCSSCEEEEEE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHH--HhhcCCeEEEEE
Confidence            344679999999999999999999999999999999999999999999999998888888887763  234568999999


Q ss_pred             EEEEEeCCCCEEEEEecCC---------CCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHH
Q 013561          186 SCIGIDTDKHEVYCETVNN---------GKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKK  256 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~---------~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~  256 (441)
                      +|++||++.++|+++....         ......++..+++||+||||||++|+.+++||.+++++++++++|+.+++++
T Consensus       117 ~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~  196 (502)
T 4g6h_A          117 EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRT  196 (502)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHH
T ss_pred             EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHH
Confidence            9999999999998875311         0001123346899999999999999999999999999999999999999887


Q ss_pred             HHHhc-------------------ccccCCCCceeEeeC-------------------ceEEE-------EccCCcccC-
Q 013561          257 LLLNL-------------------MLSENPGDTVQLFSK-------------------YFVIT-------ITLSFLVRL-  290 (441)
Q Consensus       257 i~~~~-------------------~~a~~~G~~~vE~a~-------------------~v~V~-------il~~~~~~l-  290 (441)
                      +...+                   .+.+ +|.+|+|+|.                   .++|+       +++.+++++ 
T Consensus       197 l~~~~e~a~~~~~~~~~~~~~~~vvVvG-gG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~  275 (502)
T 4g6h_A          197 FAANLEKANLLPKGDPERRRLLSIVVVG-GGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLS  275 (502)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHTEEEEEC-CSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHH
T ss_pred             HHHHHHHHhcccccchhhccccceEEEC-CCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHH
Confidence            64332                   2222 6777777761                   12333       111111100 


Q ss_pred             ---------------------------------------------------------------------------Cceee
Q 013561          291 ---------------------------------------------------------------------------SQIGV  295 (441)
Q Consensus       291 ---------------------------------------------------------------------------G~I~V  295 (441)
                                                                                                 |+|.|
T Consensus       276 ~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~V  355 (502)
T 4g6h_A          276 SYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAV  355 (502)
T ss_dssp             HHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEB
T ss_pred             HHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeE
Confidence                                                                                       78999


Q ss_pred             CCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhcccc-----CCCc----ccccCCCCCCC
Q 013561          296 DEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIGEQD-----GGKA----LSAKDINLGDP  366 (441)
Q Consensus       296 d~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~~~~-----~g~~----~~~~~~~~~~~  366 (441)
                      |++||++++|||||+|||+..       +.|++++.|++||+++|+||.+......     .+..    ....+.++ +|
T Consensus       356 d~~lq~~~~~~IfAiGD~a~~-------~~p~~a~~A~qqg~~~A~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p  427 (502)
T 4g6h_A          356 NDFLQVKGSNNIFAIGDNAFA-------GLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNF-KP  427 (502)
T ss_dssp             CTTSBBTTCSSEEECGGGEES-------SSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHTTSSSCCHHHHHHHTTC-CC
T ss_pred             CCccccCCCCCEEEEEcccCC-------CCCCchHHHHHHHHHHHHHHHHHhccchhhhhhhhccchhhhhhcCCCC-CC
Confidence            999999999999999999964       4689999999999999999986432000     0000    00011254 99


Q ss_pred             ceeecceeEEEecCCceeeecccccCCCCeEEccHHHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCCCC
Q 013561          367 FVYKHLGSMATVGRYKALVDLRQSKDEKGISLAGFLSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDISR  440 (441)
Q Consensus       367 f~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  440 (441)
                      |+|.++|+|++||+++||++++++. ..++.++|++||++|+++|+.++++||||++++++|++++|||||++|
T Consensus       428 F~y~~~G~~a~lG~~~av~~~~~~~-~~~~~~~G~~a~~~w~~~yl~~l~~~r~r~~v~~~W~~~~~fgRdisr  500 (502)
T 4g6h_A          428 FKYNDLGALAYLGSERAIATIRSGK-RTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDFFK  500 (502)
T ss_dssp             CCCCCCEEEEECSTTCEEEEEEETT-EEEEEEEEHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred             CEecCcceEEEEeCCceEEEccCCC-ccceecccHHHHHHHHHHHHHHccchhhhHHHHHHHHHHHhCCCCCcC
Confidence            9999999999999999999986532 134677899999999999999999999999999999999999999997

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=1.7e-40  Score=340.59  Aligned_cols=302  Identities=20%  Similarity=0.204  Sum_probs=228.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .|+|||||||+||+++|..|++.  +++|||||+++++.|.|+++.+..|..+.+++..+++++   +. ..+++|+.++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~---~~-~~gv~~i~~~   77 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPL---LP-KFNIEFINEK   77 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTT---GG-GGTEEEECSC
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHH---HH-HCCcEEEEeE
Confidence            46899999999999999999874  489999999999999999999999998888888887775   32 3589999999


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcc----
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLM----  262 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~----  262 (441)
                      |++||+++++|+++++           .+++||+||||||+++. +++||.+++++.+++++++.++++++.+...    
T Consensus        78 v~~Id~~~~~V~~~~g-----------~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~  145 (430)
T 3hyw_A           78 AESIDPDANTVTTQSG-----------KKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGP  145 (430)
T ss_dssp             EEEEETTTTEEEETTC-----------CEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCEEEECCC-----------CEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCce
Confidence            9999999999987653           37999999999999864 5799998999999999999998887643211    


Q ss_pred             cccCCCCceeEee-------------------------------------------------------CceEE------E
Q 013561          263 LSENPGDTVQLFS-------------------------------------------------------KYFVI------T  281 (441)
Q Consensus       263 ~a~~~G~~~vE~a-------------------------------------------------------~~v~V------~  281 (441)
                      +.. +|..|+|++                                                       .++++      +
T Consensus       146 vv~-gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~  224 (430)
T 3hyw_A          146 VVI-GAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVK  224 (430)
T ss_dssp             EEE-EECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEE
T ss_pred             EEE-eCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEE
Confidence            100 111122211                                                       00111      0


Q ss_pred             -------Ecc---------------------------CCcccC-----CceeeCCCcccCCCCCEEEecccccccccCCC
Q 013561          282 -------ITL---------------------------SFLVRL-----SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGK  322 (441)
Q Consensus       282 -------il~---------------------------~~~~~l-----G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~  322 (441)
                             ++.                           .....+     |+|.||++||++++|||||+|||+++++..+.
T Consensus       225 ~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~  304 (430)
T 3hyw_A          225 AIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKT  304 (430)
T ss_dssp             EECSSEEEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCC
T ss_pred             EEeCCceEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccC
Confidence                   000                           000000     67999999996699999999999998764432


Q ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecceeEEEecCCceeeecccccC--CCCeE
Q 013561          323 ---PVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYKALVDLRQSKD--EKGIS  397 (441)
Q Consensus       323 ---~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~av~~~~~~~~--~~~~~  397 (441)
                         ...|++++.|++||+++|+||.+.|.    |+       +. +++.+...+.++++|.+.++........  ...+.
T Consensus       305 ~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~----g~-------~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  372 (430)
T 3hyw_A          305 PIPTGVPKTGMMIEQMAMAVAHNIVNDIR----NN-------PD-KYAPRLSAICIADFGEDAGFFFADPVIPPRERVIT  372 (430)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHHHHHHHT----TC-------CC-CEEECCCEEEEEECSSSEEEEEEESSSSSCSEEEE
T ss_pred             cCcCccchHHHHHHHHHHHHHHHHHHHhc----CC-------CC-CcccCCcEEEEEEcCCCcEEEEEcccCCccccccc
Confidence               13689999999999999999999996    66       32 4344445678899999999876532111  11233


Q ss_pred             EccH---------HHHHHHHHHHHhhcCCcchhHHhHHHHHHHhccCCCCC
Q 013561          398 LAGF---------LSWLIWRSAYLTRVLSWRNRFYVAVNWATTFVFGRDIS  439 (441)
Q Consensus       398 ~~G~---------~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  439 (441)
                      ..|.         ..|++|+..|..+++.|+||+++.++|+....+.||+.
T Consensus       373 ~~g~~~~~~K~~~~~~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  423 (430)
T 3hyw_A          373 KMGKWAHYFKTAFEKYFLWKVRNGNIAPSFEEKVLEIFLKVHPIELCKDCE  423 (430)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHCCCSEEECSCCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCccHhHHHHHHHHHhcccccccCcccc
Confidence            3444         45678888889999999999999999999999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=4.6e-37  Score=317.07  Aligned_cols=186  Identities=12%  Similarity=0.090  Sum_probs=133.9

Q ss_pred             cccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCC
Q 013561           26 DIGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEA  103 (441)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~  103 (441)
                      .-||+++++|+ |.+|+++++++||||++||||||+  +||.+|+++.....++.++.+|+++.|.+++   .+|..+.+
T Consensus        41 ~~~~~~~~~g~-~~~A~~~~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~---~~~~~~~~  116 (456)
T 2vdc_G           41 PDWLKLTSEGR-LEEAYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWD---QGWVKPRT  116 (456)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHH---HTCCCCCC
T ss_pred             HHHHHHHHCCC-HHHHHHHHHhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHH---cCCCCCCC
Confidence            34999999999 999999999999999999999999  9999999996524567888999999987776   44544433


Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      +...++++|+||||||||+++|..|++.|++|||||+.++++  +++   .+|.+.+..-...+....+.+. ..+++|+
T Consensus       117 ~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~G--G~l---~~gip~~~~~~~~~~~~~~~l~-~~gv~~~  190 (456)
T 2vdc_G          117 PSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMG--GLL---VYGIPGFKLEKSVVERRVKLLA-DAGVIYH  190 (456)
T ss_dssp             SCSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCS--THH---HHTSCTTTSCHHHHHHHHHHHH-HTTCEEE
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC--Cee---eecCCCccCCHHHHHHHHHHHH-HCCcEEE
Confidence            334567899999999999999999999999999999998765  222   1222222110111122222222 3467776


Q ss_pred             EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          184 LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       184 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      .+..++     +.+.+.+            ..+.||+||||||+. |+.+++||.+
T Consensus       191 ~~~~v~-----~~v~~~~------------~~~~~d~vvlAtG~~~~~~~~ipG~~  229 (456)
T 2vdc_G          191 PNFEVG-----RDASLPE------------LRRKHVAVLVATGVYKARDIKAPGSG  229 (456)
T ss_dssp             TTCCBT-----TTBCHHH------------HHSSCSEEEECCCCCEECCTTCSCCT
T ss_pred             eCCEec-----cEEEhhH------------hHhhCCEEEEecCCCCCCCCCCCCCc
Confidence            554321     1122211            246799999999996 7788899864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.97  E-value=1.3e-33  Score=317.31  Aligned_cols=186  Identities=13%  Similarity=0.116  Sum_probs=130.8

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCccccc--ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMT--THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~--~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      -||+++++|+ |++|++++++|||||++||||||+  +||.+|+++.....++.|+.+|+++.|..++.   ++.....+
T Consensus        99 ~~~~~~~~g~-~~~A~~~~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~---~~~~~~~p  174 (1025)
T 1gte_A           99 SFITSISNKN-YYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAM---NIPQIRNP  174 (1025)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHH---TCCCCCCT
T ss_pred             HHHHHHHCCC-HHHHHHHHHhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHh---CCccccCc
Confidence            4999999999 999999999999999999999998  89999999865445778999999999976653   33222111


Q ss_pred             --------CCCCCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhc
Q 013561          105 --------KPGEKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLS  175 (441)
Q Consensus       105 --------~~~~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~  175 (441)
                              +..++++|+||||||||+++|..|++.|+ +|||||+.++++.  ++   .++.+.+......+....+.+ 
T Consensus       175 ~~~~~~~~~~~~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG--~~---~~~ip~~~~~~~~~~~~~~~~-  248 (1025)
T 1gte_A          175 CLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG--LS---TSEIPQFRLPYDVVNFEIELM-  248 (1025)
T ss_dssp             TSCCGGGSCGGGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST--HH---HHTSCTTTSCHHHHHHHHHHH-
T ss_pred             cccccccCCccCCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCc--cc---cccCCcccCCHHHHHHHHHHH-
Confidence                    11346799999999999999999999999 7999999887652  22   222322221111122212222 


Q ss_pred             CCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC-CcCCCCC-CCc
Q 013561          176 SDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA-EPLTFGI-KGV  237 (441)
Q Consensus       176 ~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs-~p~~~~i-pG~  237 (441)
                      +..+++++.+..++.    +.+++.+.           .++.||+||||||+ .|+.+++ ||.
T Consensus       249 ~~~gv~~~~~~~v~~----~~v~~~~~-----------~~~~~d~vvlAtGa~~p~~l~~~~G~  297 (1025)
T 1gte_A          249 KDLGVKIICGKSLSE----NEITLNTL-----------KEEGYKAAFIGIGLPEPKTDDIFQGL  297 (1025)
T ss_dssp             HTTTCEEEESCCBST----TSBCHHHH-----------HHTTCCEEEECCCCCEECCCGGGTTC
T ss_pred             HHCCcEEEcccEecc----ceEEhhhc-----------CccCCCEEEEecCCCCCCCCCCCCCC
Confidence            345788877654321    22332221           24789999999999 5877654 454

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.97  E-value=8.9e-31  Score=268.83  Aligned_cols=285  Identities=17%  Similarity=0.114  Sum_probs=205.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++|||||||++|+++|..|++   .|++|||||+++++.|.+.++....|....+++...+.+.   +. ..++.++.+
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~-~~gv~~~~~   79 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHY---VE-RKGIHFIAQ   79 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHH---HH-TTTCEEECS
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHH---HH-HCCCEEEEe
Confidence            5799999999999999999998   8999999999999999999888888877766666666665   32 357888889


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc---ccccccCHhHHHHHHHHHHHh--
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE---NAYFLREVNHAQEIRKKLLLN--  260 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~---~~~~l~~~~~a~~~~~~i~~~--  260 (441)
                      +|++++.+.+.|.+.++           .++.||+||+|||++|+.+.+||.++   +++.+.+++++.++++.+...  
T Consensus        80 ~v~~id~~~~~V~~~~g-----------~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  148 (437)
T 3sx6_A           80 SAEQIDAEAQNITLADG-----------NTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLR  148 (437)
T ss_dssp             CEEEEETTTTEEEETTS-----------CEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCEEEECCC-----------CEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHh
Confidence            99999999888876542           36899999999999999999999863   566788888888777654221  


Q ss_pred             ---cccccC-C--CCce--eEee-------------------------------------------------CceEE---
Q 013561          261 ---LMLSEN-P--GDTV--QLFS-------------------------------------------------KYFVI---  280 (441)
Q Consensus       261 ---~~~a~~-~--G~~~--vE~a-------------------------------------------------~~v~V---  280 (441)
                         ..+.+. .  |..|  +|+|                                                 .++++   
T Consensus       149 ~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~  228 (437)
T 3sx6_A          149 EPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTN  228 (437)
T ss_dssp             SCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECS
T ss_pred             CCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcC
Confidence               111110 0  1111  2221                                                 00000   


Q ss_pred             ---E------------------------------EccC------------CcccCCceeeCCCcccCCCCCEEEeccccc
Q 013561          281 ---T------------------------------ITLS------------FLVRLSQIGVDEWLRAPSVEDVFALGDCAG  315 (441)
Q Consensus       281 ---~------------------------------il~~------------~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~  315 (441)
                         +                              +.+.            +..+-|+|.||++|||+++|||||+|||+.
T Consensus       229 ~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~  308 (437)
T 3sx6_A          229 CKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIA  308 (437)
T ss_dssp             EEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBC
T ss_pred             CEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEec
Confidence               0                              0000            000018899999999989999999999998


Q ss_pred             ccccCCCC---CCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecce-eEEEecCCceeeec-ccc
Q 013561          316 FLEQTGKP---VLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLG-SMATVGRYKALVDL-RQS  390 (441)
Q Consensus       316 ~~~~~G~~---~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g-~~~~lG~~~av~~~-~~~  390 (441)
                      +++..+.+   ..|++++.|++||+.+|+||.+.|.    |+       ++ .+|.+.... .++.+|.+.++... +..
T Consensus       309 ~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~----g~-------~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~  376 (437)
T 3sx6_A          309 IPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLE----GR-------KG-EQTMGTWNAVAFADMGDRGAAFIALPQL  376 (437)
T ss_dssp             CCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTT----TS-------CC-CCCCCSCCEEEEEECSSCEEEEEEESSS
T ss_pred             cCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhc----CC-------CC-CCcccCcceEEEEEeCCCceEEEeCCCC
Confidence            76543321   2578999999999999999999996    66       32 676666444 45679987666422 100


Q ss_pred             -cCCCCeEEccHHHHHHHHHHHHhhcCCcch
Q 013561          391 -KDEKGISLAGFLSWLIWRSAYLTRVLSWRN  420 (441)
Q Consensus       391 -~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~  420 (441)
                       +....+.+.|.++|++|..++..++..+++
T Consensus       377 p~~~~~~~~~g~~~~~~K~~~~~~f~~~~~~  407 (437)
T 3sx6_A          377 KPRKVDVFAYGRWVHLAKVAFEKYFIRKMKM  407 (437)
T ss_dssp             SSCSEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccHHHHHHHHHHHHHHHHHhcc
Confidence             122467899999999999998888866554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.97  E-value=9.8e-30  Score=257.69  Aligned_cols=267  Identities=19%  Similarity=0.190  Sum_probs=185.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      +||||||||||||+++|.+|++.+  .+|||||+++++.+.|+++.+..|..+.+++..+++.+.   .  .+++|++++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~---~--~gv~~i~~~   76 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLR---A--HGIQVVHDS   76 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHH---H--TTCEEECSC
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHH---H--CCCEEEEeE
Confidence            689999999999999999998754  699999999999999999999988888777777776652   2  478999999


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc-----ccccccCHhHHHHHHHHHHHhc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE-----NAYFLREVNHAQEIRKKLLLNL  261 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~-----~~~~l~~~~~a~~~~~~i~~~~  261 (441)
                      |++||++.+.+.+.++           .+++||+||||||++++.+++||.++     ..+.+++.+++..+++.+....
T Consensus        77 v~~id~~~~~v~~~~g-----------~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (401)
T 3vrd_B           77 ALGIDPDKKLVKTAGG-----------AEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMD  145 (401)
T ss_dssp             EEEEETTTTEEEETTS-----------CEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSC
T ss_pred             EEEEEccCcEEEeccc-----------ceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcc
Confidence            9999999999887653           37999999999999999999999753     3456778888888887764321


Q ss_pred             c----cccCCCCce-------e----Eee-----------------------------------------CceEEE----
Q 013561          262 M----LSENPGDTV-------Q----LFS-----------------------------------------KYFVIT----  281 (441)
Q Consensus       262 ~----~a~~~G~~~-------v----E~a-----------------------------------------~~v~V~----  281 (441)
                      .    +.. .+..+       .    |++                                         ..+++.    
T Consensus       146 ~~~~~v~~-~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~  224 (401)
T 3vrd_B          146 DGGVVIIA-PPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPD  224 (401)
T ss_dssp             TTCEEEEE-CCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTT
T ss_pred             cCCcEEEe-cCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCce
Confidence            0    000 01000       0    000                                         001110    


Q ss_pred             ---------------------------EccC-----------CcccCCceeeCCC-cccCCCCCEEEecccccccccCCC
Q 013561          282 ---------------------------ITLS-----------FLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGK  322 (441)
Q Consensus       282 ---------------------------il~~-----------~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~  322 (441)
                                                 +.+.           +..+-|+|.||++ ||.+++|||||+|||+..      
T Consensus       225 v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~------  298 (401)
T 3vrd_B          225 AAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNA------  298 (401)
T ss_dssp             TCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCC------
T ss_pred             EEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccC------
Confidence                                       0000           0000189999986 786699999999999832      


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCCCceeecceeE-EEecCCceeeec-ccc---------c
Q 013561          323 PVLPALAQVAERQGKYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHLGSM-ATVGRYKALVDL-RQS---------K  391 (441)
Q Consensus       323 ~~~p~~a~~A~~qg~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~-~~lG~~~av~~~-~~~---------~  391 (441)
                      .+.|++++.|++||+++|+||.+.|.    |+       + +.||.|.....+ +..|....+... .++         .
T Consensus       299 ~~~pk~a~~A~~qa~v~A~ni~~~l~----G~-------~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  366 (401)
T 3vrd_B          299 APMPKSAYSANSQAKVAAAAVVALLK----GE-------E-PGTPSYLNTCYSILAPGYGISIAAVYRPNAEGKAIEAVP  366 (401)
T ss_dssp             TTSCBSHHHHHHHHHHHHHHHHHHHH----TC-------C-CCCCCEEEEEEEEEETTEEEEEEEEEEECTTSSSEEECT
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhc----CC-------C-CCCcccCCeEEEEEecCCceEEEEEecccCCCceEEEec
Confidence            24689999999999999999999997    76       2 266666654322 222322222111 000         0


Q ss_pred             CCCCeEEccHHHHHHHHHH
Q 013561          392 DEKGISLAGFLSWLIWRSA  410 (441)
Q Consensus       392 ~~~~~~~~G~~a~~~~~~~  410 (441)
                      ..++....++..|++|+..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~  385 (401)
T 3vrd_B          367 DSGGITPVDAPDWVLEREV  385 (401)
T ss_dssp             TCCEESCTTCCHHHHHHHH
T ss_pred             ccCCcccccchhHHHhccc
Confidence            1134556678899988753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.95  E-value=2.9e-27  Score=238.83  Aligned_cols=216  Identities=18%  Similarity=0.209  Sum_probs=162.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc-ccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF-TPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~-~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      ..++.||+|||||+||+++|..|...+++|||||+++++.| .+.++....+..+.+++.....+.   +. ..++.++.
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~---~~-~~~i~~~~   81 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDW---YE-KNNIKVIT   81 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHH---HH-HTTCEEEC
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHH---HH-HCCCEEEe
Confidence            34467999999999999999999888999999999998866 577777777765555544444443   22 24677776


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH--hc
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL--NL  261 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~--~~  261 (441)
                      + +|++||.+.+.|++.++           .++.||+||||||++|+.|++||.+ +++.+++.+++.+++..+..  .+
T Consensus        82 ~~~V~~id~~~~~v~~~~g-----------~~~~yd~lvlAtG~~p~~p~i~G~~-~v~~~~~~~d~~~l~~~l~~~~~v  149 (385)
T 3klj_A           82 SEFATSIDPNNKLVTLKSG-----------EKIKYEKLIIASGSIANKIKVPHAD-EIFSLYSYDDALKIKDECKNKGKA  149 (385)
T ss_dssp             SCCEEEEETTTTEEEETTS-----------CEEECSEEEECCCEEECCCCCTTCS-CEECCSSHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEEECCCCEEEECCC-----------CEEECCEEEEecCCCcCCCCCCCCC-CeEEeCCHHHHHHHHHHhhcCCeE
Confidence            5 79999999998877653           3789999999999999999999987 88889999999998876532  23


Q ss_pred             ccccCCCCceeEeeC-----ceEEEEc-------cC-Ccc----------------------------------------
Q 013561          262 MLSENPGDTVQLFSK-----YFVITIT-------LS-FLV----------------------------------------  288 (441)
Q Consensus       262 ~~a~~~G~~~vE~a~-----~v~V~il-------~~-~~~----------------------------------------  288 (441)
                      .+.+ +|..|+|+|.     ..+|+++       +. +++                                        
T Consensus       150 vVIG-gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ig~~~~~D~vv~a~G  228 (385)
T 3klj_A          150 FIIG-GGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSCVITAVG  228 (385)
T ss_dssp             EEEC-CSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGCHHHHHHSEEEECCC
T ss_pred             EEEC-CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEcCeEEecCeEEECcC
Confidence            3344 5677766651     1222211       00 000                                        


Q ss_pred             ---------c--C---CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          289 ---------R--L---SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       289 ---------~--l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                               .  +   +.|.||++||| +.|+|||+|||+.+++     ..+.++..|++||+.+|+||.
T Consensus       229 ~~p~~~~~~~~gl~~~~gi~vd~~~~t-~~~~IyA~GD~a~~~~-----~~~~~~~~A~~qg~~aa~~i~  292 (385)
T 3klj_A          229 VKPNLDFIKDTEIASKRGILVNDHMET-SIKDIYACGDVAEFYG-----KNPGLINIANKQGEVAGLNAC  292 (385)
T ss_dssp             EEECCGGGTTSCCCBSSSEEECTTCBC-SSTTEEECGGGEEETT-----BCCCCHHHHHHHHHHHHHHHT
T ss_pred             cccChhhhhhcCCCcCCCEEECCCccc-CCCCEEEEEeeEecCC-----CcccHHHHHHHHHHHHHHHhc
Confidence                     0  0   45999999999 9999999999997643     246789999999999999997

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.94  E-value=1.5e-26  Score=237.46  Aligned_cols=222  Identities=20%  Similarity=0.252  Sum_probs=158.2

Q ss_pred             cEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccc-cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EE
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-AS  186 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~-~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~  186 (441)
                      |||||||||||++||..|++.|  .+|+|||+++++.|. ++++....+............. .. +.+..++.+.. .+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~   79 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTP-EK-FYDRKQITVKTYHE   79 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCH-HH-HHHHHCCEEEETEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCH-HH-HHHhcCCEEEeCCe
Confidence            7999999999999999998876  679999999988775 4566555554433221111111 01 22223566644 58


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHh----cc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLN----LM  262 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~----~~  262 (441)
                      |+.||.+.+.+.+.....      ++..++.||+||||||++|+.|++||  ++.+.+++++++..+.+.+...    +.
T Consensus        80 V~~id~~~~~~~~~~~~~------~~~~~~~yd~lVIATGs~p~~p~i~g--~~~~~~~~~~~~~~l~~~~~~~~~~~vv  151 (437)
T 4eqs_A           80 VIAINDERQTVSVLNRKT------NEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKANQVDKVL  151 (437)
T ss_dssp             EEEEETTTTEEEEEETTT------TEEEEEECSEEEECCCEEECCCCCCC--TTEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             EEEEEccCcEEEEEeccC------CceEEEEcCEEEECCCCccccccccC--ceEEeeccHHHHHHHHHhhhccCCcEEE
Confidence            999999999998877532      22357899999999999999999988  4667789999998887765322    23


Q ss_pred             cccCCCCceeEeeC-----ceEEE-------EccCCcccC----------------------------------------
Q 013561          263 LSENPGDTVQLFSK-----YFVIT-------ITLSFLVRL----------------------------------------  290 (441)
Q Consensus       263 ~a~~~G~~~vE~a~-----~v~V~-------il~~~~~~l----------------------------------------  290 (441)
                      +.+ +|..++|+|.     ..+|+       +++.+++++                                        
T Consensus       152 ViG-gG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D  230 (437)
T 4eqs_A          152 VVG-AGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYD  230 (437)
T ss_dssp             EEC-CSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECS
T ss_pred             EEC-CccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeee
Confidence            333 5777777661     11222       111111110                                        


Q ss_pred             -------------------------CceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 -------------------------SQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 -------------------------G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                                               |+|.||+++|| ++|||||+|||+..++. .|.+..+++++.|.+||+++|+||.
T Consensus       231 ~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~  309 (437)
T 4eqs_A          231 MIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIA  309 (437)
T ss_dssp             EEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeceecCcHHHHhhhhhhccCCcEecCCCccC-CCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHc
Confidence                                     78999999999 99999999999987653 3555577899999999999999998

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.93  E-value=7.3e-26  Score=230.00  Aligned_cols=220  Identities=22%  Similarity=0.276  Sum_probs=161.7

Q ss_pred             CcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      ++|+|||||++|+++|..|++   .|++|||||+++++.|.+.++....+....+++...+.+.   +. ..++.++.++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~gv~~~~~~   77 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEA---LP-EKGIQFQEGT   77 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHH---TG-GGTCEEEECE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHH---Hh-hCCeEEEEee
Confidence            589999999999999999999   8999999999999888887766666665655565556554   22 3478888889


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHh---ccc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLN---LML  263 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~---~~~  263 (441)
                      |+.++.+.+.|.+.+...       +..++.||+||+|+|++|+.+.+||.+++.+.+.+.+++.++++.+...   ..+
T Consensus        78 v~~i~~~~~~V~~~~g~~-------~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV  150 (409)
T 3h8l_A           78 VEKIDAKSSMVYYTKPDG-------SMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIA  150 (409)
T ss_dssp             EEEEETTTTEEEEECTTS-------CEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEE
T ss_pred             EEEEeCCCCEEEEccCCc-------ccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEE
Confidence            999999999988876421       1245899999999999999999999877767777888888877755321   011


Q ss_pred             ccCCC-------------------C------ceeEeeC-------------ceEEE------------------------
Q 013561          264 SENPG-------------------D------TVQLFSK-------------YFVIT------------------------  281 (441)
Q Consensus       264 a~~~G-------------------~------~~vE~a~-------------~v~V~------------------------  281 (441)
                      .+ +|                   .      .++|++.             .++|+                        
T Consensus       151 iG-~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~  229 (409)
T 3h8l_A          151 IG-SGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYN  229 (409)
T ss_dssp             EE-ECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHH
T ss_pred             EE-ecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHH
Confidence            11 11                   0      0112210             01111                        


Q ss_pred             ---------------------------------E----------ccCC--c--ccCCceeeCCCcccCCCCCEEEecccc
Q 013561          282 ---------------------------------I----------TLSF--L--VRLSQIGVDEWLRAPSVEDVFALGDCA  314 (441)
Q Consensus       282 ---------------------------------i----------l~~~--~--~~lG~I~Vd~~lqt~~~~~VfA~GD~a  314 (441)
                                                       +          +...  +  .+-|+|.||+++|++++|||||+|||+
T Consensus       230 ~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~  309 (409)
T 3h8l_A          230 QLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDAN  309 (409)
T ss_dssp             HHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGB
T ss_pred             HCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhc
Confidence                                             0          0011  0  011789999999998999999999999


Q ss_pred             cccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          315 GFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       315 ~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      .+       +.|+++..|..||+++|+||.+.|.
T Consensus       310 ~~-------~~~~~~~~A~~q~~~aa~~i~~~l~  336 (409)
T 3h8l_A          310 SM-------TVPKLGYLAVMTGRIAAQHLANRLG  336 (409)
T ss_dssp             TT-------CCSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cC-------CCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            54       2578999999999999999999884

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.93  E-value=1.3e-25  Score=228.56  Aligned_cols=243  Identities=18%  Similarity=0.244  Sum_probs=167.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe--EEEEcCCCCcccc--cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD--AVCISPRNHMVFT--PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~--Vtvie~~~~~~~~--~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++|+|||||+||+++|..|++.|++  |+|||+++++.|.  ++......|....+.+ ......   +. ..+++++.
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~---~~-~~~i~~~~   76 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADW---YG-EARIDMLT   76 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTH---HH-HTTCEEEE
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHH---HH-HCCCEEEe
Confidence            45899999999999999999999887  9999999988775  3334455555544443 222222   22 24788888


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH--Hh
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL--LN  260 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~--~~  260 (441)
                      + +++.++.+.+.+.+.++           .++.||+||||||+.|+.|++||.+ ++++.+++.+++..++..+.  ..
T Consensus        77 ~~~v~~id~~~~~v~~~~g-----------~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~  145 (410)
T 3ef6_A           77 GPEVTALDVQTRTISLDDG-----------TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATR  145 (410)
T ss_dssp             SCCEEEEETTTTEEEETTS-----------CEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCE
T ss_pred             CCEEEEEECCCCEEEECCC-----------CEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCe
Confidence            7 89999999988877542           3789999999999999999999986 67888999999988876441  11


Q ss_pred             cccccCCCCceeEeeC-----ceEEE------------------------------------------------------
Q 013561          261 LMLSENPGDTVQLFSK-----YFVIT------------------------------------------------------  281 (441)
Q Consensus       261 ~~~a~~~G~~~vE~a~-----~v~V~------------------------------------------------------  281 (441)
                      +.+.+ +|..++|+|.     ..+|+                                                      
T Consensus       146 vvViG-gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~d  224 (410)
T 3ef6_A          146 LLIVG-GGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASD  224 (410)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETT
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECC
Confidence            22222 3333333320     00010                                                      


Q ss_pred             ---------Ec-----cC--------CcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          282 ---------IT-----LS--------FLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       282 ---------il-----~~--------~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                               ++     +.        +..+ +.|.||+++|| +.|+|||+|||+..++..|.+..++++..|+.||+.+
T Consensus       225 g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t-~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~a  302 (410)
T 3ef6_A          225 GRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGAT-LAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAV  302 (410)
T ss_dssp             SCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBC-SSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHH
T ss_pred             CCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeE-CCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHH
Confidence                     00     00        0001 45999999999 9999999999998765444444567899999999999


Q ss_pred             HHHHHHHhccccCCCcccccCCCCCCCceeecc-e-eEEEecCCc
Q 013561          340 AELFNKKIGEQDGGKALSAKDINLGDPFVYKHL-G-SMATVGRYK  382 (441)
Q Consensus       340 A~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~-g-~~~~lG~~~  382 (441)
                      |+||.        |+.   .+++. .||.+.+. + .+.++|...
T Consensus       303 a~~i~--------g~~---~~~~~-~p~~~~~~~~~~~~~~G~~~  335 (410)
T 3ef6_A          303 AAAIL--------GKN---VSAPQ-LPVSWTEIAGHRMQMAGDIE  335 (410)
T ss_dssp             HHHHT--------TCC---CCCCB-CCEEEEEETTEEEEEESCSS
T ss_pred             HHHHc--------CCC---CCCCC-CCeeEEEECCceEEEEcCCC
Confidence            99997        321   11232 56666543 3 456677543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.93  E-value=4.6e-25  Score=221.36  Aligned_cols=211  Identities=24%  Similarity=0.335  Sum_probs=151.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc-cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~-~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      +.+|+||||||||+++|..|++.| +|+|||+++...|. ++++....|..+.+.+.....+.   +. ..+++++.+ +
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~-~~~v~~~~g~~   82 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW---YR-KRGIEIRLAEE   82 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHH---HH-HHTEEEECSCC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHH---HH-hCCcEEEECCE
Confidence            569999999999999999999999 99999999876554 66666665655554444433333   22 247888877 6


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHH--Hhcccc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL--LNLMLS  264 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~--~~~~~a  264 (441)
                      |+.+|.+.+.|. .++           .++.||+||||||++|+.|++|| .++++.+++.+++.++++.+.  ..+.+.
T Consensus        83 v~~id~~~~~V~-~~g-----------~~~~~d~lViATGs~p~~p~i~G-~~~v~~~~~~~~~~~l~~~~~~~~~vvVi  149 (367)
T 1xhc_A           83 AKLIDRGRKVVI-TEK-----------GEVPYDTLVLATGARAREPQIKG-KEYLLTLRTIFDADRIKESIENSGEAIII  149 (367)
T ss_dssp             EEEEETTTTEEE-ESS-----------CEEECSEEEECCCEEECCCCSBT-GGGEECCCSHHHHHHHHHHHHHHSEEEEE
T ss_pred             EEEEECCCCEEE-ECC-----------cEEECCEEEECCCCCCCCCCCCC-cCCEEEEcCHHHHHHHHHHhhcCCcEEEE
Confidence            999999888876 332           37899999999999999999999 567888889999988876542  223333


Q ss_pred             cCCCCceeEeeC-----ceEEEEc-------c-------------------------------------C--CcccC---
Q 013561          265 ENPGDTVQLFSK-----YFVITIT-------L-------------------------------------S--FLVRL---  290 (441)
Q Consensus       265 ~~~G~~~vE~a~-----~v~V~il-------~-------------------------------------~--~~~~l---  290 (441)
                      + +|..|+|+|.     +.+|+++       +                                     .  ++.+.   
T Consensus       150 G-gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~i~~D~vi~  228 (367)
T 1xhc_A          150 G-GGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSGFIEGKVKIC  228 (367)
T ss_dssp             E-CSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTEEEECSCEEE
T ss_pred             C-CCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCCEEEcCEEEE
Confidence            3 4555544441     1111100       0                                     0  00000   


Q ss_pred             -------------------CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 -------------------SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 -------------------G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                                         +.|.||+++|| +.|+|||+|||+...   +  ..++++..|++||+.+|+||.
T Consensus       229 a~G~~p~~~ll~~~gl~~~~gi~Vd~~~~t-~~~~IyA~GD~a~~~---~--~~~~~~~~A~~qg~~aa~~i~  295 (367)
T 1xhc_A          229 AIGIVPNVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEYS---G--IIAGTAKAAMEQARVLADILK  295 (367)
T ss_dssp             ECCEEECCHHHHHTTCCBSSSEECCTTSBC-SSTTEEECGGGEEBT---T--BCCCSHHHHHHHHHHHHHHHT
T ss_pred             CcCCCcCHHHHHhCCCCCCCCEEECCCccc-CCCCEEEeEeeeecC---C--CCccHHHHHHHHHHHHHHHhc
Confidence                               45999999999 999999999999652   1  235789999999999999997

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.93  E-value=4.6e-25  Score=224.67  Aligned_cols=245  Identities=20%  Similarity=0.290  Sum_probs=166.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe--EEEEcCCCCcccc--cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD--AVCISPRNHMVFT--PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~--Vtvie~~~~~~~~--~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++|+|||||+||+++|..|++.|++  |||||+++++.|.  ++......+......+.......   + ...++.++.
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~~   84 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQF---W-EDKAVEMKL   84 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHH---H-HHTTEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHH---H-HHCCcEEEe
Confidence            56899999999999999999999987  9999999987765  23223343433333333322222   2 235788888


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH---
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL---  259 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~---  259 (441)
                      + +++.++.+.+.+.+.++           ..+.||+||||||+.|+.|++||.+ ++++.+++.+++..+...+..   
T Consensus        85 ~~~v~~id~~~~~v~~~~g-----------~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~  153 (415)
T 3lxd_A           85 GAEVVSLDPAAHTVKLGDG-----------SAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAK  153 (415)
T ss_dssp             TCCEEEEETTTTEEEETTS-----------CEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEEECCCCEEEECCC-----------CEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCC
Confidence            7 89999999998877542           3789999999999999999999986 678889999999888776532   


Q ss_pred             hcccccCCCCceeEeeC--------------------------------------ceE-------------------EE-
Q 013561          260 NLMLSENPGDTVQLFSK--------------------------------------YFV-------------------IT-  281 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~--------------------------------------~v~-------------------V~-  281 (441)
                      .+.+.+ +|..++|+|.                                      +++                   |. 
T Consensus       154 ~vvViG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l  232 (415)
T 3lxd_A          154 NAVVIG-GGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRM  232 (415)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEE
T ss_pred             eEEEEC-CCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEe
Confidence            112222 2333322220                                      000                   10 


Q ss_pred             -----------Ecc-CCccc----------C-CceeeCCCcccCCCCCEEEeccccccccc-C-CCCCCCchHHHHHHHH
Q 013561          282 -----------ITL-SFLVR----------L-SQIGVDEWLRAPSVEDVFALGDCAGFLEQ-T-GKPVLPALAQVAERQG  336 (441)
Q Consensus       282 -----------il~-~~~~~----------l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~-G~~~~p~~a~~A~~qg  336 (441)
                                 ++. +..+.          . +.|.||+++|| +.|+|||+|||+..+.+ . |.+..+.++..|..||
T Consensus       233 ~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~vd~~~~t-~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg  311 (415)
T 3lxd_A          233 QDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRT-SLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMA  311 (415)
T ss_dssp             SSSCEEECSEEEECSCCEESCHHHHHTTCCCSSSEECCTTCBC-SSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHH
T ss_pred             CCCCEEEcCEEEECCCCccChHHHHhCCCCcCCCEEECCCCCc-CCCCEEEEEeeeeecCcccCCcceeechHHHHHHHH
Confidence                       100 00000          0 45999999999 99999999999987652 2 5555667899999999


Q ss_pred             HHHHHHHHHHhccccCCCcccccCCCCCCCceeecc-e-eEEEecCCc
Q 013561          337 KYLAELFNKKIGEQDGGKALSAKDINLGDPFVYKHL-G-SMATVGRYK  382 (441)
Q Consensus       337 ~~aA~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~-g-~~~~lG~~~  382 (441)
                      +.+|+||.        |+.   ..++ ..||.+.+. + .+.++|...
T Consensus       312 ~~aa~~i~--------g~~---~~~~-~~p~~~~~~~~~~~~~~G~~~  347 (415)
T 3lxd_A          312 TAAAKDIC--------GAP---VPYK-ATPWFWSNQYDLKLQTVGLST  347 (415)
T ss_dssp             HHHHHHHT--------TCC---CCCC-CCCEEEEEETTEEEEEEECCT
T ss_pred             HHHHHHhc--------CCC---CCCC-CCCeeEeeeCCcEEEEEeCCC
Confidence            99999997        321   0123 267766543 3 466777543

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.92  E-value=4.6e-25  Score=215.54  Aligned_cols=213  Identities=15%  Similarity=0.084  Sum_probs=123.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhc-CCCCccccc-cch-hhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCV-GTLEFRSVA-EPV-SRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~-g~~~~~~~~-~~~-~~~~~~~~~~~~v~~~~~  185 (441)
                      ..+|+||||||||++||.+|++.|++|+|||+... + ..+++..+. ..+.+..+. ..+ ........+. ...+...
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-g-G~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   82 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-G-GQMANTEEVENFPGFEMITGPDLSTKMFEHAKKF-GAVYQYG   82 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-T-GGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHT-TCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-C-CeeecccccCCcCCccccchHHHHHHHHHHHhhc-cccccce
Confidence            46899999999999999999999999999998642 2 122221111 111111110 011 1111112222 2333333


Q ss_pred             -EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccc---cccccCHhHHHHHHHHHHHhc
Q 013561          186 -SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKEN---AYFLREVNHAQEIRKKLLLNL  261 (441)
Q Consensus       186 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~---~~~l~~~~~a~~~~~~i~~~~  261 (441)
                       .+...+.....+...+           ..++.||+||||||++|+.|++||.++.   ........+...+.   .+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~-----------~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~---~k~v  148 (312)
T 4gcm_A           83 DIKSVEDKGEYKVINFG-----------NKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFK---NKRL  148 (312)
T ss_dssp             CCCEEEECSSCEEEECS-----------SCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGT---TCEE
T ss_pred             eeeeeeeeecceeeccC-----------CeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccC---CCEE
Confidence             3333343333332222           1478999999999999999999997531   11111111111111   0122


Q ss_pred             ccccCCCCceeEeeC-----ceEEEEccC---------------------------------------------------
Q 013561          262 MLSENPGDTVQLFSK-----YFVITITLS---------------------------------------------------  285 (441)
Q Consensus       262 ~~a~~~G~~~vE~a~-----~v~V~il~~---------------------------------------------------  285 (441)
                      .+.+ +|..++|+|.     ..+|+++..                                                   
T Consensus       149 vViG-gG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (312)
T 4gcm_A          149 FVIG-GGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSE  227 (312)
T ss_dssp             EEEC-CSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEC-CCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCce
Confidence            2333 4555655541     111211100                                                   


Q ss_pred             -----------Cc--------------ccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHH
Q 013561          286 -----------FL--------------VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA  340 (441)
Q Consensus       286 -----------~~--------------~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA  340 (441)
                                 .+              .+-|+|.||++||| |.|+|||+|||+.        ..+++++.|+.||+.||
T Consensus       228 ~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~T-s~pgIyA~GDv~~--------~~~~~~~~A~~~G~~AA  298 (312)
T 4gcm_A          228 ETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTT-SVPGIFAAGDVRD--------KGLRQIVTATGDGSIAA  298 (312)
T ss_dssp             EEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBC-SSTTEEECSTTBS--------CSCCSHHHHHHHHHHHH
T ss_pred             eEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCcc-CCCCEEEEeecCC--------CcchHHHHHHHHHHHHH
Confidence                       00              00088999999999 9999999999982        23578999999999999


Q ss_pred             HHHHHHhc
Q 013561          341 ELFNKKIG  348 (441)
Q Consensus       341 ~nI~~~l~  348 (441)
                      .||.++|+
T Consensus       299 ~~i~~~L~  306 (312)
T 4gcm_A          299 QSAAEYIE  306 (312)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.92  E-value=2.8e-24  Score=218.22  Aligned_cols=242  Identities=19%  Similarity=0.293  Sum_probs=163.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcccc-c-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMVFT-P-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~~~-~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      ++|+|||||+||+++|..|++.|+  +|||||++++..|. + +......+......+.......   +. ..++.++..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~---~~-~~~i~~~~~   77 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKF---FQ-DQAIELISD   77 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHH---HH-HTTEEEECC
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHH---HH-hCCCEEEEE
Confidence            589999999999999999999998  89999999977765 2 3323444443333333333332   22 247788778


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHHh--cc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLN--LM  262 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~--~~  262 (441)
                      +++.++.+.+.+.+.++           .++.||+||+|||++|+.|++||.+ ++++.+++.+++..+...+...  +.
T Consensus        78 ~v~~id~~~~~v~~~~g-----------~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vv  146 (404)
T 3fg2_P           78 RMVSIDREGRKLLLASG-----------TAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVV  146 (404)
T ss_dssp             CEEEEETTTTEEEESSS-----------CEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEE
T ss_pred             EEEEEECCCCEEEECCC-----------CEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEE
Confidence            99999999998877653           3789999999999999999999976 6788889999988887654211  11


Q ss_pred             cccCCCCceeEeeC--------------------------------------ceE-------------------EE----
Q 013561          263 LSENPGDTVQLFSK--------------------------------------YFV-------------------IT----  281 (441)
Q Consensus       263 ~a~~~G~~~vE~a~--------------------------------------~v~-------------------V~----  281 (441)
                      +.+ +|..++|+|.                                      +++                   |.    
T Consensus       147 ViG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG  225 (404)
T 3fg2_P          147 VIG-AGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDG  225 (404)
T ss_dssp             EEC-CSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTS
T ss_pred             EEC-CCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCC
Confidence            111 2222222210                                      000                   10    


Q ss_pred             --------Ec-----cC--------CcccCCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHHH
Q 013561          282 --------IT-----LS--------FLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       282 --------il-----~~--------~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~a  339 (441)
                              ++     +.        +..+ +.|.||+++|| +.|+|||+|||+..+.+ .|.+..+.++..|+.||+.+
T Consensus       226 ~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~Gi~vd~~~~t-~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~a  303 (404)
T 3fg2_P          226 NTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLT-SDPHISAIGDCALFESVRFGETMRVESVQNATDQARCV  303 (404)
T ss_dssp             CEEECSEEEECCCEEECCHHHHHTTCCBS-SSEEECTTSBC-SSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHH
T ss_pred             CEEEcCEEEECcCCccCHHHHHhCCCCCC-CCEEECCCccc-CCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHH
Confidence                    00     00        0001 44999999999 99999999999987642 24334566799999999999


Q ss_pred             HHHHHHHhccccCCCcccccCCCCCCCceeecc-e-eEEEecCC
Q 013561          340 AELFNKKIGEQDGGKALSAKDINLGDPFVYKHL-G-SMATVGRY  381 (441)
Q Consensus       340 A~nI~~~l~~~~~g~~~~~~~~~~~~~f~~~~~-g-~~~~lG~~  381 (441)
                      |+||.        |+.   ..++ ..||.+.+. + .+.++|..
T Consensus       304 a~~i~--------g~~---~~~~-~~p~~~~~~~~~~~~~~G~~  335 (404)
T 3fg2_P          304 AARLT--------GDA---KPYD-GYPWFWSDQGDDKLQIVGLT  335 (404)
T ss_dssp             HHHTT--------TCC---CCCC-CCCEEEEEETTEEEEEEECC
T ss_pred             HHHhC--------CCC---CCCC-CCCceEeEECCcEEEEEeCC
Confidence            99997        321   1123 267766543 2 45666654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.92  E-value=4.8e-25  Score=226.86  Aligned_cols=221  Identities=21%  Similarity=0.219  Sum_probs=141.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++|+|||||+||+++|..|++.  |++|+|||+++++.+.++ ++....+....+.......+   .+.+..++.++.+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~gi~v~~~   79 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPE---VFIKKRGIDLHLN   79 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------C---THHHHTTCEEETT
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHH---HHHHhcCcEEEec
Confidence            57999999999999999999986  899999999998776553 33333332222221111111   1222346777776


Q ss_pred             -EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH----H
Q 013561          186 -SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL----L  259 (441)
Q Consensus       186 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~----~  259 (441)
                       +|+.++.+...+...+          ++.++.||+||||||++|+.|++||.+ ++++..++.+++..+.+.+.    .
T Consensus        80 ~~v~~i~~~~~~v~~~~----------g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~  149 (449)
T 3kd9_A           80 AEVIEVDTGYVRVRENG----------GEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVE  149 (449)
T ss_dssp             CEEEEECSSEEEEECSS----------SEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCC
T ss_pred             CEEEEEecCCCEEEECC----------ceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCC
Confidence             8999987765554321          123789999999999999999999986 56777888888887776542    1


Q ss_pred             hcccccCCCCceeEeeC-----ceEEE-----------------------------------------------------
Q 013561          260 NLMLSENPGDTVQLFSK-----YFVIT-----------------------------------------------------  281 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~-----~v~V~-----------------------------------------------------  281 (441)
                      .+.+.+ +|..++|+|.     ..+|+                                                     
T Consensus       150 ~vvViG-gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g  228 (449)
T 3kd9_A          150 NVVIIG-GGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDA  228 (449)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSCCEEEETT
T ss_pred             eEEEEC-CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCC
Confidence            222222 3444433330     00111                                                     


Q ss_pred             --------Ec-----cC------CcccC---CceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHH
Q 013561          282 --------IT-----LS------FLVRL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKY  338 (441)
Q Consensus       282 --------il-----~~------~~~~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~  338 (441)
                              ++     |.      .+.++   |+|.||+++|| +.|+|||+|||+..++. .|.+..++++..|.+||+.
T Consensus       229 ~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~  307 (449)
T 3kd9_A          229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQT-SVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYV  307 (449)
T ss_dssp             EEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHH
T ss_pred             CEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHH
Confidence                    00     00      00000   78999999999 99999999999976553 3544467899999999999


Q ss_pred             HHHHHH
Q 013561          339 LAELFN  344 (441)
Q Consensus       339 aA~nI~  344 (441)
                      +|+||.
T Consensus       308 aa~~i~  313 (449)
T 3kd9_A          308 AGSNIA  313 (449)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999987

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.91  E-value=7.9e-25  Score=226.64  Aligned_cols=228  Identities=19%  Similarity=0.201  Sum_probs=136.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCCcc-cccc---chhhhhhhhcCCCCEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLEFR-SVAE---PVSRIQTSLSSDPNSY  181 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~~-~~~~---~~~~~~~~~~~~~~v~  181 (441)
                      +++|+|||||++|+++|..|++.  |++|||||+++++.|.++ ++....+..... ....   .+.+..+.+.+..++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            56999999999999999999987  899999999998877643 343343332211 1100   0111112133334666


Q ss_pred             EE-EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH-
Q 013561          182 FY-LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL-  258 (441)
Q Consensus       182 ~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~-  258 (441)
                      +. ..+|+.++.+.+.+.+.+..+      ++...+.||+||||||++|..|++||.+ ++++.+.+..++..+...+. 
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~------g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~  156 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRT------GERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISA  156 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTT------CCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCT
T ss_pred             EEECCEEEEEECCCCEEEEeecCC------CCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhc
Confidence            64 468999999999998876322      1224789999999999999999999985 66777888888877764321 


Q ss_pred             ---HhcccccCCCCceeEee---------------------------------------------------------Cce
Q 013561          259 ---LNLMLSENPGDTVQLFS---------------------------------------------------------KYF  278 (441)
Q Consensus       259 ---~~~~~a~~~G~~~vE~a---------------------------------------------------------~~v  278 (441)
                         ..+.+.+ +|..++|+|                                                         +.+
T Consensus       157 ~~~~~vvViG-gG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v  235 (472)
T 3iwa_A          157 GEVSKAVIVG-GGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKV  235 (472)
T ss_dssp             TSCSEEEEEC-CSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeE
Confidence               0111111 122111111                                                         001


Q ss_pred             EEE------------Ec-----cCC------ccc---CCceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHH
Q 013561          279 VIT------------IT-----LSF------LVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQV  331 (441)
Q Consensus       279 ~V~------------il-----~~~------~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~  331 (441)
                      .+.            ++     +..      +.+   -|+|.||+++|| +.|+|||+|||+.+++.. |.+..+++++.
T Consensus       236 ~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~  314 (472)
T 3iwa_A          236 ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNLVTGKPGFFPLGSM  314 (472)
T ss_dssp             EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBTTTSSEECCCCTTH
T ss_pred             EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCccc-CCCCEEEeccceecccccCCceeecchHHH
Confidence            111            10     000      000   188999999999 999999999999876532 54446789999


Q ss_pred             HHHHHHHHHHHHH
Q 013561          332 AERQGKYLAELFN  344 (441)
Q Consensus       332 A~~qg~~aA~nI~  344 (441)
                      |++||+++|+||.
T Consensus       315 A~~~g~~aa~~i~  327 (472)
T 3iwa_A          315 ANRQGRVIGTNLA  327 (472)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999997

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.91  E-value=8.7e-24  Score=224.70  Aligned_cols=226  Identities=21%  Similarity=0.293  Sum_probs=156.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCCcc--ccccchhhhhhhhcCCCCEE
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLEFR--SVAEPVSRIQTSLSSDPNSY  181 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~v~  181 (441)
                      +++++|+|||||+||+++|..|++.  |++|+|||+++++.|.++ ++....+.....  .+...+...    .+..++.
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~----~~~~gi~  109 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERM----SKRFNLD  109 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHH----HHHTTCE
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHH----HHhcCcE
Confidence            4468999999999999999999987  899999999998887653 455555543321  122223332    2223566


Q ss_pred             EE-EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCc-c-cccccccCHhHHHHHHHHHH
Q 013561          182 FY-LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-K-ENAYFLREVNHAQEIRKKLL  258 (441)
Q Consensus       182 ~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~-~-~~~~~l~~~~~a~~~~~~i~  258 (441)
                      +. ..+|+.++.+.+.+.+.+..+      ++..++.||+||||||++|+.|++||. + ++++..+++.++..+...+.
T Consensus       110 v~~~~~V~~id~~~~~v~v~~~~~------g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~  183 (588)
T 3ics_A          110 IRVLSEVVKINKEEKTITIKNVTT------NETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYID  183 (588)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTT------CCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHH
T ss_pred             EEECCEEEEEECCCCEEEEeecCC------CCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHh
Confidence            64 568999999999998876322      122468999999999999999999998 3 56778888888887766543


Q ss_pred             H----hcccccCCCCceeEeeC-----ceEEE------------------------------------------------
Q 013561          259 L----NLMLSENPGDTVQLFSK-----YFVIT------------------------------------------------  281 (441)
Q Consensus       259 ~----~~~~a~~~G~~~vE~a~-----~v~V~------------------------------------------------  281 (441)
                      .    .+.+.+ +|..++|+|.     ..+|+                                                
T Consensus       184 ~~~~~~vvViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~  262 (588)
T 3ics_A          184 EKKPRHATVIG-GGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVR  262 (588)
T ss_dssp             HHCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEE
T ss_pred             hcCCCeEEEEC-CCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEE
Confidence            1    122222 3444433330     00111                                                


Q ss_pred             ------------Ec-----cC------CcccC---CceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHH
Q 013561          282 ------------IT-----LS------FLVRL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAER  334 (441)
Q Consensus       282 ------------il-----~~------~~~~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~  334 (441)
                                  ++     +.      .+.++   |+|.||+++|| +.|+|||+|||+.+++. +|.+..++++..|..
T Consensus       263 ~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  341 (588)
T 3ics_A          263 LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDFVTETETMIPLAWPANR  341 (588)
T ss_dssp             ETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHH
T ss_pred             ECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCcccc-CCCCEEEeeeeeecccccCCcccccccHHHHHH
Confidence                        00     00      00000   78999999999 99999999999976543 254446789999999


Q ss_pred             HHHHHHHHHH
Q 013561          335 QGKYLAELFN  344 (441)
Q Consensus       335 qg~~aA~nI~  344 (441)
                      ||+++|+||.
T Consensus       342 ~g~~aa~~i~  351 (588)
T 3ics_A          342 QGRMLADIIH  351 (588)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999997

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.91  E-value=1.7e-23  Score=217.17  Aligned_cols=225  Identities=18%  Similarity=0.262  Sum_probs=150.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCC-ccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLE-FRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++|+|||||+||+++|..|++.  |++|+|||+++...|.++ ++....+... .+.+.....+.   +.+..++.++.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~gv~~~~  112 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKT---FRDKYGIDAKV  112 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHH---HHHTTCCEEES
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHH---HHhhcCCEEEe
Confidence            46899999999999999999985  899999999988766654 4444333322 22222222222   32334677766


Q ss_pred             -EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH----
Q 013561          185 -ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL----  258 (441)
Q Consensus       185 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~----  258 (441)
                       ..|+.++.+.+.+.+.+..+      ++..++.||+||||||+.|+.|++||.+ ++++.+++.+++.++.+.+.    
T Consensus       113 ~~~v~~i~~~~~~v~v~~~~~------g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~  186 (480)
T 3cgb_A          113 RHEVTKVDTEKKIVYAEHTKT------KDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKV  186 (480)
T ss_dssp             SEEEEEEETTTTEEEEEETTT------CCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEEECCCCEEEEEEcCC------CceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCC
Confidence             58899999889888875211      1123689999999999999999999986 56777888898887776542    


Q ss_pred             HhcccccCCCCceeEee------------------------------------------------------Cce-EEE--
Q 013561          259 LNLMLSENPGDTVQLFS------------------------------------------------------KYF-VIT--  281 (441)
Q Consensus       259 ~~~~~a~~~G~~~vE~a------------------------------------------------------~~v-~V~--  281 (441)
                      ..+.+.+ +|..++|+|                                                      +.+ .+.  
T Consensus       187 ~~vvViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~  265 (480)
T 3cgb_A          187 EDVTIIG-GGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD  265 (480)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC
Confidence            1111111 122221111                                                      001 010  


Q ss_pred             ---------E-----------ccCCcccC---CceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHH
Q 013561          282 ---------I-----------TLSFLVRL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGK  337 (441)
Q Consensus       282 ---------i-----------l~~~~~~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~  337 (441)
                               +           +...+.++   |+|.||+++|| +.|+|||+|||+..++. .|++..++++..|.+||+
T Consensus       266 ~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~  344 (480)
T 3cgb_A          266 KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGR  344 (480)
T ss_dssp             TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHH
T ss_pred             CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccC-CCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHH
Confidence                     1           01111111   78999999999 89999999999976542 243334678999999999


Q ss_pred             HHHHHHH
Q 013561          338 YLAELFN  344 (441)
Q Consensus       338 ~aA~nI~  344 (441)
                      ++|+||.
T Consensus       345 ~aa~~i~  351 (480)
T 3cgb_A          345 LAGLNML  351 (480)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999997

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.91  E-value=1.5e-23  Score=221.67  Aligned_cols=223  Identities=18%  Similarity=0.234  Sum_probs=153.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCCc-cc-cccchhhhhhhhcCCCCEEEE-
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLEF-RS-VAEPVSRIQTSLSSDPNSYFY-  183 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~v~~~-  183 (441)
                      ++|+|||||+||+++|..|++.  +++|||||+++++.|.++ ++....+.... .. .......    +.+..++.+. 
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~   77 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPES----FKARFNVEVRV   77 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHH----HHHHHCCEEET
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHH----HHHhcCcEEEE
Confidence            5899999999999999999986  899999999998877653 44444443322 11 1122222    2222356664 


Q ss_pred             EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH---
Q 013561          184 LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL---  259 (441)
Q Consensus       184 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~---  259 (441)
                      ..+|++++.+.+.+.+.+..+      ++..++.||+||||||++|+.|++||.+ .+++.++++.++..+.+.+..   
T Consensus        78 ~~~V~~id~~~~~v~~~~~~~------g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~  151 (565)
T 3ntd_A           78 KHEVVAIDRAAKLVTVRRLLD------GSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNV  151 (565)
T ss_dssp             TEEEEEEETTTTEEEEEETTT------CCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCEEEEEecCC------CCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCC
Confidence            578999999999998876322      1224789999999999999999999985 677788888888777654421   


Q ss_pred             -hcccccCCCCceeEeeC-------------------------------------ceE----------------------
Q 013561          260 -NLMLSENPGDTVQLFSK-------------------------------------YFV----------------------  279 (441)
Q Consensus       260 -~~~~a~~~G~~~vE~a~-------------------------------------~v~----------------------  279 (441)
                       .+.+.+ +|..++|+|.                                     +++                      
T Consensus       152 ~~vvViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~  230 (565)
T 3ntd_A          152 EHATVVG-GGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDA  230 (565)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGG
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccc
Confidence             122222 3333333220                                     000                      


Q ss_pred             ---------------EE-----------Ec------cCC------ccc---CCceeeCCCcccCCCCCEEEecccccccc
Q 013561          280 ---------------IT-----------IT------LSF------LVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLE  318 (441)
Q Consensus       280 ---------------V~-----------il------~~~------~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~  318 (441)
                                     ++           ++      +..      +..   -|+|.||+++|| +.|+|||+|||+.+++
T Consensus       231 ~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  309 (565)
T 3ntd_A          231 AGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQD  309 (565)
T ss_dssp             GTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBC-SSTTEEECGGGBCEEB
T ss_pred             cccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCccc-CCCCEEEeeeeEeecc
Confidence                           10           00      000      000   078999999999 9999999999997765


Q ss_pred             c-CCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          319 Q-TGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       319 ~-~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      . .|....+++++.|++||+++|+||.
T Consensus       310 ~~~g~~~~~~~~~~A~~~g~~aa~~i~  336 (565)
T 3ntd_A          310 FVTGQACLVPLAGPANRQGRMAADNMF  336 (565)
T ss_dssp             TTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCceeecccHHHHHHHHHHHHHHhc
Confidence            3 3544467899999999999999997

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.90  E-value=2.4e-23  Score=211.69  Aligned_cols=214  Identities=21%  Similarity=0.266  Sum_probs=145.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcccc-cch-hhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMVFT-PLL-ASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~~~-~ll-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++|+|||||++|+++|..|++.|+  +|+|||+++++.|. +.+ .....+.. .+..  .++ .   + +..+++++.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~---~-~~~~v~~~~   78 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-AEKI--RLD-C---K-RAPEVEWLL   78 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC-GGGS--BCC-C---T-TSCSCEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc-hhhh--hHH-H---H-HHCCCEEEc
Confidence            5689999999999999999999887  59999999877664 222 22332222 1111  111 1   2 235788888


Q ss_pred             EE-EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC-CCcccccccccCHhHHHHHHHHHH--Hh
Q 013561          185 AS-CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI-KGVKENAYFLREVNHAQEIRKKLL--LN  260 (441)
Q Consensus       185 ~~-v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i-pG~~~~~~~l~~~~~a~~~~~~i~--~~  260 (441)
                      +. |+.++.+.+.|.+.++           .++.||+||+|||++|+.|++ ||.+++++.+++.+++.++++.+.  ..
T Consensus        79 ~~~v~~i~~~~~~v~~~~g-----------~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~  147 (408)
T 2gqw_A           79 GVTAQSFDPQAHTVALSDG-----------RTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSR  147 (408)
T ss_dssp             TCCEEEEETTTTEEEETTS-----------CEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCE
T ss_pred             CCEEEEEECCCCEEEECCC-----------CEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCe
Confidence            74 9999998888876542           378999999999999999999 998767778889999887765421  11


Q ss_pred             cccccCCCCceeEeeC-----ceEEE------------------------------------------------------
Q 013561          261 LMLSENPGDTVQLFSK-----YFVIT------------------------------------------------------  281 (441)
Q Consensus       261 ~~~a~~~G~~~vE~a~-----~v~V~------------------------------------------------------  281 (441)
                      +.+.+ +|..|+|+|.     +.+|+                                                      
T Consensus       148 vvViG-gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i  226 (408)
T 2gqw_A          148 LLIVG-GGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRI  226 (408)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEETTSCEE
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEE
Confidence            22222 3333333320     00111                                                      


Q ss_pred             -----Ec-----cC--------CcccCCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHHHHHH
Q 013561          282 -----IT-----LS--------FLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAEL  342 (441)
Q Consensus       282 -----il-----~~--------~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~aA~n  342 (441)
                           ++     +.        +..+ +.|.||+++|| +.|+|||+|||+..+.+ .|....++++..|++||+.+|+|
T Consensus       227 ~~D~vi~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  304 (408)
T 2gqw_A          227 AADMVVVGIGVLANDALARAAGLACD-DGIFVDAYGRT-TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH  304 (408)
T ss_dssp             ECSEEEECSCEEECCHHHHHHTCCBS-SSEECCTTCBC-SSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHH
T ss_pred             EcCEEEECcCCCccHHHHHhCCCCCC-CCEEECCCCcc-CCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHH
Confidence                 00     00        0000 34999999999 99999999999976532 13322356899999999999999


Q ss_pred             HH
Q 013561          343 FN  344 (441)
Q Consensus       343 I~  344 (441)
                      |.
T Consensus       305 i~  306 (408)
T 2gqw_A          305 LV  306 (408)
T ss_dssp             HH
T ss_pred             hc
Confidence            98

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.90  E-value=6.8e-24  Score=206.80  Aligned_cols=220  Identities=17%  Similarity=0.043  Sum_probs=127.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc--ccchhhhh-----cCCCCccccccchhhhhhhhcCCCCEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF--TPLLASTC-----VGTLEFRSVAEPVSRIQTSLSSDPNSY  181 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~--~~ll~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~v~  181 (441)
                      .++|+||||||||++||.+|++.|++|+|||+......  .++++...     .+..+.-.-.....+... ..+..+..
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~-~~~~~~~~   82 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRT-QSEKYGTT   82 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHH-HHHHTTCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHH-HHhhcCcE
Confidence            56899999999999999999999999999998763221  12221110     011110000000111111 12224556


Q ss_pred             EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccc-cccccCHhHHHHHHHHH-HH
Q 013561          182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKEN-AYFLREVNHAQEIRKKL-LL  259 (441)
Q Consensus       182 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~-~~~l~~~~~a~~~~~~i-~~  259 (441)
                      +....+..+....+.......+         ..++.||+||||||++|+.|++||.+.. ...+............. ..
T Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 4a5l_A           83 IITETIDHVDFSTQPFKLFTEE---------GKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNK  153 (314)
T ss_dssp             EECCCEEEEECSSSSEEEEETT---------CCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTS
T ss_pred             EEEeEEEEeecCCCceEEEECC---------CeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCC
Confidence            6666677776665544443321         2478999999999999999999997521 11222222111111000 01


Q ss_pred             hcccccCCCCceeEeeC-----ceEEE-----------------------------------------------------
Q 013561          260 NLMLSENPGDTVQLFSK-----YFVIT-----------------------------------------------------  281 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~-----~v~V~-----------------------------------------------------  281 (441)
                      .+.+.+ +|..++|+|.     ..+|+                                                     
T Consensus       154 ~vvViG-gG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  232 (314)
T 4a5l_A          154 VLMVVG-GGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSG  232 (314)
T ss_dssp             EEEEEC-SSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTC
T ss_pred             eEEEEC-CChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccc
Confidence            122222 3445544430     01111                                                     


Q ss_pred             ---------Ec------cCC---cccC----CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          282 ---------IT------LSF---LVRL----SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       282 ---------il------~~~---~~~l----G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                               ++      |..   ...+    +.+.||+++|| |.|+|||+|||+..        ..+++..|+.||+.|
T Consensus       233 ~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~T-s~pgIyA~GDv~~~--------~~~~~~~A~~~G~~A  303 (314)
T 4a5l_A          233 EYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKT-SVDGVFACGDVCDR--------VYRQAIVAAGSGCMA  303 (314)
T ss_dssp             CEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBC-SSTTEEECSTTTCS--------SCCCHHHHHHHHHHH
T ss_pred             cceeeccccceEecccccChhHhcccceEcCCeeEeCCCCcc-CCCCEEEEEeccCC--------cchHHHHHHHHHHHH
Confidence                     00      000   0000    33558999999 99999999999932        235789999999999


Q ss_pred             HHHHHHHhc
Q 013561          340 AELFNKKIG  348 (441)
Q Consensus       340 A~nI~~~l~  348 (441)
                      |.++.++|+
T Consensus       304 A~~~~~yL~  312 (314)
T 4a5l_A          304 ALSCEKWLQ  312 (314)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999985

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.89  E-value=3.9e-23  Score=212.76  Aligned_cols=223  Identities=20%  Similarity=0.249  Sum_probs=148.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCC---CccccccchhhhhhhhcCCCCEEEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTL---EFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      ++|+|||||++|+++|..|++.  |++|+|||+++++.|.++ ++....+..   +.+.+.......   +. ..++.++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~-~~gv~~~   76 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEE---LS-NLGANVQ   76 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHH---HH-HTTCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHH---HH-HcCCEEE
Confidence            3799999999999999999987  999999999987766554 333333432   233333333332   22 2466764


Q ss_pred             E-EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH--
Q 013561          184 L-ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL--  259 (441)
Q Consensus       184 ~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~--  259 (441)
                      . ..+..++.+.+.+.+.+..+      ++..++.||+||||||++|+.|++||.+ ++++.++++.++.++.+....  
T Consensus        77 ~~~~v~~i~~~~~~v~v~~~~~------g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (452)
T 2cdu_A           77 MRHQVTNVDPETKTIKVKDLIT------NEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAK  150 (452)
T ss_dssp             ESEEEEEEEGGGTEEEEEETTT------CCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCS
T ss_pred             eCCEEEEEEcCCCEEEEEecCC------CceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCC
Confidence            4 46999998888888875321      1124789999999999999999999986 567788888888877654311  


Q ss_pred             hcccccCCCCceeEee-------------------------------------------------------Cc-eE-EE-
Q 013561          260 NLMLSENPGDTVQLFS-------------------------------------------------------KY-FV-IT-  281 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a-------------------------------------------------------~~-v~-V~-  281 (441)
                      .+.+.+ +|..++|+|                                                       +. +. +. 
T Consensus       151 ~vvViG-gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~  229 (452)
T 2cdu_A          151 TITIIG-SGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL  229 (452)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET
T ss_pred             eEEEEC-cCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe
Confidence            111111 222222221                                                       00 10 10 


Q ss_pred             ----------Ec-----cCC---c--cc---CCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHH
Q 013561          282 ----------IT-----LSF---L--VR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGK  337 (441)
Q Consensus       282 ----------il-----~~~---~--~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~  337 (441)
                                ++     |..   .  ..   -|+|.||++||| +.|+|||+|||+..++. .|++..++++..|++||+
T Consensus       230 ~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  308 (452)
T 2cdu_A          230 DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGR  308 (452)
T ss_dssp             TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHH
T ss_pred             CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCc-CCCCEEEcceEEEeccccCCCeeecchHHHHHHHHH
Confidence                      00     000   0  01   178999999999 99999999999976432 233234689999999999


Q ss_pred             HHHHHHH
Q 013561          338 YLAELFN  344 (441)
Q Consensus       338 ~aA~nI~  344 (441)
                      ++|+||.
T Consensus       309 ~aa~~i~  315 (452)
T 2cdu_A          309 LVGLNLT  315 (452)
T ss_dssp             HHHHTSS
T ss_pred             HHHHHhC
Confidence            9999996

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.89  E-value=1.1e-23  Score=205.33  Aligned_cols=217  Identities=15%  Similarity=0.154  Sum_probs=125.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccc-cch-hhhhhhhcCCCCEEEEE
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVA-EPV-SRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~v~~~~  184 (441)
                      |+..+|+||||||||++||.+|++.|++|+|||+...-+  .+. ....+......+. ..+ ....+.+.+...+.+..
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRN--RVT-QNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYE   80 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGG--GGS-SCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEE
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC--eee-eecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEe
Confidence            335689999999999999999999999999999875321  111 0001111111110 011 11122234556778887


Q ss_pred             EEEEEEeCC-CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc----ccccccCHhHHHHHHHHHHH
Q 013561          185 ASCIGIDTD-KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE----NAYFLREVNHAQEIRKKLLL  259 (441)
Q Consensus       185 ~~v~~id~~-~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~----~~~~l~~~~~a~~~~~~i~~  259 (441)
                      ..+..++.. .....+...+         ..++.||+||||||++|+.|++||.++    .++... ..+...++..   
T Consensus        81 ~~~~~~~~~~~~~~~v~~~~---------g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~-~~~~~~~~~~---  147 (304)
T 4fk1_A           81 KTVVMITKQSTGLFEIVTKD---------HTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCP-YCDGWELKDQ---  147 (304)
T ss_dssp             CCEEEEEECTTSCEEEEETT---------CCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCH-HHHSGGGTTS---
T ss_pred             eEEEEeeecCCCcEEEEECC---------CCEEEeCEEEEccCCccccccccCccccccceeeecc-ccchhHhcCC---
Confidence            777766543 3333333321         137899999999999999999999752    111111 0010000000   


Q ss_pred             hcccccCCCC-------------------------------------------------------ceeEeeCceEEE---
Q 013561          260 NLMLSENPGD-------------------------------------------------------TVQLFSKYFVIT---  281 (441)
Q Consensus       260 ~~~~a~~~G~-------------------------------------------------------~~vE~a~~v~V~---  281 (441)
                      .+.+.+.++.                                                       ..+++.+..++.   
T Consensus       148 ~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~  227 (304)
T 4fk1_A          148 PLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAG  227 (304)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHHHTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCE
T ss_pred             ceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhhhccceeEeeeeEEEeecCCCeeeeeeccccceeeecc
Confidence            0000000000                                                       111111111111   


Q ss_pred             -Ecc-----------CCcccC---CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013561          282 -ITL-----------SFLVRL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKK  346 (441)
Q Consensus       282 -il~-----------~~~~~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~  346 (441)
                       ++.           ..+.++   |+|.||+++|| |.|+|||+|||+..        .+.++..|+.||+.||.+|.++
T Consensus       228 ~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~--------~~~~~~~A~~~G~~AA~~i~~~  298 (304)
T 4fk1_A          228 GFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT-SEKNIYLAGETTTQ--------GPSSLIIAASQGNKAAIAINSD  298 (304)
T ss_dssp             EEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBC-SSTTEEECSHHHHT--------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeccccCChhhhhcCeEECCCCCEEECcCCcc-CCCCEEEEeccCCC--------cchHHHHHHHHHHHHHHHHHHH
Confidence             110           011111   88999999999 99999999999932        3567899999999999999999


Q ss_pred             hc
Q 013561          347 IG  348 (441)
Q Consensus       347 l~  348 (441)
                      |.
T Consensus       299 L~  300 (304)
T 4fk1_A          299 IT  300 (304)
T ss_dssp             HH
T ss_pred             Hh
Confidence            96

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.89  E-value=1.4e-22  Score=208.30  Aligned_cols=223  Identities=22%  Similarity=0.292  Sum_probs=148.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCC-CccccccchhhhhhhhcCCCCEEE-EE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTL-EFRSVAEPVSRIQTSLSSDPNSYF-YL  184 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~v~~-~~  184 (441)
                      ++|+|||||+||+++|..|++.  |++|+|||+++.+.|.++ ++....+.. ..+.+.......   +.+ .++.+ ..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~gv~~~~~   76 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEK---MES-RGVNVFSN   76 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHH---HHH-TTCEEEET
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHH---HHH-CCCEEEEC
Confidence            3799999999999999999986  899999999998776654 333333332 233333333332   222 36676 45


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH----H
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL----L  259 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~----~  259 (441)
                      ..+..++.+.+.|.+.+..+      ++..++.||+||||||+.|+.|++||.+ ++++.+++.+++.++.+.+.    .
T Consensus        77 ~~v~~i~~~~~~v~~~~~~~------g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~  150 (447)
T 1nhp_A           77 TEITAIQPKEHQVTVKDLVS------GEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVN  150 (447)
T ss_dssp             EEEEEEETTTTEEEEEETTT------CCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCC
T ss_pred             CEEEEEeCCCCEEEEEecCC------CceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCC
Confidence            57889999999988876211      1123589999999999999999999986 56777888888887766542    1


Q ss_pred             hcccccCCCCceeEee-------------------------------------------------------Cce-EEE--
Q 013561          260 NLMLSENPGDTVQLFS-------------------------------------------------------KYF-VIT--  281 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a-------------------------------------------------------~~v-~V~--  281 (441)
                      .+.+.+ +|..|+|+|                                                       +.+ .+.  
T Consensus       151 ~vvIiG-~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~  229 (447)
T 1nhp_A          151 NVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTD  229 (447)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEES
T ss_pred             eEEEEC-CCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEEC
Confidence            111112 222222221                                                       000 010  


Q ss_pred             ---------Ec-----cCC---c--cc---CCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHH
Q 013561          282 ---------IT-----LSF---L--VR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKY  338 (441)
Q Consensus       282 ---------il-----~~~---~--~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~  338 (441)
                               ++     +..   .  .+   -|+|.||+++|| +.|+|||+|||+..+.. .|+...++++..|++||+.
T Consensus       230 ~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~  308 (447)
T 1nhp_A          230 KNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF  308 (447)
T ss_dssp             SCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHH
T ss_pred             CCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccC-CCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHH
Confidence                     00     000   0  01   177999999999 99999999999975432 1332356799999999999


Q ss_pred             HHHHHH
Q 013561          339 LAELFN  344 (441)
Q Consensus       339 aA~nI~  344 (441)
                      +|+||.
T Consensus       309 aa~~i~  314 (447)
T 1nhp_A          309 AVKNLE  314 (447)
T ss_dssp             HHHTSS
T ss_pred             HHHhhc
Confidence            999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.89  E-value=6.4e-23  Score=206.70  Aligned_cols=212  Identities=20%  Similarity=0.296  Sum_probs=138.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccc-cchhhhhcCCCCcccccc-chhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAE-PVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~-~ll~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++|+|||||+||+++|..|++.|  ++|+|||+++...|. ++++....+......+.. ....    +.+..++.++.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~   79 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGA----MAEQLNARILT   79 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHH----HHHHTTCEEEC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHH----HHHhCCcEEEe
Confidence            468999999999999999999988  579999998755443 334333222111111111 1122    22234677775


Q ss_pred             -EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH--Hh
Q 013561          185 -ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL--LN  260 (441)
Q Consensus       185 -~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~--~~  260 (441)
                       ..+..++.+.+.+.+.+            .++.||+||+|||+.|+.|++||.+ ++++..+++.++..++..+.  ..
T Consensus        80 ~~~v~~i~~~~~~v~~~~------------~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  147 (384)
T 2v3a_A           80 HTRVTGIDPGHQRIWIGE------------EEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRR  147 (384)
T ss_dssp             SCCCCEEEGGGTEEEETT------------EEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEECCCCEEEECC------------cEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCe
Confidence             46888988777776532            2689999999999999999999976 67888889988877766542  11


Q ss_pred             cccccCCCCceeEeeC--------------------------------------c------------------eEEE---
Q 013561          261 LMLSENPGDTVQLFSK--------------------------------------Y------------------FVIT---  281 (441)
Q Consensus       261 ~~~a~~~G~~~vE~a~--------------------------------------~------------------v~V~---  281 (441)
                      +.+.+ +|..++|+|.                                      +                  +.|+   
T Consensus       148 v~ViG-gG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  226 (384)
T 2v3a_A          148 VLLLG-AGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSD  226 (384)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETT
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECC
Confidence            22222 2333322220                                      0                  0010   


Q ss_pred             ---------Ec-----cC------Cc--ccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          282 ---------IT-----LS------FL--VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       282 ---------il-----~~------~~--~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                               ++     +.      .+  .+-| |.||+++|| +.|+|||+|||+...   +  ...+.+..|..||+.+
T Consensus       227 g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t-~~~~IyA~GD~~~~~---~--~~~~~~~~a~~~g~~~  299 (384)
T 2v3a_A          227 GEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRT-SHANIYALGDCAEVD---G--LNLLYVMPLMACARAL  299 (384)
T ss_dssp             SCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBC-SSTTEEECGGGEEET---T--BCCCSHHHHHHHHHHH
T ss_pred             CCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCC-CCCCEEEeeeeeeEC---C--CCcchHHHHHHHHHHH
Confidence                     00     00      00  0006 999999999 999999999999652   1  1234677899999999


Q ss_pred             HHHHH
Q 013561          340 AELFN  344 (441)
Q Consensus       340 A~nI~  344 (441)
                      |+||.
T Consensus       300 a~~i~  304 (384)
T 2v3a_A          300 AQTLA  304 (384)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99997

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.89  E-value=3.8e-23  Score=212.89  Aligned_cols=221  Identities=19%  Similarity=0.245  Sum_probs=136.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCC-CccccccchhhhhhhhcCCCCEEEE-E
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTL-EFRSVAEPVSRIQTSLSSDPNSYFY-L  184 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~v~~~-~  184 (441)
                      ++|+|||||+||+++|..|++.  |++|+|||+++++.|.+. ++....+.. ..+.+.......   +. ..++.+. .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~gi~~~~~   78 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEE---LR-RQKIQLLLN   78 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHH---HH-HTTEEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHH---HH-HCCCEEEEC
Confidence            5899999999999999999987  899999999998876553 222222222 122222222222   22 2356664 5


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHHH--hc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLLL--NL  261 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~--~~  261 (441)
                      .+|++++.+.+.+.+....        +..++.||+||||||++|..|++||.+ ++++..+++.++..+......  .+
T Consensus        79 ~~V~~id~~~~~v~v~~~~--------~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v  150 (452)
T 3oc4_A           79 REVVAMDVENQLIAWTRKE--------EQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTV  150 (452)
T ss_dssp             CEEEEEETTTTEEEEEETT--------EEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEE
T ss_pred             CEEEEEECCCCEEEEEecC--------ceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEE
Confidence            6899999999998875211        124789999999999999999999986 556666666555443332211  11


Q ss_pred             ccccCCCCceeEee--------------------------------------------------------CceEEE----
Q 013561          262 MLSENPGDTVQLFS--------------------------------------------------------KYFVIT----  281 (441)
Q Consensus       262 ~~a~~~G~~~vE~a--------------------------------------------------------~~v~V~----  281 (441)
                      .+.+ +|..++|+|                                                        +.+.|.    
T Consensus       151 vViG-gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g  229 (452)
T 3oc4_A          151 AVIG-AGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ  229 (452)
T ss_dssp             EEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC
T ss_pred             EEEC-CCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC
Confidence            1111 122222111                                                        001111    


Q ss_pred             -------Ec-----cC---Ccc--cC---CceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHHHH
Q 013561          282 -------IT-----LS---FLV--RL---SQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLA  340 (441)
Q Consensus       282 -------il-----~~---~~~--~l---G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~aA  340 (441)
                             ++     |.   +..  .+   |+|.||+++|| +.|+|||+|||+..++. .|+...++++..|..||+.+|
T Consensus       230 ~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa  308 (452)
T 3oc4_A          230 EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVA  308 (452)
T ss_dssp             EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHT
T ss_pred             EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccC-CCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHH
Confidence                   11     00   000  01   78999999999 99999999999965421 233334679999999999999


Q ss_pred             HHHH
Q 013561          341 ELFN  344 (441)
Q Consensus       341 ~nI~  344 (441)
                      +||.
T Consensus       309 ~~i~  312 (452)
T 3oc4_A          309 NNLE  312 (452)
T ss_dssp             TSSS
T ss_pred             HHhc
Confidence            9986

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.88  E-value=1.3e-22  Score=207.73  Aligned_cols=219  Identities=20%  Similarity=0.266  Sum_probs=143.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcccc-c-chhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMVFT-P-LLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~~~-~-ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++|+|||||+||+++|..|++.|+  +|+|||+++.+.|. + +......+....+.+.....+.   +. ..+++++.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~-~~gv~~~~   79 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDA---YA-AQNIQLLG   79 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHH---HH-HTTEEEEC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHH---HH-hCCCEEEe
Confidence            5799999999999999999999988  79999999876654 2 2222222322222222222222   22 34788877


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cc---cccccCHhHHHHHHHHHH-
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-EN---AYFLREVNHAQEIRKKLL-  258 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~---~~~l~~~~~a~~~~~~i~-  258 (441)
                      + .|+.++.+.+.|.+.++           .++.||+||+|||++|+.|++||.+ ++   ++.+++.+++.++.+.+. 
T Consensus        80 ~~~v~~i~~~~~~v~~~~g-----------~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~  148 (431)
T 1q1r_A           80 GTQVTAINRDRQQVILSDG-----------RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIA  148 (431)
T ss_dssp             SCCEEEEETTTTEEEETTS-----------CEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred             CCEEEEEECCCCEEEECCC-----------CEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence            5 68999998888776432           3789999999999999999999975 44   777889998887765431 


Q ss_pred             -HhcccccCCCCceeEee-----------------------------------------------------C-----ce-
Q 013561          259 -LNLMLSENPGDTVQLFS-----------------------------------------------------K-----YF-  278 (441)
Q Consensus       259 -~~~~~a~~~G~~~vE~a-----------------------------------------------------~-----~v-  278 (441)
                       ..+.+.+ +|..++|+|                                                     .     .+ 
T Consensus       149 ~~~vvViG-gG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~  227 (431)
T 1q1r_A          149 DNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVT  227 (431)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEE
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEE
Confidence             1111111 222222221                                                     0     00 


Q ss_pred             EEE-----------Ec------cC------CcccC-CceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHHHH
Q 013561          279 VIT-----------IT------LS------FLVRL-SQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQVAE  333 (441)
Q Consensus       279 ~V~-----------il------~~------~~~~l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~  333 (441)
                      .|.           ++      +.      .+..+ +.|.||+++|| +.|+|||+|||+..+.+. |.+....++..|+
T Consensus       228 ~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~gi~Vd~~~~t-s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  306 (431)
T 1q1r_A          228 AVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNAL  306 (431)
T ss_dssp             EEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSSEECCTTSBC-SSTTEEECGGGEEEEETTTTEEEECCSHHHHH
T ss_pred             EEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCCCEEECCCccc-CCCCEEEEEeEEEEccccCCceEeeCHHHHHH
Confidence            011           00      00      00000 44999999999 999999999999765421 3222345789999


Q ss_pred             HHHHHHHHHHH
Q 013561          334 RQGKYLAELFN  344 (441)
Q Consensus       334 ~qg~~aA~nI~  344 (441)
                      .||+.+|.||.
T Consensus       307 ~qg~~aa~~i~  317 (431)
T 1q1r_A          307 EQARKIAAILC  317 (431)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999997

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.87  E-value=2.3e-22  Score=193.80  Aligned_cols=213  Identities=12%  Similarity=0.105  Sum_probs=130.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc-chhhhhcC-CCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP-LLASTCVG-TLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~-ll~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      +++|+|||||++|+++|..|++.|++|+|||+++.....+ ..+..... .....++   ...+.+.+.+..++.++.++
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~   78 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEI---IAEARRQIERYPTIHWVEGR   78 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHH---HHHHHHHHTTCTTEEEEESC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHH---HHHHHHHHHhcCCeEEEEeE
Confidence            4689999999999999999999999999999876332111 11111110 1111111   12222224444578898899


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc----ccccccCHhHHHHHHHHHHHhcc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE----NAYFLREVNHAQEIRKKLLLNLM  262 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~----~~~~l~~~~~a~~~~~~i~~~~~  262 (441)
                      |+.++.+.+.+.+...+.         .++.||+||+|||+.|+.|++||.++    .++... ..+...+..   ..+.
T Consensus        79 v~~i~~~~~~~~v~~~~g---------~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~---~~v~  145 (297)
T 3fbs_A           79 VTDAKGSFGEFIVEIDGG---------RRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCP-YCHGYELDQ---GKIG  145 (297)
T ss_dssp             EEEEEEETTEEEEEETTS---------CEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCH-HHHTGGGTT---CEEE
T ss_pred             EEEEEEcCCeEEEEECCC---------CEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcc-cCcchhhcC---CEEE
Confidence            999998776665554321         36899999999999999999999753    111111 111000000   0011


Q ss_pred             cccCCCCceeEee---------------------------------------------------CceEEE----Ec----
Q 013561          263 LSENPGDTVQLFS---------------------------------------------------KYFVIT----IT----  283 (441)
Q Consensus       263 ~a~~~G~~~vE~a---------------------------------------------------~~v~V~----il----  283 (441)
                      +.+ +|..++|+|                                                   +...+.    ++    
T Consensus       146 vvG-~G~~~~e~a~~l~~~g~v~~v~~~~~~~~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~  224 (297)
T 3fbs_A          146 VIA-ASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKL  224 (297)
T ss_dssp             EEC-CSTTHHHHHHHGGGTSEEEEECTTTCCCCHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEE
T ss_pred             EEe-cCccHHHHHHHhhhcCcEEEEECCCCCCCHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCc
Confidence            111 122221111                                                   110110    11    


Q ss_pred             -cCC------cc-----cCC-ceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          284 -LSF------LV-----RLS-QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       284 -~~~------~~-----~lG-~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                       +..      +.     ..| +|.||+++|| +.|+|||+|||+.         .|+++..|+.||+.+|.||.+.|.
T Consensus       225 ~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~---------~~~~~~~A~~~g~~aa~~i~~~l~  292 (297)
T 3fbs_A          225 RITVDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVAR---------PAGSVALAVGDGAMAGAAAHRSIL  292 (297)
T ss_dssp             ECCCSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGC---------TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCC---------chHHHHHHHHhHHHHHHHHHHHHh
Confidence             100      00     014 7999999999 9999999999992         378999999999999999999996

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.87  E-value=3.5e-22  Score=207.99  Aligned_cols=223  Identities=15%  Similarity=0.183  Sum_probs=139.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hh-hhhcCCCC-------------cc-cc-ccch
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LA-STCVGTLE-------------FR-SV-AEPV  167 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~-~~~~g~~~-------------~~-~~-~~~~  167 (441)
                      +..++|||||||+||+++|..|++.  |++|+|||+++++.|... +. ....+...             .+ .+ ..+.
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   88 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence            3457899999999999999998765  899999999987765422 11 11111100             00 00 0000


Q ss_pred             hhhh--hhhc--CCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCc-----
Q 013561          168 SRIQ--TSLS--SDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGV-----  237 (441)
Q Consensus       168 ~~~~--~~~~--~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~-----  237 (441)
                      ....  ..+.  ...++.++.+ .|+.||.+.+.|.+.++           .++.||+||||||++|+.++++|.     
T Consensus        89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g-----------~~i~yd~lviATGs~p~~~~~~~~~~~~~  157 (493)
T 1m6i_A           89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG-----------SQITYEKCLIATGGTPRSLSAIDRAGAEV  157 (493)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS-----------CEEEEEEEEECCCEEECCCHHHHTSCHHH
T ss_pred             HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCC-----------CEEECCEEEECCCCCCCCCCCcccccccc
Confidence            0000  0011  1357888886 89999998888877542           378999999999999988766552     


Q ss_pred             ccccccccCHhHHHHHHHHHHH--hcccccCCCCceeEeeC---------ceEEE-------------------------
Q 013561          238 KENAYFLREVNHAQEIRKKLLL--NLMLSENPGDTVQLFSK---------YFVIT-------------------------  281 (441)
Q Consensus       238 ~~~~~~l~~~~~a~~~~~~i~~--~~~~a~~~G~~~vE~a~---------~v~V~-------------------------  281 (441)
                      .++++.+++++++..+...+..  .+.+.+ +|..|+|+|.         +++|+                         
T Consensus       158 ~~~v~~~~~~~d~~~l~~~~~~~~~vvViG-gG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l  236 (493)
T 1m6i_A          158 KSRTTLFRKIGDFRSLEKISREVKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV  236 (493)
T ss_dssp             HHTEEECCSHHHHHHHHHHHHHCSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             cCceEEEcCHHHHHHHHHHhhcCCeEEEEC-CCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHH
Confidence            2466778888888877655321  111112 2333322220         01111                         


Q ss_pred             --------------------------------------Ec-----cC--------Cccc--CCceeeCCCcccCCCCCEE
Q 013561          282 --------------------------------------IT-----LS--------FLVR--LSQIGVDEWLRAPSVEDVF  308 (441)
Q Consensus       282 --------------------------------------il-----~~--------~~~~--lG~I~Vd~~lqt~~~~~Vf  308 (441)
                                                            ++     +.        +..+  -|+|.||++|||  .|+||
T Consensus       237 ~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t--~~~Iy  314 (493)
T 1m6i_A          237 RREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA--RSNIW  314 (493)
T ss_dssp             HTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE--ETTEE
T ss_pred             HhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc--CCCee
Confidence                                                  00     00        0000  158999999998  59999


Q ss_pred             EecccccccccC-CCCCCCchHHHHHHHHHHHHHHHH
Q 013561          309 ALGDCAGFLEQT-GKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       309 A~GD~a~~~~~~-G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|||+..++.. |. ....++..|+.||+.+|.||.
T Consensus       315 A~GD~a~~~~~~~g~-~~~~~~~~A~~qg~~aa~ni~  350 (493)
T 1m6i_A          315 VAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMT  350 (493)
T ss_dssp             ECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHT
T ss_pred             EeeeeEeccCcccCc-cccchHHHHHHHHHHHHHHhc
Confidence            999999875432 32 245578899999999999997

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.85  E-value=1.4e-21  Score=190.48  Aligned_cols=219  Identities=19%  Similarity=0.173  Sum_probs=126.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC--CCcccccchhhhhcCCC--CccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR--NHMVFTPLLASTCVGTL--EFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~--~~~~~~~ll~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++|+|||||++|+++|..|++.|++|+|||++  ....+.+..+... +..  ...++...+.+    ..+..++.++.
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~v~~~~   89 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYL-GLIEIQASDMIKVFNK----HIEKYEVPVLL   89 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCST-TSTTEEHHHHHHHHHH----HHHTTTCCEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccC-CCCCCCHHHHHHHHHH----HHHHcCCEEEE
Confidence            469999999999999999999999999999997  1111111111111 010  01111111111    22234566666


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc---ccccccCHhH------------
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE---NAYFLREVNH------------  249 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~---~~~~l~~~~~------------  249 (441)
                      ++|++++.+.+.+.+...+.         .++.||+||+|||+.|+.|++||.+.   .........+            
T Consensus        90 ~~v~~i~~~~~~~~v~~~~g---------~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vv  160 (323)
T 3f8d_A           90 DIVEKIENRGDEFVVKTKRK---------GEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVI  160 (323)
T ss_dssp             SCEEEEEEC--CEEEEESSS---------CEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEE
T ss_pred             EEEEEEEecCCEEEEEECCC---------CEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEE
Confidence            88999988766666554321         37899999999999999999998753   1111111111            


Q ss_pred             -----HHHHHHHHHH-hcc--cccC----C----------CCceeEe--------------------eC---ce--EEE-
Q 013561          250 -----AQEIRKKLLL-NLM--LSEN----P----------GDTVQLF--------------------SK---YF--VIT-  281 (441)
Q Consensus       250 -----a~~~~~~i~~-~~~--~a~~----~----------G~~~vE~--------------------a~---~v--~V~-  281 (441)
                           +.++...+.. ...  +...    .          ...+|++                    .+   +-  .+. 
T Consensus       161 G~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~  240 (323)
T 3f8d_A          161 GGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNV  240 (323)
T ss_dssp             CCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEc
Confidence                 1111111100 000  0000    0          0001211                    11   10  111 


Q ss_pred             ---Ec-----------cCCccc---CCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          282 ---IT-----------LSFLVR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       282 ---il-----------~~~~~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                         ++           ...+..   .|+|.||+++|| +.|+|||+|||+..+      ..++++..|+.||+.+|.||.
T Consensus       241 D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~------~~~~~~~~A~~~g~~aa~~i~  313 (323)
T 3f8d_A          241 NGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRT-SVPGVFAAGDCTSAW------LGFRQVITAVAQGAVAATSAY  313 (323)
T ss_dssp             SEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBC-SSTTEEECSTTBSTT------TTCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCChhHHhhcCeeecCCCcEecCCCcee-cCCCEEEcceecCCC------CcccceeehhhHHHHHHHHHH
Confidence               11           001001   189999999999 999999999999431      247899999999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      +.|.
T Consensus       314 ~~l~  317 (323)
T 3f8d_A          314 RYVT  317 (323)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9996

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.84  E-value=9.7e-21  Score=195.64  Aligned_cols=120  Identities=18%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhh------------hh----c-CCCC------cc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAS------------TC----V-GTLE------FR  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~------------~~----~-g~~~------~~  161 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+++ ++-.    .+.|.            ..    . |...      ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS   82 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHH
Confidence            5799999999999999999999999999999983 3210    00000            00    0 1100      00


Q ss_pred             cccc-------chh--hhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          162 SVAE-------PVS--RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       162 ~~~~-------~~~--~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+..       .++  .....+.+..+++++.+++..++..  .+.+...+       ++..++.||+||||||++|+.|
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-------g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           83 KLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQ--SLTVRLNE-------GGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETT--EEEEEETT-------SSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCC--EEEEEeCC-------CceEEEEeCEEEEeCCCCCCCC
Confidence            0000       010  0112123223899999988888764  44444321       1124689999999999999999


Q ss_pred             CCCCcc
Q 013561          233 GIKGVK  238 (441)
Q Consensus       233 ~ipG~~  238 (441)
                      ++||.+
T Consensus       154 ~i~G~~  159 (467)
T 1zk7_A          154 PIPGLK  159 (467)
T ss_dssp             CCTTTT
T ss_pred             CCCCCC
Confidence            999975

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.83  E-value=5.5e-21  Score=187.12  Aligned_cols=222  Identities=11%  Similarity=0.037  Sum_probs=128.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcC----CCCcccc-ccchhhhhhhhcCCCCEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVG----TLEFRSV-AEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g----~~~~~~~-~~~~~~~~~~~~~~~~v~~~  183 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+++.++... .+.....    .+..... ...+........+..++.++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL-SALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTIC   85 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH-HHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee-hhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence            4689999999999999999999999999999998764111 0000000    0000000 01111111112233456666


Q ss_pred             -EEEEEEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCC---CcCCCCCCCccc----cccc-ccCHhH----
Q 013561          184 -LASCIGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA---EPLTFGIKGVKE----NAYF-LREVNH----  249 (441)
Q Consensus       184 -~~~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs---~p~~~~ipG~~~----~~~~-l~~~~~----  249 (441)
                       ..+|++++...+ .+.+...+          .++.||+||+|||+   .|+.|++||.+.    .++. +....+    
T Consensus        86 ~~~~v~~i~~~~~~~~~v~~~~----------g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~~~~~~~~~~~~  155 (332)
T 3lzw_A           86 LEQAVESVEKQADGVFKLVTNE----------ETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGR  155 (332)
T ss_dssp             CSCCEEEEEECTTSCEEEEESS----------EEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEESSCSCGGGGBTC
T ss_pred             ccCEEEEEEECCCCcEEEEECC----------CEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEEecCCHHHcCCC
Confidence             468999988766 33333311          25899999999999   888889998753    1211 111111    


Q ss_pred             ----------HHHHHHHHHHh---cccccC----------------CC-----------------CceeEeeC-----ce
Q 013561          250 ----------AQEIRKKLLLN---LMLSEN----------------PG-----------------DTVQLFSK-----YF  278 (441)
Q Consensus       250 ----------a~~~~~~i~~~---~~~a~~----------------~G-----------------~~~vE~a~-----~v  278 (441)
                                +.++-..+...   +.+...                .|                 ...+.+.+     ..
T Consensus       156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  235 (332)
T 3lzw_A          156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKE  235 (332)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEE
T ss_pred             EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceE
Confidence                      11111111000   000000                00                 00111111     00


Q ss_pred             EEE----Ec-----cC------Cc--ccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013561          279 VIT----IT-----LS------FL--VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE  341 (441)
Q Consensus       279 ~V~----il-----~~------~~--~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~  341 (441)
                      .+.    ++     +.      .+  .+-|+|.||+++|| +.|+|||+|||+.++      ..|+++..|+.||+.+|.
T Consensus       236 ~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~------~~~~~~~~A~~~g~~aa~  308 (332)
T 3lzw_A          236 ILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMET-NIEGFFAAGDICTYE------GKVNLIASGFGEAPTAVN  308 (332)
T ss_dssp             EEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBC-SSTTEEECGGGEECT------TCCCCHHHHHHHHHHHHH
T ss_pred             EEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCce-ecCCEEEccceecCC------CCcceEeeehhhHHHHHH
Confidence            111    11     10      00  01188999999999 999999999999653      247899999999999999


Q ss_pred             HHHHHhc
Q 013561          342 LFNKKIG  348 (441)
Q Consensus       342 nI~~~l~  348 (441)
                      ||.+.|.
T Consensus       309 ~i~~~l~  315 (332)
T 3lzw_A          309 NAKAYMD  315 (332)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhC
Confidence            9999996

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.83  E-value=6e-21  Score=187.32  Aligned_cols=121  Identities=13%  Similarity=0.079  Sum_probs=80.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC----Ccccccchhhhh-----cCCCC---ccccccchhhhhhh
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN----HMVFTPLLASTC-----VGTLE---FRSVAEPVSRIQTS  173 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~----~~~~~~ll~~~~-----~g~~~---~~~~~~~~~~~~~~  173 (441)
                      ..++++|+|||||++|+++|..|++.|++|+|||+.+    ..+  ..+....     .+...   ..++...+.+.   
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   93 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAG--GQLTTTTEIENFPGFPDGLTGSELMDRMREQ---   93 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT--CGGGGSSEECCSTTCTTCEEHHHHHHHHHHH---
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcC--cccccchhhcccCCCcccCCHHHHHHHHHHH---
Confidence            3456799999999999999999999999999999965    221  1111000     01111   01111111221   


Q ss_pred             hcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          174 LSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       174 ~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      + +..++.++.+.|++++.+.+.+.+......      +..++.||+||+|+|+.|+.|++||.+
T Consensus        94 ~-~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~------~~~~~~~d~vvlAtG~~~~~~~~~g~~  151 (338)
T 3itj_A           94 S-TKFGTEIITETVSKVDLSSKPFKLWTEFNE------DAEPVTTDAIILATGASAKRMHLPGEE  151 (338)
T ss_dssp             H-HHTTCEEECSCEEEEECSSSSEEEEETTCS------SSCCEEEEEEEECCCEEECCCCCTTHH
T ss_pred             H-HHcCCEEEEeEEEEEEEcCCEEEEEEEecC------CCcEEEeCEEEECcCCCcCCCCCCCch
Confidence            2 234678887889999998888877653110      124689999999999999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.83  E-value=5.2e-21  Score=197.74  Aligned_cols=121  Identities=21%  Similarity=0.265  Sum_probs=78.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh---------------c--CCCCccccccc-
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC---------------V--GTLEFRSVAEP-  166 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~---------------~--g~~~~~~~~~~-  166 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+++.++..    .+.|...               .  ...+...+... 
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK   83 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence            358999999999999999999999999999988876421    1111100               0  00011100000 


Q ss_pred             -----hh--hhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          167 -----VS--RIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       167 -----~~--~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                           +.  .....+.+..++.++.+++..++..  .+.+...+       ++..++.||+||||||+.|+.|++||.+
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~--~~~V~~~~-------g~~~~~~~d~lviAtG~~p~~p~i~G~~  153 (466)
T 3l8k_A           84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPT--HVIVKTDE-------GKEIEAETRYMIIASGAETAKLRLPGVE  153 (466)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETT--EEEEEETT-------SCEEEEEEEEEEECCCEEECCCCCTTGG
T ss_pred             HhheeccccchHHHHHHhCCCEEEEeEEEEecCC--eEEEEcCC-------CcEEEEecCEEEECCCCCccCCCCCCcc
Confidence                 11  1112234456899999999999865  44444321       1112389999999999999999999975

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.83  E-value=2.7e-21  Score=202.79  Aligned_cols=119  Identities=14%  Similarity=0.085  Sum_probs=76.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh--------------------cCCCC--
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC--------------------VGTLE--  159 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~--------------------~g~~~--  159 (441)
                      ++..++|+|||||++|+++|..|++.|++|+|||++++++-.    .+.|...                    .....  
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~  119 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKV  119 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhh
Confidence            344679999999999999999999999999999999854311    1111110                    00000  


Q ss_pred             --ccccccchhhh-h---hhh----cCCCCEEEE-EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC
Q 013561          160 --FRSVAEPVSRI-Q---TSL----SSDPNSYFY-LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE  228 (441)
Q Consensus       160 --~~~~~~~~~~~-~---~~~----~~~~~v~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~  228 (441)
                        .+.+...+... .   ..+    .+..++.++ .+.+..++.  +.+.+. +           ..+.||+||||||+.
T Consensus       120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g-----------~~~~~d~lViATGs~  185 (523)
T 1mo9_A          120 VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-G-----------KVFKAKNLILAVGAG  185 (523)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-T-----------EEEEBSCEEECCCEE
T ss_pred             hhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-C-----------EEEEeCEEEECCCCC
Confidence              00011111110 0   112    034567777 778888875  456543 1           368999999999999


Q ss_pred             cCCCCCCCcc
Q 013561          229 PLTFGIKGVK  238 (441)
Q Consensus       229 p~~~~ipG~~  238 (441)
                      |..|++||.+
T Consensus       186 p~~p~i~G~~  195 (523)
T 1mo9_A          186 PGTLDVPGVN  195 (523)
T ss_dssp             CCCCCSTTTT
T ss_pred             CCCCCCCCcc
Confidence            9999999975

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.82  E-value=2.2e-20  Score=182.70  Aligned_cols=118  Identities=13%  Similarity=0.100  Sum_probs=75.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh-hcCCCCccccc-cchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST-CVGTLEFRSVA-EPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~-~~g~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+.. .+ ..+.... ....+.+..+. ..+........+..++.++.++
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   93 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AG-GLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVE   93 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TT-GGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CC-ccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEee
Confidence            4689999999999999999999999999999953 21 1111000 00000000000 0111111112233467777788


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      +.+++.+.+.+.+...  +        .++.||+||+|+|+.|+.|++||.+
T Consensus        94 v~~i~~~~~~~~v~~~--~--------~~~~~~~li~AtG~~~~~~~i~g~~  135 (319)
T 3cty_A           94 VRSIKKTQGGFDIETN--D--------DTYHAKYVIITTGTTHKHLGVKGES  135 (319)
T ss_dssp             EEEEEEETTEEEEEES--S--------SEEEEEEEEECCCEEECCCCCBTTT
T ss_pred             EEEEEEeCCEEEEEEC--C--------CEEEeCEEEECCCCCcccCCCCChH
Confidence            9999877775555431  1        2789999999999999988888864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.82  E-value=2.8e-20  Score=182.97  Aligned_cols=223  Identities=14%  Similarity=0.110  Sum_probs=126.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch--hhhh-cCCCCcccc-ccch-hhhhhhhcCCCCEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL--ASTC-VGTLEFRSV-AEPV-SRIQTSLSSDPNSYFY  183 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll--~~~~-~g~~~~~~~-~~~~-~~~~~~~~~~~~v~~~  183 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+++.++.....  +... ........+ ...+ ..+.+.+. ..++.+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~   83 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVA-PFNPVYS   83 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHG-GGCCEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHH-HcCCEEE
Confidence            468999999999999999999999999999998866421100  0000 000000000 0011 11111122 2244554


Q ss_pred             -EEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC---CcCCCCCCCcccc----cc-cccCHhHH----
Q 013561          184 -LASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA---EPLTFGIKGVKEN----AY-FLREVNHA----  250 (441)
Q Consensus       184 -~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs---~p~~~~ipG~~~~----~~-~l~~~~~a----  250 (441)
                       ..+|..++.+.+.+.+...+.         .++.||+||+|+|+   .|+.+++||.+..    ++ .++..++.    
T Consensus        84 ~~~~v~~i~~~~~~~~v~~~~g---------~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  154 (335)
T 2zbw_A           84 LGERAETLEREGDLFKVTTSQG---------NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKR  154 (335)
T ss_dssp             ESCCEEEEEEETTEEEEEETTS---------CEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGGGGTTCE
T ss_pred             eCCEEEEEEECCCEEEEEECCC---------CEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchhhcCCCE
Confidence             457888887665655554211         36899999999998   5777788886421    21 12332221    


Q ss_pred             ----------HHHHHHHHH-h--cccccC--------------------CCC-----------------ceeEee---Cc
Q 013561          251 ----------QEIRKKLLL-N--LMLSEN--------------------PGD-----------------TVQLFS---KY  277 (441)
Q Consensus       251 ----------~~~~~~i~~-~--~~~a~~--------------------~G~-----------------~~vE~a---~~  277 (441)
                                .++-..+.. .  +.+...                    .|.                 .++++.   ++
T Consensus       155 v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g  234 (335)
T 2zbw_A          155 VLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQ  234 (335)
T ss_dssp             EEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTC
T ss_pred             EEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCC
Confidence                      111111000 0  000000                    000                 012221   11


Q ss_pred             --eEEE----E-----------ccCCcc--cCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHH
Q 013561          278 --FVIT----I-----------TLSFLV--RLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKY  338 (441)
Q Consensus       278 --v~V~----i-----------l~~~~~--~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~  338 (441)
                        ..+.    +           +..++.  +-|+|.||+++|| +.|+|||+|||+..+      ..++++..|+.||+.
T Consensus       235 ~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~------~~~~~~~~A~~~g~~  307 (335)
T 2zbw_A          235 EELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMAT-SIPGVYACGDIVTYP------GKLPLIVLGFGEAAI  307 (335)
T ss_dssp             CEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBC-SSTTEEECSTTEECT------TCCCCHHHHHHHHHH
T ss_pred             ceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCC-CCCCEEEeccccccC------cchhhhhhhHHHHHH
Confidence              1111    0           111100  1178999999999 999999999999653      236799999999999


Q ss_pred             HHHHHHHHhc
Q 013561          339 LAELFNKKIG  348 (441)
Q Consensus       339 aA~nI~~~l~  348 (441)
                      +|.||...|.
T Consensus       308 aa~~i~~~l~  317 (335)
T 2zbw_A          308 AANHAAAYAN  317 (335)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.82  E-value=7.1e-21  Score=197.03  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=75.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhh-----------------h-hcCCCCccccccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAS-----------------T-CVGTLEFRSVAEP  166 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~-----------------~-~~g~~~~~~~~~~  166 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+++.++..    .+.|.                 . ..|.. .......
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~~   84 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIE-MSEVRLN   84 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEE-ESCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccc-cCCCccC
Confidence            468999999999999999999999999999999765311    00110                 0 01111 0000001


Q ss_pred             hhhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          167 VSRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       167 ~~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      ...+              ...+.+..+++++.+++..++.  +.+.+...+       ++..++.||+||+|||+.|+.|
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~-------gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGK--NQVTATKAD-------GGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEET--TEEEEECTT-------SCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC--CEEEEEecC-------CCcEEEEeCEEEECCCCCCCCC
Confidence            1100              0111223578888888777764  455554321       0113689999999999999999


Q ss_pred             CCCCcc
Q 013561          233 GIKGVK  238 (441)
Q Consensus       233 ~ipG~~  238 (441)
                      ++||.+
T Consensus       156 ~i~g~~  161 (474)
T 1zmd_A          156 PGITID  161 (474)
T ss_dssp             TTCCCC
T ss_pred             CCCCCC
Confidence            888875

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.82  E-value=9.2e-21  Score=198.51  Aligned_cols=121  Identities=15%  Similarity=0.128  Sum_probs=76.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC--------Ccccccchhh-----h----------------hcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN--------HMVFTPLLAS-----T----------------CVGTLE  159 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~--------~~~~~~ll~~-----~----------------~~g~~~  159 (441)
                      ..+|+||||||||+++|..|++.|++|+|||+++        .++ ..++..     .                ..|...
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~G-Gtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLG-GTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTT-CHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcc-cccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            4689999999999999999999999999999854        222 111110     0                001110


Q ss_pred             -------ccccccchhhhh-------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          160 -------FRSVAEPVSRIQ-------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       160 -------~~~~~~~~~~~~-------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                             ...+....+...       ....+..++.++.+.+..++..  .+.+...+       ++..++.||+|||||
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~--~v~v~~~~-------g~~~~i~~d~lViAT  181 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPH--RIKATNNK-------GKEKIYSAERFLIAT  181 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEECTT-------CCCCEEEEEEEEECC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCC--EEEEEcCC-------CCEEEEECCEEEEEC
Confidence                   000000011100       0112235788999988888764  44444321       223478999999999


Q ss_pred             CCCcCCCCCCCccc
Q 013561          226 GAEPLTFGIKGVKE  239 (441)
Q Consensus       226 Gs~p~~~~ipG~~~  239 (441)
                      |++|+.|++||.++
T Consensus       182 Gs~p~~p~i~G~~~  195 (519)
T 3qfa_A          182 GERPRYLGIPGDKE  195 (519)
T ss_dssp             CEEECCCCCTTHHH
T ss_pred             CCCcCCCCCCCccC
Confidence            99999999999643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.82  E-value=3.5e-20  Score=181.76  Aligned_cols=116  Identities=15%  Similarity=0.110  Sum_probs=73.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh----hcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST----CVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++|+||||||+|+++|..|++.|++|+|||+.. ++ ..+....    ..+... ......+........+..++.++.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g-g~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~gv~~~~   84 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PG-GQIAWSEEVENFPGFPE-PIAGMELAQRMHQQAEKFGAKVEM   84 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TT-GGGGGCSCBCCSTTCSS-CBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CC-cccccccccccCCCCCC-CCCHHHHHHHHHHHHHHcCCEEEe
Confidence            4689999999999999999999999999999983 22 1111000    001100 000001111111112234677777


Q ss_pred             EEEEEEeCC--CC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          185 ASCIGIDTD--KH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~--~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      +++.+++.+  .+   .+...++           .++.||+||+|+|+.|+.|++||.+
T Consensus        85 ~~v~~i~~~~~~~~~~~v~~~~g-----------~~~~~~~vv~AtG~~~~~~~i~g~~  132 (325)
T 2q7v_A           85 DEVQGVQHDATSHPYPFTVRGYN-----------GEYRAKAVILATGADPRKLGIPGED  132 (325)
T ss_dssp             CCEEEEEECTTSSSCCEEEEESS-----------CEEEEEEEEECCCEEECCCCCTTTT
T ss_pred             eeEEEEEeccCCCceEEEEECCC-----------CEEEeCEEEECcCCCcCCCCCCChh
Confidence            889999876  43   4443331           3789999999999999989899875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.82  E-value=2.4e-20  Score=181.16  Aligned_cols=117  Identities=10%  Similarity=0.001  Sum_probs=73.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEE-EcCCCCcccccchhhh----hcCCCCccccccchhhhhhhhcCCCCEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVC-ISPRNHMVFTPLLAST----CVGTLEFRSVAEPVSRIQTSLSSDPNSYFY  183 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtv-ie~~~~~~~~~ll~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (441)
                      +++|+|||||+||+++|..|++.|++|+| ||+ +.++. .+....    ..+..... ....+........+..++.++
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~   80 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGG-QITSSSEIENYPGVAQVM-DGISFMAPWSEQCMRFGLKHE   80 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTG-GGGGCSCBCCSTTCCSCB-CHHHHHHHHHHHHTTTCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCc-eeeeeceeccCCCCCCCC-CHHHHHHHHHHHHHHcCcEEE
Confidence            57999999999999999999999999999 999 43321 111000    00111000 001111111123344577888


Q ss_pred             EEEEEEEeCCC--CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          184 LASCIGIDTDK--HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       184 ~~~v~~id~~~--~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      .++|+++ .+.  +.+.+....        +. ++.||+||+|||+.|+.|++||.+
T Consensus        81 ~~~v~~i-~~~~~~~~~v~~~~--------~~-~~~~d~lvlAtG~~~~~~~~~g~~  127 (315)
T 3r9u_A           81 MVGVEQI-LKNSDGSFTIKLEG--------GK-TELAKAVIVCTGSAPKKAGFKGED  127 (315)
T ss_dssp             CCCEEEE-EECTTSCEEEEETT--------SC-EEEEEEEEECCCEEECCCCCBTTT
T ss_pred             EEEEEEE-ecCCCCcEEEEEec--------CC-EEEeCEEEEeeCCCCCCCCCCChh
Confidence            7888888 444  455521110        12 789999999999999999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.82  E-value=6.6e-21  Score=198.46  Aligned_cols=44  Identities=30%  Similarity=0.464  Sum_probs=40.6

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.         .++++..|++||+++|.||.
T Consensus       310 G~i~Vd~~~~t-~~~~IyA~GD~~~---------~~~l~~~A~~~g~~aa~~i~  353 (495)
T 2wpf_A          310 GGVQVDEFSRT-NVPNIYAIGDITD---------RLMLTPVAINEGAALVDTVF  353 (495)
T ss_dssp             SSBCCCTTCBC-SSTTEEECGGGGC---------SCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEECCCCcc-CCCCEEEEeccCC---------CccCHHHHHHHHHHHHHHhc
Confidence            78999999999 9999999999992         36799999999999999997

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.81  E-value=9.9e-21  Score=196.87  Aligned_cols=44  Identities=32%  Similarity=0.561  Sum_probs=40.9

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+         ..|+++..|+.||+.+|+||.
T Consensus       318 G~i~vd~~~~t-~~~~IyA~GD~~---------~~~~~~~~A~~~g~~aa~~i~  361 (491)
T 3urh_A          318 GRVEIDRHFQT-SIAGVYAIGDVV---------RGPMLAHKAEDEGVAVAEIIA  361 (491)
T ss_dssp             SCBCCCTTCBC-SSTTEEECGGGS---------SSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCEeECCCCCC-CCCCEEEEEecC---------CCccchhHHHHHHHHHHHHHc
Confidence            78999999999 999999999999         246899999999999999997

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.81  E-value=1.4e-20  Score=195.66  Aligned_cols=45  Identities=38%  Similarity=0.510  Sum_probs=41.0

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.     +   .|.++..|+.||+++|+||.
T Consensus       306 G~i~vd~~~~t-~~~~IyA~GD~~~-----~---~~~~~~~A~~~g~~aa~~i~  350 (488)
T 3dgz_A          306 QKIIVDAQEAT-SVPHIYAIGDVAE-----G---RPELTPTAIKAGKLLAQRLF  350 (488)
T ss_dssp             CCBCCCTTSBC-SSTTEEECGGGBT-----T---CCCCHHHHHHHHHHHHHHHH
T ss_pred             CeEeECCCCcc-CCCCEEEeEEecC-----C---CCcchhHHHHHHHHHHHHHc
Confidence            78999999999 9999999999982     2   46889999999999999998

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.81  E-value=2.1e-20  Score=192.30  Aligned_cols=113  Identities=13%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhh-----------h------cCCC------Cc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----AST-----------C------VGTL------EF  160 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~-----------~------~g~~------~~  160 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+++ ++ ..++     |..           .      .|..      +.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~G-G~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LG-GTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   81 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TT-HHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CC-CcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            4689999999999999999999999999999974 32 1111     110           0      0100      00


Q ss_pred             cccccchhhh-------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          161 RSVAEPVSRI-------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       161 ~~~~~~~~~~-------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..+....+..       .....+..++.++.+++..++.  +.+.+ ++           .++.||+||||||++|..|+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~-~g-----------~~~~~d~lviAtGs~p~~p~  147 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV-NG-----------ETITADHILIATGGRPSHPD  147 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE-TT-----------EEEEEEEEEECCCEEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE-CC-----------EEEEeCEEEECCCCCCCCCC
Confidence            0000000000       0001123578888888877764  46655 21           37899999999999999999


Q ss_pred             CCCc
Q 013561          234 IKGV  237 (441)
Q Consensus       234 ipG~  237 (441)
                      +||.
T Consensus       148 i~g~  151 (450)
T 1ges_A          148 IPGV  151 (450)
T ss_dssp             STTG
T ss_pred             CCCc
Confidence            9987

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.81  E-value=1.3e-20  Score=194.05  Aligned_cols=119  Identities=12%  Similarity=0.098  Sum_probs=73.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------h-----cCCCCccccccchh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------C-----VGTLEFRSVAEPVS  168 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------~-----~g~~~~~~~~~~~~  168 (441)
                      ..+|+|||||+||+++|..|++.|++|+|||++ .++-.    .+.|..           .     .|.. .........
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   80 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIK-AENVTIDFA   80 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEE-CCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcc-cCCCccCHH
Confidence            358999999999999999999999999999998 33210    111110           0     0110 000000111


Q ss_pred             h--------------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          169 R--------------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       169 ~--------------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .              ....+.+..++.++.+.+..++.  +.+.+...+       + ..++.||+||+|||++|+.|++
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~--~~v~V~~~~-------G-~~~i~~d~lViATGs~p~~~~~  150 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA--NTVRVVNGD-------S-AQTYTFKNAIIATGSRPIELPN  150 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEET--TEEEEEETT-------E-EEEEECSEEEECCCEEECCBTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CeEEEEeCC-------C-cEEEEeCEEEEecCCCCCCCCC
Confidence            0              00112234578888887776764  445554321       0 1368999999999999999988


Q ss_pred             CCccc
Q 013561          235 KGVKE  239 (441)
Q Consensus       235 pG~~~  239 (441)
                      ||.+.
T Consensus       151 ~g~~~  155 (455)
T 1ebd_A          151 FKFSN  155 (455)
T ss_dssp             BCCCS
T ss_pred             CCccc
Confidence            88653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.81  E-value=2.4e-20  Score=192.72  Aligned_cols=121  Identities=18%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------------hcCCCCccccccch
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------------CVGTLEFRSVAEPV  167 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------------~~g~~~~~~~~~~~  167 (441)
                      ..+|+|||||+||+++|..|++.|++|+|||+++.++..    .+.|..                 ..|...........
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            358999999999999999999999999999999765321    111100                 01111000000001


Q ss_pred             hhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          168 SRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       168 ~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..+              ...+.+..++.++.+.+..++.  +.+.+...+       ++..++.||+||+|||+.|+.|+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~--~~~~v~~~~-------G~~~~~~~d~lviAtG~~p~~p~  152 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETA--HSIRVNGLD-------GKQEMLETKKTIIATGSEPTELP  152 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEET--TEEEEEETT-------SCEEEEEEEEEEECCCEEECCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEEecC-------CceEEEEcCEEEECCCCCcCCCC
Confidence            100              0011223468888887777765  455554321       11247899999999999999888


Q ss_pred             CCCcc
Q 013561          234 IKGVK  238 (441)
Q Consensus       234 ipG~~  238 (441)
                      +||.+
T Consensus       153 ~~g~~  157 (468)
T 2qae_A          153 FLPFD  157 (468)
T ss_dssp             TBCCC
T ss_pred             CCCCC
Confidence            88864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.81  E-value=7.1e-20  Score=164.39  Aligned_cols=166  Identities=16%  Similarity=0.098  Sum_probs=111.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc-chhhhhcCC---CCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP-LLASTCVGT---LEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~-ll~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      .+|+|||||++|+++|..|++.|.+|+|||+.+...... .+... .+.   ....++...+.+.   +. ..+++++.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~---~~-~~gv~v~~~   76 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNY-PGLLDEPSGEELLRRLEAH---AR-RYGAEVRPG   76 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCS-TTCTTCCCHHHHHHHHHHH---HH-HTTCEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhcc-CCCcCCCCHHHHHHHHHHH---HH-HcCCEEEeC
Confidence            479999999999999999999999999999987433110 00000 011   0011111222221   22 346777777


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      +|++++.+.+.+.+...+          .++++|+||+|+|..|+.+...|.                            
T Consensus        77 ~v~~i~~~~~~~~v~~~~----------g~i~ad~vI~A~G~~~~~~~~~g~----------------------------  118 (180)
T 2ywl_A           77 VVKGVRDMGGVFEVETEE----------GVEKAERLLLCTHKDPTLPSLLGL----------------------------  118 (180)
T ss_dssp             CCCEEEECSSSEEEECSS----------CEEEEEEEEECCTTCCHHHHHHTC----------------------------
T ss_pred             EEEEEEEcCCEEEEEECC----------CEEEECEEEECCCCCCCccccCCC----------------------------
Confidence            888887665545444321          168999999999988642111111                            


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                             ++            + . |.|.||+++|| +.|+|||+|||+..        .+++++.|++||+.+|.||..
T Consensus       119 -------~~------------~-~-g~i~vd~~~~t-~~~~i~a~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          119 -------TR------------R-G-AYIDTDEGGRT-SYPRVYAAGVARGK--------VPGHAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             -------CE------------E-T-TEECCCTTCBC-SSTTEEECGGGGTC--------CSCCHHHHHHHHHHHHHHHHH
T ss_pred             -------Cc------------c-C-ceEEeCCCCCc-CCCCEEEeecccCc--------chhhHHHHHHhHHHHHHHHHH
Confidence                   00            0 0 77999999999 99999999999943        123899999999999999998


Q ss_pred             Hhc
Q 013561          346 KIG  348 (441)
Q Consensus       346 ~l~  348 (441)
                      .+.
T Consensus       169 ~~~  171 (180)
T 2ywl_A          169 DLR  171 (180)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            886

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.80  E-value=8.5e-21  Score=195.92  Aligned_cols=44  Identities=45%  Similarity=0.735  Sum_probs=40.6

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.         .++++..|++||+.+|+||.
T Consensus       289 G~i~vd~~~~t-~~~~IyA~GD~~~---------~~~~~~~A~~~g~~aa~~i~  332 (464)
T 2a8x_A          289 KAIGVDDYMRT-NVGHIYAIGDVNG---------LLQLAHVAEAQGVVAAETIA  332 (464)
T ss_dssp             SSBCCCTTSBC-SSTTEEECGGGGC---------SSCSHHHHHHHHHHHHHHHH
T ss_pred             CCEeECcCCcc-CCCCEEEeECcCC---------CccCHHHHHHHHHHHHHHhc
Confidence            78999999999 9999999999992         36789999999999999997

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.80  E-value=1.7e-20  Score=193.82  Aligned_cols=120  Identities=16%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc----chhhh-----------------hcCCCCccccccch
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP----LLAST-----------------CVGTLEFRSVAEPV  167 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~----ll~~~-----------------~~g~~~~~~~~~~~  167 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+++.++...    +.|..                 ..|.. ........
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~   84 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVK-VSNVEIDL   84 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE-ESCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcc-cCCCccCH
Confidence            5689999999999999999999999999999997653210    11100                 00110 00000011


Q ss_pred             hhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          168 SRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       168 ~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..+              ...+.+..++.++.+.++.++.  +.+.+...+       ++..++.||+||+|||+.|..|+
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~-------G~~~~i~~d~lIiAtGs~p~~p~  155 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP--SEISVDTIE-------GENTVVKGKHIIIATGSDVKSLP  155 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEET--TEEEECCSS-------SCCEEEECSEEEECCCEEECCBT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEEEeCC-------CceEEEEcCEEEECCCCCCCCCC
Confidence            100              0111122467888877666664  455554311       11247899999999999999888


Q ss_pred             CCCcc
Q 013561          234 IKGVK  238 (441)
Q Consensus       234 ipG~~  238 (441)
                      ++|.+
T Consensus       156 ~~g~~  160 (470)
T 1dxl_A          156 GVTID  160 (470)
T ss_dssp             TBCCC
T ss_pred             CCCCC
Confidence            88864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.80  E-value=1.2e-19  Score=176.48  Aligned_cols=117  Identities=13%  Similarity=0.036  Sum_probs=74.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhh----hcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLAST----CVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .+|+|||||++|+++|..|++.|+ +|+|||++. .+ ..+....    ..+.... .....+........+..++.++.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~g-g~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~v~~~~   78 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-PG-GQITGSSEIENYPGVKEV-VSGLDFMQPWQEQCFRFGLKHEM   78 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-TT-CGGGGCSCBCCSTTCCSC-BCHHHHHHHHHHHHHTTSCEEEC
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-CC-cccccccccccCCCCccc-CCHHHHHHHHHHHHHHcCCEEEE
Confidence            479999999999999999999999 999999963 21 1111000    0011000 00011111111112234677777


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      ++|.+++.+.+.+.+...+.         .++.||+||+|+|+.|+.|++||.+
T Consensus        79 ~~v~~i~~~~~~~~v~~~~g---------~~~~~~~vv~AtG~~~~~~~~~g~~  123 (311)
T 2q0l_A           79 TAVQRVSKKDSHFVILAEDG---------KTFEAKSVIIATGGSPKRTGIKGES  123 (311)
T ss_dssp             SCEEEEEEETTEEEEEETTS---------CEEEEEEEEECCCEEECCCCCBTHH
T ss_pred             EEEEEEEEcCCEEEEEEcCC---------CEEECCEEEECCCCCCCCCCCCChh
Confidence            88999988777555543211         3789999999999999999999864

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.80  E-value=4.8e-20  Score=191.72  Aligned_cols=44  Identities=25%  Similarity=0.459  Sum_probs=40.7

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||++||| +.|+|||+|||+.         .++++..|++||+.+|.||.
T Consensus       306 G~I~Vd~~~~t-~~~~IyA~GD~~~---------~~~l~~~A~~~g~~aa~~i~  349 (490)
T 1fec_A          306 GAIKVDAYSKT-NVDNIYAIGDVTD---------RVMLTPVAINEGAAFVDTVF  349 (490)
T ss_dssp             SCBCCCTTCBC-SSTTEEECGGGGC---------SCCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEECCCCcc-CCCCEEEEeccCC---------CccCHHHHHHHHHHHHHHhc
Confidence            78999999999 9999999999992         36799999999999999997

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.80  E-value=2.3e-20  Score=194.44  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccC---CCeEEEEcCCCCcccc----cchhhh----------------hcCCCC-cccccc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK---IYDAVCISPRNHMVFT----PLLAST----------------CVGTLE-FRSVAE  165 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~~~~~~~----~ll~~~----------------~~g~~~-~~~~~~  165 (441)
                      .+|+|||||++|+++|..|++.   |++|+|||+++ ++..    .+.|..                ..|... ......
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            5899999999999999999998   99999999987 3211    011100                001110 000001


Q ss_pred             chhhh--------------hhhhcCCCCEEEEEEEEEEEeCC----CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          166 PVSRI--------------QTSLSSDPNSYFYLASCIGIDTD----KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       166 ~~~~~--------------~~~~~~~~~v~~~~~~v~~id~~----~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                      ....+              ...+.+..++.++.+.+..++..    .+.+.+...+       ++...+.||+||+|||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~-------g~~~~~~~d~lviATGs  154 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAAD-------GSTSEHEADVVLVATGA  154 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTT-------SCEEEEEESEEEECCCE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCC-------CcEEEEEeCEEEEcCCC
Confidence            11110              01122235788888888877762    2556554321       11136899999999999


Q ss_pred             CcCCCCCCCcc
Q 013561          228 EPLTFGIKGVK  238 (441)
Q Consensus       228 ~p~~~~ipG~~  238 (441)
                      .|..|++||.+
T Consensus       155 ~p~~p~i~g~~  165 (499)
T 1xdi_A          155 SPRILPSAQPD  165 (499)
T ss_dssp             EECCCGGGCCC
T ss_pred             CCCCCCCCCCC
Confidence            99988888864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.80  E-value=6.6e-20  Score=190.24  Aligned_cols=45  Identities=33%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+.     |   .|.+++.|+.||+++|+||.
T Consensus       306 G~i~vd~~~~t-~~~~IyA~GD~~~-----~---~~~~~~~A~~~g~~aa~~i~  350 (483)
T 3dgh_A          306 DKIPVDSQEAT-NVANIYAVGDIIY-----G---KPELTPVAVLAGRLLARRLY  350 (483)
T ss_dssp             TBBCCCTTCBC-SSTTEEECSTTBT-----T---SCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEECcCCcc-CCCCEEEEEcccC-----C---CCccHHHHHHHHHHHHHHHc
Confidence            78999999999 9999999999982     2   47899999999999999997

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=8.9e-20  Score=189.14  Aligned_cols=44  Identities=32%  Similarity=0.490  Sum_probs=40.4

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||+++|| +.|+|||+|||+      +   .|.++..|++||+.+|+||.
T Consensus       302 G~i~vd~~~~t-~~~~IyA~GD~~------~---~~~~~~~A~~~g~~aa~~i~  345 (479)
T 2hqm_A          302 DQIIADEYQNT-NVPNIYSLGDVV------G---KVELTPVAIAAGRKLSNRLF  345 (479)
T ss_dssp             SCBCCCTTCBC-SSTTEEECGGGT------T---SSCCHHHHHHHHHHHHHHHH
T ss_pred             CCEeECCCCcc-CCCCEEEEEecC------C---CcccHHHHHHHHHHHHHHhc
Confidence            78999999999 999999999998      2   36789999999999999997

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.79  E-value=5.2e-19  Score=185.50  Aligned_cols=190  Identities=17%  Similarity=0.119  Sum_probs=129.6

Q ss_pred             cCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561           65 SSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus        65 ~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|+++|.. |+. .....+.++++    +....+.++       |++++|||||++|+++|..+++.|.+|||+++.. +
T Consensus       192 ATGs~P~~-P~~-~~~~~~~~~ts----~~~l~l~~l-------P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~-~  257 (542)
T 4b1b_A          192 ATGCRPHI-PDD-VEGAKELSITS----DDIFSLKKD-------PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSI-V  257 (542)
T ss_dssp             CCCEEECC-CSS-SBTHHHHCBCH----HHHTTCSSC-------CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC-S
T ss_pred             ccCCCCCC-CCc-ccCCCccccCc----hhhhccccC-------CceEEEECCCHHHHHHHHHHHhcCCeEEEecccc-c
Confidence            67777743 322 22223455665    444566665       7899999999999999999999999999998754 2


Q ss_pred             ccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561          145 VFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI  223 (441)
Q Consensus       145 ~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl  223 (441)
                      +           ...+.++...+.+.   +. ..++.+..+ .+..++...+.+.+...+.         .++.+|.|++
T Consensus       258 L-----------~~~D~ei~~~l~~~---l~-~~gi~~~~~~~v~~~~~~~~~~~v~~~~~---------~~~~~D~vLv  313 (542)
T 4b1b_A          258 L-----------RGFDQQCAVKVKLY---ME-EQGVMFKNGILPKKLTKMDDKILVEFSDK---------TSELYDTVLY  313 (542)
T ss_dssp             S-----------TTSCHHHHHHHHHH---HH-HTTCEEEETCCEEEEEEETTEEEEEETTS---------CEEEESEEEE
T ss_pred             c-----------cccchhHHHHHHHH---HH-hhcceeecceEEEEEEecCCeEEEEEcCC---------CeEEEEEEEE
Confidence            2           11222333334433   33 346676665 6777777777777665322         3678999999


Q ss_pred             cCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCC
Q 013561          224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPS  303 (441)
Q Consensus       224 AtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~  303 (441)
                      |+|.+||+..+.-                         +.++      +++.            ...+.|.||+++|| +
T Consensus       314 AvGR~Pnt~~L~l-------------------------e~~g------v~~~------------~~~~~i~vd~~~~T-s  349 (542)
T 4b1b_A          314 AIGRKGDIDGLNL-------------------------ESLN------MNVN------------KSNNKIIADHLSCT-N  349 (542)
T ss_dssp             CSCEEESCGGGCG-------------------------GGTT------CCEE------------TTTTEECCCTTSBC-S
T ss_pred             cccccCCccccCc-------------------------ccce------eeec------------ccCceEeccccccc-c
Confidence            9999998753211                         0000      1111            11144689999999 9


Q ss_pred             CCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          304 VEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       304 ~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .|+|||+|||+      +  ..|++++.|..||+++|+||.
T Consensus       350 ~p~IyAiGDv~------~--~~p~La~~A~~eg~~aa~~i~  382 (542)
T 4b1b_A          350 IPSIFAVGDVA------E--NVPELAPVAIKAGEILARRLF  382 (542)
T ss_dssp             STTEEECTTSB------T--TCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEecccc------C--CchhHHHHHHHHHHHHHHHHh
Confidence            99999999998      2  257899999999999999998

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.79  E-value=2.2e-19  Score=178.72  Aligned_cols=224  Identities=14%  Similarity=0.102  Sum_probs=125.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc--hhhh-hcCCCCcccc-ccch-hhhhhhhcCCCCEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL--LAST-CVGTLEFRSV-AEPV-SRIQTSLSSDPNSYF  182 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l--l~~~-~~g~~~~~~~-~~~~-~~~~~~~~~~~~v~~  182 (441)
                      +.++|+|||||++|+++|..|++.|++|+|||+.+.++....  .+.. .........+ ...+ ..+.+.+. ..++.+
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~   91 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAE-RYNPDV   91 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHH-TTCCEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHH-HhCCEE
Confidence            356899999999999999999999999999999876542110  0000 0000000000 0111 11112122 234555


Q ss_pred             EE-EEEEEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCC---CcCCCCCCC-ccc----cccc-ccCHhHH-
Q 013561          183 YL-ASCIGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA---EPLTFGIKG-VKE----NAYF-LREVNHA-  250 (441)
Q Consensus       183 ~~-~~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs---~p~~~~ipG-~~~----~~~~-l~~~~~a-  250 (441)
                      .. .+|+.++.+.+ .+.+...+         ..++.||+||+|+|+   .|+.+++|| .++    .++. ++...+. 
T Consensus        92 ~~~~~v~~i~~~~~~~~~v~~~~---------g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~~  162 (360)
T 3ab1_A           92 VLNETVTKYTKLDDGTFETRTNT---------GNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFK  162 (360)
T ss_dssp             ECSCCEEEEEECTTSCEEEEETT---------SCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGGGT
T ss_pred             EcCCEEEEEEECCCceEEEEECC---------CcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHHcC
Confidence            44 47888887654 44444321         137899999999998   577777888 432    1211 2232211 


Q ss_pred             -------------HHHHHHHHH-h--cccccC--------------------------CC------------CceeEee-
Q 013561          251 -------------QEIRKKLLL-N--LMLSEN--------------------------PG------------DTVQLFS-  275 (441)
Q Consensus       251 -------------~~~~~~i~~-~--~~~a~~--------------------------~G------------~~~vE~a-  275 (441)
                                   .++-..+.. .  +.+...                          .+            ..++++. 
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~  242 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRS  242 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEe
Confidence                         111111000 0  000000                          00            0011111 


Q ss_pred             -Cc--eEEE----Ec-----------cCCccc--CCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHH
Q 013561          276 -KY--FVIT----IT-----------LSFLVR--LSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQ  335 (441)
Q Consensus       276 -~~--v~V~----il-----------~~~~~~--lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~q  335 (441)
                       ++  ..+.    ++           ..++..  -|+|.||+++|| ++|+|||+|||+.++      ..++++..|+.|
T Consensus       243 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~------~~~~~~~~A~~~  315 (360)
T 3ab1_A          243 SDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKT-SVDGLYAAGDIAYYP------GKLKIIQTGLSE  315 (360)
T ss_dssp             TTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBC-SSTTEEECSTTEECT------TCCCSHHHHHHH
T ss_pred             cCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcC-CCCCEEEecCccCCC------CccceeehhHHH
Confidence             11  0111    11           000000  178999999999 999999999999653      136899999999


Q ss_pred             HHHHHHHHHHHhc
Q 013561          336 GKYLAELFNKKIG  348 (441)
Q Consensus       336 g~~aA~nI~~~l~  348 (441)
                      |+.+|.||.+.|.
T Consensus       316 g~~aa~~i~~~l~  328 (360)
T 3ab1_A          316 ATMAVRHSLSYIK  328 (360)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999886

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.79  E-value=3.8e-20  Score=191.77  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhh----------------h-----hcCCCC------c
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAS----------------T-----CVGTLE------F  160 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~----------------~-----~~g~~~------~  160 (441)
                      ..++|+||||||+|+++|..|++.|++|+|||++. ++ ..+++.                .     ..|...      .
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~G-G~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LG-GTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TT-HHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CC-CcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            35799999999999999999999999999999764 22 111110                0     001100      0


Q ss_pred             cccccc-------hhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC-
Q 013561          161 RSVAEP-------VSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF-  232 (441)
Q Consensus       161 ~~~~~~-------~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~-  232 (441)
                      ..+...       +........+..++.++.+.+..++.....+.. +           ..++.||+||||||+.|..| 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~-~-----------g~~~~~d~lviAtG~~p~~p~  164 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV-S-----------GKKYTAPHILIATGGMPSTPH  164 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEE-T-----------TEEEECSCEEECCCEEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEE-C-----------CEEEEeeEEEEccCCCCCCCC
Confidence            000000       000011112235788888888877766655542 1           13789999999999999998 


Q ss_pred             --CCCCcc
Q 013561          233 --GIKGVK  238 (441)
Q Consensus       233 --~ipG~~  238 (441)
                        ++||.+
T Consensus       165 ~~~i~G~~  172 (478)
T 3dk9_A          165 ESQIPGAS  172 (478)
T ss_dssp             TTTSTTGG
T ss_pred             cCCCCCCc
Confidence              899954

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.79  E-value=8.5e-20  Score=189.41  Aligned_cols=44  Identities=36%  Similarity=0.539  Sum_probs=40.5

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|.||++||| +.|+|||+|||+.         .|+++..|++||+++|+||.
T Consensus       304 G~i~vd~~~~t-~~~~IyA~GD~~~---------~~~l~~~A~~~g~~aa~~i~  347 (482)
T 1ojt_A          304 GFIEVDKQMRT-NVPHIYAIGDIVG---------QPMLAHKAVHEGHVAAENCA  347 (482)
T ss_dssp             SCCCCCTTSBC-SSTTEEECGGGTC---------SSCCHHHHHHHHHHHHHHHT
T ss_pred             CCEeeCCCccc-CCCCEEEEEcccC---------CCccHHHHHHHHHHHHHHHc
Confidence            77999999999 9999999999992         36789999999999999997

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.79  E-value=1.2e-19  Score=187.38  Aligned_cols=113  Identities=13%  Similarity=0.149  Sum_probs=72.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhh-----------h-----cCCCC------cc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----AST-----------C-----VGTLE------FR  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~-----------~-----~g~~~------~~  161 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+++ ++ ..++     |..           .     .|...      ..
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~G-G~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LG-GTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP   81 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TT-HHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CC-CcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            4689999999999999999999999999999984 32 1111     100           0     01110      00


Q ss_pred             ccccchh----hh---hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          162 SVAEPVS----RI---QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       162 ~~~~~~~----~~---~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .+....+    ++   .....+..++.++.+++..++.  +.|.+ ++           .++.||+||||||+.|..|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~-~g-----------~~~~~d~lviAtGs~p~~p~i  147 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV-EG-----------QRLSADHIVIATGGRPIVPRL  147 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE-TT-----------EEEEEEEEEECCCEEECCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE-CC-----------EEEEcCEEEECCCCCCCCCCC
Confidence            0000000    00   0001123578888888777764  56665 21           368999999999999999999


Q ss_pred             CCc
Q 013561          235 KGV  237 (441)
Q Consensus       235 pG~  237 (441)
                      ||.
T Consensus       148 ~G~  150 (463)
T 2r9z_A          148 PGA  150 (463)
T ss_dssp             TTG
T ss_pred             CCc
Confidence            997

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.78  E-value=2e-20  Score=199.15  Aligned_cols=168  Identities=18%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             CCccccccccCCCcccCCCcccccccccCcCCCCcC-CCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEEC
Q 013561           38 FSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKT-TPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLG  116 (441)
Q Consensus        38 ~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~-~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIG  116 (441)
                      +.++++.+...+++|.+   .    |...|+.|... .....++.+++++.+.                 ...++|+|||
T Consensus        59 ~~~~l~~~~g~~tvP~v---~----i~g~~igG~~~l~~~~~~g~L~~~l~~~-----------------~~~~dvvVIG  114 (598)
T 2x8g_A           59 IQKCLASFSKIETVPQM---F----VRGKFIGDSQTVLKYYSNDELAGIVNES-----------------KYDYDLIVIG  114 (598)
T ss_dssp             HHHHTHHHHSCCCSCEE---E----ETTEEEECHHHHHHHHHTTCHHHHHHCC-----------------SSSEEEEEEC
T ss_pred             HHHHHHHHhCCceeCEE---E----ECCEEEEeeehhhhhhhcCcchhhcccc-----------------cccccEEEEC
Confidence            66777777788899986   2    33333333210 1223455566666541                 1256899999


Q ss_pred             CCHHHHHHHHhhccCCCeEEEEcCC-CCc-----cccc------chhhhh----------------cCCCCccc-cccch
Q 013561          117 TGWGACRFLKGIDTKIYDAVCISPR-NHM-----VFTP------LLASTC----------------VGTLEFRS-VAEPV  167 (441)
Q Consensus       117 gG~aGl~aA~~L~~~g~~Vtvie~~-~~~-----~~~~------ll~~~~----------------~g~~~~~~-~~~~~  167 (441)
                      |||||+++|..|++.|++|+|||+. +..     .+.+      +.|...                .|...... .....
T Consensus       115 ~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  194 (598)
T 2x8g_A          115 GGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNW  194 (598)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCCCCH
T ss_pred             CCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccccCCcCccCH
Confidence            9999999999999999999999973 210     0111      111100                01110000 01111


Q ss_pred             hh-------hhh-------hhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          168 SR-------IQT-------SLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       168 ~~-------~~~-------~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      ..       ...       ...+..++.++.+.+..++.  +.+.+...+       ++..++.||+||||||++|+.|+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~--~~v~v~~~~-------g~~~~~~~d~lviAtGs~p~~p~  265 (598)
T 2x8g_A          195 STMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISP--HEVQITDKN-------QKVSTITGNKIILATGERPKYPE  265 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEECTT-------CCEEEEEEEEEEECCCEEECCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEEeCC-------CCeEEEEeCEEEEeCCCCCCCCC
Confidence            11       000       01123478888777777765  345554321       11236899999999999999999


Q ss_pred             CCCcc
Q 013561          234 IKGVK  238 (441)
Q Consensus       234 ipG~~  238 (441)
                      +||.+
T Consensus       266 i~G~~  270 (598)
T 2x8g_A          266 IPGAV  270 (598)
T ss_dssp             STTHH
T ss_pred             CCCcc
Confidence            99964

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.78  E-value=6.3e-19  Score=171.33  Aligned_cols=117  Identities=11%  Similarity=-0.005  Sum_probs=72.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc--ccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF--TPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~--~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .+|+||||||+|+++|..|++.|++|+|||+...-.+  ...++... +....  ....+.+......+..++.++.+ +
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~   78 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYI-SVPKT--EGQKLAGALKVHVDEYDVDVIDSQS   78 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBT-TBSSE--EHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceecccccccccc-CcCCC--CHHHHHHHHHHHHHHcCCeEEccCE
Confidence            3799999999999999999999999999986421000  00000000 00000  00111111111223457888877 8


Q ss_pred             EEEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          187 CIGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       187 v~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      |+.++.+.+   .+.+...+         ..++.||+||+|+|+.|+.|++||.+
T Consensus        79 v~~i~~~~~~~~~~~v~~~~---------g~~~~~~~lv~AtG~~~~~~~~~g~~  124 (310)
T 1fl2_A           79 ASKLIPAAVEGGLHQIETAS---------GAVLKARSIIVATGAKWRNMNVPGED  124 (310)
T ss_dssp             EEEEECCSSTTCCEEEEETT---------SCEEEEEEEEECCCEEECCCCCTTTT
T ss_pred             EEEEEecccCCceEEEEECC---------CCEEEeCEEEECcCCCcCCCCCCChh
Confidence            999976532   33333211         13689999999999999888899874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.78  E-value=1.2e-19  Score=179.15  Aligned_cols=120  Identities=13%  Similarity=-0.038  Sum_probs=75.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc------------cchhhhhcCCCCc-cc-cc---cchhhhh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT------------PLLASTCVGTLEF-RS-VA---EPVSRIQ  171 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~------------~ll~~~~~g~~~~-~~-~~---~~~~~~~  171 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+++.++-.            +.......+.... .. ..   ..+....
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL   82 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence            458999999999999999999999999999999765311            0000000010000 00 00   1111111


Q ss_pred             hhhcCCCCEEEEE-EEEEEEeCCCCEEE-EEecCCCCCCCCCCcceeeCCEEEEcCCC--CcCCCCCCCcc
Q 013561          172 TSLSSDPNSYFYL-ASCIGIDTDKHEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAGA--EPLTFGIKGVK  238 (441)
Q Consensus       172 ~~~~~~~~v~~~~-~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtGs--~p~~~~ipG~~  238 (441)
                      ..+.+..++.+.. .+|++++.+.+.+. +...+          .++.||+||+|+|.  .|+.|++||.+
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~----------g~~~~d~vV~AtG~~~~~~~~~~~g~~  143 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDG----------RQWLARAVISATGTWGEAYTPEYQGLE  143 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTS----------CEEEEEEEEECCCSGGGBCCCCCTTGG
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCC----------CEEEeCEEEECCCCCCCCCCCCCCCcc
Confidence            1122223555544 48899988888766 55421          27899999999994  67788899865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.78  E-value=2.7e-19  Score=176.33  Aligned_cols=116  Identities=10%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh----hcCC---CCccccccchhhhhhhhcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST----CVGT---LEFRSVAEPVSRIQTSLSSDPN  179 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~----~~g~---~~~~~~~~~~~~~~~~~~~~~~  179 (441)
                      ++.++|+|||||++|+++|..|++.|++|+|||+.. .+ ..+....    ..+.   ....++...+.+    ..+..+
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~   85 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FG-GALMTTTDVENYPGFRNGITGPELMDEMRE----QALRFG   85 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CS-CGGGSCSCBCCSTTCTTCBCHHHHHHHHHH----HHHHTT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CC-CceeccchhhhcCCCCCCCCHHHHHHHHHH----HHHHcC
Confidence            345799999999999999999999999999999752 21 1111000    0000   000111111111    122246


Q ss_pred             EEEEEEEEEEEeCCCCEEEE-EecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          180 SYFYLASCIGIDTDKHEVYC-ETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       180 v~~~~~~v~~id~~~~~v~~-~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      +.++.+.+.+++. .+.+.+ ...+         ..++.||+||+|+|+.|+.|++||.+
T Consensus        86 v~~~~~~v~~i~~-~~~~~v~~~~~---------g~~~~~d~lviAtG~~~~~~~i~g~~  135 (335)
T 2a87_A           86 ADLRMEDVESVSL-HGPLKSVVTAD---------GQTHRARAVILAMGAAARYLQVPGEQ  135 (335)
T ss_dssp             CEEECCCEEEEEC-SSSSEEEEETT---------SCEEEEEEEEECCCEEECCCCCTHHH
T ss_pred             CEEEEeeEEEEEe-CCcEEEEEeCC---------CCEEEeCEEEECCCCCccCCCCCchH
Confidence            7777777888887 333333 2211         13789999999999999999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.77  E-value=3e-19  Score=174.27  Aligned_cols=118  Identities=13%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhh-hcCCCCc-cccc-cchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAST-CVGTLEF-RSVA-EPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~-~~g~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+.. .. ..+.... ....+.. ..+. ..+........+..++.++.+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KG-GQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD   82 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TT-GGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CC-ceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence            5689999999999999999999999999999752 22 1111000 0000000 0000 011111111122346778778


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      +++.++.+.+.+.+.. +         ..++.||+||+|+|+.|+.|++||.+
T Consensus        83 ~v~~i~~~~~~~~v~~-~---------~~~~~~~~lv~AtG~~~~~~~~~g~~  125 (320)
T 1trb_A           83 HINKVDLQNRPFRLNG-D---------NGEYTCDALIIATGASARYLGLPSEE  125 (320)
T ss_dssp             CEEEEECSSSSEEEEE-S---------SCEEEEEEEEECCCEEECCCCCHHHH
T ss_pred             eeeEEEecCCEEEEEe-C---------CCEEEcCEEEECCCCCcCCCCCCChH
Confidence            8999998777666521 1         13789999999999999988888864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.77  E-value=6e-20  Score=199.68  Aligned_cols=84  Identities=10%  Similarity=0.033  Sum_probs=53.3

Q ss_pred             CCcccccccccCcCCC-CcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCC
Q 013561           55 PSSIRMTTHMSSWSRG-IKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIY  133 (441)
Q Consensus        55 ~grvcp~~ce~~c~~~-~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~  133 (441)
                      +.|.|+. |+. |... ....++ .+......+.. +.+   ..|.....++..++++|+||||||||+++|..|++.|+
T Consensus       341 ~~~~ci~-Cn~-C~~~~~~~~~~-~~C~~n~~~g~-e~~---~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~  413 (729)
T 1o94_A          341 DIRVCIG-CNV-CISRWEIGGPP-MICTQNATAGE-EYR---RGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGY  413 (729)
T ss_dssp             GCCCCCC-CCH-HHHHHHHSSSC-CCCSSCTTTTT-HHH---HCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccccccc-cch-hcccccccCCc-eeeccCccccc-ccc---ccccccccccccCCceEEEECCCHHHHHHHHHHHHCCC
Confidence            5688874 874 8754 222222 22233333221 111   12211111223457899999999999999999999999


Q ss_pred             eEEEEcCCCCcc
Q 013561          134 DAVCISPRNHMV  145 (441)
Q Consensus       134 ~Vtvie~~~~~~  145 (441)
                      +|||||++++++
T Consensus       414 ~Vtlie~~~~~G  425 (729)
T 1o94_A          414 TVHLTDTAEKIG  425 (729)
T ss_dssp             EEEEECSSSSTT
T ss_pred             eEEEEeCCCCcC
Confidence            999999998765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.77  E-value=3.2e-19  Score=175.18  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=75.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcC----CCCcccccchhhh-hcCCCCc-ccc-ccchhhhhhhhcCCCCEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISP----RNHMVFTPLLAST-CVGTLEF-RSV-AEPVSRIQTSLSSDPNSY  181 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~----~~~~~~~~ll~~~-~~g~~~~-~~~-~~~~~~~~~~~~~~~~v~  181 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+    ..... ..+.... ....+.. ..+ ...+........+..++.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG-GQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT-CGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCC-ceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            46899999999999999999999999999998    32221 1111000 0000000 000 001111111112234677


Q ss_pred             EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCccc
Q 013561          182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKE  239 (441)
Q Consensus       182 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~  239 (441)
                      ++.+++++++.+.+.+.+.. + +        .++.||+||+|+|+.|..|++||.++
T Consensus        87 ~~~~~v~~i~~~~~~~~v~~-~-~--------~~~~~~~vv~A~G~~~~~~~~~g~~~  134 (333)
T 1vdc_A           87 IFTETVTKVDFSSKPFKLFT-D-S--------KAILADAVILAIGAVAKRLSFVGSGE  134 (333)
T ss_dssp             EECCCCCEEECSSSSEEEEC-S-S--------EEEEEEEEEECCCEEECCCCCBTCSS
T ss_pred             EEEeEEEEEEEcCCEEEEEE-C-C--------cEEEcCEEEECCCCCcCCCCCCCccc
Confidence            77777889988776554443 1 1        37899999999999999888988754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.77  E-value=2.7e-19  Score=185.66  Aligned_cols=116  Identities=16%  Similarity=0.200  Sum_probs=71.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch-----hhh----------------hcCCC------Ccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL-----AST----------------CVGTL------EFR  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll-----~~~----------------~~g~~------~~~  161 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+. .++ ..++     |..                ..|..      +..
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~G-G~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~  103 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIG-GTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE  103 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTT-HHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCC-CceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            358999999999999999999999999999994 332 1111     100                00110      000


Q ss_pred             ccc-------cchhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC-CCC
Q 013561          162 SVA-------EPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL-TFG  233 (441)
Q Consensus       162 ~~~-------~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~-~~~  233 (441)
                      .+.       ..+......+.+..++.++.+.+..++.  +.+.+..  +        ...+.||+||||||+.|. .|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~~--~--------~~~~~~d~lviAtG~~p~~~p~  171 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELSV--T--------GERISAEKILIATGAKIVSNSA  171 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEETT--T--------CCEEEEEEEEECCCEEECCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEec--C--------CeEEEeCEEEEccCCCcccCCC
Confidence            000       0011111111223578888888888874  4565531  1        137899999999999998 888


Q ss_pred             CCCcc
Q 013561          234 IKGVK  238 (441)
Q Consensus       234 ipG~~  238 (441)
                      +||.+
T Consensus       172 i~G~~  176 (484)
T 3o0h_A          172 IKGSD  176 (484)
T ss_dssp             CBTGG
T ss_pred             CCCcc
Confidence            99864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.72  E-value=6.5e-18  Score=176.94  Aligned_cols=217  Identities=15%  Similarity=0.084  Sum_probs=123.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCc---c-ccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEF---R-SVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~---~-~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      ..+|+||||||||+++|..|++.|++|+|||+..  +  +..... .+....   . .....+........+..++.++.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~--G--G~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~  286 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF--G--GQVLDT-VDIENYISVPKTEGQKLAGALKAHVSDYDVDVID  286 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST--T--GGGTTC-SCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEEC
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC--C--Cccccc-ccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEc
Confidence            5689999999999999999999999999998742  1  111000 000000   0 00011111111122345788887


Q ss_pred             E-EEEEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccc----cccccC----------
Q 013561          185 A-SCIGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKEN----AYFLRE----------  246 (441)
Q Consensus       185 ~-~v~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~----~~~l~~----------  246 (441)
                      + +|..++.+.+   .+.+...+ +        .++.||+||+|||+.|+.+++||.++.    ++....          
T Consensus       287 ~~~v~~i~~~~~~~~~~~V~~~~-g--------~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~  357 (521)
T 1hyu_A          287 SQSASKLVPAATEGGLHQIETAS-G--------AVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKR  357 (521)
T ss_dssp             SCCEEEEECCSSTTSCEEEEETT-S--------CEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSE
T ss_pred             CCEEEEEEeccCCCceEEEEECC-C--------CEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCe
Confidence            7 8999976421   33333211 1        378999999999999988889986421    221111          


Q ss_pred             ----------HhHHHHHHHH------------------HHHhccc-ccC---C------------CCceeEeeC---c--
Q 013561          247 ----------VNHAQEIRKK------------------LLLNLML-SEN---P------------GDTVQLFSK---Y--  277 (441)
Q Consensus       247 ----------~~~a~~~~~~------------------i~~~~~~-a~~---~------------G~~~vE~a~---~--  277 (441)
                                ++-|..+...                  +.+.+.. .+.   .            ...++.+.+   +  
T Consensus       358 V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~  437 (521)
T 1hyu_A          358 VAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI  437 (521)
T ss_dssp             EEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCE
T ss_pred             EEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCce
Confidence                      1112222111                  0000000 000   0            001122211   0  


Q ss_pred             eEEE----E-----ccCC---c--cc---CCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHH
Q 013561          278 FVIT----I-----TLSF---L--VR---LSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA  340 (441)
Q Consensus       278 v~V~----i-----l~~~---~--~~---lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA  340 (441)
                      ..+.    +     .|..   .  ..   -|+|.||+++|| ++|+|||+|||+..        .++++..|+.||+.||
T Consensus       438 ~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~~~--------~~~~~~~A~~~g~~aa  508 (521)
T 1hyu_A          438 HSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCET-SVKGVFAAGDCTTV--------PYKQIIIATGEGAKAS  508 (521)
T ss_dssp             EEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBC-SSTTEEECSTTBCC--------SSCCHHHHHHHHHHHH
T ss_pred             EEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCC-CCCCEEEeecccCC--------CcceeeehHHhHHHHH
Confidence            0111    1     1110   0  00   188999999999 99999999999943        2368999999999999


Q ss_pred             HHHHHHhc
Q 013561          341 ELFNKKIG  348 (441)
Q Consensus       341 ~nI~~~l~  348 (441)
                      .+|.++|.
T Consensus       509 ~~i~~~L~  516 (521)
T 1hyu_A          509 LSAFDYLI  516 (521)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.70  E-value=1.3e-16  Score=164.73  Aligned_cols=163  Identities=24%  Similarity=0.267  Sum_probs=113.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|||+|+.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~gV~i~~~~~v  233 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL--P--------Q-GDPETAALLRRA---LE-KEGIRVRTKTKA  233 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------T-SCHHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc--c--------c-cCHHHHHHHHHH---HH-hcCCEEEcCCEE
Confidence            5799999999999999999999999999999988654  1        1 111222223222   22 347777765 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+....+.    .++..++++|.||+|+|.+|+...+ +.+                 ..  .+.     
T Consensus       234 ~~i~~~~~~~~v~~~~~~----~g~~~~i~~D~vv~a~G~~p~~~~l-~l~-----------------~~--g~~-----  284 (464)
T 2eq6_A          234 VGYEKKKDGLHVRLEPAE----GGEGEEVVVDKVLVAVGRKPRTEGL-GLE-----------------KA--GVK-----  284 (464)
T ss_dssp             EEEEEETTEEEEEEEETT----CCSCEEEEESEEEECSCEEESCTTS-SHH-----------------HH--TCC-----
T ss_pred             EEEEEeCCEEEEEEeecC----CCceeEEEcCEEEECCCcccCCCCC-Chh-----------------hc--Cce-----
Confidence            888766555444321010    0122378999999999999886532 210                 00  111     


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                            +            +.. |+|.||+++|| +.|+|||+|||+.         .|+++..|++||+.+|+||.
T Consensus       285 ------~------------~~~-G~i~vd~~~~t-~~~~Iya~GD~~~---------~~~l~~~A~~~g~~aa~~i~  332 (464)
T 2eq6_A          285 ------V------------DER-GFIRVNARMET-SVPGVYAIGDAAR---------PPLLAHKAMREGLIAAENAA  332 (464)
T ss_dssp             ------B------------CTT-SCBCCCTTCBC-SSTTEEECGGGTC---------SSCCHHHHHHHHHHHHHHHT
T ss_pred             ------e------------cCC-CCEEECCCccc-CCCCEEEEeccCC---------CcccHHHHHHHHHHHHHHhc
Confidence                  1            111 78999999999 9999999999992         36789999999999999997

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.70  E-value=1.9e-16  Score=163.83  Aligned_cols=162  Identities=18%  Similarity=0.238  Sum_probs=113.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~~~-~~~~~~l~~~---l~-~~gv~i~~~~~v  247 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG--A--------SMD-GEVAKATQKF---LK-KQGLDFKLSTKV  247 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--S--------SSC-HHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccc--c--------ccC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            5799999999999999999999999999999998654  1        111 1122223222   22 347777765 78


Q ss_pred             EEEeC--CCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC--CCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          188 IGIDT--DKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG--IKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       188 ~~id~--~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~--ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      .+++.  +.+.+.+...+.    ..++..++++|.||+|+|.+|+...  ++..                      .   
T Consensus       248 ~~i~~~~~~~~~~v~~~~~----~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~----------------------g---  298 (478)
T 1v59_A          248 ISAKRNDDKNVVEIVVEDT----KTNKQENLEAEVLLVAVGRRPYIAGLGAEKI----------------------G---  298 (478)
T ss_dssp             EEEEEETTTTEEEEEEEET----TTTEEEEEEESEEEECSCEEECCTTSCTTTT----------------------T---
T ss_pred             EEEEEecCCCeEEEEEEEc----CCCCceEEECCEEEECCCCCcCCCCCCchhc----------------------C---
Confidence            88876  454443322100    0011247899999999999988652  1211                      0   


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                              +++            +.. |+|.||++||| +.|+|||+|||+.         .|++++.|++||+.+|+||
T Consensus       299 --------~~~------------~~~-G~i~vd~~~~t-~~~~IyA~GD~~~---------~~~~~~~A~~~g~~aa~~i  347 (478)
T 1v59_A          299 --------LEV------------DKR-GRLVIDDQFNS-KFPHIKVVGDVTF---------GPMLAHKAEEEGIAAVEML  347 (478)
T ss_dssp             --------CCB------------CTT-SCBCCCTTSBC-SSTTEEECGGGSS---------SCCCHHHHHHHHHHHHHHH
T ss_pred             --------cee------------CCC-CCEeECcCCcc-CCCCEEEeeccCC---------CcccHHHHHHHHHHHHHHH
Confidence                    111            111 78999999999 9999999999992         3678999999999999999


Q ss_pred             HH
Q 013561          344 NK  345 (441)
Q Consensus       344 ~~  345 (441)
                      ..
T Consensus       348 ~~  349 (478)
T 1v59_A          348 KT  349 (478)
T ss_dssp             HH
T ss_pred             cC
Confidence            84

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.69  E-value=1.2e-16  Score=166.10  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=113.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +.+ . +.++. ..+
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~d~~~~~~l~~~---l~~-~-V~i~~~~~v  237 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA--N--------L-QDEEMKRYAEKT---FNE-E-FYFDAKARV  237 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT--T--------C-CCHHHHHHHHHH---HHT-T-SEEETTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc--c--------c-CCHHHHHHHHHH---Hhh-C-cEEEECCEE
Confidence            6799999999999999999999999999999998654  1        1 111222223322   333 3 66654 477


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+++.+.+.....     .+++.++++|.||+|+|.+|+...+. .+.                        +   
T Consensus       238 ~~i~~~~~~v~v~~~~~-----~G~~~~i~~D~Vi~a~G~~p~~~~l~-l~~------------------------~---  284 (492)
T 3ic9_A          238 ISTIEKEDAVEVIYFDK-----SGQKTTESFQYVLAATGRKANVDKLG-LEN------------------------T---  284 (492)
T ss_dssp             EEEEECSSSEEEEEECT-----TCCEEEEEESEEEECSCCEESCSSSC-GGG------------------------S---
T ss_pred             EEEEEcCCEEEEEEEeC-----CCceEEEECCEEEEeeCCccCCCCCC-hhh------------------------c---
Confidence            88876655554443210     12234789999999999998765321 100                        0   


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeC-CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVD-EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd-~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                         ++++            +.. |+|.|| +++|| +.|+|||+|||+.         .+++++.|+.||+.+|.||..
T Consensus       285 ---gl~~------------~~~-G~i~vd~~~~~t-~~~~IyA~GD~~~---------~~~~~~~A~~~g~~aa~~i~~  337 (492)
T 3ic9_A          285 ---SIEL------------DKK-NSPLFDELTLQT-SVDHIFVAGDANN---------TLTLLHEAADDGKVAGTNAGA  337 (492)
T ss_dssp             ---CCCB------------CTT-CCBCCCTTTCBC-SSTTEEECGGGGT---------SSCSHHHHHHHHHHHHHHHHH
T ss_pred             ---CCEE------------CCC-CCEeECcccccC-CCCCEEEEEecCC---------CCccHHHHHHHHHHHHHHHcC
Confidence               0111            111 789999 89999 9999999999992         467899999999999999985

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.68  E-value=1.6e-16  Score=163.76  Aligned_cols=157  Identities=24%  Similarity=0.353  Sum_probs=111.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|||+++.+++.  +.         .+.++...+.+.   +. ..++.++.+ .+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~~---------~~~~~~~~l~~~---l~-~~gv~i~~~~~v  235 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL--PT---------YDSELTAPVAES---LK-KLGIALHLGHSV  235 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS--TT---------SCHHHHHHHHHH---HH-HHTCEEETTCEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccc--cc---------cCHHHHHHHHHH---HH-HCCCEEEECCEE
Confidence            6799999999999999999999999999999998654  11         111122222222   22 246777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++. .+ +.+.. .+      +++.++++|.||+|+|.+|+.+.+ +.+..                           
T Consensus       236 ~~i~~-~~-v~v~~-~~------G~~~~i~~D~vv~a~G~~p~~~~l-~~~~~---------------------------  278 (458)
T 1lvl_A          236 EGYEN-GC-LLAND-GK------GGQLRLEADRVLVAVGRRPRTKGF-NLECL---------------------------  278 (458)
T ss_dssp             EEEET-TE-EEEEC-SS------SCCCEECCSCEEECCCEEECCSSS-SGGGS---------------------------
T ss_pred             EEEEe-CC-EEEEE-CC------CceEEEECCEEEECcCCCcCCCCC-CcHhc---------------------------
Confidence            88887 43 65552 11      122478999999999999987543 22100                           


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |   +++.            .  ++|.||++||| +.|+|||+|||+.         .|+++..|.+||+.+|+||.
T Consensus       279 g---~~~~------------~--~~i~vd~~~~t-~~~~Iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~  328 (458)
T 1lvl_A          279 D---LKMN------------G--AAIAIDERCQT-SMHNVWAIGDVAG---------EPMLAHRAMAQGEMVAEIIA  328 (458)
T ss_dssp             C---CCEE------------T--TEECCCTTCBC-SSTTEEECGGGGC---------SSCCHHHHHHHHHHHHHHHT
T ss_pred             C---Cccc------------C--CEEeECCCCcC-CCCCEEEeeccCC---------CcccHHHHHHHHHHHHHHhc
Confidence            0   1111            1  15899999999 9999999999992         36789999999999999997

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.68  E-value=1.1e-17  Score=180.91  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=69.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      ...+++|+|||||+||+++|..|++.|++|+|||++++++..........+..+...+   .......+.+..++.+..+
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~gv~~~~~  464 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRV---KEYREAVLAELPNVEIYRE  464 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHH---HHHHHHHHHTCTTEEEESS
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHH---HHHHHHHHHHcCCCEEEEC
Confidence            3457899999999999999999999999999999998776332222222222222221   1222222333235665443


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc--------CCCCCCCcc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP--------LTFGIKGVK  238 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p--------~~~~ipG~~  238 (441)
                      +         .+...+           ..++.||+||||||+.|        ..|++||.+
T Consensus       465 ~---------~v~~~~-----------~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~  505 (690)
T 3k30_A          465 S---------PMTGDD-----------IVEFGFEHVITATGATWRTDGVARFHTTALPIAE  505 (690)
T ss_dssp             C---------CCCHHH-----------HHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCT
T ss_pred             C---------eecHHH-----------HhhcCCCEEEEcCCCccccccccccCCCCCCCCC
Confidence            1         111111           13578999999999984        467788864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.67  E-value=3e-16  Score=162.27  Aligned_cols=161  Identities=22%  Similarity=0.302  Sum_probs=114.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   + +..++.++.+ .+
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---l-~~~Gv~v~~~~~v  244 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL--P--------A-VDEQVAKEAQKI---L-TKQGLKILLGARV  244 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--T--------T-SCHHHHHHHHHH---H-HHTTEEEEETCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--c--------c-cCHHHHHHHHHH---H-HhCCCEEEECCEE
Confidence            6799999999999999999999999999999988654  1        1 111222223332   2 2357887765 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+...+.+     + ..++++|.||+|+|.+|+...+.-. .                            
T Consensus       245 ~~i~~~~~~~~v~~~~~~-----g-~~~~~~D~vi~a~G~~p~~~~l~~~-~----------------------------  289 (476)
T 3lad_A          245 TGTEVKNKQVTVKFVDAE-----G-EKSQAFDKLIVAVGRRPVTTDLLAA-D----------------------------  289 (476)
T ss_dssp             EEEEECSSCEEEEEESSS-----E-EEEEEESEEEECSCEEECCTTCCSS-C----------------------------
T ss_pred             EEEEEcCCEEEEEEEeCC-----C-cEEEECCEEEEeeCCcccCCCCCcc-c----------------------------
Confidence            888766554444332111     1 2478999999999999876532110 0                            


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        .++++.            .. |+|.||+++|| +.|+|||+|||+         ..|.++..|+.||+.+|+||.
T Consensus       290 --~g~~~~------------~~-G~i~vd~~~~t-~~~~Iya~GD~~---------~~~~~~~~A~~~g~~aa~~i~  341 (476)
T 3lad_A          290 --SGVTLD------------ER-GFIYVDDYCAT-SVPGVYAIGDVV---------RGAMLAHKASEEGVVVAERIA  341 (476)
T ss_dssp             --CSCCBC------------TT-SCBCCCTTSBC-SSTTEEECGGGS---------SSCCCHHHHHHHHHHHHHHHH
T ss_pred             --cCcccc------------CC-CCEeeCCCccc-CCCCEEEEEccC---------CCcccHHHHHHHHHHHHHHhc
Confidence              001111            11 78999999999 999999999999         246799999999999999997

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.67  E-value=7.6e-16  Score=160.38  Aligned_cols=164  Identities=20%  Similarity=0.245  Sum_probs=112.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~gv~i~~~~~v  240 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--R--------KFD-ESVINVLEND---MK-KNNINIVTFADV  240 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--T--------TSC-HHHHHHHHHH---HH-HTTCEEECSCCE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC--c--------ccc-hhhHHHHHHH---HH-hCCCEEEECCEE
Confidence            5799999999999999999999999999999988654  1        111 1122222222   22 347777665 68


Q ss_pred             EEEeCCC-CEEEEEecCCCCCCCCCCcce-eeCCEEEEcCCCCcCCCCC--CCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          188 IGIDTDK-HEVYCETVNNGKLSHEPHQFK-VAYDKLVIAAGAEPLTFGI--KGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       188 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~-i~yD~LvlAtGs~p~~~~i--pG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      .+++.+. +.+.+...+       +  .+ +++|.||+|+|.+|+...+  ...                          
T Consensus       241 ~~i~~~~~~~~~v~~~~-------g--~~~~~~D~vi~a~G~~p~~~~l~~~~~--------------------------  285 (500)
T 1onf_A          241 VEIKKVSDKNLSIHLSD-------G--RIYEHFDHVIYCVGRSPDTENLKLEKL--------------------------  285 (500)
T ss_dssp             EEEEESSTTCEEEEETT-------S--CEEEEESEEEECCCBCCTTTTSSCTTT--------------------------
T ss_pred             EEEEEcCCceEEEEECC-------C--cEEEECCEEEECCCCCcCCCCCCchhc--------------------------
Confidence            8887543 223333211       1  24 8999999999999886422  111                          


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEeccccccccc------------------------
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQ------------------------  319 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~------------------------  319 (441)
                             ++++ +             -|+|.||+++|| +.|+|||+|||+.+++.                        
T Consensus       286 -------g~~~-~-------------~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  343 (500)
T 1onf_A          286 -------NVET-N-------------NNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENV  343 (500)
T ss_dssp             -------TCCB-S-------------SSCEEECTTCBC-SSSSEEECSTTEEEC--------------------------
T ss_pred             -------Cccc-c-------------CCEEEECCCccc-CCCCEEEEecccccccccccccccccccccccccccccccc
Confidence                   0111 0             178999999999 99999999999954310                        


Q ss_pred             CC-CCCCCchHHHHHHHHHHHHHHHH
Q 013561          320 TG-KPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       320 ~G-~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .+ ....++++..|++||+++|+||.
T Consensus       344 ~~~~~~~~~~~~~A~~~g~~aa~~i~  369 (500)
T 1onf_A          344 TEDIFYNVQLTPVAINAGRLLADRLF  369 (500)
T ss_dssp             ----CBCCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcccchhHHHHHHHHHHHHHh
Confidence            00 00257899999999999999997

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.67  E-value=3.2e-16  Score=161.22  Aligned_cols=159  Identities=20%  Similarity=0.264  Sum_probs=114.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++|+.+++.  +.         ....+...+.+.   +. ..++.++.+ +|
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l--~~---------~~~~~~~~l~~~---l~-~~Gv~i~~~~~V  231 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL--PT---------MDLEVSRAAERV---FK-KQGLTIRTGVRV  231 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--TT---------SCHHHHHHHHHH---HH-HHTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc--cc---------cCHHHHHHHHHH---HH-HCCCEEEECCEE
Confidence            5799999999999999999999999999999988654  10         111122222222   22 236777664 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      ++++.+.+.+.+...+         ..++++|.||+|+|.+|+.+.+ +.+.-                   .+      
T Consensus       232 ~~i~~~~~~v~v~~~~---------g~~i~~D~vv~A~G~~p~~~~l-~~~~~-------------------g~------  276 (455)
T 2yqu_A          232 TAVVPEAKGARVELEG---------GEVLEADRVLVAVGRRPYTEGL-SLENA-------------------GL------  276 (455)
T ss_dssp             EEEEEETTEEEEEETT---------SCEEEESEEEECSCEEECCTTC-CGGGG-------------------TC------
T ss_pred             EEEEEeCCEEEEEECC---------CeEEEcCEEEECcCCCcCCCCC-Chhhc-------------------CC------
Confidence            8888766666655421         1378999999999999887542 21100                   00      


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                           ++            +.. |+|.||+++|| +.|+|||+|||+.         .++++..|.+||+.+|+||..
T Consensus       277 -----~~------------~~~-g~i~vd~~~~t-~~~~iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~~  326 (455)
T 2yqu_A          277 -----ST------------DER-GRIPVDEHLRT-RVPHIYAIGDVVR---------GPMLAHKASEEGIAAVEHMVR  326 (455)
T ss_dssp             -----CC------------CTT-SCCCCCTTSBC-SSTTEEECGGGSS---------SCCCHHHHHHHHHHHHHHHHH
T ss_pred             -----cc------------CCC-CcEeECCCccc-CCCCEEEEecCCC---------CccCHHHHHHhHHHHHHHHcC
Confidence                 00            111 77999999999 9999999999992         367899999999999999983

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.67  E-value=1.4e-17  Score=173.31  Aligned_cols=212  Identities=14%  Similarity=0.107  Sum_probs=124.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhh-hhcCCCCccccccchhhhhhhhcCCCCEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLAS-TCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY-LAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~  186 (441)
                      .++|+|||||++|+++|..|++. ++|+|||+++++++...... ...|...  ........+.+.+  ..++.+. ...
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~--~~~~~~~~l~~~l--~~~v~~~~~~~  182 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNK--DSRKVVEELVGKL--NENTKIYLETS  182 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTE--EHHHHHHHHHHTC--CTTEEEETTEE
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCC--CHHHHHHHHHHHH--hcCCEEEcCCE
Confidence            35899999999999999999999 99999999987754321100 0011110  0111112222222  3466654 457


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc-cccccccCHhHHHHHHHHHH----Hhc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYFLREVNHAQEIRKKLL----LNL  261 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~----~~~  261 (441)
                      +.+++.+.+.+.+...+.      ++...+.||+||||||+.|+.|++||.+ ++++..   .++..+.+...    ..+
T Consensus       183 v~~i~~~~~~~~~~~~~~------~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~---~~~~~~~~~~~~~~~~~v  253 (493)
T 1y56_A          183 ALGVFDKGEYFLVPVVRG------DKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRR---DFALEVMNVWEVAPGRKV  253 (493)
T ss_dssp             ECCCEECSSSEEEEEEET------TEEEEEEESCEEECCCEEECCCCCTTTTSTTEEEH---HHHHHHHHTSCBCSCSEE
T ss_pred             EEEEEcCCcEEEEEEecC------CeEEEEECCEEEECCCCCccCCCCCCCCCCCEEEc---HHHHHHHHhcccCCCCEE
Confidence            888887766554432111      1123689999999999999998899875 344332   23322221100    001


Q ss_pred             ccccCCCC-----------------------------ceeEeeCceEEE----Ec-----c------CCccc-----CCc
Q 013561          262 MLSENPGD-----------------------------TVQLFSKYFVIT----IT-----L------SFLVR-----LSQ  292 (441)
Q Consensus       262 ~~a~~~G~-----------------------------~~vE~a~~v~V~----il-----~------~~~~~-----lG~  292 (441)
                      .+.+ +|.                             .++++.++..+.    ++     +      ..+.+     -|+
T Consensus       254 vViG-gG~~gle~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~  332 (493)
T 1y56_A          254 AVTG-SKADEVIQELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYY  332 (493)
T ss_dssp             EEES-TTHHHHHHHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEE
T ss_pred             EEEC-CCHHHHHHHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCce
Confidence            1111 111                             112222211111    11     1      11110     156


Q ss_pred             ee-eCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561          293 IG-VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       293 I~-Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |. ||+++|  +.|+|||+|||+.          +.++..|+.||+.+|.||...+
T Consensus       333 i~~vd~~~~--s~~~vya~GD~~~----------~~~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          333 SPVLDEYHR--IKDGIYVAGSAVS----------IKPHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             EECCCTTSE--EETTEEECSTTTC----------CCCHHHHHHHHHHHHHHHHHHT
T ss_pred             eeccccccC--cCCCEEEEeccCC----------ccCHHHHHHHHHHHHHHHHHHc
Confidence            76 899999  6899999999993          3578899999999999999876

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.67  E-value=5.3e-17  Score=161.50  Aligned_cols=116  Identities=13%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcc------------cccchhhhhcCCCCcc--------------
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMV------------FTPLLASTCVGTLEFR--------------  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~------------~~~ll~~~~~g~~~~~--------------  161 (441)
                      .++|+|||||++|+++|..|++.|+ +|+|||+++ ++            +.+.......|..+..              
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            4589999999999999999999999 999999986 21            0111100111110000              


Q ss_pred             -ccc-cchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561          162 -SVA-EPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG  236 (441)
Q Consensus       162 -~~~-~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG  236 (441)
                       ... ..+......+.+..++.++.+ .|++++.+.+.+.+...+          .++.||+||+|+|+.+. |.+|+
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~----------g~~~~d~vVlAtG~~~~-p~ip~  149 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTT----------ETYHADYIFVATGDYNF-PKKPF  149 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESS----------CCEEEEEEEECCCSTTS-BCCCS
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCC----------CEEEeCEEEECCCCCCc-cCCCC
Confidence             000 011111111222346666655 688888765444444321          15899999999998754 45555

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.65  E-value=1.7e-16  Score=177.20  Aligned_cols=131  Identities=11%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhc-CCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCV-GTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .++|+||||||||+++|..|++.|++|+|||++++++.. ++ . +. ..+.............+.+.+..++.++.+ +
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~-~~-~-~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~  204 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGT-LL-D-TAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTT  204 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGG-GG-G-SSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCce-ec-c-CCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence            468999999999999999999999999999999876521 22 1 10 001110000111121222333347777654 7


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCC-------CCcceeeCCEEEEcCCCCcCCCCCCCcc-ccccc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHE-------PHQFKVAYDKLVIAAGAEPLTFGIKGVK-ENAYF  243 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~-------~~~~~i~yD~LvlAtGs~p~~~~ipG~~-~~~~~  243 (441)
                      |.+++.+.....+..... ...+.       ++..++.||+||||||+.|+.+++||.+ ++++.
T Consensus       205 V~~i~~~~~~~~v~~~~~-~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~  268 (965)
T 2gag_A          205 VFGSYDANYLIAAQRRTV-HLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIML  268 (965)
T ss_dssp             EEEEETTTEEEEEEECST-TCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEE
T ss_pred             EEeeecCCceeeeEeecc-cccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEE
Confidence            888886654433332110 00110       1113689999999999999988999875 34443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.63  E-value=3e-15  Score=154.36  Aligned_cols=157  Identities=16%  Similarity=0.197  Sum_probs=111.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||+|+.|+++|..|++.|.+|+++++.+++.  +        ..+ .++...+.+.   + +..+++++.+ .|
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l--~--------~~~-~~~~~~l~~~---l-~~~Gv~i~~~~~v  234 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL--S--------RFD-QDMRRGLHAA---M-EEKGIRILCEDII  234 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------TSC-HHHHHHHHHH---H-HHTTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--c--------ccC-HHHHHHHHHH---H-HHCCCEEECCCEE
Confidence            6799999999999999999999999999999988654  1        111 1122222222   2 2357777764 78


Q ss_pred             EEEeCCCCE-EEEE-ecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          188 IGIDTDKHE-VYCE-TVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       188 ~~id~~~~~-v~~~-~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .+++.+.+. +.+. ..+       +   ++++|.||+|+|.+|+...+. .+.                        . 
T Consensus       235 ~~i~~~~~~~~~v~~~~~-------g---~i~aD~Vv~a~G~~p~~~~l~-l~~------------------------~-  278 (463)
T 4dna_A          235 QSVSADADGRRVATTMKH-------G---EIVADQVMLALGRMPNTNGLG-LEA------------------------A-  278 (463)
T ss_dssp             EEEEECTTSCEEEEESSS-------C---EEEESEEEECSCEEESCTTSS-TGG------------------------G-
T ss_pred             EEEEEcCCCEEEEEEcCC-------C---eEEeCEEEEeeCcccCCCCCC-ccc------------------------c-
Confidence            888765332 3443 211       1   389999999999998765321 100                        0 


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                           ++++            +.. |+|.||+++|| +.|+|||+|||+.         .++++..|+.||+.+|+||.
T Consensus       279 -----g~~~------------~~~-G~i~vd~~~~t-~~~~iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~  329 (463)
T 4dna_A          279 -----GVRT------------NEL-GAIIVDAFSRT-STPGIYALGDVTD---------RVQLTPVAIHEAMCFIETEY  329 (463)
T ss_dssp             -----TCCB------------CTT-SCBCCCTTCBC-SSTTEEECSGGGS---------SCCCHHHHHHHHHHHHHHHH
T ss_pred             -----CceE------------CCC-CCEeECcCCCC-CCCCEEEEEecCC---------CCCChHHHHHHHHHHHHHHc
Confidence                 0111            111 78999999998 9999999999992         46899999999999999998

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.62  E-value=3.5e-16  Score=161.48  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHhhcc---CCCe---EEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT---KIYD---AVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~---~g~~---Vtvie~~~~~~  145 (441)
                      ++|+|||||++|+++|..|++   .|++   |+|||+++.++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G   44 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG   44 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC
Confidence            689999999999999999999   9999   99999987653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.62  E-value=1.2e-16  Score=172.30  Aligned_cols=105  Identities=17%  Similarity=0.196  Sum_probs=68.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .++++|+||||||||+++|..|++.|++|+|||+++++++...+.....+...   ....+......+. ..+++++.++
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~gv~~~~~~  446 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEE---FYETLRYYRRMIE-VTGVTLKLNH  446 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTT---HHHHHHHHHHHHH-HHTCEEEESC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHH---HHHHHHHHHHHHH-HcCCEEEeCc
Confidence            34679999999999999999999999999999999887644332222211111   1111111111122 2356665543


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCccee-eCCEEEEcCCCCcCCCCCCCcc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKV-AYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i-~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      .+.           .            ..+ .||+||||||++|+.|++||.+
T Consensus       447 ~v~-----------~------------~~~~~~d~lviAtG~~p~~~~i~G~~  476 (671)
T 1ps9_A          447 TVT-----------A------------DQLQAFDETILASGIVPRTPPIDGID  476 (671)
T ss_dssp             CCC-----------S------------SSSCCSSEEEECCCEEECCCCCBTTT
T ss_pred             Eec-----------H------------HHhhcCCEEEEccCCCcCCCCCCCCC
Confidence            210           0            134 8999999999999999999975

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.61  E-value=4.5e-17  Score=169.58  Aligned_cols=112  Identities=10%  Similarity=-0.007  Sum_probs=77.6

Q ss_pred             CCCCCCCCCccccccccCCCcccCCCccccc---ccccCcCCCCcCCCcccCccchhhhhcccccccccC------CCCC
Q 013561           31 GLPTNKCFSPSLENVSRNSSLSYLPSSIRMT---THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELS------YPGL  101 (441)
Q Consensus        31 ~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~---~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~------~~~~  101 (441)
                      +..+++ +.+|++.+.++|+||++||||||+   +|+++|+++.  .+++.+..+++++++...+....-      ....
T Consensus         8 ~~~~~~-~~~a~~~~~~~~~~~~~~~rvc~~~~~l~~~~g~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (497)
T 2bry_A            8 HMASPA-STNPAHDHFETFVQAQLCQDVLSSFQGLCRALGVESG--GGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVY   84 (497)
T ss_dssp             --------CCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTCCTT--CHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGG
T ss_pred             hhcccc-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCCC--CCcEeehhhHHHHHHHHHHHhhhhhhhhhccccc
Confidence            467889 999999999999999999999998   7999999974  334444456666555332211110      0001


Q ss_pred             CCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          102 EATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       102 ~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ........++|+|||||++|+++|..|++.|++|+|||+.+.+.
T Consensus        85 ~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g  128 (497)
T 2bry_A           85 QQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFS  128 (497)
T ss_dssp             GGGTTTTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCC
T ss_pred             cCccccCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccC
Confidence            11123346799999999999999999999999999999987653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.60  E-value=5.3e-15  Score=138.43  Aligned_cols=213  Identities=15%  Similarity=0.110  Sum_probs=111.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccc-----------cchhhh-hhhhcC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVA-----------EPVSRI-QTSLSS  176 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~-----------~~~~~~-~~~~~~  176 (441)
                      ..+|+|||||++|+++|..|++.|.+|+|||+.......++.+..  +......+.           ..+... .+.+.+
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~   80 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPK--PPFPPGSLLERAYDPKDERVWAFHARAKYLLEG   80 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCC--SCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccc--cccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999998321101100000  000000000           011111 122333


Q ss_pred             CCCEEEEEEEEEEEeCCCCEE-EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHH
Q 013561          177 DPNSYFYLASCIGIDTDKHEV-YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRK  255 (441)
Q Consensus       177 ~~~v~~~~~~v~~id~~~~~v-~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~  255 (441)
                      ..++.++.++|++++.+++.+ .+...+ +        .++.+|+||+|+|...+....+|.............+..+.+
T Consensus        81 ~~gv~i~~~~v~~i~~~~~~v~~v~~~~-g--------~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~  151 (232)
T 2cul_A           81 LRPLHLFQATATGLLLEGNRVVGVRTWE-G--------PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLE  151 (232)
T ss_dssp             CTTEEEEECCEEEEEEETTEEEEEEETT-S--------CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHH
T ss_pred             CCCcEEEEeEEEEEEEeCCEEEEEEECC-C--------CEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCH
Confidence            347888878899988765554 233221 1        268999999999987655445565422212122222222333


Q ss_pred             HHHH-hcccccCCCCceeEe-eCceEEEEccCCcccC-CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHH
Q 013561          256 KLLL-NLMLSENPGDTVQLF-SKYFVITITLSFLVRL-SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVA  332 (441)
Q Consensus       256 ~i~~-~~~~a~~~G~~~vE~-a~~v~V~il~~~~~~l-G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A  332 (441)
                      .+.+ .+.+....+..-... ...-.+... .+...- +.+.++   +| ++|+|||+|||+ ..         .+...|
T Consensus       152 ~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~-~~~~~~~~~~~~~---~t-~~p~iya~G~~a-~~---------g~~~~~  216 (232)
T 2cul_A          152 DLSRLGFRFVEREGEVPETPSTPGYRVRYL-AFHPEEWEEKTFR---LK-RLEGLYAVGLCV-RE---------GDYARM  216 (232)
T ss_dssp             HHHHTTCCEEEEEEEEC-----CCEEEEEE-EECGGGEETTTTE---ET-TSBSEEECGGGT-SC---------CCHHHH
T ss_pred             HHHhCCCeEEccccccCcCCCCCCccCchh-hcccCCCCCcccc---cc-ccccceeeeecc-cC---------ccHHHH
Confidence            3221 111110000000000 000000000 000000 122222   24 899999999999 42         278889


Q ss_pred             HHHHHHHHHHHHHHh
Q 013561          333 ERQGKYLAELFNKKI  347 (441)
Q Consensus       333 ~~qg~~aA~nI~~~l  347 (441)
                      ++||+.+|.+|.+.|
T Consensus       217 ~~~g~~~a~~i~~~l  231 (232)
T 2cul_A          217 SEEGKRLAEHLLHEL  231 (232)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999998765

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.59  E-value=1.2e-16  Score=164.61  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      +++|+||||||+|+++|..|++.|  ++|+|||+.++++ ..+.+.........++    +......+.+..++.++.+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g-g~~~~g~~p~~~~~~~----~~~~~~~~~~~~gv~~~~~~   80 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF-GLVRFGVAPDHPEVKN----VINTFTQTARSDRCAFYGNV   80 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC-THHHHTSCTTCGGGGG----HHHHHHHHHTSTTEEEEBSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC-ceeecccCCCCccHHH----HHHHHHHHHHhCCcEEEeee
Confidence            579999999999999999999888  9999999998763 3222221111111111    11111112344677776553


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCcc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGVK  238 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~~  238 (441)
                      .+     .+.|.+.+            ..+.||+||||||+.| +.|++||.+
T Consensus        81 ~v-----~~~V~~~~------------~~~~~d~lVlAtGs~~~~~~~ipG~~  116 (460)
T 1cjc_A           81 EV-----GRDVTVQE------------LQDAYHAVVLSYGAEDHQALDIPGEE  116 (460)
T ss_dssp             CB-----TTTBCHHH------------HHHHSSEEEECCCCCEECCCCCTTTT
T ss_pred             EE-----eeEEEecc------------ceEEcCEEEEecCcCCCCCCCCCCCC
Confidence            22     12222221            2468999999999995 778899864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.58  E-value=2.7e-15  Score=154.50  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-C------CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-K------IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSY  181 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~------g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~  181 (441)
                      +++|+||||||||+++|..|.+ .      |++|+|||+.++++ ..+.+++..+....+++...+..    ..+..++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g-g~~~~gv~p~~~~~~~~~~~~~~----~~~~~~v~   77 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW-GLVRSGVAPDHPKIKSISKQFEK----TAEDPRFR   77 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS-THHHHTSCTTCTGGGGGHHHHHH----HHTSTTEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC-CccccccCCCCCCHHHHHHHHHH----HHhcCCCE
Confidence            5699999999999999999998 7      99999999998753 33333222111122222222222    23446788


Q ss_pred             EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC-cCCCCCCCcc
Q 013561          182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE-PLTFGIKGVK  238 (441)
Q Consensus       182 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~-p~~~~ipG~~  238 (441)
                      |+.+.  .+   .+.|.+.+            .++.||+||||||+. |+.+++||.+
T Consensus        78 ~~~~v--~v---~~~v~~~~------------~~~~~d~lViAtG~~~~~~~~ipG~~  118 (456)
T 1lqt_A           78 FFGNV--VV---GEHVQPGE------------LSERYDAVIYAVGAQSDRMLNIPGED  118 (456)
T ss_dssp             EEESC--CB---TTTBCHHH------------HHHHSSEEEECCCCCEECCCCCTTTT
T ss_pred             EEeeE--EE---CCEEEECC------------CeEeCCEEEEeeCCCCCCCCCCCCCC
Confidence            87652  12   12233222            257899999999997 6777888864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.55  E-value=5e-15  Score=151.89  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~  144 (441)
                      +.++|+|||||++|+++|..|++.|+  +|+|||+.+.+
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCC
Confidence            35799999999999999999999999  99999998654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.50  E-value=4.5e-14  Score=145.17  Aligned_cols=53  Identities=13%  Similarity=0.100  Sum_probs=39.3

Q ss_pred             CceeeCCCcccCC----CCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPS----VEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~----~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |+|.||+++|+..    .|+|||+|||....   |- ..|.+...|.+++++++..+.+..
T Consensus       392 g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~---g~-~~~~l~~~a~r~~~i~~~~~~~~~  448 (463)
T 3s5w_A          392 GDHEIGRDYRLQTDERCKVAIYAQGFSQASH---GL-SDTLLSVLPVRAEEISGSLYQHLK  448 (463)
T ss_dssp             C--CCCTTSBCCBCTTBCSEEEESSCCHHHH---CT-TTTSSTTHHHHHHHHHHHHHHHHC
T ss_pred             CCcccCcccccccCCCCCCeEEEcCCCcccC---Cc-CccchhHHHHHHHHHHHHHHhhcC
Confidence            7899999999844    45699999998643   22 356788999999999887776544

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.3e-16  Score=156.96  Aligned_cols=93  Identities=10%  Similarity=-0.039  Sum_probs=62.2

Q ss_pred             CCccccccccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECC
Q 013561           38 FSPSLENVSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGT  117 (441)
Q Consensus        38 ~~~a~~~~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGg  117 (441)
                      ..++.+...++|++...|.++|++.|..++...     |+.....+|.+++.-++. +..         ....+|+||||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~---------~~~~DV~IIGa   73 (326)
T 3fpz_A            9 STSASQLHLNSTPVTHCLSDIVKKEDWSDFKFA-----PIRESTVSRAMTSRYFKD-LDK---------FAVSDVIIVGA   73 (326)
T ss_dssp             -------CGGGSCCCCTTTTTCCSTTCTTCCCC-----CCCHHHHHHHHHHHHHHH-HHH---------TTEESEEEECC
T ss_pred             chhhhHHHhhcCCchhhhhhhcccccccccccC-----CccHHHHHHHHHHHHHhh-hhh---------ccCCCEEEECC
Confidence            677888888899999999999998776555432     222334556655532221 111         11458999999


Q ss_pred             CHHHHHHHHhhc--cCCCeEEEEcCCCCcc
Q 013561          118 GWGACRFLKGID--TKIYDAVCISPRNHMV  145 (441)
Q Consensus       118 G~aGl~aA~~L~--~~g~~Vtvie~~~~~~  145 (441)
                      |||||+||.+|+  +.|++|+|||+.++++
T Consensus        74 GPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           74 GSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             SHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            999999999996  4699999999998776

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.15  E-value=1.1e-10  Score=112.35  Aligned_cols=203  Identities=16%  Similarity=0.085  Sum_probs=109.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCcccccchh-----h---------h--hcCCCCcc--------cc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHMVFTPLLA-----S---------T--CVGTLEFR--------SV  163 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~~~~~ll~-----~---------~--~~g~~~~~--------~~  163 (441)
                      ..+|+|||||++|+++|..|++. |.+|+|||+.+.........     .         .  ..|.....        ..
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            35899999999999999999997 99999999987653110000     0         0  00111000        00


Q ss_pred             ccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEE---EEEec----CC-CCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          164 AEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEV---YCETV----NN-GKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       164 ~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v---~~~~~----~~-~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      ......+.+.+.+..++.++.+ +|++++.+.+.+   .+...    .. ++  ..++..++.+|.||+|+|..+.....
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g--~~g~~~~i~ad~VV~AtG~~s~~~~~  196 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQ--SCMDPNVMEAKIVVSSCGHDGPFGAT  196 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTS--SCCCCEEEEEEEEEECCCSSSTTTTH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcc--ccCceEEEECCEEEECCCCchHHHHH
Confidence            0001112222334467887765 788887665543   33210    00 00  00123478999999999987754322


Q ss_pred             CCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccc
Q 013561          235 KGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCA  314 (441)
Q Consensus       235 pG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a  314 (441)
                      .+.               +...+  .+.. ......++.+.            .. ..+.+|.. ++ ..|++|++||++
T Consensus       197 ~~~---------------~~~~~--g~~~-~v~~~~g~~~~------------~~-~~~~v~~~-~~-~~p~i~a~G~~~  243 (284)
T 1rp0_A          197 GVK---------------RLKSI--GMID-HVPGMKALDMN------------TA-EDAIVRLT-RE-VVPGMIVTGMEV  243 (284)
T ss_dssp             HHH---------------HHHHT--TSSS-CCCCCEEECHH------------HH-HHHHHHHC-EE-EETTEEECTHHH
T ss_pred             HHH---------------Hhhhc--cCCC-CcCCcCCchhh------------hh-hHHHhhcc-cc-ccCCEEEEeeeh
Confidence            111               00000  0000 00001111000            00 01223333 45 579999999997


Q ss_pred             cccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          315 GFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       315 ~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      ...+  |.+..-++...|+.+|+.+|.+|...|.
T Consensus       244 ~~~~--g~~~~gp~~~~~~~sG~~~a~~i~~~l~  275 (284)
T 1rp0_A          244 AEID--GAPRMGPTFGAMMISGQKAGQLALKALG  275 (284)
T ss_dssp             HHHH--TCEECCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhc--CCCCcChHHHHHHHhHHHHHHHHHHHhh
Confidence            5432  3222334667888999999999999885

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.09  E-value=3.3e-11  Score=121.83  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=40.8

Q ss_pred             Ccee---eC-CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIG---VD-EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~---Vd-~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |.|.   +| ++|+++.+|++|++|++..+....|+    =.-++|...|..|++++.
T Consensus       346 GGv~~~~~~~~tmes~~~~gly~~GE~ldv~g~~GG----ynlq~a~~sg~~ag~~~~  399 (401)
T 2gqf_A          346 GGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG----YNFQWAWSSAYACALSIS  399 (401)
T ss_dssp             EEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT----HHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCChhhccccCCCCEEEEEEeEEeccCCCC----HHHHHHHHHHHHHHHHHh
Confidence            5564   56 67898789999999999988666665    478899999999999875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.07  E-value=2.9e-11  Score=124.57  Aligned_cols=153  Identities=14%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc----ccchhhh----------------hcCCCCccccccchh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF----TPLLAST----------------CVGTLEFRSVAEPVS  168 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~----~~ll~~~----------------~~g~~~~~~~~~~~~  168 (441)
                      .++|+|||||+||+++|..|++.|++|+|||+++ ++-    .++.|..                ..|..  ........
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK--AKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE--CCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC--CCCCcCHH
Confidence            4689999999999999999999999999999987 210    0111110                00111  00001111


Q ss_pred             hh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC-
Q 013561          169 RI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG-  233 (441)
Q Consensus       169 ~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~-  233 (441)
                      .+              ...+.+..+++++.+++..++.  +.+.+. +           .+++||+||||||++|+.|+ 
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~-g-----------~~~~~d~lViATGs~p~~p~g  148 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP--KEVEVG-G-----------ERYGAKSLILATGSEPLELKG  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET-T-----------EEEEEEEEEECCCEEECCBTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC--CEEEEc-c-----------EEEEeCEEEEcCCCCCCCCCC
Confidence            11              0111223578888887766664  566553 1           27899999999999998885 


Q ss_pred             CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----ceEEEEc
Q 013561          234 IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----YFVITIT  283 (441)
Q Consensus       234 ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----~v~V~il  283 (441)
                      +||. +++   .+.+++.++.+.+...+.+.+ +|..|+|+|.     +.+|+++
T Consensus       149 i~~~-~~v---~~~~~~~~l~~~~~~~vvViG-gG~~g~e~A~~l~~~g~~Vtlv  198 (464)
T 2eq6_A          149 FPFG-EDV---WDSTRALKVEEGLPKRLLVIG-GGAVGLELGQVYRRLGAEVTLI  198 (464)
T ss_dssp             BCCS-SSE---ECHHHHTCGGGCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCC-CcE---EcHHHHHhhhhhcCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEE
Confidence            7772 222   255555444321112333444 6888888872     3566643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.07  E-value=3.2e-10  Score=119.81  Aligned_cols=102  Identities=9%  Similarity=-0.016  Sum_probs=72.2

Q ss_pred             CCCCCCccccc--cccCCCcccC-CCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCC-----
Q 013561           34 TNKCFSPSLEN--VSRNSSLSYL-PSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATK-----  105 (441)
Q Consensus        34 ~~~~~~~a~~~--~~~~~~~~~~-~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~-----  105 (441)
                      .++ |+++++.  ++++||||.+ |||+   +| ..|-++...+ +..+...++++.+.+++   ..|..+..+.     
T Consensus        43 H~~-~~~~~~~~~~~~~np~~~~~~g~v---~C-~~Ch~~~~~~-~~~c~~ch~~~~d~p~~---~~w~~~~~~~~~~~~  113 (572)
T 1d4d_A           43 HGD-LKELAAAAPKDKVSPHKSHLIGEI---AC-TSCHKGHEKS-VAYCDACHSFGFDMPFG---GKWERKFVPVDADKA  113 (572)
T ss_dssp             HCC-HHHHHHHCC---CBTTBSSCCSCC---CG-GGTSCSSSCC-CCGGGGTCCCCCCCTTC---CCCCCCCCCTTSSHH
T ss_pred             CCC-HHHhhhhccccccCCchhhcCCCC---Cc-ccccccccCC-CCcccccccccccCCCc---cccccCCccccccHH
Confidence            355 6777776  7899999999 6998   79 9999997544 45555566665554433   2333332221     


Q ss_pred             ---------CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          106 ---------PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       106 ---------~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                               .....+|+|||+|++|+++|..|++.|++|+|+|+.+..
T Consensus       114 ~~~~~~~~~~~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          114 AQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP  161 (572)
T ss_dssp             HHHHHHHSCCCEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred             HHHHHhhccCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence                     123468999999999999999999999999999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.04  E-value=2.6e-11  Score=126.06  Aligned_cols=166  Identities=12%  Similarity=0.099  Sum_probs=83.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhhh----------------hcCCC-----Cccccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAST----------------CVGTL-----EFRSVA  164 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~~----------------~~g~~-----~~~~~~  164 (441)
                      ..+|+|||||+||+++|..|++.|++|+|||+++..+   +..+.|..                ..|..     +...+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV   81 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHH
Confidence            3589999999999999999999999999999985211   00111110                00111     000000


Q ss_pred             cc----hhhh---hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCC--CCCCCCCcceeeCCEEEEcCCCCcCCCCCC
Q 013561          165 EP----VSRI---QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNG--KLSHEPHQFKVAYDKLVIAAGAEPLTFGIK  235 (441)
Q Consensus       165 ~~----~~~~---~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~--~~~~~~~~~~i~yD~LvlAtGs~p~~~~ip  235 (441)
                      ..    +..+   ...+.+..+++++.+++..++.  +.+.+.+....  .....++..++.||+||||||+.|+.|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~  159 (500)
T 1onf_A           82 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK  159 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBCCCSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCC
Confidence            00    0110   0011123578888877665543  45555320000  000000013689999999999999999999


Q ss_pred             CcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----ceEEEEc
Q 013561          236 GVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----YFVITIT  283 (441)
Q Consensus       236 G~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----~v~V~il  283 (441)
                      |.+ +++   +.+++..+..  ...+.+.+ +|..++|+|.     +.+|+++
T Consensus       160 G~~-~~~---~~~~~~~~~~--~~~vvViG-gG~ig~E~A~~l~~~g~~Vtlv  205 (500)
T 1onf_A          160 GIE-NTI---SSDEFFNIKE--SKKIGIVG-SGYIAVELINVIKRLGIDSYIF  205 (500)
T ss_dssp             TGG-GCE---EHHHHTTCCC--CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCC-ccc---CHHHHhccCC--CCeEEEEC-ChHHHHHHHHHHHHcCCeEEEE
Confidence            973 332   2333322221  12333344 6888888873     3566633

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.01  E-value=3.2e-09  Score=111.17  Aligned_cols=47  Identities=19%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             eeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       293 I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.+|++|||.+.+++|++||++-         +..-...|..+|-.+|+.|.+.+.
T Consensus       497 i~~~~~~~~~~~~gly~~GegaG---------~a~gi~~Aa~~G~~~a~~i~~~~~  543 (549)
T 3nlc_A          497 IKRGKDFQSVNLKGFYPAGEGAG---------YAGGILSAGIDGIKVAEAVARDIV  543 (549)
T ss_dssp             CCCTTTTSCTTCBTEEECHHHHT---------SCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCceECCcCCEEEccccCC---------hhhHHHHHHHHHHHHHHHHHHHhh
Confidence            78999999988999999999993         344567788999999999998885

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.00  E-value=1.7e-09  Score=111.60  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +|+|||||+||+++|..|++.|.+|+|+|+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4899999999999999999999999999997

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.97  E-value=8.8e-11  Score=120.72  Aligned_cols=145  Identities=12%  Similarity=0.071  Sum_probs=84.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh---------------h----cCCCCcccccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST---------------C----VGTLEFRSVAE  165 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~---------------~----~g~~~~~~~~~  165 (441)
                      .++|+||||||||+++|..|++.|++|+|||+. .++-.    ++.|..               .    .|... .....
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~   82 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISV-ASPRL   82 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCC-CCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCccc-CCCcc
Confidence            468999999999999999999999999999994 43210    111110               0    12211 00111


Q ss_pred             chhhhh--------------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          166 PVSRIQ--------------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       166 ~~~~~~--------------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      ....+.              ..+.+..+++++.+++..++  .+.+.+.+            .++.||+||||||++|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~~------------~~~~~d~lviATGs~p~~  148 (458)
T 1lvl_A           83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEVDG------------QRIQCEHLLLATGSSSVE  148 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEETT------------EEEECSEEEECCCEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEEee------------EEEEeCEEEEeCCCCCCC
Confidence            111110              01222357888887766665  35665532            278999999999999987


Q ss_pred             CC-CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561          232 FG-IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS  275 (441)
Q Consensus       232 ~~-ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a  275 (441)
                      |+ +|. +.   .+.+..++.++... ...+.+.+ +|..|+|+|
T Consensus       149 ~~~~~~-~~---~v~~~~~~~~~~~~-~~~vvViG-gG~~g~e~A  187 (458)
T 1lvl_A          149 LPMLPL-GG---PVISSTEALAPKAL-PQHLVVVG-GGYIGLELG  187 (458)
T ss_dssp             BTTBCC-BT---TEECHHHHTCCSSC-CSEEEEEC-CSHHHHHHH
T ss_pred             CCCCCc-cC---cEecHHHHhhhhcc-CCeEEEEC-cCHHHHHHH
Confidence            75 553 22   23344444332211 11233334 678888887

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.96  E-value=3e-10  Score=119.40  Aligned_cols=120  Identities=13%  Similarity=0.078  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch---hhhhcCC----C-------------------Cccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL---ASTCVGT----L-------------------EFRS  162 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll---~~~~~g~----~-------------------~~~~  162 (441)
                      ..+|+|||||++|+.+|..|++.|++|+|||+++.++.....   ++.....    .                   ...+
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            468999999999999999999999999999998765411000   0000000    0                   0001


Q ss_pred             cccchhhhhhhhcCCCCEEEEEEEEEEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCC--CCcCCCCCCCcc
Q 013561          163 VAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG--AEPLTFGIKGVK  238 (441)
Q Consensus       163 ~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG--s~p~~~~ipG~~  238 (441)
                      +...++...+.+.-...+. ...+|++++.+.+  .+.+...++         .++.||+||+|+|  +.|+.|++||.+
T Consensus       101 i~~yl~~~~~~~g~~~~i~-~~~~V~~i~~~~~~~~w~V~~~~G---------~~i~ad~lV~AtG~~s~p~~p~ipG~~  170 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIR-FDTRVTSAVLDEEGLRWTVRTDRG---------DEVSARFLVVAAGPLSNANTPAFDGLD  170 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEE-CSCCEEEEEEETTTTEEEEEETTC---------CEEEEEEEEECCCSEEECCCCCCTTGG
T ss_pred             HHHHHHHHHHHcCCCccEE-ECCEEEEEEEcCCCCEEEEEECCC---------CEEEeCEEEECcCCCCCCCCCCCCCcc
Confidence            1111112111110001222 2447888876554  444444221         3689999999999  789999999975

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.95  E-value=9.5e-11  Score=120.97  Aligned_cols=161  Identities=14%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccccc----chhh------------h-----hcCCCCccccccch
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTP----LLAS------------T-----CVGTLEFRSVAEPV  167 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~----ll~~------------~-----~~g~~~~~~~~~~~  167 (441)
                      .++|+|||||++|+++|..|++.|++|+|||+++.++...    +.|.            .     ..|...........
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            4589999999999999999999999999999976553110    0000            0     00110000000011


Q ss_pred             hh---------------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcce------eeCCEEEEcCC
Q 013561          168 SR---------------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFK------VAYDKLVIAAG  226 (441)
Q Consensus       168 ~~---------------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~------i~yD~LvlAtG  226 (441)
                      ..               +...+ +..++.++.+....+  +.+.+.+...+       ++..+      +.||+||+|||
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~~~--~~~~v~V~~~~-------G~~~~~~~~~~i~~d~lViAtG  154 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLF-KKNKVTYYKGNGSFE--DETKIRVTPVD-------GLEGTVKEDHILDVKNIIVATG  154 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESEEEES--SSSEEEEECCT-------TCTTCCSSCEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEEEc--cCCeEEEEecC-------CCcccccccceEEeCEEEECcC
Confidence            11               01112 235788887765543  44566655321       11124      89999999999


Q ss_pred             CCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----ceEEEEc
Q 013561          227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----YFVITIT  283 (441)
Q Consensus       227 s~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----~v~V~il  283 (441)
                      +.|+  .+||.+.....+.+..++..+.. ....+.+.+ +|..|+|+|.     +.+|+++
T Consensus       155 s~p~--~~~g~~~~~~~v~~~~~~~~~~~-~~~~vvViG-gG~~g~e~A~~l~~~g~~Vtlv  212 (478)
T 1v59_A          155 SEVT--PFPGIEIDEEKIVSSTGALSLKE-IPKRLTIIG-GGIIGLEMGSVYSRLGSKVTVV  212 (478)
T ss_dssp             EEEC--CCTTCCCCSSSEECHHHHTTCSS-CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCC--CCCCCCCCCceEEcHHHHHhhhc-cCceEEEEC-CCHHHHHHHHHHHHcCCEEEEE
Confidence            9884  35665311123445555544322 112233344 6888888872     3566643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.94  E-value=4.7e-10  Score=117.81  Aligned_cols=120  Identities=14%  Similarity=0.028  Sum_probs=69.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccc---hh-----------hhh--c----------CCCCccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPL---LA-----------STC--V----------GTLEFRS  162 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~l---l~-----------~~~--~----------g~~~~~~  162 (441)
                      ..+|+|||||++|+.+|..|++.|++|+|||+++.++.+..   .|           ...  .          ......+
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e   88 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE   88 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence            46899999999999999999999999999999876531100   00           000  0          0000111


Q ss_pred             cccchhhhhhhhcCCCCEEEEEEEEEEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCC--CCcCCCCCCCcc
Q 013561          163 VAEPVSRIQTSLSSDPNSYFYLASCIGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG--AEPLTFGIKGVK  238 (441)
Q Consensus       163 ~~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG--s~p~~~~ipG~~  238 (441)
                      +...++...+.+.-...+. ...+|++++.+.+  .+.+...+         ..++.||+||+|+|  +.|+.|++||.+
T Consensus        89 i~~yl~~~~~~~~l~~~i~-~~~~V~~~~~~~~~~~w~V~~~~---------G~~~~ad~lV~AtG~~s~p~~p~ipG~~  158 (545)
T 3uox_A           89 MLRYVNRAADAMDVRKHYR-FNTRVTAARYVENDRLWEVTLDN---------EEVVTCRFLISATGPLSASRMPDIKGID  158 (545)
T ss_dssp             HHHHHHHHHHHHTCGGGEE-CSCCEEEEEEEGGGTEEEEEETT---------TEEEEEEEEEECCCSCBC---CCCTTGG
T ss_pred             HHHHHHHHHHHcCCcCcEE-ECCEEEEEEEeCCCCEEEEEECC---------CCEEEeCEEEECcCCCCCCcCCCCCCcc
Confidence            1112222211111111222 2446777765443  44444321         13789999999999  889999999975

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.93  E-value=6.5e-09  Score=110.12  Aligned_cols=121  Identities=15%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC-Ccccccch------------hhh--hcCCC---------Ccc---
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN-HMVFTPLL------------AST--CVGTL---------EFR---  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~-~~~~~~ll------------~~~--~~g~~---------~~~---  161 (441)
                      ..+|+|||||+||++||..|++.|.+|+|||++. .+...++.            ..+  ..+..         .+.   
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~  107 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN  107 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence            4589999999999999999999999999999974 22211110            000  00100         000   


Q ss_pred             -----ccc--------cchhh-hhhhhcCCCCEEEEEEEEEEEeCCCCEE-EEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          162 -----SVA--------EPVSR-IQTSLSSDPNSYFYLASCIGIDTDKHEV-YCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       162 -----~~~--------~~~~~-~~~~~~~~~~v~~~~~~v~~id~~~~~v-~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                           .+.        ..+.. +.+.+.+..++.++.+.|+.+..+++.+ .+...+ +        ..+.+|+||+|||
T Consensus       108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~d-G--------~~I~Ad~VVLATG  178 (651)
T 3ces_A          108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQM-G--------LKFRAKAVVLTVG  178 (651)
T ss_dssp             TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETT-S--------EEEEEEEEEECCS
T ss_pred             cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECC-C--------CEEECCEEEEcCC
Confidence                 000        00111 1122333368888888999997655543 233211 1        3689999999999


Q ss_pred             CCcCCCCCCCcc
Q 013561          227 AEPLTFGIKGVK  238 (441)
Q Consensus       227 s~p~~~~ipG~~  238 (441)
                      +.++.+.++|..
T Consensus       179 t~s~~~~i~G~~  190 (651)
T 3ces_A          179 TFLDGKIHIGLD  190 (651)
T ss_dssp             TTTCCEEECC--
T ss_pred             CCccCccccCcc
Confidence            987766666653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.89  E-value=1.4e-09  Score=107.99  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            458999999999999999999999999999998755

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.88  E-value=1.9e-09  Score=112.98  Aligned_cols=121  Identities=11%  Similarity=0.012  Sum_probs=71.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhc-cCCCeEEEEcCCCCcccccch---hhh----hcCCCCc------------ccc---cc
Q 013561          109 KPRVVVLGTGWGACRFLKGID-TKIYDAVCISPRNHMVFTPLL---AST----CVGTLEF------------RSV---AE  165 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~-~~g~~Vtvie~~~~~~~~~ll---~~~----~~g~~~~------------~~~---~~  165 (441)
                      ..+|+|||||++|+++|..|+ +.|++|+|||+++.++.....   ++.    ......+            ...   ..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            458999999999999999999 999999999998765411100   000    0000000            000   00


Q ss_pred             chhhhhhhhcCCCCE---EEEEEEEEEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCC--CCcCCCCCCCcc
Q 013561          166 PVSRIQTSLSSDPNS---YFYLASCIGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG--AEPLTFGIKGVK  238 (441)
Q Consensus       166 ~~~~~~~~~~~~~~v---~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG--s~p~~~~ipG~~  238 (441)
                      .+........+..++   .....+|++++.+.+  .+.+...++         .++.||+||+|+|  +.|+.|++||.+
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G---------~~i~ad~lV~AtG~~s~p~~p~ipG~~  158 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG---------EVYRAKYVVNAVGLLSAINFPNLPGLD  158 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS---------CEEEEEEEEECCCSCCSBCCCCCTTGG
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC---------CEEEeCEEEECCcccccCCCCCCCCcc
Confidence            111111111111222   223457888876554  555544221         2689999999999  689999999975

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.86  E-value=1.6e-10  Score=121.09  Aligned_cols=166  Identities=13%  Similarity=0.049  Sum_probs=95.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC--------cccccchhhhh----------------------cCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH--------MVFTPLLASTC----------------------VGTLE  159 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~--------~~~~~ll~~~~----------------------~g~~~  159 (441)
                      .+|+||||||||+.+|.++++.|.+|+|||+...        ++ +.|++..|                      .|.. 
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lG-GtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~-  120 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIG-GTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK-  120 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSS-HHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE-
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCC-CcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc-
Confidence            4799999999999999999999999999997542        22 11211110                      1110 


Q ss_pred             ccccccchhhh-------h-------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          160 FRSVAEPVSRI-------Q-------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       160 ~~~~~~~~~~~-------~-------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                      .......+..+       .       ....+..++.++.+...-++.  +++.+......     ++.+.+.+|++||||
T Consensus       121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~-----~~~~~i~a~~iiIAT  193 (542)
T 4b1b_A          121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDL-----SKEETVTGKYILIAT  193 (542)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--C-----CCEEEEEEEEEEECC
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccC-----CceEEEeeeeEEecc
Confidence            01111111111       0       011223578888888777765  44544332110     123578999999999


Q ss_pred             CCCcCCCCCCCc-ccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeC-----ceEEE------EccCCccc
Q 013561          226 GAEPLTFGIKGV-KENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSK-----YFVIT------ITLSFLVR  289 (441)
Q Consensus       226 Gs~p~~~~ipG~-~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~-----~v~V~------il~~~~~~  289 (441)
                      |++|..|+.++. .+.++   +.+++..+.+. .+.+.+.+ +|+.|+|+|.     +.+|+      +|+.+|++
T Consensus       194 Gs~P~~P~~~~~~~~~~~---ts~~~l~l~~l-P~~lvIIG-gG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~e  264 (542)
T 4b1b_A          194 GCRPHIPDDVEGAKELSI---TSDDIFSLKKD-PGKTLVVG-ASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQ  264 (542)
T ss_dssp             CEEECCCSSSBTHHHHCB---CHHHHTTCSSC-CCSEEEEC-CSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHH
T ss_pred             CCCCCCCCcccCCCcccc---CchhhhccccC-CceEEEEC-CCHHHHHHHHHHHhcCCeEEEecccccccccchh
Confidence            999998854443 33332   33343333221 12344455 7999999983     34555      45555554

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.77  E-value=1.7e-09  Score=111.47  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+++
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4689999999999999999999999999999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.77  E-value=1.9e-09  Score=110.78  Aligned_cols=117  Identities=13%  Similarity=0.063  Sum_probs=72.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh----------------cCCC------Cccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC----------------VGTL------EFRS  162 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~----------------~g~~------~~~~  162 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+. .++-.    ++.|...                .|..      +...
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAK   83 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHH
Confidence            358999999999999999999999999999994 33210    0111000                0100      0000


Q ss_pred             ccc-------chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC-CCCC
Q 013561          163 VAE-------PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL-TFGI  234 (441)
Q Consensus       163 ~~~-------~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~-~~~i  234 (441)
                      +..       .+......+.+..++.++.+.+..++  .+.+.+...          ..++.||+||+|||+.|. .|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~~~~----------~~~~~~d~lviAtG~~p~~~p~i  151 (463)
T 4dna_A           84 LVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG--PNTVKLLAS----------GKTVTAERIVIAVGGHPSPHDAL  151 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTT----------TEEEEEEEEEECCCEEECCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEecC----------CeEEEeCEEEEecCCCcccCCCC
Confidence            000       00001111122246788888777665  356655211          137899999999999999 9999


Q ss_pred             CCcc
Q 013561          235 KGVK  238 (441)
Q Consensus       235 pG~~  238 (441)
                      ||.+
T Consensus       152 ~G~~  155 (463)
T 4dna_A          152 PGHE  155 (463)
T ss_dssp             TTGG
T ss_pred             CCcc
Confidence            9974

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.76  E-value=1.7e-09  Score=110.87  Aligned_cols=148  Identities=14%  Similarity=0.080  Sum_probs=84.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh---------------hcCCCCccccccchhhh
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST---------------CVGTLEFRSVAEPVSRI  170 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~---------------~~g~~~~~~~~~~~~~~  170 (441)
                      .+|+||||||||+++|..|++.|++|+|||+++.++..    .+.|..               ..|.. ..........+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~   80 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAK-VKGVELDLPAL   80 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEE-ECCEEECHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcc-cCCCccCHHHH
Confidence            47999999999999999999999999999998765311    111110               00110 00000111110


Q ss_pred             --------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561          171 --------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG  236 (441)
Q Consensus       171 --------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG  236 (441)
                                    ...+.+..+++++.+++..++  .+.+.+.. + +        .++.||+||||||++|+.|++||
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~-~-g--------~~~~~d~lviAtG~~p~~~~~~g  148 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLS--ERKVLVEE-T-G--------EELEARYILIATGSAPLIPPWAQ  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETT-T-C--------CEEEEEEEEECCCEEECCCTTBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCeEEEee-C-C--------EEEEecEEEECCCCCCCCCCCCC
Confidence                          001122246788887766544  45565542 1 1        37899999999999999998888


Q ss_pred             ccc-ccccccCHhHHHHHHHHHHHhcccccCCCCceeEee
Q 013561          237 VKE-NAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFS  275 (441)
Q Consensus       237 ~~~-~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a  275 (441)
                      .+. +++   +..++..+... ...+.+.+ +|..|+|+|
T Consensus       149 ~~~~~v~---~~~~~~~~~~~-~~~vvIiG-gG~~g~e~A  183 (455)
T 2yqu_A          149 VDYERVV---TSTEALSFPEV-PKRLIVVG-GGVIGLELG  183 (455)
T ss_dssp             CCSSSEE---CHHHHTCCSSC-CSEEEEEC-CSHHHHHHH
T ss_pred             CCcCcEe---chHHhhccccC-CCeEEEEC-CCHHHHHHH
Confidence            643 222   33333222110 11222333 567777776

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.73  E-value=1.2e-08  Score=107.09  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+++.++
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G   52 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG   52 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            4589999999999999999999999999999987653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.58  E-value=3.2e-08  Score=100.36  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~   62 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP   62 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3568999999999999999999999999999998865

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.52  E-value=2.1e-07  Score=96.25  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=71.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.-          . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~-~d~~~~~~l~~~---l~-~~gV~v~~~~~v  262 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG----------G-MDGEVAKQLQRM---LT-KQGIDFKLGAKV  262 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS----------S-SCHHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc----------c-CCHHHHHHHHHH---HH-hCCCEEEECCeE
Confidence            67999999999999999999999999999999886641          1 111222223332   22 346777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.+.+.+...+..    .++..++++|.||+|+|.+|+...
T Consensus       263 ~~i~~~~~~~~v~~~~~~----~g~~~~i~~D~Vi~a~G~~p~~~~  304 (491)
T 3urh_A          263 TGAVKSGDGAKVTFEPVK----GGEATTLDAEVVLIATGRKPSTDG  304 (491)
T ss_dssp             EEEEEETTEEEEEEEETT----SCCCEEEEESEEEECCCCEECCTT
T ss_pred             EEEEEeCCEEEEEEEecC----CCceEEEEcCEEEEeeCCccCCCc
Confidence            888766555443322100    012347899999999999988753

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.52  E-value=9.7e-08  Score=95.12  Aligned_cols=37  Identities=14%  Similarity=0.197  Sum_probs=33.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            3569999999999999999999999999999998755

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.51  E-value=3.2e-08  Score=102.46  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+||||||||+++|..|++.|++|+|||+++
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            589999999999999999999999999999975

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.51  E-value=2.3e-07  Score=92.77  Aligned_cols=100  Identities=22%  Similarity=0.304  Sum_probs=70.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|++|+++|..|++.|.+||++|+.+.+.-          ...+..+...+.+.   +. ..++.++.+ .+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~~~~~~~~~~l~~~---l~-~~gv~i~~~~~v  210 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP----------GLLHPAAAKAVQAG---LE-GLGVRFHLGPVL  210 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST----------TTSCHHHHHHHHHH---HH-TTTCEEEESCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh----------cccCHHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence            67999999999999999999999999999999886541          11111122223222   33 357777765 68


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+.+.+...++         .++++|.||+|+|.+|+.
T Consensus       211 ~~i~~~~~~~~v~~~~g---------~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          211 ASLKKAGEGLEAHLSDG---------EVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             EEEEEETTEEEEEETTS---------CEEEESEEEECSCEEECC
T ss_pred             EEEEecCCEEEEEECCC---------CEEECCEEEECcCCCcCH
Confidence            88876555555443211         378999999999998875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.51  E-value=6.3e-07  Score=93.82  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+++|+|||+|..|+++|..|++.+.+||+|++.+..
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQY  213 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            3789999999999999999999999999999999863

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.50  E-value=2.1e-07  Score=95.21  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=112.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|||+|+.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~gv~i~~~~~v  234 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL--S--------G-FEKQMAAIIKKR---LK-KKGVEVVTNALA  234 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--T--------T-SCHHHHHHHHHH---HH-HTTCEEEESEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc--c--------c-cCHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            5799999999999999999999999999999988654  1        1 111122222222   22 346777664 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+....+      ++..++++|.||+|+|.+|+...+. .++-                   .       
T Consensus       235 ~~i~~~~~~~~v~~~~~------g~~~~~~~D~vv~a~G~~p~~~~l~-~~~~-------------------g-------  281 (455)
T 1ebd_A          235 KGAEEREDGVTVTYEAN------GETKTIDADYVLVTVGRRPNTDELG-LEQI-------------------G-------  281 (455)
T ss_dssp             EEEEEETTEEEEEEEET------TEEEEEEESEEEECSCEEESCSSSS-TTTT-------------------T-------
T ss_pred             EEEEEeCCeEEEEEEeC------CceeEEEcCEEEECcCCCcccCcCC-hhhc-------------------C-------
Confidence            88876555444432100      1124789999999999998865321 1000                   0       


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                          +++            +.. |+|.||++||| +.|+|||+|||+.         .|+++..|++||+.+|+||.
T Consensus       282 ----~~~------------~~~-G~i~vd~~~~t-~~~~Iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~  331 (455)
T 1ebd_A          282 ----IKM------------TNR-GLIEVDQQCRT-SVPNIFAIGDIVP---------GPALAHKASYEGKVAAEAIA  331 (455)
T ss_dssp             ----CCB------------CTT-SCBCCCTTCBC-SSTTEEECGGGSS---------SCCCHHHHHHHHHHHHHHHT
T ss_pred             ----Ccc------------CCC-CCEeeCCCccc-CCCCEEEEeccCC---------CcccHHHHHHHHHHHHHHHc
Confidence                111            011 78999999999 9999999999992         36789999999999999997

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.48  E-value=1.8e-07  Score=95.42  Aligned_cols=96  Identities=17%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+++.           ...+.++...+.+.   +. ..++.++.+ .+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll-----------~~~d~~~~~~~~~~---l~-~~gV~i~~~~~v  211 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN-----------KLMDADMNQPILDE---LD-KREIPYRLNEEI  211 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS-----------TTSCGGGGHHHHHH---HH-HTTCCEEESCCE
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccc-----------ccccchhHHHHHHH---hh-ccceEEEeccEE
Confidence            5799999999999999999999999999999998664           11122233333333   22 246666554 67


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.  +.+.++++           +++++|.|++|+|.+|+..
T Consensus       212 ~~~~~--~~v~~~~g-----------~~~~~D~vl~a~G~~Pn~~  243 (437)
T 4eqs_A          212 NAING--NEITFKSG-----------KVEHYDMIIEGVGTHPNSK  243 (437)
T ss_dssp             EEEET--TEEEETTS-----------CEEECSEEEECCCEEESCG
T ss_pred             EEecC--CeeeecCC-----------eEEeeeeEEEEeceecCcH
Confidence            77764  45655442           3789999999999998764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.47  E-value=5.6e-06  Score=87.77  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=41.1

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCc-hHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPA-LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~-~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|| ++|++||+|||+... ..|...... ....|+-.|+.|++++.+++.
T Consensus       360 GGi~vd~~~~~-~IpGLyAaGe~a~~g-~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~~  416 (602)
T 1kf6_A          360 GGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRLAGEQATERAA  416 (602)
T ss_dssp             CEEECCTTSBC-SSBTEEECGGGEECS-SSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCCcc-ccCCEEEcccccccc-ccCCCCCccHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999 999999999997311 123222222 235677789999999987763

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.46  E-value=2.6e-07  Score=94.29  Aligned_cols=102  Identities=15%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|+++|+.+++.-.          ....++...+.+.   + +..++.++.+ .+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~---l-~~~gv~i~~~~~v  214 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV----------YLDKEFTDVLTEE---M-EANNITIATGETV  214 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------TCCHHHHHHHHHH---H-HTTTEEEEESCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc----------cCCHHHHHHHHHH---H-HhCCCEEEcCCEE
Confidence            679999999999999999999999999999998865410          0111122222222   2 3457888775 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .+++.+.+...+...  +        .++++|.||+|+|.+|+.+.+
T Consensus       215 ~~i~~~~~v~~v~~~--~--------~~i~~d~vi~a~G~~p~~~~~  251 (447)
T 1nhp_A          215 ERYEGDGRVQKVVTD--K--------NAYDADLVVVAVGVRPNTAWL  251 (447)
T ss_dssp             EEEECSSBCCEEEES--S--------CEEECSEEEECSCEEESCGGG
T ss_pred             EEEEccCcEEEEEEC--C--------CEEECCEEEECcCCCCChHHH
Confidence            888865332122221  1        278999999999999876533

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.46  E-value=2.6e-07  Score=97.54  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC-Ccccccc-----------h-hhh--hcCC---------CCc----
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN-HMVFTPL-----------L-AST--CVGT---------LEF----  160 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~-~~~~~~l-----------l-~~~--~~g~---------~~~----  160 (441)
                      ..+|+|||||+||++||..+++.|.+|+|||++. .+...++           + .++  ..|.         ..+    
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~  106 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN  106 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence            3589999999999999999999999999999974 2221111           0 000  0010         000    


Q ss_pred             ----cccc--------cch-hhhhhhhcCCCCEEEEEEEEEEEeCCCCEEE-EEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          161 ----RSVA--------EPV-SRIQTSLSSDPNSYFYLASCIGIDTDKHEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       161 ----~~~~--------~~~-~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                          ..+.        ..+ ..+.+.+.+..++.++.+.|+++..+++.+. +...+ +        ..+.+|+||+|||
T Consensus       107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~d-G--------~~i~AdaVVLATG  177 (637)
T 2zxi_A          107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNL-G--------VEYKTKAVVVTTG  177 (637)
T ss_dssp             TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETT-S--------CEEECSEEEECCT
T ss_pred             cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECC-C--------cEEEeCEEEEccC
Confidence                0000        001 1111223333688888889999876655442 33221 1        3789999999999


Q ss_pred             CCcCCCCCCCc
Q 013561          227 AEPLTFGIKGV  237 (441)
Q Consensus       227 s~p~~~~ipG~  237 (441)
                      ..++.+.++|.
T Consensus       178 ~~s~~~~~~G~  188 (637)
T 2zxi_A          178 TFLNGVIYIGD  188 (637)
T ss_dssp             TCBTCEEEETT
T ss_pred             CCccCceeccc
Confidence            88766655554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.43  E-value=2.3e-07  Score=95.19  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~gv~i~~~~~v  235 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL--P--------N-EDADVSKEIEKQ---FK-KLGVTILTATKV  235 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------T-SCHHHHHHHHHH---HH-HHTCEEECSCEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc--c--------c-cCHHHHHHHHHH---HH-HcCCEEEeCcEE
Confidence            5799999999999999999999999999999998654  1        1 111122222222   22 246777664 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++.+.+.+.+....+      ++..++++|.||+|+|.+|+...
T Consensus       236 ~~i~~~~~~~~v~~~~~------g~~~~~~~D~vv~a~G~~p~~~~  275 (464)
T 2a8x_A          236 ESIADGGSQVTVTVTKD------GVAQELKAEKVLQAIGFAPNVEG  275 (464)
T ss_dssp             EEEEECSSCEEEEEESS------SCEEEEEESEEEECSCEEECCSS
T ss_pred             EEEEEcCCeEEEEEEcC------CceEEEEcCEEEECCCCCccCCC
Confidence            88876554344332101      12247899999999999988653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.43  E-value=3.2e-07  Score=92.58  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.-          ...+..+...+.+.   +. ..++.++.+ .+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~---l~-~~GV~i~~~~~v  210 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS----------RAAPATLADFVARY---HA-AQGVDLRFERSV  210 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST----------TTSCHHHHHHHHHH---HH-HTTCEEEESCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc----------cccCHHHHHHHHHH---HH-HcCcEEEeCCEE
Confidence            67999999999999999999999999999999886541          00111122222222   22 347777766 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++ ++ .+.+.++           .++++|.||+|+|.+|+.
T Consensus       211 ~~i~-~~-~v~~~~g-----------~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          211 TGSV-DG-VVLLDDG-----------TRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             EEEE-TT-EEEETTS-----------CEEECSEEEECSCEEECC
T ss_pred             EEEE-CC-EEEECCC-----------CEEEcCEEEECcCCCccH
Confidence            8888 33 5655331           378999999999998875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.43  E-value=1.7e-07  Score=96.63  Aligned_cols=104  Identities=12%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+++.  +        . .+.++...+.+.   + +..++.++.+ .+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---l-~~~gV~i~~~~~v  249 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM--Q--------G-ADRDLVKVWQKQ---N-EYRFDNIMVNTKT  249 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS--T--------T-SCHHHHHHHHHH---H-GGGEEEEECSCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc--c--------c-cCHHHHHHHHHH---H-HhcCCEEEECCEE
Confidence            6799999999999999999999999999999998654  1        1 111222223332   2 2357887765 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+.+.+.+...+.+     ++..++++|.||+|+|.+|+..
T Consensus       250 ~~i~~~~~~~~v~~~~~~-----~~g~~~~~D~vv~a~G~~p~~~  289 (482)
T 1ojt_A          250 VAVEPKEDGVYVTFEGAN-----APKEPQRYDAVLVAAGRAPNGK  289 (482)
T ss_dssp             EEEEEETTEEEEEEESSS-----CCSSCEEESCEEECCCEEECGG
T ss_pred             EEEEEcCCeEEEEEeccC-----CCceEEEcCEEEECcCCCcCCC
Confidence            888765544433321100     0013678999999999998764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.42  E-value=3e-07  Score=94.58  Aligned_cols=164  Identities=20%  Similarity=0.251  Sum_probs=112.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.-.          ..+.++...+.+.   +. ..++.++.+ .+
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~---l~-~~Gv~i~~~~~v  243 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV----------GIDMEISKNFQRI---LQ-KQGFKFKLNTKV  243 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS----------SCCHHHHHHHHHH---HH-HTTCEEECSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc----------ccCHHHHHHHHHH---HH-HCCCEEEeCceE
Confidence            579999999999999999999999999999998865410          0111122222222   22 346777664 78


Q ss_pred             EEEeCCCCE-EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          188 IGIDTDKHE-VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       188 ~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      .+++.+.+. +.+.....    ..++..++++|.||+|+|.+|+...+ +.+                 ..  .+.    
T Consensus       244 ~~i~~~~~~~~~v~~~~~----~~~~~~~i~~D~vv~a~G~~p~~~~l-~l~-----------------~~--g~~----  295 (474)
T 1zmd_A          244 TGATKKSDGKIDVSIEAA----SGGKAEVITCDVLLVCIGRRPFTKNL-GLE-----------------EL--GIE----  295 (474)
T ss_dssp             EEEEECTTSCEEEEEEET----TSCCCEEEEESEEEECSCEEECCTTS-SHH-----------------HH--TCC----
T ss_pred             EEEEEcCCceEEEEEEec----CCCCceEEEcCEEEECcCCCcCCCcC-Cch-----------------hc--CCc----
Confidence            888765533 44331100    00112478999999999999876422 110                 00  011    


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                             +            +.. |+|.||++||| +.|+|||+|||+.         .|++++.|++||+.+|.||.
T Consensus       296 -------~------------~~~-G~i~vd~~~~t-~~~~IyA~GD~~~---------~~~~~~~A~~~g~~aa~~i~  343 (474)
T 1zmd_A          296 -------L------------DPR-GRIPVNTRFQT-KIPNIYAIGDVVA---------GPMLAHKAEDEGIICVEGMA  343 (474)
T ss_dssp             -------C------------CTT-SCCCCCTTCBC-SSTTEEECGGGSS---------SCCCHHHHHHHHHHHHHHHT
T ss_pred             -------c------------CCC-CCEEECcCCcc-CCCCEEEeeecCC---------CCccHHHHHHHHHHHHHHhc
Confidence                   0            111 78999999999 9999999999992         36789999999999999997

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.42  E-value=3.1e-07  Score=94.28  Aligned_cols=159  Identities=17%  Similarity=0.277  Sum_probs=111.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.-          ..+ ..+...+.+.   +. ..++.++.+ .+
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~----------~~~-~~~~~~l~~~---l~-~~gv~i~~~~~v  230 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF----------QFD-PLLSATLAEN---MH-AQGIETHLEFAV  230 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------TSC-HHHHHHHHHH---HH-HTTCEEESSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc----------ccC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            57999999999999999999999999999999876541          111 1122222222   22 246777655 68


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+...+       +++ ++++|.||+|+|.+|+...+. .+                 ..  .+.     
T Consensus       231 ~~i~~~~~~~~v~~~~-------G~~-~i~~D~vv~a~G~~p~~~~l~-~~-----------------~~--g~~-----  277 (463)
T 2r9z_A          231 AALERDAQGTTLVAQD-------GTR-LEGFDSVIWAVGRAPNTRDLG-LE-----------------AA--GIE-----  277 (463)
T ss_dssp             EEEEEETTEEEEEETT-------CCE-EEEESEEEECSCEEESCTTSC-HH-----------------HH--TCC-----
T ss_pred             EEEEEeCCeEEEEEeC-------CcE-EEEcCEEEECCCCCcCCCCCC-ch-----------------hc--CCc-----
Confidence            8887654444444321       111 689999999999998764221 10                 00  111     


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                            +            +.. |+|.||+++|| +.|+|||+|||+      +   .++++..|++||+.+|.||.
T Consensus       278 ------~------------~~~-G~i~vd~~~~t-~~~~Iya~GD~~------~---~~~~~~~A~~~g~~aa~~i~  325 (463)
T 2r9z_A          278 ------V------------QSN-GMVPTDAYQNT-NVPGVYALGDIT------G---RDQLTPVAIAAGRRLAERLF  325 (463)
T ss_dssp             ------C------------CTT-SCCCCCTTSBC-SSTTEEECGGGG------T---SCCCHHHHHHHHHHHHHHHH
T ss_pred             ------c------------CCC-CCEeECCCCcc-CCCCEEEEeecC------C---CcccHHHHHHHHHHHHHHHc
Confidence                  0            111 78999999999 999999999998      2   36789999999999999997

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.41  E-value=6.6e-07  Score=91.46  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||+|+.|+++|..|++.|.+||++++.+++.-          ...+.++...+.+.   + +..++.++.+ .|
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~d~~~~~~l~~~---l-~~~GV~i~~~~~v  212 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP----------KYFDKEMVAEVQKS---L-EKQAVIFHFEETV  212 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST----------TTCCHHHHHHHHHH---H-HTTTEEEEETCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc----------ccCCHHHHHHHHHH---H-HHcCCEEEeCCEE
Confidence            67999999999999999999999999999999886541          10111222223332   2 3457888764 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .+++..++.+.+...+          .++++|.||+|+|.+|+...+
T Consensus       213 ~~i~~~~~~v~v~~~~----------g~i~aD~Vv~A~G~~p~~~~l  249 (452)
T 3oc4_A          213 LGIEETANGIVLETSE----------QEISCDSGIFALNLHPQLAYL  249 (452)
T ss_dssp             EEEEECSSCEEEEESS----------CEEEESEEEECSCCBCCCSSC
T ss_pred             EEEEccCCeEEEEECC----------CEEEeCEEEECcCCCCChHHH
Confidence            8887555555444311          178999999999999987643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.41  E-value=2.9e-07  Score=97.53  Aligned_cols=115  Identities=14%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC-Ccccccc------------hhhh--hcCCC---------Ccc---
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN-HMVFTPL------------LAST--CVGTL---------EFR---  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~-~~~~~~l------------l~~~--~~g~~---------~~~---  161 (441)
                      ..+|+|||||+||+++|..|++.|.+|+|||+.+ .+...++            +..+  ..+..         .+.   
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~  100 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN  100 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence            4689999999999999999999999999999974 2221111            0000  00100         000   


Q ss_pred             -----cc-----cc---ch-hhhhhhhcCCCCEEEEEEEEEEEeCCCCEEE-EEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          162 -----SV-----AE---PV-SRIQTSLSSDPNSYFYLASCIGIDTDKHEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       162 -----~~-----~~---~~-~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                           ..     ..   .+ ..+.+.+.+.+++.++.+.|+.+..+++.+. +...+ +        ..+.+|+||+|||
T Consensus       101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~-G--------~~i~Ad~VVLATG  171 (641)
T 3cp8_A          101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRS-G--------RAIQAKAAILACG  171 (641)
T ss_dssp             SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETT-S--------CEEEEEEEEECCT
T ss_pred             cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECC-C--------cEEEeCEEEECcC
Confidence                 00     00   01 1111223344588888888988876666654 33321 1        3789999999999


Q ss_pred             CCcCCC
Q 013561          227 AEPLTF  232 (441)
Q Consensus       227 s~p~~~  232 (441)
                      ..++.+
T Consensus       172 ~~s~~~  177 (641)
T 3cp8_A          172 TFLNGL  177 (641)
T ss_dssp             TCBTCE
T ss_pred             CCCCcc
Confidence            875533

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.41  E-value=3.3e-07  Score=94.90  Aligned_cols=156  Identities=19%  Similarity=0.292  Sum_probs=113.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++.+ .|
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~GV~i~~~~~V  246 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL--P--------YED-ADAALVLEES---FA-ERGVRLFKNARA  246 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS--C--------CSS-HHHHHHHHHH---HH-HTTCEEETTCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--c--------ccC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            5799999999999999999999999999999988654  1        111 1222223332   22 347777655 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC--CCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG--IKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~--ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .+++.+.+.+.+...+         ..++++|.||+|+|.+|+...  ++..                            
T Consensus       247 ~~i~~~~~~v~v~~~~---------g~~i~aD~Vv~a~G~~p~~~~l~l~~~----------------------------  289 (499)
T 1xdi_A          247 ASVTRTGAGVLVTMTD---------GRTVEGSHALMTIGSVPNTSGLGLERV----------------------------  289 (499)
T ss_dssp             EEEEECSSSEEEEETT---------SCEEEESEEEECCCEEECCSSSCTTTT----------------------------
T ss_pred             EEEEEeCCEEEEEECC---------CcEEEcCEEEECCCCCcCCCcCCchhc----------------------------
Confidence            8887665445555321         137899999999999988643  2211                            


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                        |   +++            +.. |+|.||++||| +.|+|||+|||+.         .++++..|++||+++|+||.
T Consensus       290 --g---l~~------------~~~-G~i~Vd~~~~t-~~~~IyA~GD~~~---------~~~l~~~A~~~g~~aa~~i~  340 (499)
T 1xdi_A          290 --G---IQL------------GRG-NYLTVDRVSRT-LATGIYAAGDCTG---------LLPLASVAAMQGRIAMYHAL  340 (499)
T ss_dssp             --T---CCC------------BTT-TBCCCCSSSBC-SSTTEEECSGGGT---------SCSCHHHHHHHHHHHHHHHT
T ss_pred             --C---ceE------------CCC-CCEEECCCccc-CCCCEEEEeccCC---------CcccHHHHHHHHHHHHHHhc
Confidence              0   111            111 78999999999 9999999999992         35789999999999999997

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.41  E-value=5.6e-07  Score=92.62  Aligned_cols=164  Identities=18%  Similarity=0.139  Sum_probs=112.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~d~~~~~~~~~~---l~-~~gv~i~~~~~v  251 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL--R--------S-FDSMISTNCTEE---LE-NAGVEVLKFSQV  251 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--T--------T-SCHHHHHHHHHH---HH-HTTCEEETTEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc--c--------c-cCHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            6799999999999999999999999999999988654  1        1 111222223222   22 346777654 67


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCc--ceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQ--FKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~--~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      .+++...+  .+.+...+.+    .++.  .++++|.||+|+|.+|+...+.-.                      .   
T Consensus       252 ~~i~~~~~~~~~~v~~~~~~----~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~----------------------~---  302 (478)
T 3dk9_A          252 KEVKKTLSGLEVSMVTAVPG----RLPVMTMIPDVDCLLWAIGRVPNTKDLSLN----------------------K---  302 (478)
T ss_dssp             EEEEECSSSEEEEEEECCTT----SCCEEEEEEEESEEEECSCEEESCTTSCGG----------------------G---
T ss_pred             EEEEEcCCCcEEEEEEccCC----CCcccceEEEcCEEEEeeccccCCCCCCch----------------------h---
Confidence            88875433  2444332110    0111  478999999999999876532100                      0   


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                      .      ++++            +.. |+|.||+++|| +.|+|||+|||+         ..|.++..|+.||+.+|+||
T Consensus       303 ~------g~~~------------~~~-G~i~vd~~~~t-~~~~IyA~GD~~---------~~~~~~~~A~~~g~~aa~~i  353 (478)
T 3dk9_A          303 L------GIQT------------DDK-GHIIVDEFQNT-NVKGIYAVGDVC---------GKALLTPVAIAAGRKLAHRL  353 (478)
T ss_dssp             G------TCCB------------CTT-CCBCCCTTCBC-SSTTEEECGGGG---------CSSCCHHHHHHHHHHHHHHH
T ss_pred             c------CCee------------CCC-CCEeeCCCccc-CCCCEEEEEecC---------CCCccHhHHHHHHHHHHHHH
Confidence            0      0111            111 78999999999 999999999999         24789999999999999999


Q ss_pred             HH
Q 013561          344 NK  345 (441)
Q Consensus       344 ~~  345 (441)
                      ..
T Consensus       354 ~~  355 (478)
T 3dk9_A          354 FE  355 (478)
T ss_dssp             HS
T ss_pred             cC
Confidence            83

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.40  E-value=3.7e-07  Score=94.55  Aligned_cols=100  Identities=15%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC---CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK---IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++|+|||||+.|+++|..|++.   |.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++.+
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~GV~i~~~  255 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL--R--------GFD-ETIREEVTKQ---LT-ANGIEIMTN  255 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC--T--------TSC-HHHHHHHHHH---HH-HTTCEEEES
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc--c--------ccC-HHHHHHHHHH---HH-hCCCEEEeC
Confidence            67999999999999999999998   99999999988654  1        111 1122223222   22 347777765


Q ss_pred             -EEEEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          186 -SCIGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       186 -~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                       .|.+++.+. +.+.+...+ +        .++++|.||+|+|.+|+..
T Consensus       256 ~~v~~i~~~~~~~~~v~~~~-G--------~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          256 ENPAKVSLNTDGSKHVTFES-G--------KTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             CCEEEEEECTTSCEEEEETT-S--------CEEEESEEEECSCEEECCG
T ss_pred             CEEEEEEEcCCceEEEEECC-C--------cEEEcCEEEECCCCccccc
Confidence             788887653 223333211 1        2789999999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.40  E-value=4.1e-07  Score=94.08  Aligned_cols=100  Identities=11%  Similarity=0.125  Sum_probs=69.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC---CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK---IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~---g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++|+|||||+.|+++|..|++.   |.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++.+
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~GV~i~~~  251 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--R--------GFD-SELRKQLTEQ---LR-ANGINVRTH  251 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--T--------TSC-HHHHHHHHHH---HH-HTTEEEEET
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc--c--------ccC-HHHHHHHHHH---HH-hCCCEEEeC
Confidence            67999999999999999999998   99999999998654  1        111 1122223222   22 357888766


Q ss_pred             -EEEEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          186 -SCIGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       186 -~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                       .|.+++.+.+ .+.+...+ +        .++++|.||+|+|.+|+..
T Consensus       252 ~~v~~i~~~~~~~~~v~~~~-G--------~~i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          252 ENPAKVTKNADGTRHVVFES-G--------AEADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             CCEEEEEECTTSCEEEEETT-S--------CEEEESEEEECSCEEESCT
T ss_pred             CEEEEEEEcCCCEEEEEECC-C--------cEEEcCEEEEccCCCcCcc
Confidence             7888876532 23333321 1        2789999999999998874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.39  E-value=3.2e-07  Score=93.77  Aligned_cols=158  Identities=20%  Similarity=0.255  Sum_probs=110.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|+|+|+.+++.  +        ..+ ..+...+.+.   +. ..++.++.+ .+
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~~~-~~~~~~l~~~---l~-~~Gv~i~~~~~v  231 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL--P--------SFD-PMISETLVEV---MN-AEGPQLHTNAIP  231 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------TSC-HHHHHHHHHH---HH-HHSCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh--h--------hhh-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            6799999999999999999999999999999987654  1        111 1122222222   22 246777665 68


Q ss_pred             EEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          188 IGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       188 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      .+++.+. ..+.+...+ +        .++++|.||+|+|.+|+...+ +.+                 ..  .+     
T Consensus       232 ~~i~~~~~~~~~v~~~~-g--------~~i~~D~vv~a~G~~p~~~~l-~~~-----------------~~--gl-----  277 (450)
T 1ges_A          232 KAVVKNTDGSLTLELED-G--------RSETVDCLIWAIGREPANDNI-NLE-----------------AA--GV-----  277 (450)
T ss_dssp             EEEEECTTSCEEEEETT-S--------CEEEESEEEECSCEEESCTTS-CHH-----------------HH--TC-----
T ss_pred             EEEEEeCCcEEEEEECC-C--------cEEEcCEEEECCCCCcCCCCC-Cch-----------------hc--Cc-----
Confidence            8887643 223333211 1        278999999999999876422 110                 00  11     


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                            ++            +.. |+|.||+++|| +.|+|||+|||+      +   .++++..|++||+.+|.||.
T Consensus       278 ------~~------------~~~-g~i~vd~~~~t-~~~~IyA~GD~~------~---~~~~~~~A~~~g~~aa~~i~  326 (450)
T 1ges_A          278 ------KT------------NEK-GYIVVDKYQNT-NIEGIYAVGDNT------G---AVELTPVAVAAGRRLSERLF  326 (450)
T ss_dssp             ------CB------------CTT-SCBCCCTTSBC-SSTTEEECSGGG------T---SCCCHHHHHHHHHHHHHHHH
T ss_pred             ------eE------------CCC-CCEeECCCCcc-CCCCEEEEeccC------C---CCccHHHHHHHHHHHHHHHc
Confidence                  11            111 78999999999 999999999998      2   36789999999999999997

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.38  E-value=2e-07  Score=85.76  Aligned_cols=36  Identities=8%  Similarity=0.065  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+|+|||||||||+||..|++.|++|+|||+++.++
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            579999999999999999999999999999998764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.38  E-value=4e-07  Score=93.47  Aligned_cols=164  Identities=22%  Similarity=0.298  Sum_probs=112.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +.+..++.++.+ .+
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~d~~~~~~l~~~---l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA--P--------T-LDEDVTNALVGA---LAKNEKMKFMTSTKV  239 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------T-SCHHHHHHHHHH---HHHHTCCEEECSCEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc--c--------c-CCHHHHHHHHHH---HhhcCCcEEEeCCEE
Confidence            6799999999999999999999999999999998654  1        1 111222223332   302347777764 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+.....+     ++..++++|.||+|+|.+|+...+ +.+                 ..  .+.     
T Consensus       240 ~~i~~~~~~~~v~~~~~~-----g~~~~i~~D~vv~a~G~~p~~~~l-~l~-----------------~~--gl~-----  289 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGKN-----GKRETVTCEALLVSVGRRPFTGGL-GLD-----------------KI--NVA-----  289 (468)
T ss_dssp             EEEEECSSSEEEEEECC--------EEEEEESEEEECSCEEECCTTS-CHH-----------------HH--TCC-----
T ss_pred             EEEEEcCCeEEEEEEcCC-----CceEEEECCEEEECCCcccCCCCC-Cch-----------------hc--CCc-----
Confidence            888765543333321000     112478999999999999876422 110                 00  111     


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                            +            +.. |+|.||+++|| +.|+|||+|||+..        .|+++..|++||+.+|.||.
T Consensus       290 ------~------------~~~-G~i~vd~~~~t-~~~~IyA~GD~~~~--------~~~~~~~A~~~g~~aa~~i~  338 (468)
T 2qae_A          290 ------K------------NER-GFVKIGDHFET-SIPDVYAIGDVVDK--------GPMLAHKAEDEGVACAEILA  338 (468)
T ss_dssp             ------B------------CTT-SCBCCCTTSBC-SSTTEEECGGGBSS--------SCSCHHHHHHHHHHHHHHHT
T ss_pred             ------c------------CCC-CCEeECCCccc-CCCCEEEeeccCCC--------CCccHhHHHHHHHHHHHHHc
Confidence                  1            111 78999999999 99999999999921        46799999999999999997

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.38  E-value=2.5e-07  Score=94.95  Aligned_cols=159  Identities=24%  Similarity=0.301  Sum_probs=112.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~--------~-~~~~~~~~l~~~---l~-~~gv~i~~~~~v  241 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV--P--------T-MDAEIRKQFQRS---LE-KQGMKFKLKTKV  241 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS--T--------T-SCHHHHHHHHHH---HH-HSSCCEECSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc--c--------c-ccHHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence            6799999999999999999999999999999998654  1        1 111122222222   22 346777654 78


Q ss_pred             EEEeCCCCEEE--EEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC--CCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          188 IGIDTDKHEVY--CETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI--KGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       188 ~~id~~~~~v~--~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i--pG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      .+++.+.+.+.  +.+..+      ++..++++|.||+|+|.+|+...+  ...                          
T Consensus       242 ~~i~~~~~~~~v~~~~~~~------g~~~~~~~D~vv~a~G~~p~~~~l~~~~~--------------------------  289 (470)
T 1dxl_A          242 VGVDTSGDGVKLTVEPSAG------GEQTIIEADVVLVSAGRTPFTSGLNLDKI--------------------------  289 (470)
T ss_dssp             EEEECSSSSEEEEEEESSS------CCCEEEEESEEECCCCEEECCTTSCCTTT--------------------------
T ss_pred             EEEEEcCCeEEEEEEecCC------CcceEEECCEEEECCCCCcCCCCCCchhc--------------------------
Confidence            88887654333  332101      112478999999999999876532  111                          


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                             ++++            +.. |+|.||++||| +.|+|||+|||+.         .++++..|++||+.+|.||
T Consensus       290 -------gl~~------------~~~-G~i~vd~~~~t-~~~~Iya~GD~~~---------~~~~~~~A~~~g~~aa~~i  339 (470)
T 1dxl_A          290 -------GVET------------DKL-GRILVNERFST-NVSGVYAIGDVIP---------GPMLAHKAEEDGVACVEYL  339 (470)
T ss_dssp             -------TCCB------------CSS-SCBCCCTTCBC-SSTTEEECSTTSS---------SCCCHHHHHHHHHHHHHHH
T ss_pred             -------CCcc------------CCC-CCEeECcCCcc-CCCCEEEEeccCC---------CCccHHHHHHHHHHHHHHH
Confidence                   0111            011 78999999999 9999999999992         3678999999999999999


Q ss_pred             H
Q 013561          344 N  344 (441)
Q Consensus       344 ~  344 (441)
                      .
T Consensus       340 ~  340 (470)
T 1dxl_A          340 A  340 (470)
T ss_dssp             T
T ss_pred             c
Confidence            7

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.38  E-value=6.6e-07  Score=92.49  Aligned_cols=100  Identities=15%  Similarity=0.177  Sum_probs=68.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.-          ...+.++...+.+.   +. ..++.++.+ .+
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~---l~-~~GV~i~~~~~v  259 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA----------GYYDRDLTDLMAKN---ME-EHGIQLAFGETV  259 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT----------TTSCHHHHHHHHHH---HH-TTTCEEEETCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh----------hHHHHHHHHHHHHH---HH-hCCeEEEeCCEE
Confidence            67999999999999999999999999999999886541          01111222222222   33 357887765 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+.+...+.. + +        .++++|.||+|+|.+|+..
T Consensus       260 ~~i~~~~~v~~v~~-~-g--------~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          260 KEVAGNGKVEKIIT-D-K--------NEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             EEEECSSSCCEEEE-S-S--------CEEECSEEEECCCEEECCG
T ss_pred             EEEEcCCcEEEEEE-C-C--------cEEECCEEEECCCCCcChH
Confidence            88876432211222 1 1        3789999999999998765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.36  E-value=7.9e-07  Score=89.14  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=34.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ++..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   61 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR   61 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence            34569999999999999999999999999999998643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.35  E-value=2.2e-06  Score=83.13  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=114.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||+|+.|+++|..|++.|.+|+++++.+.+...             .    .+.+   .+.+..++.++.+ .+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~----~~~~---~l~~~~gv~i~~~~~v  211 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN-------------K----VAQA---RAFANPKMKFIWDTAV  211 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC-------------H----HHHH---HHHTCTTEEEECSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcc-------------h----HHHH---HHHhcCCceEecCCce
Confidence            579999999999999999999999999999998754310             0    1111   1333457887654 78


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .+++.+.+  .+.+.+..+      +++.++++|.||+|+|.+|+...+...                       +    
T Consensus       212 ~~i~~~~~v~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~l~~~-----------------------~----  258 (325)
T 2q7v_A          212 EEIQGADSVSGVKLRNLKT------GEVSELATDGVFIFIGHVPNTAFVKDT-----------------------V----  258 (325)
T ss_dssp             EEEEESSSEEEEEEEETTT------CCEEEEECSEEEECSCEEESCGGGTTT-----------------------S----
T ss_pred             EEEccCCcEEEEEEEECCC------CcEEEEEcCEEEEccCCCCChHHHhhh-----------------------c----
Confidence            88876543  455553211      223478999999999998875322110                       0    


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                             +            ++.. |+|.||+++|| +.|+|||+|||+..        .|+++..|++||+.+|.||.+
T Consensus       259 -------~------------~~~~-g~i~vd~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          259 -------S------------LRDD-GYVDVRDEIYT-NIPMLFAAGDVSDY--------IYRQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             -------C------------BCTT-SCBCCBTTTBC-SSTTEEECSTTTCS--------SCCCHHHHHHHHHHHHHHHHH
T ss_pred             -------c------------cCCC-ccEecCCCCcc-CCCCEEEeecccCc--------cHHHHHHHHHHHHHHHHHHHH
Confidence                   0            0011 78999999999 99999999999932        267899999999999999999


Q ss_pred             Hhc
Q 013561          346 KIG  348 (441)
Q Consensus       346 ~l~  348 (441)
                      .|.
T Consensus       310 ~l~  312 (325)
T 2q7v_A          310 QLA  312 (325)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            996

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.35  E-value=6.8e-07  Score=91.30  Aligned_cols=101  Identities=12%  Similarity=0.263  Sum_probs=69.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+||++++.+++.-          ...+.++...+.+.   +. ..++.++.+ .|
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~---l~-~~Gv~i~~~~~v  214 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY----------KYFDKEFTDILAKD---YE-AHGVNLVLGSKV  214 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT----------TTSCHHHHHHHHHH---HH-HTTCEEEESSCE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh----------hhhhhhHHHHHHHH---HH-HCCCEEEcCCee
Confidence            67999999999999999999999999999999886541          00111122222222   22 347777765 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+++.+.....+ +        .++++|.||+|+|.+|+..
T Consensus       215 ~~i~~~~~~v~~v~~~-g--------~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          215 AAFEEVDDEIITKTLD-G--------KEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             EEEEEETTEEEEEETT-S--------CEEEESEEEECCCEEECCG
T ss_pred             EEEEcCCCeEEEEEeC-C--------CEEECCEEEECcCCCCCHH
Confidence            8887534444321211 1        3789999999999998765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.35  E-value=9.9e-07  Score=88.57  Aligned_cols=39  Identities=13%  Similarity=0.168  Sum_probs=33.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .++..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI   58 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            344679999999999999999999999999999998754

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.34  E-value=2.2e-07  Score=99.67  Aligned_cols=93  Identities=9%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             cccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCC-CCCCCCCCCcEEEECCCHHHHH
Q 013561           45 VSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGL-EATKPGEKPRVVVLGTGWGACR  123 (441)
Q Consensus        45 ~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~-~~~~~~~~k~VvIIGgG~aGl~  123 (441)
                      +...|++.++|    +..|...+.+++..+ |+.+..+++++.++++.+  .++.++ .++....+++|+|||+|++|++
T Consensus        49 ~w~~~~~~~~~----~~~~~~~~~r~~~~~-~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~viG~G~~gl~  121 (662)
T 2z3y_A           49 LWLDNPKIQLT----FEATLQQLEAPYNSD-TVLVHRVHSYLERHGLIN--FGIYKRIKPLPTKKTGKVIIIGSGVSGLA  121 (662)
T ss_dssp             HHHTCTTBCCC----HHHHHHHSCTTGGGC-HHHHHHHHHHHHHTTSSS--CSSCBCSSCCCSSCCCEEEEECCBHHHHH
T ss_pred             HHHHCCCcccC----HHHHHHhcCCCccCC-hHHHHHHHHHHHHHHHHh--cCCccccCCCcccCCCeEEEECcCHHHHH
Confidence            34678888877    344666667776544 567778999999976553  233322 1223345789999999999999


Q ss_pred             HHHhhccCCCeEEEEcCCCCc
Q 013561          124 FLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       124 aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|..|++.|++|+|+|+.++.
T Consensus       122 ~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          122 AARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             HHHHHHHTTCEEEEECSSSSS
T ss_pred             HHHHHHHCCCeEEEEecCCCC
Confidence            999999999999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=4.2e-07  Score=93.68  Aligned_cols=100  Identities=8%  Similarity=0.111  Sum_probs=68.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--~--------~~d-~~~~~~l~~~---l~-~~Gv~i~~~~~v  249 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL--R--------KFD-ECIQNTITDH---YV-KEGINVHKLSKI  249 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC--T--------TSC-HHHHHHHHHH---HH-HHTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc--c--------ccC-HHHHHHHHHH---HH-hCCeEEEeCCEE
Confidence            6799999999999999999999999999999988654  1        111 1122222222   22 246777665 68


Q ss_pred             EEEeCCCCE--EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHE--VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+.  +.+...+       ++ .++++|.||+|+|.+|+.
T Consensus       250 ~~i~~~~~~~~~~v~~~~-------G~-~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          250 VKVEKNVETDKLKIHMND-------SK-SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             EEEEECC-CCCEEEEETT-------SC-EEEEESEEEECSCEEECC
T ss_pred             EEEEEcCCCcEEEEEECC-------Cc-EEEEcCEEEECCCCCCcc
Confidence            888754322  3333211       11 378999999999999886

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.33  E-value=9.2e-07  Score=92.11  Aligned_cols=164  Identities=15%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++. .+.  +        .. +.++...+.+.   +. ..++.++.+ .+
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l--~--------~~-d~~~~~~~~~~---l~-~~GV~v~~~~~v  273 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--R--------GF-DQDMANKIGEH---ME-EHGIKFIRQFVP  273 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS--T--------TS-CHHHHHHHHHH---HH-HTTCEEEESEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccc--c--------cC-CHHHHHHHHHH---HH-HCCCEEEeCCeE
Confidence            568999999999999999999999999999984 222  0        11 11222223222   22 347777655 44


Q ss_pred             EEEeCC----CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          188 IGIDTD----KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       188 ~~id~~----~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      ..+...    .+.+.+.....++    ++..++++|.|++|+|.+|+...+. .+.                        
T Consensus       274 ~~v~~~~~~~~~~~~v~~~~~~g----~~~~~~~~D~vi~a~G~~p~~~~l~-l~~------------------------  324 (519)
T 3qfa_A          274 IKVEQIEAGTPGRLRVVAQSTNS----EEIIEGEYNTVMLAIGRDACTRKIG-LET------------------------  324 (519)
T ss_dssp             EEEEEEECCTTCEEEEEEEESSS----SCEEEEEESEEEECSCEEESCSSSC-STT------------------------
T ss_pred             EEEEEccCCCCceEEEEEEECCC----cEEEEEECCEEEEecCCcccCCCCC-hhh------------------------
Confidence            444321    1333333211110    1123678999999999998865321 100                        


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                      .      ++++            +.+-|+|.||+++|| +.|+|||+|||+.     |   .|+++..|+.||+++|+||
T Consensus       325 ~------gl~~------------~~~~G~I~Vd~~~~T-s~~~IyA~GD~~~-----g---~~~~~~~A~~~g~~aa~~i  377 (519)
T 3qfa_A          325 V------GVKI------------NEKTGKIPVTDEEQT-NVPYIYAIGDILE-----D---KVELTPVAIQAGRLLAQRL  377 (519)
T ss_dssp             T------TCCC------------CTTTCCBCCCTTSBC-SSTTEEECGGGBS-----S---SCCCHHHHHHHHHHHHHHH
T ss_pred             c------CcEE------------cCCCCeEeeCCCCcc-CCCCEEEEEeccC-----C---CCccHHHHHHHHHHHHHHH
Confidence            0      0111            111178999999999 9999999999982     2   4789999999999999999


Q ss_pred             H
Q 013561          344 N  344 (441)
Q Consensus       344 ~  344 (441)
                      .
T Consensus       378 ~  378 (519)
T 3qfa_A          378 Y  378 (519)
T ss_dssp             H
T ss_pred             c
Confidence            7

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.33  E-value=4.9e-07  Score=92.79  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=111.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +          .+..+...+.+.   +. ..++.++.+ .|
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~----------~~~~~~~~l~~~---l~-~~Gv~i~~~~~v  239 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF--R----------EDPAIGEAVTAA---FR-AEGIEVLEHTQA  239 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--T----------SCHHHHHHHHHH---HH-HTTCEEETTCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC--C----------CCHHHHHHHHHH---HH-hCCCEEEcCCEE
Confidence            6799999999999999999999999999999988654  1          111122222222   22 246777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+...          ..++++|.||+|+|..|+...+ +.+..                   .       
T Consensus       240 ~~i~~~~~~~~v~~~----------~~~i~aD~Vv~a~G~~p~~~~l-~l~~~-------------------g-------  282 (467)
T 1zk7_A          240 SQVAHMDGEFVLTTT----------HGELRADKLLVATGRTPNTRSL-ALDAA-------------------G-------  282 (467)
T ss_dssp             EEEEEETTEEEEEET----------TEEEEESEEEECSCEEESCTTS-CGGGG-------------------T-------
T ss_pred             EEEEEeCCEEEEEEC----------CcEEEcCEEEECCCCCcCCCcC-Cchhc-------------------C-------
Confidence            888765555444331          1378999999999999876422 11000                   0       


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                          +++            +.. |+|.||+++|| +.|+|||+|||+.         .|.+++.|++||+.+|.||.
T Consensus       283 ----l~~------------~~~-G~i~vd~~~~t-~~~~iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~  332 (467)
T 1zk7_A          283 ----VTV------------NAQ-GAIVIDQGMRT-SNPNIYAAGDCTD---------QPQFVYVAAAAGTRAAINMT  332 (467)
T ss_dssp             ----CCB------------CTT-SCBCCCTTCBC-SSTTEEECSTTBS---------SCCCHHHHHHHHHHHHHHHT
T ss_pred             ----CcC------------CCC-CCEEECCCccc-CCCCEEEEeccCC---------CcccHHHHHHHHHHHHHHHc
Confidence                011            111 78999999999 9999999999993         35689999999999999997

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.33  E-value=2.1e-06  Score=82.43  Aligned_cols=158  Identities=17%  Similarity=0.126  Sum_probs=114.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+.+.+.                 ..+.+.   +.+..++.++.+ .+
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------~~~~~~---l~~~~gv~v~~~~~v  203 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD-----------------QVLQDK---LRSLKNVDIILNAQT  203 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSC-----------------HHHHHH---HHTCTTEEEESSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCcc-----------------HHHHHH---HhhCCCeEEecCCce
Confidence            679999999999999999999999999999998754211                 011111   333357777654 78


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .+++.+.+   .+.+.+..+      +++.++++|.||+|+|..|+...+..    .                   +   
T Consensus       204 ~~i~~~~~~v~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~l~~----~-------------------l---  251 (310)
T 1fl2_A          204 TEVKGDGSKVVGLEYRDRVS------GDIHNIELAGIFVQIGLLPNTNWLEG----A-------------------V---  251 (310)
T ss_dssp             EEEEESSSSEEEEEEEETTT------CCEEEEECSEEEECSCEEESCGGGTT----T-------------------S---
T ss_pred             EEEEcCCCcEEEEEEEECCC------CcEEEEEcCEEEEeeCCccCchHHhc----c-------------------c---
Confidence            88876543   355554211      22347899999999999887532111    0                   0   


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                              ++            +.. |+|.||+++|| +.|+|||+|||+..        .++++..|+.||+.+|.||.
T Consensus       252 --------~~------------~~~-g~i~vd~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~  301 (310)
T 1fl2_A          252 --------ER------------NRM-GEIIIDAKCET-NVKGVFAAGDCTTV--------PYKQIIIATGEGAKASLSAF  301 (310)
T ss_dssp             --------CB------------CTT-SCBCCCTTCBC-SSTTEEECSTTBSC--------SSCCHHHHHHHHHHHHHHHH
T ss_pred             --------cc------------cCC-CcEEcCCCCcc-CCCCEEEeecccCC--------cchhhhhhHhhHHHHHHHHH
Confidence                    00            011 78999999998 99999999999932        23689999999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      ++|.
T Consensus       302 ~~l~  305 (310)
T 1fl2_A          302 DYLI  305 (310)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.33  E-value=2.6e-07  Score=101.43  Aligned_cols=93  Identities=9%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             cccCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCC-CCCCCCCCcEEEECCCHHHHH
Q 013561           45 VSRNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLE-ATKPGEKPRVVVLGTGWGACR  123 (441)
Q Consensus        45 ~~~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~-~~~~~~~k~VvIIGgG~aGl~  123 (441)
                      ++..|+.+++++..|    ...|.++.... ++.+..+++++.++++.+  .++.++. ++....+++|+|||+|++||+
T Consensus       220 ~w~~~P~~a~~~~~~----~~~~~r~~~~~-p~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~viG~G~aGl~  292 (852)
T 2xag_A          220 LWLDNPKIQLTFEAT----LQQLEAPYNSD-TVLVHRVHSYLERHGLIN--FGIYKRIKPLPTKKTGKVIIIGSGVSGLA  292 (852)
T ss_dssp             HHHTCTTBCCCHHHH----HHHCCTTTTSC-HHHHHHHHHHHHHTTSSS--CSSCBCSSCCCSSCCCEEEEECCSHHHHH
T ss_pred             HHhcCCHHHhhHHHH----HHhCCCcccCC-cHHHHHHHHHHHHHHHHh--cCcccccCCcccCCCCeEEEECCCHHHHH
Confidence            456788888776544    44566775434 567888999999966543  1222211 222345789999999999999


Q ss_pred             HHHhhccCCCeEEEEcCCCCc
Q 013561          124 FLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       124 aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      +|..|++.|++|+|+|+.+++
T Consensus       293 ~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          293 AARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             HHHHHHHTTCEEEEECSSSSS
T ss_pred             HHHHHHHCCCcEEEEEecCcC
Confidence            999999999999999998764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.33  E-value=5.5e-07  Score=90.89  Aligned_cols=98  Identities=16%  Similarity=0.301  Sum_probs=68.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|.+.|.+||++++.+++.-. .+        + ..+...+.+.   + +..++.++. ..+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~-~~--------~-~~~~~~l~~~---l-~~~GV~i~~~~~v  208 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR-VL--------G-RRIGAWLRGL---L-TELGVQVELGTGV  208 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH-HH--------C-HHHHHHHHHH---H-HHHTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh-hc--------C-HHHHHHHHHH---H-HHCCCEEEeCCEE
Confidence            679999999999999999999999999999998865410 00        1 1122222222   2 224777774 478


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+  .+.+.++           .++++|.||+|+|..|+.
T Consensus       209 ~~i~~~~~~~~v~~~dg-----------~~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          209 VGFSGEGQLEQVMASDG-----------RSFVADSALICVGAEPAD  243 (410)
T ss_dssp             EEEECSSSCCEEEETTS-----------CEEECSEEEECSCEEECC
T ss_pred             EEEeccCcEEEEEECCC-----------CEEEcCEEEEeeCCeecH
Confidence            88876554  3443331           378999999999998875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.32  E-value=3.4e-07  Score=91.08  Aligned_cols=93  Identities=14%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+||++++.+++.  +         .+ .++...+.+.   +. ..++.++.+ .+
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~---------~~-~~~~~~l~~~---l~-~~gV~i~~~~~v  206 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--G---------LD-EELSNMIKDM---LE-ETGVKFFLNSEL  206 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--T---------CC-HHHHHHHHHH---HH-HTTEEEECSCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec--c---------CC-HHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence            4799999999999999999999999999999988654  1         11 1122222222   22 357887765 68


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++  .+.+.++++           . +++|.||+|+|.+|+.
T Consensus       207 ~~i~--~~~v~~~~g-----------~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          207 LEAN--EEGVLTNSG-----------F-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             EEEC--SSEEEETTE-----------E-EECSCEEEECCEEECC
T ss_pred             EEEE--eeEEEECCC-----------E-EEcCEEEECcCCCcCH
Confidence            8886  345555331           3 8999999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.32  E-value=7.7e-07  Score=91.35  Aligned_cols=159  Identities=20%  Similarity=0.224  Sum_probs=109.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.-          ...+.++...+.+.   +.    +.++.+ .+
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~~~d~~~~~~l~~~---l~----v~i~~~~~v  234 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI----------TLEDQDIVNTLLSI---LK----LNIKFNSPV  234 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT----------TSCCHHHHHHHHHH---HC----CCEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC----------CCCCHHHHHHHHhc---CE----EEEEECCEE
Confidence            67999999999999999999999999999999886541          11011122222222   11    444443 56


Q ss_pred             EEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          188 IGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       188 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      .+++.+. +.+.+.....     ++++.++++|.||+|+|.+|+.. + +.++.                   .      
T Consensus       235 ~~i~~~~~~~v~v~~~~~-----~G~~~~i~~D~vi~a~G~~p~~~-l-~l~~~-------------------g------  282 (466)
T 3l8k_A          235 TEVKKIKDDEYEVIYSTK-----DGSKKSIFTNSVVLAAGRRPVIP-E-GAREI-------------------G------  282 (466)
T ss_dssp             EEEEEEETTEEEEEECCT-----TSCCEEEEESCEEECCCEEECCC-T-TTGGG-------------------T------
T ss_pred             EEEEEcCCCcEEEEEEec-----CCceEEEEcCEEEECcCCCcccc-c-chhhc-------------------C------
Confidence            6776544 4554443210     12234789999999999998765 2 11000                   0      


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                           +++            +.. | |.||+++|| +.|+|||+|||+.         .|+++..|+.||+.+|+||..
T Consensus       283 -----l~~------------~~~-G-i~vd~~~~t-~~~~Iya~GD~~~---------~~~~~~~A~~~g~~aa~~i~~  332 (466)
T 3l8k_A          283 -----LSI------------SKT-G-IVVDETMKT-NIPNVFATGDANG---------LAPYYHAAVRMSIAAANNIMA  332 (466)
T ss_dssp             -----CCB------------CSS-S-BCCCTTCBC-SSTTEEECGGGTC---------SCCSHHHHHHHHHHHHHHHHT
T ss_pred             -----cee------------CCC-C-EeECCCccC-CCCCEEEEEecCC---------CCccHhHHHHHHHHHHHHHhC
Confidence                 111            111 7 999999999 9999999999992         378999999999999999983

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.32  E-value=2.7e-06  Score=82.56  Aligned_cols=158  Identities=18%  Similarity=0.105  Sum_probs=114.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+.+...                 ..+.+   .+.+..++.++. ..+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-----------------~~~~~---~~~~~~gv~i~~~~~v  218 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS-----------------KIMQQ---RALSNPKIDVIWNSSV  218 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-----------------HHHHH---HHHTCTTEEEECSEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCcc-----------------HHHHH---HHHhCCCeeEecCCce
Confidence            679999999999999999999999999999998754310                 01111   122345788775 478


Q ss_pred             EEEeCCCC-----EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcc
Q 013561          188 IGIDTDKH-----EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLM  262 (441)
Q Consensus       188 ~~id~~~~-----~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~  262 (441)
                      .+++.+.+     .+.+.+..+      ++..++++|.||+|+|.+|+...+..                       .+ 
T Consensus       219 ~~i~~~~~~~~v~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~~~~-----------------------~l-  268 (333)
T 1vdc_A          219 VEAYGDGERDVLGGLKVKNVVT------GDVSDLKVSGLFFAIGHEPATKFLDG-----------------------GV-  268 (333)
T ss_dssp             EEEEESSSSSSEEEEEEEETTT------CCEEEEECSEEEECSCEEESCGGGTT-----------------------SS-
T ss_pred             EEEeCCCCccceeeEEEEecCC------CceEEEecCEEEEEeCCccchHHhhc-----------------------cc-
Confidence            88876552     255654211      22347899999999999987542210                       00 


Q ss_pred             cccCCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013561          263 LSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE  341 (441)
Q Consensus       263 ~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~  341 (441)
                                ++            +.. |+|.||++ ++| +.|+|||+|||+..        .+.++..|+.||+.||.
T Consensus       269 ----------~~------------~~~-G~i~vd~~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~  316 (333)
T 1vdc_A          269 ----------EL------------DSD-GYVVTKPGTTQT-SVPGVFAAGDVQDK--------KYRQAITAAGTGCMAAL  316 (333)
T ss_dssp             ----------CB------------CTT-SCBCCCTTSCBC-SSTTEEECGGGGCS--------SCCCHHHHHHHHHHHHH
T ss_pred             ----------cc------------cCC-CCEEechhhccc-CCCCEEEeeeccCC--------CchhHHHHHHhHHHHHH
Confidence                      00            111 78999997 577 99999999999932        24789999999999999


Q ss_pred             HHHHHhc
Q 013561          342 LFNKKIG  348 (441)
Q Consensus       342 nI~~~l~  348 (441)
                      ||.+.|.
T Consensus       317 ~i~~~l~  323 (333)
T 1vdc_A          317 DAEHYLQ  323 (333)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999996

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.32  E-value=9.3e-07  Score=91.11  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=67.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.. +.  +        .. +.++...+.+.   +. ..++.++.+ .+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l--~--------~~-d~~~~~~l~~~---l~-~~Gv~i~~~~~v  250 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-VL--R--------GF-DQQMAELVAAS---ME-ERGIPFLRKTVP  250 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-SS--T--------TS-CHHHHHHHHHH---HH-HTTCCEEETEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-CC--c--------cc-CHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence            6799999999999999999999999999998843 21  0        11 11222222222   22 346776654 68


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++...+   .+.+.+...      ++..++++|.||+|+|.+|+..
T Consensus       251 ~~i~~~~~~~~~v~~~~~~~------~~~~~~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          251 LSVEKQDDGKLLVKYKNVET------GEESEDVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             EEEEECTTSCEEEEEEETTT------CCEEEEEESEEEECSCEEECCG
T ss_pred             EEEEEcCCCcEEEEEecCCC------CceeEEEcCEEEECcccccCcC
Confidence            88875332   344444321      1234789999999999988764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.32  E-value=2.7e-06  Score=82.96  Aligned_cols=158  Identities=15%  Similarity=0.114  Sum_probs=114.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+.+...                 ..+.+.   +.+..++.++.+ .+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~-----------------~~~~~~---~~~~~gV~v~~~~~v  214 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS-----------------KIMLDR---ARNNDKIRFLTNHTV  214 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC-----------------TTHHHH---HHHCTTEEEECSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc-----------------HHHHHH---HhccCCcEEEeCcee
Confidence            679999999999999999999999999999988754310                 111111   222357887754 78


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .+++.+.+  .+.+.+..+      ++..++++|.||+|+|.+|+...+..                       .+    
T Consensus       215 ~~i~~~~~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~~~~-----------------------~l----  261 (335)
T 2a87_A          215 VAVDGDTTVTGLRVRDTNT------GAETTLPVTGVFVAIGHEPRSGLVRE-----------------------AI----  261 (335)
T ss_dssp             EEEECSSSCCEEEEEEETT------SCCEEECCSCEEECSCEEECCTTTBT-----------------------TB----
T ss_pred             EEEecCCcEeEEEEEEcCC------CceEEeecCEEEEccCCccChhHhhc-----------------------cc----
Confidence            88876653  366654211      22347899999999999987643220                       00    


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                             ++            +.. |+|.||++ ++| +.|+|||+|||+..        .++++..|+.||+.+|.||.
T Consensus       262 -------~~------------~~~-G~i~vd~~~~~t-~~~~iya~GD~~~~--------~~~~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          262 -------DV------------DPD-GYVLVQGRTTST-SLPGVFAAGDLVDR--------TYRQAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             -------CB------------CTT-SCBCCSTTSSBC-SSTTEEECGGGTCC--------SCCCHHHHHHHHHHHHHHHH
T ss_pred             -------cc------------CCC-ccEEeCCCCCcc-CCCCEEEeeecCCc--------cHHHHHHHHHhHHHHHHHHH
Confidence                   00            111 78999996 577 99999999999932        25789999999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      +.|.
T Consensus       313 ~~l~  316 (335)
T 2a87_A          313 RWLA  316 (335)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9996

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.32  E-value=1.2e-06  Score=88.47  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|.+.|.+||++++.+++.-          ......+...+.+.   + +..+++++.+ .|
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~----------~~~~~~~~~~l~~~---l-~~~GV~i~~~~~v  217 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA----------RVAGEALSEFYQAE---H-RAHGVDLRTGAAM  217 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT----------TTSCHHHHHHHHHH---H-HHTTCEEEETCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh----------hhcCHHHHHHHHHH---H-HhCCCEEEECCEE
Confidence            67999999999999999999999999999999886541          10111122223222   2 2357777754 78


Q ss_pred             EEEeCCCCEE-EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEV-YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v-~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.++..+ .+...+ +        .++++|.||+|+|..|+.
T Consensus       218 ~~i~~~~~~v~~v~l~d-G--------~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          218 DCIEGDGTKVTGVRMQD-G--------SVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             EEEEESSSBEEEEEESS-S--------CEEECSEEEECSCCEESC
T ss_pred             EEEEecCCcEEEEEeCC-C--------CEEEcCEEEECCCCccCh
Confidence            8887654433 222211 1        378999999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.31  E-value=5.7e-07  Score=95.07  Aligned_cols=97  Identities=12%  Similarity=0.187  Sum_probs=70.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+++.-          . .+..+...+.+.   +. ..++.++.+ .|
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~-~~~~~~~~l~~~---l~-~~GV~i~~~~~v  251 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP----------P-IDYEMAAYVHEH---MK-NHDVELVFEDGV  251 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT----------T-SCHHHHHHHHHH---HH-HTTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc----------c-CCHHHHHHHHHH---HH-HcCCEEEECCeE
Confidence            67999999999999999999999999999999886541          1 111222223222   22 347777654 78


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+.+.+.++           .++++|.||+|+|..|+.
T Consensus       252 ~~i~~~~~~v~~~~g-----------~~i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          252 DALEENGAVVRLKSG-----------SVIQTDMLILAIGVQPES  284 (588)
T ss_dssp             EEEEGGGTEEEETTS-----------CEEECSEEEECSCEEECC
T ss_pred             EEEecCCCEEEECCC-----------CEEEcCEEEEccCCCCCh
Confidence            888876666665432           378999999999998875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.31  E-value=2.8e-06  Score=88.91  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+|+|+|||+|..|+.+|..|++.+.+|+++++.+..
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            3789999999999999999999989999999988754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.31  E-value=8.6e-07  Score=91.45  Aligned_cols=158  Identities=15%  Similarity=0.218  Sum_probs=112.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+++.  +        ..+ ..+...+.+.   +. ..++.++. ..|
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~--------~~~-~~~~~~l~~~---l~-~~Gv~i~~~~~V  255 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL--R--------NFD-YDLRQLLNDA---MV-AKGISIIYEATV  255 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------TSC-HHHHHHHHHH---HH-HHTCEEESSCCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc--c--------ccC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            6799999999999999999999999999999988654  1        111 1122222222   22 24677766 478


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++.+.+.+.+...++         .++++|.||+|+|.+|+...+. .          +       ..  .+      
T Consensus       256 ~~i~~~~~~v~v~~~~g---------~~i~aD~Vi~A~G~~p~~~~l~-l----------~-------~~--g~------  300 (484)
T 3o0h_A          256 SQVQSTENCYNVVLTNG---------QTICADRVMLATGRVPNTTGLG-L----------E-------RA--GV------  300 (484)
T ss_dssp             EEEEECSSSEEEEETTS---------CEEEESEEEECCCEEECCTTCC-H----------H-------HH--TC------
T ss_pred             EEEEeeCCEEEEEECCC---------cEEEcCEEEEeeCCCcCCCCCC-h----------h-------hc--Cc------
Confidence            88877655454443211         3789999999999988764321 0          0       00  11      


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                           ++            +.. |+|.||+++|| +.|+|||+|||+      +   .++++..|+.||+.+|+||.
T Consensus       301 -----~~------------~~~-G~i~vd~~~~t-~~~~Iya~GD~~------~---~~~~~~~A~~~g~~aa~~i~  349 (484)
T 3o0h_A          301 -----KV------------NEF-GAVVVDEKMTT-NVSHIWAVGDVT------G---HIQLTPVAIHDAMCFVKNAF  349 (484)
T ss_dssp             -----CB------------CTT-SCBCCCTTSBC-SSTTEEECGGGG------T---SCCCHHHHHHHHHHHHHHHH
T ss_pred             -----eE------------CCC-CCEeECCCCCC-CCCCEEEEEecC------C---CCcCHHHHHHHHHHHHHHHc
Confidence                 11            111 78999999999 999999999999      2   46899999999999999998

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.30  E-value=2.8e-06  Score=82.36  Aligned_cols=158  Identities=15%  Similarity=0.092  Sum_probs=114.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|.+.|.+|+++++.+.+..             .    ..+.+   .+.+..++.++.+ .+
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------------~----~~~~~---~l~~~~gv~i~~~~~v  232 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------------S----TIMQK---RAEKNEKIEILYNTVA  232 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------------C----HHHHH---HHHHCTTEEEECSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------------C----HHHHH---HHHhcCCeEEeeccee
Confidence            67999999999999999999999999999999875431             0    01111   1333347887754 78


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .+++.+.+   .+.+.+..+      ++..++++|.||+|+|..|+...+..                            
T Consensus       233 ~~i~~~~~~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~~~~----------------------------  278 (338)
T 3itj_A          233 LEAKGDGKLLNALRIKNTKK------NEETDLPVSGLFYAIGHTPATKIVAG----------------------------  278 (338)
T ss_dssp             EEEEESSSSEEEEEEEETTT------TEEEEEECSEEEECSCEEECCGGGBT----------------------------
T ss_pred             EEEEcccCcEEEEEEEECCC------CceEEEEeCEEEEEeCCCCChhHhhC----------------------------
Confidence            88876654   255555211      22357899999999999886532110                            


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceee-CCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGV-DEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~V-d~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                            ++++            +.. |+|.| |++++| +.|+|||+|||+.        ..|+.+..|+.||+.||.||
T Consensus       279 ------~l~~------------~~~-G~i~v~~~~~~t-~~~~vya~GD~~~--------~~~~~~~~A~~~g~~aa~~i  330 (338)
T 3itj_A          279 ------QVDT------------DEA-GYIKTVPGSSLT-SVPGFFAAGDVQD--------SKYRQAITSAGSGCMAALDA  330 (338)
T ss_dssp             ------TBCB------------CTT-SCBCCCTTSSBC-SSTTEEECGGGGC--------SSCCCHHHHHHHHHHHHHHH
T ss_pred             ------ceEe------------cCC-CcEEEcCccccc-CCCCEEEeeccCC--------CCccceeeehhhhHHHHHHH
Confidence                  0011            011 77884 888999 9999999999993        24688999999999999999


Q ss_pred             HHHhc
Q 013561          344 NKKIG  348 (441)
Q Consensus       344 ~~~l~  348 (441)
                      .+.|.
T Consensus       331 ~~~l~  335 (338)
T 3itj_A          331 EKYLT  335 (338)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99996

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.30  E-value=6.7e-07  Score=89.62  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            568999999999999999999999999999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.30  E-value=1.1e-06  Score=92.24  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+++.  +        . ....+...+.+.   + +..++.++.+ .+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~-~~~~~~~~l~~~---l-~~~GV~i~~~~~v  215 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM--T--------P-VDREMAGFAHQA---I-RDQGVDLRLGTAL  215 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC--T--------T-SCHHHHHHHHHH---H-HHTTCEEEETCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc--h--------h-cCHHHHHHHHHH---H-HHCCCEEEeCCeE
Confidence            5799999999999999999999999999999988654  1        1 111122222222   2 2347777664 67


Q ss_pred             EEEeC-------------------CCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDT-------------------DKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~-------------------~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.                   ..+.+.+...+         ..++++|.||+|+|.+|+.
T Consensus       216 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------g~~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          216 SEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSN---------GELLETDLLIMAIGVRPET  269 (565)
T ss_dssp             EEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETT---------SCEEEESEEEECSCEEECC
T ss_pred             EEEeccccccccccccccccccccCCCcEEEEEcC---------CCEEEcCEEEECcCCccch
Confidence            77765                   34445444321         1378999999999998874

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.29  E-value=2.4e-06  Score=82.14  Aligned_cols=163  Identities=17%  Similarity=0.098  Sum_probs=114.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||+|+.|+++|..|++.|.+|+++++.+.+...             .    .+.+   .+.+..++.++.+ .+
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~----~~~~---~l~~~~gv~v~~~~~v  202 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA-------------P----ITLE---HAKNNDKIEFLTPYVV  202 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSC-------------H----HHHH---HHHTCTTEEEETTEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCC-------------H----HHHH---HHhhCCCeEEEeCCEE
Confidence            579999999999999999999999999999998754310             0    0111   1333357877654 67


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .+++.+.+   .+.+....+      +++.++++|.||+|+|..|+...++...                          
T Consensus       203 ~~i~~~~~~v~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~l~~~g--------------------------  250 (311)
T 2q0l_A          203 EEIKGDASGVSSLSIKNTAT------NEKRELVVPGFFIFVGYDVNNAVLKQED--------------------------  250 (311)
T ss_dssp             EEEEEETTEEEEEEEEETTT------CCEEEEECSEEEECSCEEECCGGGBCTT--------------------------
T ss_pred             EEEECCCCcEeEEEEEecCC------CceEEEecCEEEEEecCccChhhhhccc--------------------------
Confidence            77875533   345543111      2234789999999999998754222110                          


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                         ...++++            +.. |+|.||+++|| +.|+|||+|||+..        .|+++..|+.||+.+|.||.
T Consensus       251 ---~~~~l~~------------~~~-g~i~vd~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~  305 (311)
T 2q0l_A          251 ---NSMLCKC------------DEY-GSIVVDFSMKT-NVQGLFAAGDIRIF--------APKQVVCAASDGATAALSVI  305 (311)
T ss_dssp             ---SCBSSCB------------CTT-SCBCCCTTCBC-SSTTEEECSTTBTT--------CCCCHHHHHHHHHHHHHHHH
T ss_pred             ---ccceeEe------------ccC-CCEEeCCcccc-CCCCeEEcccccCc--------chHHHHHHHHhHHHHHHHHH
Confidence               0000111            111 78999999999 99999999999932        26799999999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      +.|.
T Consensus       306 ~~l~  309 (311)
T 2q0l_A          306 SYLE  309 (311)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8885

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.28  E-value=9.4e-07  Score=85.06  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=62.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+.....             ..   ...+    .....+...+. ..+
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~-------------~~---~~~~----~~~~~~~~~~~~~~~  211 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRAS-------------KT---MQER----VLNHPKIEVIWNSEL  211 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-------------HH---HHHH----HHTCTTEEEECSEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccccccc-------------ch---hhhh----hhcccceeeEeeeee
Confidence            679999999999999999999999999999987643210             00   0111    11122333322 233


Q ss_pred             EEEe---CCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          188 IGID---TDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       188 ~~id---~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      ..+.   .....+.+.....      ++..++++|.|++|+|..|+...+
T Consensus       212 ~~i~~~~~~~~~~~~~~~~~------~~~~~i~~d~vi~a~G~~pn~~~l  255 (314)
T 4a5l_A          212 VELEGDGDLLNGAKIHNLVS------GEYKVVPVAGLFYAIGHSPNSKFL  255 (314)
T ss_dssp             EEEEESSSSEEEEEEEETTT------CCEEEEECSEEEECSCEEESCGGG
T ss_pred             EEEEeeeeccceeEEeeccc------ccceeeccccceEecccccChhHh
Confidence            3333   2223444544321      234579999999999999987643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.28  E-value=1.7e-06  Score=84.04  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=69.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+.+...            . .....+.+.   +. ..++.++.+ .+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~------------~-~~~~~l~~~---l~-~~gv~v~~~~~v  214 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH------------E-ASVKELMKA---HE-EGRLEVLTPYEL  214 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSC------------H-HHHHHHHHH---HH-TTSSEEETTEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCcc------------H-HHHHHHHhc---cc-cCCeEEecCCcc
Confidence            679999999999999999999999999999998765311            0 111112221   22 346777665 78


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+++  .+.+....+      ++..++++|.||+|+|.+|+..
T Consensus       215 ~~i~~~~~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~  255 (335)
T 2zbw_A          215 RRVEGDERVRWAVVFHNQT------QEELALEVDAVLILAGYITKLG  255 (335)
T ss_dssp             EEEEESSSEEEEEEEETTT------CCEEEEECSEEEECCCEEEECG
T ss_pred             eeEccCCCeeEEEEEECCC------CceEEEecCEEEEeecCCCCch
Confidence            88876544  455553211      2234789999999999998754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.28  E-value=7.5e-07  Score=91.82  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=67.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|+++++.+.+.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~--------~~~-~~~~~~l~~~---l~-~~Gv~i~~~~~v  250 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG--T--------IYD-GDMAEYIYKE---AD-KHHIEILTNENV  250 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTT--S--------SSC-HHHHHHHHHH---HH-HTTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchh--h--------cCC-HHHHHHHHHH---HH-HcCcEEEcCCEE
Confidence            6799999999999999999999999999999987543  1        111 1122222222   22 346777654 67


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+.+...+...          ..++++|.||+|+|..|+..
T Consensus       251 ~~i~~~~~v~~v~~~----------~~~i~~D~vi~a~G~~p~~~  285 (480)
T 3cgb_A          251 KAFKGNERVEAVETD----------KGTYKADLVLVSVGVKPNTD  285 (480)
T ss_dssp             EEEEESSBEEEEEET----------TEEEECSEEEECSCEEESCG
T ss_pred             EEEEcCCcEEEEEEC----------CCEEEcCEEEECcCCCcChH
Confidence            888765433223221          13789999999999988754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.28  E-value=2.1e-06  Score=82.81  Aligned_cols=161  Identities=18%  Similarity=0.167  Sum_probs=113.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+.+...             ......+.+   .+ +..+++++.+ .+
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~l~~---~l-~~~gv~i~~~~~v  207 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILIKRLMD---KV-ENGNIILHTNRTL  207 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCC-------------HHHHHHHHH---HH-HTSSEEEECSCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccC-------------HHHHHHHHH---hc-ccCCeEEEcCcee
Confidence            679999999999999999999999999999998754311             011111111   12 2357887754 78


Q ss_pred             EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .+++.+.+.   +.+.+..+     .++..++++|.||+|+|.+|+...++.                       .+   
T Consensus       208 ~~i~~~~~~v~~v~~~~~~~-----~g~~~~i~~D~vv~a~G~~p~~~~~~~-----------------------~l---  256 (320)
T 1trb_A          208 EEVTGDQMGVTGVRLRDTQN-----SDNIESLDVAGLFVAIGHSPNTAIFEG-----------------------QL---  256 (320)
T ss_dssp             EEEEECSSSEEEEEEECCTT-----CCCCEEEECSEEEECSCEEESCGGGTT-----------------------TS---
T ss_pred             EEEEcCCCceEEEEEEeccC-----CCceEEEEcCEEEEEeCCCCChHHhcc-----------------------cc---
Confidence            888765522   55543211     012247899999999999887532210                       00   


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCc-----ccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWL-----RAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYL  339 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~l-----qt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~a  339 (441)
                              ++            + . |+|.||+++     +| ++|+|||+|||+..        .+..+..|+.||+.|
T Consensus       257 --------~~------------~-~-G~i~vd~~~~~~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~a  305 (320)
T 1trb_A          257 --------EL------------E-N-GYIKVQSGIHGNATQT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMA  305 (320)
T ss_dssp             --------CE------------E-T-TEECCCCSSSSCTTBC-SSTTEEECGGGGCS--------SSCCHHHHHHHHHHH
T ss_pred             --------cc------------c-C-ceEEECCCcccccccC-CCCCEEEcccccCC--------cchhhhhhhccHHHH
Confidence                    00            0 0 889999997     67 99999999999932        257899999999999


Q ss_pred             HHHHHHHhc
Q 013561          340 AELFNKKIG  348 (441)
Q Consensus       340 A~nI~~~l~  348 (441)
                      |.||.++|.
T Consensus       306 a~~i~~~l~  314 (320)
T 1trb_A          306 ALDAERYLD  314 (320)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999996

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.28  E-value=9.5e-07  Score=88.38  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            358999999999999999999999999999998654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.27  E-value=1.4e-06  Score=89.86  Aligned_cols=103  Identities=14%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+.+.           .. +.++...+.+.   +. ..++.++.+ .+
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~-----------~~-d~~~~~~l~~~---l~-~~gv~~~~~~~v  248 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR-----------GF-DQQMSSLVTEH---ME-SHGTQFLKGCVP  248 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-----------TS-CHHHHHHHHHH---HH-HTTCEEEETEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc-----------cC-CHHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            5689999999999999999999999999999864111           11 11222223222   22 346777665 67


Q ss_pred             EEEeC-CCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC
Q 013561          188 IGIDT-DKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG  233 (441)
Q Consensus       188 ~~id~-~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~  233 (441)
                      .+++. +.+  .+.+.+..+      ++..++++|.||+|+|.+|+...
T Consensus       249 ~~i~~~~~~~~~v~~~~~~~------g~~~~~~~D~vi~a~G~~p~~~~  291 (488)
T 3dgz_A          249 SHIKKLPTNQLQVTWEDHAS------GKEDTGTFDTVLWAIGRVPETRT  291 (488)
T ss_dssp             EEEEECTTSCEEEEEEETTT------TEEEEEEESEEEECSCEEESCGG
T ss_pred             EEEEEcCCCcEEEEEEeCCC------CeeEEEECCEEEEcccCCcccCc
Confidence            77764 223  344443211      12235789999999999987653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.26  E-value=8.9e-07  Score=86.74  Aligned_cols=35  Identities=9%  Similarity=0.084  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~  144 (441)
                      ++|+|||||++|+++|..|++   .|++|+|||+++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            489999999999999999999   99999999998644

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.26  E-value=1.1e-06  Score=90.23  Aligned_cols=100  Identities=13%  Similarity=0.201  Sum_probs=69.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      +++|+|||+|+.|+++|..|++. |.+||++++.+++.-.         . ....+...+.+.   + +..++.++.+ .
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~---------~-~~~~~~~~l~~~---l-~~~GV~i~~~~~  224 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG---------F-TSKSLSQMLRHD---L-EKNDVVVHTGEK  224 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT---------T-SCHHHHHHHHHH---H-HHTTCEEECSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc---------c-cCHHHHHHHHHH---H-HhcCCEEEeCCE
Confidence            67999999999999999999998 9999999998865410         1 111222223222   2 2357777765 7


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      |.+++.+++.+.+...++         .++++|.||+|+|..|+.
T Consensus       225 v~~i~~~~~~v~v~~~~g---------~~i~aD~Vv~a~G~~p~~  260 (472)
T 3iwa_A          225 VVRLEGENGKVARVITDK---------RTLDADLVILAAGVSPNT  260 (472)
T ss_dssp             EEEEEESSSBEEEEEESS---------CEEECSEEEECSCEEECC
T ss_pred             EEEEEccCCeEEEEEeCC---------CEEEcCEEEECCCCCcCH
Confidence            888877555444333211         378999999999998875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.25  E-value=1.7e-06  Score=88.35  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=66.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||+|+.|+++|..|++.|.+||++++.+++.-          ...+.++...+.+.   +.+ . +.++.+ .+
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~---l~~-~-v~i~~~~~v  212 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR----------RSFDKEVTDILEEK---LKK-H-VNLRLQEIT  212 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT----------TTSCHHHHHHHHHH---HTT-T-SEEEESCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch----------hhcCHHHHHHHHHH---HHh-C-cEEEeCCeE
Confidence            67999999999999999999999999999999886541          10111222223332   333 3 666554 67


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+...+...          ..++++|.||+|+|.+|+.
T Consensus       213 ~~i~~~~~v~~v~~~----------g~~i~~D~Vv~a~G~~p~~  246 (449)
T 3kd9_A          213 MKIEGEERVEKVVTD----------AGEYKAELVILATGIKPNI  246 (449)
T ss_dssp             EEEECSSSCCEEEET----------TEEEECSEEEECSCEEECC
T ss_pred             EEEeccCcEEEEEeC----------CCEEECCEEEEeeCCccCH
Confidence            788765432112211          1378999999999998875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.24  E-value=1.7e-06  Score=86.96  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=68.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||+|+.|+++|..|.+.|.+||++++.+++.-.         . ....+...+.+.   + +..+++++.+ .|
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~---------~-~~~~~~~~l~~~---l-~~~GV~i~~~~~v  207 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR---------V-VTPEISSYFHDR---H-SGAGIRMHYGVRA  207 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT---------T-SCHHHHHHHHHH---H-HHTTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh---------c-cCHHHHHHHHHH---H-HhCCcEEEECCEE
Confidence            679999999999999999999999999999998865411         0 111122222222   2 2357777765 78


Q ss_pred             EEEeCCCCEEE-EEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+++.+. +...+ +        .++++|.||+|+|..|+.
T Consensus       208 ~~i~~~~~~v~~V~~~d-G--------~~i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          208 TEIAAEGDRVTGVVLSD-G--------NTLPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             EEEEEETTEEEEEEETT-S--------CEEECSEEEECCCEEECC
T ss_pred             EEEEecCCcEEEEEeCC-C--------CEEEcCEEEECcCCccCH
Confidence            88876544432 32211 1        378999999999998876

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.23  E-value=2.3e-06  Score=87.26  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|.+|+|+|+.+..
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~   61 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   61 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            468999999999999999999999999999998754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.22  E-value=1.7e-06  Score=88.00  Aligned_cols=100  Identities=13%  Similarity=0.171  Sum_probs=66.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+||++++.+.+.-.         ..+ ..+...+.+.   +. ..++.++.+ .+
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~---------~~~-~~~~~~l~~~---l~-~~GV~i~~~~~v  214 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER---------VTA-PPVSAFYEHL---HR-EAGVDIRTGTQV  214 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT---------TSC-HHHHHHHHHH---HH-HHTCEEECSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc---------hhh-HHHHHHHHHH---HH-hCCeEEEeCCEE
Confidence            679999999999999999999999999999998765310         011 1121222222   22 246777665 68


Q ss_pred             EEEeC--CCCEE-EEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDT--DKHEV-YCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~--~~~~v-~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.  +++.+ .+...+ +        .++++|.||+|+|.+|+.
T Consensus       215 ~~i~~~~~~~~v~~v~~~~-G--------~~i~~D~Vv~a~G~~p~~  252 (431)
T 1q1r_A          215 CGFEMSTDQQKVTAVLCED-G--------TRLPADLVIAGIGLIPNC  252 (431)
T ss_dssp             EEEEECTTTCCEEEEEETT-S--------CEEECSEEEECCCEEECC
T ss_pred             EEEEeccCCCcEEEEEeCC-C--------CEEEcCEEEECCCCCcCc
Confidence            88875  33322 232211 1        378999999999998875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.21  E-value=8.2e-07  Score=89.30  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3589999999999999999999999999999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.20  E-value=3.7e-06  Score=82.80  Aligned_cols=100  Identities=19%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|++.|.+|+++++.+.+...            . .....+.+.   . +..++.++.+ .+
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~------------~-~~~~~l~~~---~-~~~gv~i~~~~~v  225 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH------------G-KTAHEVERA---R-ANGTIDVYLETEV  225 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC------------S-HHHHSSHHH---H-HHTSEEEESSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC------------H-HHHHHHHHH---h-hcCceEEEcCcCH
Confidence            679999999999999999999999999999998754311            0 111122222   1 2246777765 78


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+.+   .+.+...+       +++.++++|.||+|+|..|+..
T Consensus       226 ~~i~~~~~~v~~v~~~~~~-------g~~~~i~~D~vi~a~G~~p~~~  266 (360)
T 3ab1_A          226 ASIEESNGVLTRVHLRSSD-------GSKWTVEADRLLILIGFKSNLG  266 (360)
T ss_dssp             EEEEEETTEEEEEEEEETT-------CCEEEEECSEEEECCCBCCSCG
T ss_pred             HHhccCCCceEEEEEEecC-------CCeEEEeCCEEEECCCCCCCHH
Confidence            88876544   34444111       2234789999999999988754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.20  E-value=1.7e-06  Score=90.11  Aligned_cols=185  Identities=19%  Similarity=0.184  Sum_probs=121.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SCI  188 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~  188 (441)
                      ++|+|||||+.|+++|..|++.|.+||++++.+++.  +        .. +.++...+.+.   +. ..++.++.+ .|.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l--~--------~~-~~~~~~~l~~~---l~-~~GV~i~~~~~V~  279 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--L--------IK-DNETRAYVLDR---MK-EQGMEIISGSNVT  279 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--T--------CC-SHHHHHHHHHH---HH-HTTCEEESSCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc--c--------cc-cHHHHHHHHHH---HH-hCCcEEEECCEEE
Confidence            799999999999999999999999999999988654  1        11 11122223222   22 347777755 788


Q ss_pred             EEeCCCCE----EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          189 GIDTDKHE----VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       189 ~id~~~~~----v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      +++.+.+.    +.+...+       + +.++++|.||+|+|.+|+...  ..                 +..  .+   
T Consensus       280 ~i~~~~~~~v~~~~v~~~~-------G-~~~i~aD~Vv~A~G~~p~~~~--~l-----------------~~~--gl---  327 (523)
T 1mo9_A          280 RIEEDANGRVQAVVAMTPN-------G-EMRIETDFVFLGLGEQPRSAE--LA-----------------KIL--GL---  327 (523)
T ss_dssp             EEEECTTSBEEEEEEEETT-------E-EEEEECSCEEECCCCEECCHH--HH-----------------HHH--TC---
T ss_pred             EEEEcCCCceEEEEEEECC-------C-cEEEEcCEEEECcCCccCCcc--CH-----------------HHc--CC---
Confidence            88763222    3333311       1 126899999999999987531  11                 000  11   


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                              ++            +.. |+|.||++||| +.|+|||+|||+.         .|+++..|++||+.+|.||.
T Consensus       328 --------~~------------~~~-G~i~Vd~~~~t-~~~~IyA~GD~~~---------~~~~~~~A~~~g~~aa~~i~  376 (523)
T 1mo9_A          328 --------DL------------GPK-GEVLVNEYLQT-SVPNVYAVGDLIG---------GPMEMFKARKSGCYAARNVM  376 (523)
T ss_dssp             --------CB------------CTT-SCBCCCTTSBC-SSTTEEECGGGGC---------SSCSHHHHHHHHHHHHHHHT
T ss_pred             --------cc------------CCC-CCEEECCCCcc-CCCCEEEEeecCC---------CcccHHHHHHHHHHHHHHHc
Confidence                    11            111 78999999999 9999999999992         35789999999999999997


Q ss_pred             HHhccccCCCcccccCCCCCCCceeecceeEEEecCCc
Q 013561          345 KKIGEQDGGKALSAKDINLGDPFVYKHLGSMATVGRYK  382 (441)
Q Consensus       345 ~~l~~~~~g~~~~~~~~~~~~~f~~~~~g~~~~lG~~~  382 (441)
                      .        +... -++. ..|+.......+.++|...
T Consensus       377 g--------~~~~-~~~~-~~p~~~~~~~~~a~vG~~e  404 (523)
T 1mo9_A          377 G--------EKIS-YTPK-NYPDFLHTHYEVSFLGMGE  404 (523)
T ss_dssp             T--------CCCC-CCCC-SCCEEEESSSEEEEEECCH
T ss_pred             C--------CCCC-CCCC-CCCeEEECCCceEEEeCCH
Confidence            2        2100 0012 1455444445677887654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.17  E-value=6.8e-06  Score=83.69  Aligned_cols=140  Identities=11%  Similarity=0.069  Sum_probs=98.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.+.+ |+++++.+.+.                              +..++. ....+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~l------------------------------~~~~i~-~~~~v  260 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI------------------------------QNESLQ-QVPEI  260 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC------------------------------BCSSEE-EECCE
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCcC------------------------------CCCCeE-EecCe
Confidence            68999999999999999999999999 99999876430                              012333 23456


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCC-----CCCcccccccccCHhHHHHHHHHHHHhcc
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFG-----IKGVKENAYFLREVNHAQEIRKKLLLNLM  262 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~-----ipG~~~~~~~l~~~~~a~~~~~~i~~~~~  262 (441)
                      .+++.+...|.+.++          +..+++|.||+|||.+|+++-     ++....                    .+.
T Consensus       261 ~~~~~~~~~v~~~dG----------~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~--------------------~i~  310 (447)
T 2gv8_A          261 TKFDPTTREIYLKGG----------KVLSNIDRVIYCTGYLYSVPFPSLAKLKSPET--------------------KLI  310 (447)
T ss_dssp             EEEETTTTEEEETTT----------EEECCCSEEEECCCBCCCCCCHHHHSCCSTTT--------------------CCC
T ss_pred             EEEecCCCEEEECCC----------CEeccCCEEEECCCCCcCCCCCcccccccccC--------------------cee
Confidence            667655566766542          123789999999999998764     332100                    000


Q ss_pred             cccCCCCceeEeeCceEEEEccCCcccCCceeeCCCccc--CCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHH
Q 013561          263 LSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRA--PSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA  340 (441)
Q Consensus       263 ~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt--~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA  340 (441)
                      .                         + +.+.++.+.++  ++.|++||+||+..          ..++..|..||+.+|
T Consensus       311 ~-------------------------~-~~~~~~~~~~v~~~~~p~l~~~G~~~~----------~~~~~~a~~qa~~~a  354 (447)
T 2gv8_A          311 D-------------------------D-GSHVHNVYQHIFYIPDPTLAFVGLALH----------VVPFPTSQAQAAFLA  354 (447)
T ss_dssp             S-------------------------S-SSSCCSEETTTEETTCTTEEESSCCBS----------SCHHHHHHHHHHHHH
T ss_pred             c-------------------------C-CCcccccccccccCCCCcEEEEecccc----------ccCchHHHHHHHHHH
Confidence            0                         0 44556655552  38999999999982          237899999999999


Q ss_pred             HHHHH
Q 013561          341 ELFNK  345 (441)
Q Consensus       341 ~nI~~  345 (441)
                      ++|..
T Consensus       355 ~~~~g  359 (447)
T 2gv8_A          355 RVWSG  359 (447)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            99973

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.17  E-value=2.3e-06  Score=87.42  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~  144 (441)
                      +++|+|||||..|+++|..|.+.  +.+|+++++.+.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            67999999999999999999987  8999999998865

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.16  E-value=2e-06  Score=90.89  Aligned_cols=37  Identities=11%  Similarity=0.039  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      |+..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~   57 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF   57 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence            4467999999999999999999999999999999853

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.15  E-value=8.5e-07  Score=87.93  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4689999999999999999999999999999975

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.15  E-value=6.3e-06  Score=79.59  Aligned_cols=158  Identities=21%  Similarity=0.133  Sum_probs=112.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      .++|+|||+|+.|+++|..|++.|.+|+++++.+.+...             .    .+.+.   +. ..++.++. ..+
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~-------------~----~l~~~---l~-~~gv~i~~~~~v  213 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCE-------------N----AYVQE---IK-KRNIPYIMNAQV  213 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSC-------------H----HHHHH---HH-HTTCCEECSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCC-------------H----HHHHH---Hh-cCCcEEEcCCeE
Confidence            579999999999999999999999999999988754310             0    11111   12 23566554 477


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .+++.+.+   .+.+.+..+      ++..++++|.||+|+|..|+...+...                           
T Consensus       214 ~~i~~~~~~v~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~~l~~~---------------------------  260 (319)
T 3cty_A          214 TEIVGDGKKVTGVKYKDRTT------GEEKLIETDGVFIYVGLIPQTSFLKDS---------------------------  260 (319)
T ss_dssp             EEEEESSSSEEEEEEEETTT------CCEEEECCSEEEECCCEEECCGGGTTS---------------------------
T ss_pred             EEEecCCceEEEEEEEEcCC------CceEEEecCEEEEeeCCccChHHHhhc---------------------------
Confidence            88876543   355543111      223468999999999998875322110                           


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                         |   +++            +.. |+|.||+++|| +.|+|||+|||+..        .++++..|+.||+.+|.||.
T Consensus       261 ---g---l~~------------~~~-g~i~vd~~~~t-~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~  312 (319)
T 3cty_A          261 ---G---VKL------------DER-GYIVVDSRQRT-SVPGVYAAGDVTSG--------NFAQIASAVGDGCKAALSLY  312 (319)
T ss_dssp             ---C---CCB------------CTT-SCBCCCTTCBC-SSTTEEECSTTBTT--------CCCCHHHHHHHHHHHHHHHH
T ss_pred             ---c---ccc------------cCC-ccEeCCCCCcc-CCCCEEEeecccCc--------chhhHHHHHHHHHHHHHHHH
Confidence               0   011            111 78999999999 99999999999932        25789999999999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      +.|.
T Consensus       313 ~~l~  316 (319)
T 3cty_A          313 SDSI  316 (319)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9985

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.14  E-value=2.3e-06  Score=81.27  Aligned_cols=89  Identities=8%  Similarity=-0.089  Sum_probs=64.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASCI  188 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~  188 (441)
                      +++|+|||+|+.|+++|..|.+.| +|+++++.+...                  ...+.+.   +. ..++.++...+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~------------------~~~~~~~---l~-~~gv~i~~~~v~  197 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEP------------------DADQHAL---LA-ARGVRVETTRIR  197 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCC------------------CHHHHHH---HH-HTTCEEECSCEE
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCC------------------CHHHHHH---HH-HCCcEEEcceee
Confidence            679999999999999999999999 999998876310                  1112222   22 246777767888


Q ss_pred             EEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          189 GIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       189 ~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      +++.+. .+.+.++           .++++|.||+|+|..|+.+
T Consensus       198 ~i~~~~-~v~~~~g-----------~~~~~D~vi~a~G~~p~~~  229 (297)
T 3fbs_A          198 EIAGHA-DVVLADG-----------RSIALAGLFTQPKLRITVD  229 (297)
T ss_dssp             EEETTE-EEEETTS-----------CEEEESEEEECCEEECCCS
T ss_pred             eeecCC-eEEeCCC-----------CEEEEEEEEEccCcccCch
Confidence            887654 5554432           3789999999999988754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.13  E-value=1.1e-05  Score=77.47  Aligned_cols=97  Identities=22%  Similarity=0.186  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||+|+.|+++|..|.+.|.+|+++++.+.+..             ..   ..+++    +.+..++.++.+ .+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~-------------~~---~~~~~----~~~~~gv~~~~~~~v  213 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA-------------QP---IYVET----VKKKPNVEFVLNSVV  213 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS-------------CH---HHHHH----HHTCTTEEEECSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc-------------CH---HHHHH----HHhCCCcEEEeCCEE
Confidence            57999999999999999999999999999999875541             00   01122    334457888765 58


Q ss_pred             EEEeCCCCE--EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          188 IGIDTDKHE--VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       188 ~~id~~~~~--v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      .+++.+.+.  +.+.+..+      +++.++++|.||+|+|..|+.
T Consensus       214 ~~i~~~~~~~~v~~~~~~~------g~~~~~~~D~vv~a~G~~p~~  253 (323)
T 3f8d_A          214 KEIKGDKVVKQVVVENLKT------GEIKELNVNGVFIEIGFDPPT  253 (323)
T ss_dssp             EEEEESSSEEEEEEEETTT------CCEEEEECSEEEECCCEECCH
T ss_pred             EEEeccCceeEEEEEECCC------CceEEEEcCEEEEEECCCCCh
Confidence            888766543  55554211      223478999999999998874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.13  E-value=3.3e-05  Score=80.81  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+++|+|||+|+.|+++|..|++.+.+||||++.+..
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            4789999999999999999999999999999999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.12  E-value=3.5e-06  Score=87.10  Aligned_cols=101  Identities=12%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +++|+|||||+.|+++|..|++    .|.+|+++++.+...- .        .+. ..+...+.+.   + +..++.++.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~-~--------~l~-~~~~~~~~~~---l-~~~GV~v~~  245 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-K--------ILP-EYLSNWTMEK---V-RREGVKVMP  245 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-T--------TSC-HHHHHHHHHH---H-HTTTCEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc-c--------cCC-HHHHHHHHHH---H-HhcCCEEEe
Confidence            6799999999999999999876    4789999998764321 0        011 1111122222   2 235788776


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      + .|.+++.+.+.+.+...++         .++++|.||+|+|..|+..
T Consensus       246 ~~~V~~i~~~~~~~~v~l~dG---------~~i~aD~Vv~a~G~~pn~~  285 (493)
T 1m6i_A          246 NAIVQSVGVSSGKLLIKLKDG---------RKVETDHIVAAVGLEPNVE  285 (493)
T ss_dssp             SCCEEEEEEETTEEEEEETTS---------CEEEESEEEECCCEEECCT
T ss_pred             CCEEEEEEecCCeEEEEECCC---------CEEECCEEEECCCCCccHH
Confidence            5 6888875555444443211         3789999999999998764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.09  E-value=1.4e-06  Score=89.80  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||||||++||+||..|++.|++|+|+|++++++
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G   37 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG   37 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence            5789999999999999999999999999999998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.08  E-value=5e-06  Score=87.57  Aligned_cols=36  Identities=17%  Similarity=0.082  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP   84 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            468999999999999999999999999999997653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.08  E-value=4.7e-06  Score=89.56  Aligned_cols=36  Identities=8%  Similarity=0.139  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  307 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAP  307 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            479999999999999999999999999999996543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.07  E-value=7.4e-06  Score=78.45  Aligned_cols=161  Identities=19%  Similarity=0.080  Sum_probs=115.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|.+.|.+|+++++.+.+...            .    ....+    +.+..++.++. ..+
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~------------~----~~~~~----~~~~~gv~~~~~~~v  206 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAA------------P----STVEK----VKKNEKIELITSASV  206 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSC------------H----HHHHH----HHHCTTEEEECSCEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCC------------H----HHHHH----HHhcCCeEEEeCcEE
Confidence            579999999999999999999999999999998754210            0    01122    22345788774 478


Q ss_pred             EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                      .+++.+.+.   +.+...       .+++.++++|.||+|+|..|+...++..+                          
T Consensus       207 ~~i~~~~~~~~~v~~~~~-------~g~~~~~~~D~vv~a~G~~p~~~~~~~~~--------------------------  253 (315)
T 3r9u_A          207 DEVYGDKMGVAGVKVKLK-------DGSIRDLNVPGIFTFVGLNVRNEILKQDD--------------------------  253 (315)
T ss_dssp             EEEEEETTEEEEEEEECT-------TSCEEEECCSCEEECSCEEECCGGGBCTT--------------------------
T ss_pred             EEEEcCCCcEEEEEEEcC-------CCCeEEeecCeEEEEEcCCCCchhhhccc--------------------------
Confidence            888765532   444411       12334789999999999988754222100                          


Q ss_pred             cCCCCce-eEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTV-QLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       265 ~~~G~~~-vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                          ..+ +++            +.. |+|.||+++|| +.|+|||+|||+.        ..|+++..|+.||+.+|.||
T Consensus       254 ----~~g~l~~------------~~~-g~i~vd~~~~t-~~~~v~a~GD~~~--------~~~~~~~~A~~~g~~aa~~i  307 (315)
T 3r9u_A          254 ----SKFLCNM------------EEG-GQVSVDLKMQT-SVAGLFAAGDLRK--------DAPKQVICAAGDGAVAALSA  307 (315)
T ss_dssp             ----SCBSSCB------------CTT-SCBCCCTTCBC-SSTTEEECGGGBT--------TCCCCHHHHHHHHHHHHHHH
T ss_pred             ----ccceeee------------cCC-CcEEeCCCccc-CCCCEEEeecccC--------CchhhhhhHHhhHHHHHHHH
Confidence                000 111            111 78999999999 9999999999983        24789999999999999999


Q ss_pred             HHHhc
Q 013561          344 NKKIG  348 (441)
Q Consensus       344 ~~~l~  348 (441)
                      .++|.
T Consensus       308 ~~~l~  312 (315)
T 3r9u_A          308 MAYIE  312 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.07  E-value=2.1e-06  Score=87.74  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            35899999999999999999999999999999875

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.07  E-value=3.5e-06  Score=83.49  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4689999999999999999999999999999974

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.05  E-value=1e-05  Score=79.61  Aligned_cols=170  Identities=12%  Similarity=0.069  Sum_probs=102.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCcc-ccccch-hhhhhhhcCCCC-EEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFR-SVAEPV-SRIQTSLSSDPN-SYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~-v~~~~~  185 (441)
                      .++|+|||+|+.|+++|..|++.|.+||++++.+.+.- +.        .+.. .....+ +.+.+.+. ..+ +.++.+
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~-~~--------~d~~~~~~~~~~~~l~~~l~-~~g~v~~~~~  235 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLND-PD--------ADPSVRLSPYTRQRLGNVIK-QGARIEMNVH  235 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------CTTSCCHHHHHHHHHHHH-TTCCEEEECS
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCC-CC--------CCCCccCCHHHHHHHHHHHh-hCCcEEEecC
Confidence            56999999999999999999999999999999875431 00        0000 000111 11212133 344 777654


Q ss_pred             -EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          186 -SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       186 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                       .+.+++.+.+.+.+...+       + +....+|.+|+|+|.+|+...+.                   +.   .+.. 
T Consensus       236 ~~v~~i~~~~~~~~v~~~~-------g-~~~~~~d~vi~a~G~~~~~~~~~-------------------~~---~~~~-  284 (369)
T 3d1c_A          236 YTVKDIDFNNGQYHISFDS-------G-QSVHTPHEPILATGFDATKNPIV-------------------QQ---LFVT-  284 (369)
T ss_dssp             CCEEEEEEETTEEEEEESS-------S-CCEEESSCCEECCCBCGGGSHHH-------------------HH---HSCC-
T ss_pred             cEEEEEEecCCceEEEecC-------C-eEeccCCceEEeeccCCccchhh-------------------hh---hccC-
Confidence             677775434443333211       1 11334699999999988753110                   00   0110 


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                                             .. |+|.||++++.+++|+|||+|||+..++.     ....+..|.+||+.+|+||.
T Consensus       285 -----------------------~~-g~i~v~~~~~~t~~~~v~a~GD~~~~~~~-----~~~~~~~~~~~a~~~a~~l~  335 (369)
T 3d1c_A          285 -----------------------TN-QDIKLTTHDESTRYPNIFMIGATVENDNA-----KLCYIYKFRARFAVLAHLLT  335 (369)
T ss_dssp             -----------------------TT-SCCCBCTTSBBSSSTTEEECSTTCCCSSC-----CCCSHHHHGGGHHHHHHHHH
T ss_pred             -----------------------CC-CCEEechhhcccCCCCeEEeccccccCCe-----eEEEEehhhHHHHHHHHHHh
Confidence                                   00 77999986443399999999999965421     12245578899999999999


Q ss_pred             HHhc
Q 013561          345 KKIG  348 (441)
Q Consensus       345 ~~l~  348 (441)
                      ..+.
T Consensus       336 ~~~~  339 (369)
T 3d1c_A          336 QREG  339 (369)
T ss_dssp             HHTT
T ss_pred             cccC
Confidence            7764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.04  E-value=3.8e-06  Score=83.74  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999999999999874

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.03  E-value=4.8e-06  Score=86.85  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~   40 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL   40 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            458999999999999999999999999999998643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.03  E-value=1.4e-05  Score=83.30  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++.+.+..            +     ..+.+.   +.+..++.++.+ .+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~------------~-----~~l~~~---l~~~~gV~v~~~~~v  414 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA------------D-----QVLQDK---VRSLKNVDIILNAQT  414 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS------------C-----HHHHHH---HTTCTTEEEECSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc------------C-----HHHHHH---HhcCCCcEEEeCCEE
Confidence            67999999999999999999999999999998875431            0     112221   333357777655 67


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      ++++.+.+   .+.+.+..+      +++.++++|.|++|+|..|+..
T Consensus       415 ~~i~~~~~~v~~v~~~~~~~------g~~~~i~~D~vi~a~G~~pn~~  456 (521)
T 1hyu_A          415 TEVKGDGSKVVGLEYRDRVS------GDIHSVALAGIFVQIGLLPNTH  456 (521)
T ss_dssp             EEEEECSSSEEEEEEEETTT------CCEEEEECSEEEECCCEEESCG
T ss_pred             EEEEcCCCcEEEEEEEeCCC------CceEEEEcCEEEECcCCCCCch
Confidence            78875433   345554211      2334789999999999988764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.02  E-value=9.2e-06  Score=83.30  Aligned_cols=139  Identities=11%  Similarity=0.001  Sum_probs=95.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.-.         ..                  ..++.+. ..+
T Consensus       196 ~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~---------~~------------------~~~V~~~-~~V  247 (464)
T 2xve_A          196 KDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY---------KW------------------PENWDER-PNL  247 (464)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC---------CC------------------CTTEEEC-SCE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC---------CC------------------CCceEEc-CCe
Confidence            3689999999999999999999999999999988754300         00                  0133333 455


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                      .+++  .+.|.+.++           .++++|.||+|||.+|+++.++..  .  .                 +      
T Consensus       248 ~~i~--~~~V~~~dG-----------~~i~~D~Vi~atG~~p~~~~l~~~--~--g-----------------l------  287 (464)
T 2xve_A          248 VRVD--TENAYFADG-----------SSEKVDAIILCTGYIHHFPFLNDD--L--R-----------------L------  287 (464)
T ss_dssp             EEEC--SSEEEETTS-----------CEEECSEEEECCCBCCCCTTBCTT--T--C-----------------C------
T ss_pred             EEEe--CCEEEECCC-----------CEEeCCEEEECCCCCCCCCCcCcc--c--c-----------------c------
Confidence            5664  345665442           268999999999999987644421  0  0                 0      


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeCC---CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVDE---WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~---~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                           ++.+            . |++ ++.   .++| +.|+|||+|||+.          ..+...|..||+.+|++|.
T Consensus       288 -----~~~~------------~-~~v-~~~~~~~~~t-~~p~i~aiGd~~~----------~~~~~~a~~qa~~~a~~l~  337 (464)
T 2xve_A          288 -----VTNN------------R-LWP-LNLYKGVVWE-DNPKFFYIGMQDQ----------WYSFNMFDAQAWYARDVIM  337 (464)
T ss_dssp             -----CCCS------------S-SCC-SSEETTTEES-SSTTEEECSCSCC----------SSCHHHHHHHHHHHHHHHT
T ss_pred             -----ccCC------------C-ccc-ccccceEecC-CCCCEEEEeCccc----------ccchHHHHHHHHHHHHHHc
Confidence                 0000            0 233 333   3567 8999999999882          2478899999999999997

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.02  E-value=2e-05  Score=75.87  Aligned_cols=37  Identities=16%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+++.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            5799999999999999999999999999999988654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.01  E-value=7.5e-06  Score=84.98  Aligned_cols=34  Identities=12%  Similarity=0.155  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            3589999999999999999999999999999987

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.99  E-value=3.6e-05  Score=79.72  Aligned_cols=41  Identities=7%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccC--------------CCeEEEEcCCCCccccc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTK--------------IYDAVCISPRNHMVFTP  148 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~--------------g~~Vtvie~~~~~~~~~  148 (441)
                      ...+|+|||+||+||++|..|.+.              +..++.+|+.+.+.|.+
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~   92 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHS   92 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSG
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCC
Confidence            346899999999999999888542              34678899998776543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.99  E-value=1.4e-05  Score=82.87  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   46 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER   46 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            568999999999999999999999999999998654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.98  E-value=2.4e-05  Score=75.40  Aligned_cols=97  Identities=16%  Similarity=0.156  Sum_probs=69.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      +++|+|||+|+.|+++|..|++.+.+|+++++.+.+.  +         .+     ..+++    +. ..++.++. ..+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~--~---------~~-----~~~~~----l~-~~gv~~~~~~~v  212 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR--A---------HE-----HSVEN----LH-ASKVNVLTPFVP  212 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS--S---------CH-----HHHHH----HH-HSSCEEETTEEE
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC--c---------cH-----HHHHH----Hh-cCCeEEEeCcee
Confidence            6799999999999999999999999999999987543  0         00     01122    11 24677765 478


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .+++.+.+  .+.+.+...      ++..++++|.||+|+|..|+.+
T Consensus       213 ~~i~~~~~~~~v~~~~~~~------g~~~~~~~D~vv~a~G~~p~~~  253 (332)
T 3lzw_A          213 AELIGEDKIEQLVLEEVKG------DRKEILEIDDLIVNYGFVSSLG  253 (332)
T ss_dssp             EEEECSSSCCEEEEEETTS------CCEEEEECSEEEECCCEECCCG
T ss_pred             eEEecCCceEEEEEEecCC------CceEEEECCEEEEeeccCCCch
Confidence            88876554  455655322      2235789999999999988764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.97  E-value=1.5e-05  Score=84.38  Aligned_cols=163  Identities=17%  Similarity=0.236  Sum_probs=105.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++. .+.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l--~--------~~d-~~~~~~~~~~---l~-~~gv~i~~~~~v  349 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILL--R--------GFD-QQMAEKVGDY---ME-NHGVKFAKLCVP  349 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSS--T--------TSC-HHHHHHHHHH---HH-HTTCEEEETEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCc--C--------cCC-HHHHHHHHHH---HH-hCCCEEEECCeE
Confidence            568999999999999999999999999999987 221  1        011 1122222222   22 246777654 44


Q ss_pred             EEEeC------C---CCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHH
Q 013561          188 IGIDT------D---KHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLL  258 (441)
Q Consensus       188 ~~id~------~---~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~  258 (441)
                      ..+..      +   .+.+.+.....+     +++.++++|.||+|+|.+|+...+. .+                    
T Consensus       350 ~~v~~~~~~~~~~~~~~~~~v~~~~~~-----g~~~~~~~D~vi~a~G~~p~~~~l~-~~--------------------  403 (598)
T 2x8g_A          350 DEIKQLKVVDTENNKPGLLLVKGHYTD-----GKKFEEEFETVIFAVGREPQLSKVL-CE--------------------  403 (598)
T ss_dssp             EEEEEEECCBTTTTBCCEEEEEEEETT-----SCEEEEEESEEEECSCEEECGGGTB-CG--------------------
T ss_pred             EEEEeccccccccCCCceEEEEEEeCC-----CcEEeccCCEEEEEeCCccccCccC-ch--------------------
Confidence            45531      1   134433321111     2223456999999999998764221 00                    


Q ss_pred             HhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHH
Q 013561          259 LNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKY  338 (441)
Q Consensus       259 ~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~  338 (441)
                          ..      ++++            +.. |+|.||+++|| +.|+|||+|||+.     |   .+.++..|++||+.
T Consensus       404 ----~~------gl~~------------~~~-G~i~vd~~~~t-s~~~VyA~GD~~~-----~---~~~~~~~A~~~g~~  451 (598)
T 2x8g_A          404 ----TV------GVKL------------DKN-GRVVCTDDEQT-TVSNVYAIGDINA-----G---KPQLTPVAIQAGRY  451 (598)
T ss_dssp             ----GG------CCCB------------CTT-SCBCCCTTSBC-SSTTEEECGGGBT-----T---SCCCHHHHHHHHHH
T ss_pred             ----hc------CceE------------CCC-CcEEeCCCCcC-CCCCEEEEeeecC-----C---CCccHHHHHHhHHH
Confidence                00      0111            111 78999999999 9999999999972     2   36789999999999


Q ss_pred             HHHHHHH
Q 013561          339 LAELFNK  345 (441)
Q Consensus       339 aA~nI~~  345 (441)
                      +|.||..
T Consensus       452 aa~~i~~  458 (598)
T 2x8g_A          452 LARRLFA  458 (598)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999974

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.96  E-value=1.5e-06  Score=87.01  Aligned_cols=88  Identities=14%  Similarity=0.017  Sum_probs=60.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|||+++.+++.-.         ..+ ..+...+.+.   + +..++.++.+ .+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~---------~~~-~~~~~~~~~~---l-~~~gV~~~~~~~v  211 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER---------QLD-RDGGLFLKDK---L-DRLGIKIYTNSNF  211 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT---------TSC-HHHHHHHHHH---H-HTTTCEEECSCCG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh---------hcC-HHHHHHHHHH---H-HhCCCEEEeCCEE
Confidence            578999999999999999999999999999999865411         011 1122222222   2 2356766543 22


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      .++           +           .++++|.||+|+|.+|+..
T Consensus       212 ~~i-----------g-----------~~~~~D~vv~a~G~~p~~~  234 (385)
T 3klj_A          212 EEM-----------G-----------DLIRSSCVITAVGVKPNLD  234 (385)
T ss_dssp             GGC-----------H-----------HHHHHSEEEECCCEEECCG
T ss_pred             EEc-----------C-----------eEEecCeEEECcCcccChh
Confidence            222           1           3689999999999998764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.96  E-value=5.8e-06  Score=82.43  Aligned_cols=34  Identities=6%  Similarity=-0.035  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g-~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++ .| ++|+|||+.+
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            4689999999999999999999 89 9999999976

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.95  E-value=1.1e-05  Score=84.82  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~  161 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI  161 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            468999999999999999999999999999998755

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.94  E-value=1.8e-05  Score=81.87  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR   47 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            568999999999999999999999999999998654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.92  E-value=3.4e-05  Score=75.70  Aligned_cols=37  Identities=11%  Similarity=0.024  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++|+++|..|++.  |++|+|||+.+...
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            45899999999999999999986  99999999987553

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.92  E-value=8.5e-06  Score=84.45  Aligned_cols=101  Identities=11%  Similarity=0.155  Sum_probs=64.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--------------CCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--------------IYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLS  175 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--------------g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~  175 (441)
                      .+++||||||+|+++|..|+..              +.+|+|+|..+++.  +.        . ++.+...+.+.   +.
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il--~~--------~-~~~~~~~~~~~---L~  283 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL--NM--------F-EKKLSSYAQSH---LE  283 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS--TT--------S-CHHHHHHHHHH---HH
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc--cC--------C-CHHHHHHHHHH---HH
Confidence            4799999999999999887642              36899999998765  11        1 11222223332   22


Q ss_pred             CCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          176 SDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       176 ~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                       ..+|+++.+ .|.+++.+  .+.+.....++   +..+.++++|.||.|+|.+|+
T Consensus       284 -~~GV~v~~~~~v~~v~~~--~~~~~~~~~dg---~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          284 -NTSIKVHLRTAVAKVEEK--QLLAKTKHEDG---KITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             -HTTCEEETTEEEEEECSS--EEEEEEECTTS---CEEEEEEECSEEEECCCEECC
T ss_pred             -hcceeeecCceEEEEeCC--ceEEEEEecCc---ccceeeeccCEEEEccCCcCC
Confidence             347777654 78888754  44443321111   011246899999999998875

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.90  E-value=3.7e-06  Score=82.04  Aligned_cols=67  Identities=9%  Similarity=0.050  Sum_probs=47.9

Q ss_pred             cccCccchhhhhcccccccccCCCCCCCCC--C-----------------CCCCcEEEECCCHHHHHHHHhhccC--CCe
Q 013561           76 HYQYHNAERIVEESESEYQELSYPGLEATK--P-----------------GEKPRVVVLGTGWGACRFLKGIDTK--IYD  134 (441)
Q Consensus        76 ~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~--~-----------------~~~k~VvIIGgG~aGl~aA~~L~~~--g~~  134 (441)
                      .++++.+|+++.|...+   ..|+.+..++  .                 ....+|+|||||++|+++|..|++.  |++
T Consensus        16 ~v~~~~~er~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~~   92 (326)
T 2gjc_A           16 HLNSTPVTHCLSDIVKK---EDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLK   92 (326)
T ss_dssp             CGGGSCCCCTTTTTCCS---TTCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSC
T ss_pred             ccchHHHHHHHHHHHHh---cCCCccccccccccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCe
Confidence            45666688888886655   3443322111  0                 0112899999999999999999987  999


Q ss_pred             EEEEcCCCCcc
Q 013561          135 AVCISPRNHMV  145 (441)
Q Consensus       135 Vtvie~~~~~~  145 (441)
                      |+|+|+.+...
T Consensus        93 V~v~e~~~~~g  103 (326)
T 2gjc_A           93 VCIIESSVAPG  103 (326)
T ss_dssp             EEEECSSSSCC
T ss_pred             EEEEecCcccc
Confidence            99999987653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.90  E-value=0.00013  Score=76.45  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+++|+|||+|+.|+++|..|++.+.+||+|++.+..
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            3789999999999999999999999999999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.84  E-value=2.3e-05  Score=84.37  Aligned_cols=150  Identities=14%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             CCcEEEEC--CCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          109 KPRVVVLG--TGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       109 ~k~VvIIG--gG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .++|+|||  +|+.|+++|..|++.|.+|+++++.+.+.-  .        .........+.+.   +. ..++.++.+ 
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~--~--------~~~~~~~~~l~~~---l~-~~GV~i~~~~  588 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSS--W--------TNNTFEVNRIQRR---LI-ENGVARVTDH  588 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTG--G--------GGGGTCHHHHHHH---HH-HTTCEEEESE
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccc--c--------cccchhHHHHHHH---HH-HCCCEEEcCc
Confidence            67899999  999999999999999999999999876541  0        0111111122222   22 347777765 


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .|++|+.+.  +.+....+      ++..++++|.||+|+|.+|+..    .      +      ..+...         
T Consensus       589 ~V~~i~~~~--~~v~~~~~------~~~~~i~aD~VV~A~G~~p~~~----l------~------~~l~~~---------  635 (690)
T 3k30_A          589 AVVAVGAGG--VTVRDTYA------SIERELECDAVVMVTARLPREE----L------Y------LDLVAR---------  635 (690)
T ss_dssp             EEEEEETTE--EEEEETTT------CCEEEEECSEEEEESCEEECCH----H------H------HHHHHH---------
T ss_pred             EEEEEECCe--EEEEEccC------CeEEEEECCEEEECCCCCCChH----H------H------HHHhhh---------
Confidence            788887643  44443211      1235789999999999988642    0      0      000000         


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                                               +.       +| +.|+|||+|||+.          ++.+..|+.||+.+|.||.+
T Consensus       636 -------------------------~~-------~t-~~~~VyaiGD~~~----------~~~~~~A~~~g~~aa~~i~~  672 (690)
T 3k30_A          636 -------------------------RD-------AG-EIASVRGIGDAWA----------PGTIAAAVWSGRRAAEEFDA  672 (690)
T ss_dssp             -------------------------HH-------HT-SCSEEEECGGGTS----------CBCHHHHHHHHHHHHHHTTC
T ss_pred             -------------------------hc-------cc-CCCCEEEEeCCCc----------hhhHHHHHHHHHHHHHHHHh
Confidence                                     11       67 8999999999992          45677899999999999998


Q ss_pred             Hhc
Q 013561          346 KIG  348 (441)
Q Consensus       346 ~l~  348 (441)
                      .|.
T Consensus       673 ~l~  675 (690)
T 3k30_A          673 VLP  675 (690)
T ss_dssp             CCC
T ss_pred             hcc
Confidence            875

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.83  E-value=1.5e-05  Score=83.71  Aligned_cols=36  Identities=11%  Similarity=0.129  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~  156 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS  156 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            458999999999999999999999999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.81  E-value=1.2e-05  Score=80.03  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ||+||||||+|+++|..|++.|++|+|||+.+..
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            7999999999999999999999999999997654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.77  E-value=2.1e-05  Score=76.49  Aligned_cols=167  Identities=15%  Similarity=0.172  Sum_probs=100.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC-CcccccchhhhhcCCCCccccc-----------------cch-hh
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN-HMVFTPLLASTCVGTLEFRSVA-----------------EPV-SR  169 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~-~~~~~~ll~~~~~g~~~~~~~~-----------------~~~-~~  169 (441)
                      +++|+|||+|+.|+++|..|++.+ +|+++.+.+ .+.-............. +...                 ..+ ..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERAT-ERWKAQQEGREPDLPPGGFGDIVMVPP  240 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-----------------------CBCCCHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHH-HHHhccccccCCCcccccccCcccChh
Confidence            679999999999999999999988 799998874 32210000000000000 0000                 000 00


Q ss_pred             hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhH
Q 013561          170 IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNH  249 (441)
Q Consensus       170 ~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~  249 (441)
                      ....+.  .++......+..++.  +.+.+.++           .++++|.||+|+|.+|+.+-+...            
T Consensus       241 ~~~~~~--~g~i~~~~~v~~~~~--~~v~~~~g-----------~~i~~D~vi~a~G~~p~~~~l~~~------------  293 (357)
T 4a9w_A          241 VLDARA--RGVLAAVPPPARFSP--TGMQWADG-----------TERAFDAVIWCTGFRPALSHLKGL------------  293 (357)
T ss_dssp             HHHHHH--TTCCCEECCCSEEET--TEEECTTS-----------CEEECSEEEECCCBCCCCGGGTTT------------
T ss_pred             HHHHHh--cCceEEecCcceEeC--CeeEECCC-----------CEecCCEEEECCCcCCCCcccCcc------------
Confidence            000011  122222334444443  33443331           378999999999999876422211            


Q ss_pred             HHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCC--cccCCCCCEEEec--ccccccccCCCCCC
Q 013561          250 AQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW--LRAPSVEDVFALG--DCAGFLEQTGKPVL  325 (441)
Q Consensus       250 a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~--lqt~~~~~VfA~G--D~a~~~~~~G~~~~  325 (441)
                                .+.                        +.. |+|.||++  ++| +.|+|||+|  ||+.        +.
T Consensus       294 ----------gl~------------------------~~~-G~i~vd~~~l~~t-~~~~vya~Gd~d~~~--------~~  329 (357)
T 4a9w_A          294 ----------DLV------------------------TPQ-GQVEVDGSGLRAL-AVPSVWLLGYGDWNG--------MA  329 (357)
T ss_dssp             ----------TCB------------------------CTT-SCBCBCTTSCBBS-SCTTEEECSSCGGGS--------TT
T ss_pred             ----------ccc------------------------CCC-CCccccCCcccCC-CCCCeEEeccccccc--------cc
Confidence                      000                        001 78999999  777 999999999  5552        24


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhc
Q 013561          326 PALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       326 p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      +.++..|++||+.+|+||.+.|.
T Consensus       330 ~~~~~~A~~~g~~~a~~i~~~l~  352 (357)
T 4a9w_A          330 SATLIGVTRYAREAVRQVTAYCA  352 (357)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH
Confidence            56788899999999999999986

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.76  E-value=1.2e-05  Score=82.90  Aligned_cols=37  Identities=14%  Similarity=0.077  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++||+||..|++ .|++|+|+|++++++
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            4589999999999999999987 599999999999876

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.73  E-value=2.2e-05  Score=78.89  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||+||..|++.| ++|+|+|++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            568999999999999999999999 9999999988764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.73  E-value=2.1e-05  Score=80.30  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~  145 (441)
                      +++|+|||||.+||++|.+|++.|+  +|+|+|++++.+
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            4689999999999999999999999  999999998775

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.73  E-value=2.6e-05  Score=77.71  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC-CCcc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR-NHMV  145 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~-~~~~  145 (441)
                      .+++|+|||||++||++|..|.+.|++|+|+|++ ++++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG   81 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccC
Confidence            4679999999999999999999999999999999 7664

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.71  E-value=2e-05  Score=81.75  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .++|+|||||++||+||..|++.|++|+|+|++++.
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            468999999999999999999999999999998765

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.70  E-value=2.4e-05  Score=78.78  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ++|+|||||++||++|..|++.|++|+|+|++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            37999999999999999999999999999998754

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.69  E-value=2e-05  Score=79.95  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            5789999999999999999999999999999986

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.68  E-value=7.1e-06  Score=89.28  Aligned_cols=97  Identities=8%  Similarity=-0.002  Sum_probs=61.9

Q ss_pred             cCCCcccCCCcccccccccCcCCCCcCCCcccCccchhhhhccccccc-ccCC--CCCCCCCCCCCCcEEEECCCHHHHH
Q 013561           47 RNSSLSYLPSSIRMTTHMSSWSRGIKTTPHYQYHNAERIVEESESEYQ-ELSY--PGLEATKPGEKPRVVVLGTGWGACR  123 (441)
Q Consensus        47 ~~~~~~~~~grvcp~~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~-~~~~--~~~~~~~~~~~k~VvIIGgG~aGl~  123 (441)
                      ..|++..++.+.|...+++.+...+.  ....+..+++++.+...... ....  ...+.+.....++|+|||||++|++
T Consensus       273 ~~np~~~l~~~~~~~~~~~r~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~Gl~  350 (776)
T 4gut_A          273 YTNCKEALTPQKCIPHIIVRGLVRIR--CVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLA  350 (776)
T ss_dssp             HHCTTSCCCHHHHGGGCCCSSTHHHH--HHHHHHHHHHHHHHHTSSSCTTCCCCGGGCSSCGGGTSCEEEEECCSHHHHH
T ss_pred             HHCCceeeeHHHhhhhcccccccccc--cHHHHHHHHHHHHHhhhhhcccccccccccCCCCCCCCCeEEEECCCHHHHH
Confidence            45888888888887666654432211  11223456677776443211 0000  0111222334579999999999999


Q ss_pred             HHHhhccCCCeEEEEcCCCCcc
Q 013561          124 FLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       124 aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|..|++.|++|+|+|+.+..+
T Consensus       351 aA~~l~~~g~~v~v~E~~~~~g  372 (776)
T 4gut_A          351 AARQLHNFGIKVTVLEAKDRIG  372 (776)
T ss_dssp             HHHHHHHHTCEEEEECSSSSSC
T ss_pred             HHHHHHHCCCcEEEEeccccee
Confidence            9999999999999999977554

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.68  E-value=7.4e-05  Score=80.12  Aligned_cols=29  Identities=10%  Similarity=-0.019  Sum_probs=25.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVC  137 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtv  137 (441)
                      +++|+|||||+.|+++|..|++.|.+|++
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence            67999999999999999999988865553

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.67  E-value=2.5e-05  Score=76.37  Aligned_cols=35  Identities=9%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            45899999999999999999999999999999863

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.67  E-value=2.7e-05  Score=78.16  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ++|+|||||.+||++|..|++.|++|+|+|+++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            37999999999999999999999999999998764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.66  E-value=1.8e-05  Score=82.14  Aligned_cols=37  Identities=16%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||+||..|.+.| ++|+|+|++++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riG   45 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence            468999999999999999999999 9999999988654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.66  E-value=0.00011  Score=79.48  Aligned_cols=158  Identities=16%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             CCcEEEEC--CCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          109 KPRVVVLG--TGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       109 ~k~VvIIG--gG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      +++|+|||  ||+.|+++|..|++.|.+||++++.+ +.  +..   .   ....  ...+.+.   +. ..++.++.+ 
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~--~~~---~---~~~~--~~~~~~~---l~-~~GV~i~~~~  592 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LA--NYM---H---FTLE--YPNMMRR---LH-ELHVEELGDH  592 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TT--HHH---H---HTTC--HHHHHHH---HH-HTTCEEECSE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cc--ccc---c---cccc--HHHHHHH---HH-hCCCEEEcCc
Confidence            67999999  99999999999999999999999987 43  100   0   0000  1112222   22 347777665 


Q ss_pred             EEEEEeCCCCEEEEEecCCCC-C-----------CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHH
Q 013561          186 SCIGIDTDKHEVYCETVNNGK-L-----------SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEI  253 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~-~-----------~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~  253 (441)
                      .+++|+.+  .+.+.....++ .           ...+++.++++|.||+|+|.+|+..-          +         
T Consensus       593 ~v~~i~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l----------~---------  651 (729)
T 1o94_A          593 FCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTL----------W---------  651 (729)
T ss_dssp             EEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHH----------H---------
T ss_pred             EEEEEECC--eEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHH----------H---------
Confidence            68888754  34444321110 0           01122335899999999998886420          0         


Q ss_pred             HHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561          254 RKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE  333 (441)
Q Consensus       254 ~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~  333 (441)
                       ..+.                                  ..||+++|| ++|+|||+|||+.          +.++..|+
T Consensus       652 -~~l~----------------------------------~~vd~~~~t-~~~~VyAiGD~~~----------~~~~~~A~  685 (729)
T 1o94_A          652 -NELK----------------------------------ARESEWAEN-DIKGIYLIGDAEA----------PRLIADAT  685 (729)
T ss_dssp             -HHHH----------------------------------HTGGGTGGG-TCCEEEECGGGTS----------CCCHHHHH
T ss_pred             -HHHh----------------------------------hhccccccc-CCCCeEEEeCccc----------hhhHHHHH
Confidence             0000                                  125788999 9999999999982          46788999


Q ss_pred             HHHHHHHHHHHHHhc
Q 013561          334 RQGKYLAELFNKKIG  348 (441)
Q Consensus       334 ~qg~~aA~nI~~~l~  348 (441)
                      +||+.+|.||.+.+.
T Consensus       686 ~~G~~aA~~i~~~l~  700 (729)
T 1o94_A          686 FTGHRVAREIEEANP  700 (729)
T ss_dssp             HHHHHHHHTTTSSCT
T ss_pred             HHHHHHHHHhhhhcc
Confidence            999999999987664

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.65  E-value=3.6e-05  Score=79.03  Aligned_cols=37  Identities=22%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||++|..|++.|++|+|+|++++.+
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G   47 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG   47 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            5699999999999999999999999999999998764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.64  E-value=1.6e-05  Score=80.73  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC------CeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI------YDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g------~~Vtvie~~~~~~  145 (441)
                      +++|+|||||++||++|..|++.|      ++|+|+|++++.+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence            468999999999999999999999      9999999987653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.64  E-value=2.7e-05  Score=78.44  Aligned_cols=36  Identities=8%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+|+|||||++|+++|..|++.|++|+|+|++++++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~G   37 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG   37 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcc
Confidence            479999999999999999999999999999987654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.63  E-value=3.8e-05  Score=78.41  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||.+||++|..|++.|++|+|+|++++.+
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            4689999999999999999999999999999999875

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.60  E-value=3.7e-05  Score=77.15  Aligned_cols=36  Identities=8%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCe-EEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYD-AVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~-Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++ |+|||+.+..
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            56899999999999999999999999 9999998754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.56  E-value=4.8e-05  Score=78.29  Aligned_cols=37  Identities=11%  Similarity=0.079  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +++|+|||||++||++|..|++.|++|+|+|++++.+
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   69 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            5799999999999999999999999999999987653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.55  E-value=3.6e-05  Score=75.78  Aligned_cols=35  Identities=11%  Similarity=0.094  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .++|+|||||++|+++|..|+ .|++|+|+|+.+..
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            579999999999999999999 59999999998654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.54  E-value=5.2e-05  Score=77.46  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||++|..|++.|++|+|+|++++.+
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   52 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence            5689999999999999999999999999999998653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.54  E-value=3.9e-05  Score=78.45  Aligned_cols=168  Identities=22%  Similarity=0.190  Sum_probs=101.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      .+++|+|||||..|+.+|..+.+.|. +||++++.+...+....          .    .+...    . ..++.|+.. 
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~----------~----e~~~~----~-~~Gv~~~~~~  323 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQ----------R----EVAHA----E-EEGVEFIWQA  323 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCH----------H----HHHHH----H-HTTCEEECCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCH----------H----HHHHH----H-HCCCEEEeCC
Confidence            47899999999999999999999887 59999998754211100          0    01111    1 123333221 


Q ss_pred             EEEEEeCCCCE--EEEEe-----c-CCCCC---CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHH
Q 013561          186 SCIGIDTDKHE--VYCET-----V-NNGKL---SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIR  254 (441)
Q Consensus       186 ~v~~id~~~~~--v~~~~-----~-~~~~~---~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~  254 (441)
                      .++++..+.+.  +.+..     . .++..   ..++++.++++|.||+|+|..|+...   .                 
T Consensus       324 ~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~---~-----------------  383 (456)
T 2vdc_G          324 APEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLP---N-----------------  383 (456)
T ss_dssp             SSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHH---H-----------------
T ss_pred             CceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcch---h-----------------
Confidence            11111110000  11110     0 00000   00122357899999999998775320   0                 


Q ss_pred             HHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCC-cccCCCCCEEEecccccccccCCCCCCCchHHHHH
Q 013561          255 KKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEW-LRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAE  333 (441)
Q Consensus       255 ~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~-lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~  333 (441)
                        +....      |   +++            +.. |+|.||++ +|| +.|+|||+|||+.         .|.+++.|+
T Consensus       384 --~l~~~------g---l~~------------~~~-G~i~vd~~~~~T-s~~~VfA~GD~~~---------g~~~v~~A~  429 (456)
T 2vdc_G          384 --AFDEP------E---LKV------------TRW-GTLLVDHRTKMT-NMDGVFAAGDIVR---------GASLVVWAI  429 (456)
T ss_dssp             --HHHST------T---SCB------------CTT-SSBCCCTTTCBC-SSTTEEECGGGGS---------SCCSHHHHH
T ss_pred             --hcccC------C---eeE------------CCC-CCEEECCCCCcC-CCCCEEEeccccC---------CchHHHHHH
Confidence              00000      0   111            111 78999997 999 9999999999992         468999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 013561          334 RQGKYLAELFNKKIG  348 (441)
Q Consensus       334 ~qg~~aA~nI~~~l~  348 (441)
                      .||+.||.+|..+|.
T Consensus       430 ~~G~~aA~~i~~~L~  444 (456)
T 2vdc_G          430 RDGRDAAEGIHAYAK  444 (456)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999996

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.53  E-value=3.3e-05  Score=78.35  Aligned_cols=37  Identities=14%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||++|..|++.|++|+|+|++++++
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            4589999999999999999999999999999988764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.53  E-value=6e-05  Score=77.60  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++||++|..|++.|++|+|+|++++++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            5799999999999999999999999999999998763

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.53  E-value=4.9e-05  Score=78.13  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ++|+|||||++||++|..|++.|++|+|+|+++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI   74 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            58999999999999999999999999999998765

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.52  E-value=5.5e-05  Score=75.91  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++|+++|..|++. |++|+|+|++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            56899999999999999999998 99999999998775

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.51  E-value=7.3e-05  Score=73.51  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +..+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            35689999999999999999999999999999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.49  E-value=8.3e-05  Score=74.23  Aligned_cols=37  Identities=16%  Similarity=0.364  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|++++.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            3589999999999999999999999999999998775

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.48  E-value=7.6e-05  Score=75.37  Aligned_cols=35  Identities=11%  Similarity=0.238  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            4689999999999999999999999 9999999864

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.46  E-value=6.9e-05  Score=76.52  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~  144 (441)
                      +++|+|||||++|+++|..|++.|  ++|+|+|+++..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            569999999999999999999999  999999998764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.46  E-value=6.3e-05  Score=74.73  Aligned_cols=35  Identities=11%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~  144 (441)
                      ++|+|||||++|+++|..|++.  |++|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3799999999999999999998  9999999998765

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.46  E-value=5.6e-05  Score=75.24  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999763

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.44  E-value=8.9e-05  Score=74.38  Aligned_cols=37  Identities=11%  Similarity=0.254  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|++++++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            5689999999999999999999999999999998775

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.41  E-value=0.00017  Score=80.54  Aligned_cols=151  Identities=13%  Similarity=0.153  Sum_probs=105.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||+|+.|+++|..|++.|.+|+|+++.+.+.     .         .     .+.    +. ..++.++.+ .+
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-----~---------~-----~~~----l~-~~GV~v~~~~~v  339 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-----A---------A-----AAQ----AV-ADGVQVISGSVV  339 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-----H---------H-----HHH----HH-HTTCCEEETEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-----h---------h-----HHH----HH-hCCeEEEeCCEe
Confidence            5789999999999999999999999999999987543     0         0     111    22 236666655 67


Q ss_pred             EEEeC--CCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          188 IGIDT--DKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       188 ~~id~--~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      .+|+.  +.+  .+.+.+.+..+  ..++..++++|.|++|+|.+|+...                    ...       
T Consensus       340 ~~i~~~~~~~v~~v~~~~~~~~~--~~G~~~~i~~D~Vv~a~G~~P~~~l--------------------~~~-------  390 (965)
T 2gag_A          340 VDTEADENGELSAIVVAELDEAR--ELGGTQRFEADVLAVAGGFNPVVHL--------------------HSQ-------  390 (965)
T ss_dssp             EEEEECTTSCEEEEEEEEECTTC--CEEEEEEEECSEEEEECCEEECCHH--------------------HHH-------
T ss_pred             EEEeccCCCCEEEEEEEeccccC--CCCceEEEEcCEEEECCCcCcChHH--------------------HHh-------
Confidence            88875  333  45555410000  0011247899999999999887420                    000       


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcc-----cCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLR-----APSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKY  338 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lq-----t~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~  338 (441)
                      .+                         |.|.||++++     | +.|+|||+|||+..         +.+ ..|+.||+.
T Consensus       391 ~~-------------------------g~i~vd~~~~~~v~~t-s~p~IyAaGD~a~~---------~~l-~~A~~~G~~  434 (965)
T 2gag_A          391 RQ-------------------------GKLDWDTTIHAFVPAD-AVANQHLAGAMTGR---------LDT-ASALSTGAA  434 (965)
T ss_dssp             TT-------------------------CCEEEETTTTEEEECS-CCTTEEECGGGGTC---------CSH-HHHHHHHHH
T ss_pred             CC-------------------------CcEEEcCcccccccCC-CCCCEEEEEecCCc---------hhH-HHHHHHHHH
Confidence            01                         5688898887     6 89999999999932         334 489999999


Q ss_pred             HHHHHHHHhc
Q 013561          339 LAELFNKKIG  348 (441)
Q Consensus       339 aA~nI~~~l~  348 (441)
                      +|.||...+.
T Consensus       435 aA~~i~~~lg  444 (965)
T 2gag_A          435 TGAAAATAAG  444 (965)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998884

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.40  E-value=0.00011  Score=76.76  Aligned_cols=34  Identities=9%  Similarity=0.152  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~  142 (441)
                      .++|||||||++|+++|..|++   .|++|+|||+.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            5789999999999999999999   999999999975

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.39  E-value=9.5e-05  Score=73.09  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            35899999999999999999999999999999763

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.34  E-value=8.2e-05  Score=73.16  Aligned_cols=34  Identities=6%  Similarity=-0.018  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~   36 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP   36 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4899999999999999999999999999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.33  E-value=0.00017  Score=77.50  Aligned_cols=36  Identities=6%  Similarity=0.001  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||.+|+++|..|++.|++|+|||+.+..
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            468999999999999999999999999999997543

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.32  E-value=0.00015  Score=74.67  Aligned_cols=37  Identities=11%  Similarity=0.041  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~~  145 (441)
                      .++|+|||||++|+++|..|++.| .+|+|+|++++++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            568999999999999999999998 7999999998764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.32  E-value=0.00014  Score=72.18  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+|+|||||++|+++|..|++.|++|+|+|++++++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            379999999999999999999999999999998765

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.30  E-value=0.00028  Score=79.33  Aligned_cols=167  Identities=18%  Similarity=0.093  Sum_probs=105.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      +++|+|||||+.|+++|..+.+.|. +||++++.+.... +.         ...+    +..    +. ..++.|+.. .
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~-~~---------~~~e----~~~----~~-~~Gv~~~~~~~  392 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNI-RA---------VPEE----VEL----AK-EEKCEFLPFLS  392 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGC-CS---------CHHH----HHH----HH-HTTCEEECSEE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhC-CC---------CHHH----HHH----HH-HcCCEEEeCCC
Confidence            5699999999999999999999996 8999999873220 10         0111    111    11 235655432 4


Q ss_pred             EEEEeCCCCEE---EEEec--CCCCC--CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHH
Q 013561          187 CIGIDTDKHEV---YCETV--NNGKL--SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLL  259 (441)
Q Consensus       187 v~~id~~~~~v---~~~~~--~~~~~--~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~  259 (441)
                      +.++..++..+   .+...  +.++.  ..++++.++++|.||+|+|..|+...   +                ..    
T Consensus       393 ~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~---l----------------~~----  449 (1025)
T 1gte_A          393 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPK---V----------------KE----  449 (1025)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHH---H----------------HH----
T ss_pred             ceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchh---h----------------hh----
Confidence            45554322222   22210  00000  00122347899999999998763211   0                00    


Q ss_pred             hcccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHH
Q 013561          260 NLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKY  338 (441)
Q Consensus       260 ~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~  338 (441)
                      .+  .      ++++.            .. |+|.||+ ++|| +.|+|||+|||+.         .|.+++.|++||+.
T Consensus       450 ~~--~------gl~~~------------~~-G~I~vd~~~~~T-s~~~VfA~GD~~~---------~~~~~~~A~~~G~~  498 (1025)
T 1gte_A          450 AL--S------PIKFN------------RW-DLPEVDPETMQT-SEPWVFAGGDIVG---------MANTTVESVNDGKQ  498 (1025)
T ss_dssp             HT--T------TSCBC------------TT-SSBCCCTTTCBC-SSTTEEECSGGGC---------SCCCHHHHHHHHHH
T ss_pred             cc--c------CceEC------------CC-CCEEECCCCCcc-CCCCEEEeCCCCC---------CchHHHHHHHHHHH
Confidence            00  0      01111            11 7899997 8999 9999999999992         36799999999999


Q ss_pred             HHHHHHHHhc
Q 013561          339 LAELFNKKIG  348 (441)
Q Consensus       339 aA~nI~~~l~  348 (441)
                      ||.+|..+|.
T Consensus       499 aA~~i~~~L~  508 (1025)
T 1gte_A          499 ASWYIHKYIQ  508 (1025)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998885

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.29  E-value=0.00083  Score=68.55  Aligned_cols=181  Identities=16%  Similarity=0.162  Sum_probs=109.1

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccC--------------------CC-eEEEEcCCCCcc--cccc-------hhhhhcCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTK--------------------IY-DAVCISPRNHMV--FTPL-------LASTCVGT  157 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~--------------------g~-~Vtvie~~~~~~--~~~l-------l~~~~~g~  157 (441)
                      .+++|+|||+|+.|+++|..|++.                    |. +|+||++.+.+.  |++.       ++.... .
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~-~  224 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDV-V  224 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEE-E
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCcee-e
Confidence            367999999999999999999863                    54 999999987542  2210       110000 0


Q ss_pred             CCccccccc----------h----hhhhhhhcCC------CCEEEEEE-EEEEEeCCCC--EEEEEecC--CCC-----C
Q 013561          158 LEFRSVAEP----------V----SRIQTSLSSD------PNSYFYLA-SCIGIDTDKH--EVYCETVN--NGK-----L  207 (441)
Q Consensus       158 ~~~~~~~~~----------~----~~~~~~~~~~------~~v~~~~~-~v~~id~~~~--~v~~~~~~--~~~-----~  207 (441)
                      ..++++...          .    .+........      .++.++.. .+.+|..+.+  .+.+....  .++     .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~  304 (456)
T 1lqt_A          225 IDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAA  304 (456)
T ss_dssp             CCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEE
T ss_pred             eChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccc
Confidence            001111000          0    0111111122      46776654 6777765432  35554210  000     0


Q ss_pred             CCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCc
Q 013561          208 SHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFL  287 (441)
Q Consensus       208 ~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~  287 (441)
                      ...++..++++|.||+|+|.+|+.  ++|.     .                                          ++
T Consensus       305 ~~~g~~~~i~~d~vi~a~G~~p~~--l~gl-----~------------------------------------------~d  335 (456)
T 1lqt_A          305 KDTGEREELPAQLVVRSVGYRGVP--TPGL-----P------------------------------------------FD  335 (456)
T ss_dssp             EEEEEEEEEECSEEEECSCEECCC--CTTS-----C------------------------------------------CB
T ss_pred             cCCCceEEEEcCEEEEccccccCC--CCCC-----c------------------------------------------cc
Confidence            001223468999999999998876  2342     0                                          11


Q ss_pred             ccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCc-hHHHHHHHHHHHHHHHHHHhc
Q 013561          288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPA-LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       288 ~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~-~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      .. |+|.||+++|+++.|+|||+|||+..         |. .+..|+.||+.+|.||.+.+.
T Consensus       336 ~~-g~i~vn~~~rvt~~pgvya~GD~~~g---------p~~~i~~a~~~g~~~a~~i~~~l~  387 (456)
T 1lqt_A          336 DQ-SGTIPNVGGRINGSPNEYVVGWIKRG---------PTGVIGTNKKDAQDTVDTLIKNLG  387 (456)
T ss_dssp             TT-TTBCCEETTEETTCSSEEECTHHHHC---------SCSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCeeECCCCcCCCCCCEEEEeccCCC---------CchhHHHHHHHHHHHHHHHHHHHH
Confidence            11 67899999994499999999999832         33 345799999999999998886

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.29  E-value=0.00016  Score=71.87  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|||||+||+++|..|++.|++|+|||+++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            589999999999999999999999999999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.28  E-value=0.00016  Score=75.26  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++   .|++|+|||+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            5689999999999999999999   999999999965

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.27  E-value=0.00013  Score=76.38  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .+|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            58999999999999999999999999999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.23  E-value=0.00065  Score=69.42  Aligned_cols=49  Identities=8%  Similarity=0.042  Sum_probs=41.3

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCc-hHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPA-LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~-~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |+|.||+++||.+.|+|||+|||+.         .|. .+..|+.||+.+|.||...|.
T Consensus       346 g~i~vn~~~rt~~~p~vya~Gd~~~---------g~~~~i~~a~~~g~~aa~~i~~~l~  395 (460)
T 1cjc_A          346 LGVVPNMEGRVVDVPGLYCSGWVKR---------GPTGVITTTMTDSFLTGQILLQDLK  395 (460)
T ss_dssp             TTBCCEETTEETTCTTEEECTHHHH---------CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeECCCCcCcCCCCEEEEEeCCc---------CCCccHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999933799999999993         133 466899999999999999886

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.22  E-value=0.00014  Score=75.11  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~  142 (441)
                      .++|+|||||++|+++|..|++   .|++|+|||+.+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            4589999999999999999999   999999999975

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.19  E-value=0.0002  Score=74.37  Aligned_cols=35  Identities=9%  Similarity=0.107  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc------------CCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT------------KIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~------------~g~~Vtvie~~~~  143 (441)
                      .++|+|||||+||+.+|..|++            .|++|+|||+.+.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            4689999999999999999999            8999999998653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.16  E-value=0.00029  Score=71.33  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||+|++|+.+|..|++.|++|+|+|++++.+
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            4689999999999999999999999999999998765

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.16  E-value=0.00017  Score=70.55  Aligned_cols=32  Identities=28%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCC------CeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI------YDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g------~~Vtvie~~~  142 (441)
                      +|+|||||.+|+++|..|++.|      ++|+|+|+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            7999999999999999999987      9999999986

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.12  E-value=0.00029  Score=75.09  Aligned_cols=36  Identities=8%  Similarity=0.150  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~~  144 (441)
                      ..+|+||||||+|+++|..|++ .|++|+|||+.+..
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            3589999999999999999999 99999999998654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.11  E-value=0.00027  Score=73.05  Aligned_cols=34  Identities=9%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4589999999999999999999999999999975

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.11  E-value=0.00017  Score=73.10  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~  141 (441)
                      ..+|+|||||++|+++|..|++.| ++|+|||++
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            468999999999999999999999 999999993

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.10  E-value=0.0002  Score=75.44  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC------CCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK------IYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~------g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||+||+++|..|++.      |++|+|||+.+..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence            36899999999999999999998      9999999998754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.07  E-value=0.00022  Score=71.40  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      .+|+|||||++|+++|..|++.  |++|+|||+.+
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999998  99999999975

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.05  E-value=0.00036  Score=72.26  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            358999999999999999999999999999998754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=96.96  E-value=0.00045  Score=70.76  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +..+|+|||+|.+|+.+|..|++.|++|+|+|++++.+
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            35689999999999999999999999999999998765

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.93  E-value=0.00055  Score=69.88  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+.+|..|.+.|+ +|+|+|+++++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            4689999999999999999999998 89999998654

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=96.93  E-value=0.00051  Score=72.94  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||++|+.+|..|++.|++|+|||+.+...
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            4589999999999999999999999999999987554

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=96.89  E-value=0.00059  Score=71.55  Aligned_cols=34  Identities=9%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||++|+.+|..|++.|++|+|+|+.+
T Consensus        18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4589999999999999999999999999999985

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=96.85  E-value=0.00064  Score=74.66  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      ..+|+|||||++|+++|..|++.|+ +|+|||+.+.
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            4689999999999999999999998 9999999864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.85  E-value=0.00038  Score=74.65  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--------CeEEEEcCCC-Cc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--------YDAVCISPRN-HM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--------~~Vtvie~~~-~~  144 (441)
                      +++|+|||||++||++|..|.+.|        ++|+|+|+++ ++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            568999999999999999999888        9999999998 77

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.80  E-value=0.00073  Score=72.32  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHhhcc-----CCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT-----KIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~-----~g~~Vtvie~~~~~  144 (441)
                      .+|+||||||+||++|..|++     .|++|+|||+.+..
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            479999999999999999999     99999999997643

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.78  E-value=0.00077  Score=70.80  Aligned_cols=34  Identities=9%  Similarity=0.097  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|||||.+|+++|..|++.|++|+|+|+.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3589999999999999999999999999999975

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.75  E-value=0.00081  Score=70.91  Aligned_cols=34  Identities=21%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||+||+++|..|++.|.+|+|+|+.+.
T Consensus         8 ~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~   41 (588)
T 2wdq_A            8 FDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4899999999999999999999999999999753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.72  E-value=0.00099  Score=69.51  Aligned_cols=55  Identities=20%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCc-hHHHHHHHHHHHHHHHHHHh
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPA-LAQVAERQGKYLAELFNKKI  347 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~-~a~~A~~qg~~aA~nI~~~l  347 (441)
                      |.|.||.+.|| ++|++||+|+|+... ..|...... ....|+-.|+.|++++.+.+
T Consensus       355 GGi~vd~~~~t-~I~GLyAaGE~a~~g-~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~  410 (540)
T 1chu_A          355 GGVMVDDHGRT-DVEGLYAIGEVSYTG-LHGANRMASNSLLECLVYGWSAAEDITRRM  410 (540)
T ss_dssp             CEEECCTTCBC-SSBTEEECGGGEECS-SSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEECCCCCC-ccCCEEecccccccc-ccCCCcCcchhHHHHHHHHHHHHHHHHHhc
Confidence            99999999998 999999999998321 123222222 34467778999999988665

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.70  E-value=0.0016  Score=65.85  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             CcEEEECCCHH----H--HHHH----HhhccCCCe-----EEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhh
Q 013561          110 PRVVVLGTGWG----A--CRFL----KGIDTKIYD-----AVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSL  174 (441)
Q Consensus       110 k~VvIIGgG~a----G--l~aA----~~L~~~g~~-----Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~  174 (441)
                      ++++|||+|+.    |  +++|    ..|++.|.+     ||++++.+.+...        +..........+.+.   +
T Consensus       150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~--------~l~~~~~~~~~~~~~---l  218 (437)
T 3sx6_A          150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHL--------GIQGVGDSKGILTKG---L  218 (437)
T ss_dssp             CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCT--------TTTCCTTHHHHHHHH---H
T ss_pred             CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCcccccc--------ccCcchHHHHHHHHH---H
Confidence            35789998654    3  6666    566667764     9999998865310        000111122222222   2


Q ss_pred             cCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          175 SSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       175 ~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      . ..+++++.+ .+++|+.+  .+.+++...++.  ..+..++++|.+++++|..++
T Consensus       219 ~-~~gI~~~~~~~v~~v~~~--~v~~~~~~~~g~--~~~~~~i~~D~vv~~~g~~~~  270 (437)
T 3sx6_A          219 K-EEGIEAYTNCKVTKVEDN--KMYVTQVDEKGE--TIKEMVLPVKFGMMIPAFKGV  270 (437)
T ss_dssp             H-HTTCEEECSEEEEEEETT--EEEEEEECTTSC--EEEEEEEECSEEEEECCEECC
T ss_pred             H-HCCCEEEcCCEEEEEECC--eEEEEecccCCc--cccceEEEEeEEEEcCCCcCc
Confidence            2 347777654 78888754  455554221110  011347899999999996654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.67  E-value=0.001  Score=70.63  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||.||+++|..|++.|.+|+|+|+..
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            489999999999999999999999999999975

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.61  E-value=0.0012  Score=70.41  Aligned_cols=56  Identities=21%  Similarity=0.227  Sum_probs=40.4

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCc-hHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPA-LAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~-~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      |.|.||.+.|| ++|++||+|+|+... ..|...... ..-.|+-.|+.|++++.+++.
T Consensus       373 GGi~vd~~~~v-~IpGLYAaGE~a~~g-~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~  429 (660)
T 2bs2_A          373 GGIRTDYRGEA-KLKGLFSAGEAACWD-MHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA  429 (660)
T ss_dssp             CEEECCTTSBC-SSBTEEECGGGEECC-SSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCce-ecCCEEecccccccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999 999999999986311 123222222 334577789999999887663

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.52  E-value=0.0027  Score=60.62  Aligned_cols=88  Identities=11%  Similarity=0.015  Sum_probs=54.8

Q ss_pred             CCcEEEECCC-HHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          109 KPRVVVLGTG-WGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       109 ~k~VvIIGgG-~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      .++++||||| .+++++|..+++.+.+||++++.+.+.  .                 .+.+.   +. ..++.++...+
T Consensus       146 ~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--~-----------------~~~~~---l~-~~g~~~~~~~v  202 (304)
T 4fk1_A          146 DQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS--Q-----------------TIMDE---LS-NKNIPVITESI  202 (304)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--H-----------------HHHHH---HH-TTTCCEECSCE
T ss_pred             CCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch--h-----------------hhhhh---hh-ccceeEeeeeE
Confidence            4567777776 567899999999999999998765332  0                 01111   22 23455555556


Q ss_pred             EEEeCCCCE---EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          188 IGIDTDKHE---VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       188 ~~id~~~~~---v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      ..+..+...   +.+.+           ..+++.|.+|++.|..|+
T Consensus       203 ~~~~~~~~~~~~v~~~~-----------g~~i~~~~~vi~~g~~~~  237 (304)
T 4fk1_A          203 RTLQGEGGYLKKVEFHS-----------GLRIERAGGFIVPTFFRP  237 (304)
T ss_dssp             EEEESGGGCCCEEEETT-----------SCEECCCEEEECCEEECS
T ss_pred             EEeecCCCeeeeeeccc-----------cceeeecceeeeeccccC
Confidence            666554332   33222           137889999998886654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=96.45  E-value=0.0018  Score=69.00  Aligned_cols=33  Identities=9%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHhhc---c-CCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGID---T-KIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~---~-~g~~Vtvie~~~  142 (441)
                      .+|+|||||+||+++|..|+   + .|.+|+|+|+.+
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            48999999999999999999   6 899999999986

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.44  E-value=0.0027  Score=54.49  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|+|..|..+|..|.+.|++|+++++++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            5689999999999999999999999999999875

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.38  E-value=0.002  Score=64.27  Aligned_cols=82  Identities=12%  Similarity=0.043  Sum_probs=49.7

Q ss_pred             HHHHHHH----hhccCC----CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EEEEE
Q 013561          120 GACRFLK----GIDTKI----YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SCIGI  190 (441)
Q Consensus       120 aGl~aA~----~L~~~g----~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i  190 (441)
                      +|+++|.    .|.+.|    .+|+++++.+ ..  +        ... ......+.+.   + +..+++++.+ .++++
T Consensus       181 ~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l--~--------~~~-~~~~~~~~~~---l-~~~gV~~~~~~~v~~i  244 (409)
T 3h8l_A          181 PVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YL--S--------DLS-PNSRKAVASI---Y-NQLGIKLVHNFKIKEI  244 (409)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SS--T--------TBC-HHHHHHHHHH---H-HHHTCEEECSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cc--c--------ccC-HHHHHHHHHH---H-HHCCCEEEcCCceEEE
Confidence            5777774    455667    4999999887 22  1        111 1111222222   2 2346777764 68888


Q ss_pred             eCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          191 DTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       191 d~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      +.+  .+.++++           .++++|.||+|+|..|+
T Consensus       245 ~~~--~v~~~~g-----------~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          245 REH--EIVDEKG-----------NTIPADITILLPPYTGN  271 (409)
T ss_dssp             CSS--EEEETTS-----------CEEECSEEEEECCEECC
T ss_pred             CCC--eEEECCC-----------CEEeeeEEEECCCCCcc
Confidence            653  4555432           37899999999998775

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.38  E-value=0.002  Score=67.20  Aligned_cols=35  Identities=9%  Similarity=0.086  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+++|||+|++|+.+|.+|++.|++|+|+|+.+.
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46899999999999999999999999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.36  E-value=0.0038  Score=52.63  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|+|+|.|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            5689999999999999999999999999999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.29  E-value=0.0034  Score=52.75  Aligned_cols=34  Identities=6%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5689999999999999999999999999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.29  E-value=0.0038  Score=53.35  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|+|+|..|...+..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            5689999999999999999999999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.27  E-value=0.002  Score=68.84  Aligned_cols=44  Identities=11%  Similarity=0.076  Sum_probs=35.4

Q ss_pred             CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          297 EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       297 ~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      ..++| ++|++||+|||+...       ....+..+..+|++++.++..++.
T Consensus       446 ~~~~t-~v~gl~a~Ge~~~~~-------~hg~~~~sl~~g~~ag~~a~~~~~  489 (662)
T 3gyx_A          446 YNRMT-TVEGLWTCADGVGAS-------GHKFSSGSHAEGRIVGKQMVRWYL  489 (662)
T ss_dssp             CTTBC-SSBTEECCSSSBCSC-------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCC-ccCCeEeCccccccc-------cCccHhHHHHHHHHHHHHHHHHHh
Confidence            67888 999999999998421       122377888899999999998886

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.04  E-value=0.005  Score=49.45  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      +++|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            568999999999999999999999 9999998864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.99  E-value=0.0059  Score=50.67  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999998864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=95.76  E-value=0.0066  Score=62.63  Aligned_cols=35  Identities=11%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~  143 (441)
                      -.+++|||||+||+.+|.+|++ .+++|.|+|+.+.
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            3589999999999999999997 6899999998754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.60  E-value=0.012  Score=60.58  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~  144 (441)
                      .+|||+|||+|-.|+..+..|++  .+.+|+++-+.+.+
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            47899999999999999999975  36899999987643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.55  E-value=0.0091  Score=49.67  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|+|..|..+|..|.+.|++|+++++++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5689999999999999999999999999998764

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.51  E-value=0.0071  Score=62.90  Aligned_cols=34  Identities=15%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+++|||||.||+.+|.+|++ |.+|.|+|+.+.
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            3589999999999999999999 999999999854

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=95.46  E-value=0.01  Score=61.21  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+++|||+|++|+.+|.+|++.|.+|.|+|+....
T Consensus        11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            468999999999999999999999999999998743

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.42  E-value=0.012  Score=51.70  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~  142 (441)
                      +.+|+|+|.|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            56899999999999999999998 99999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.40  E-value=0.014  Score=53.56  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ++++|+|||||..|...+..|.+.|.+|+||+++
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3789999999999999999999999999999875

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=95.35  E-value=0.011  Score=60.95  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+++|||+|++|+.+|.+|++.|.+|+|+|+.++..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            3589999999999999999999999999999987543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=95.16  E-value=0.015  Score=60.96  Aligned_cols=35  Identities=9%  Similarity=0.079  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~  143 (441)
                      ..++||||||.||+.+|.+|++.+ ++|.|+|+.+.
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            358999999999999999999887 79999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.08  E-value=0.019  Score=54.33  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.++|+|||+|..|...|..|++.|++|+++|+++.
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            357999999999999999999999999999998763

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.95  E-value=0.013  Score=55.48  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||||-.|...+..|.+.|++||||+++.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            6799999999999999999999999999998764

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.85  E-value=0.015  Score=58.73  Aligned_cols=35  Identities=14%  Similarity=0.143  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|||.|.+|+++|+.|.+.|++|+++|.++.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            57899999999999999999999999999998763

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=94.73  E-value=0.023  Score=59.15  Aligned_cols=35  Identities=9%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~~Vtvie~~~~  143 (441)
                      ..+++|||+|++|+.+|.+|++. |.+|.|+|+.+.
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD   48 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence            45899999999999999999997 899999999854

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.66  E-value=0.024  Score=57.58  Aligned_cols=35  Identities=14%  Similarity=0.035  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|.|||.|.+|+++|+.|.+.|++|++.|.++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            36899999999999999999999999999999865

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.66  E-value=0.03  Score=53.45  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.|||+|..|...|..|++.|++|+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.62  E-value=0.024  Score=59.44  Aligned_cols=34  Identities=9%  Similarity=0.117  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~  142 (441)
                      ..++||||||.||+.+|.+|++ .+++|.|+|+.+
T Consensus        19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4689999999999999999996 589999999987

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=94.61  E-value=0.024  Score=59.55  Aligned_cols=36  Identities=8%  Similarity=0.040  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~~  144 (441)
                      ..+++|||+|++|+.+|.+|++ .|.+|.|+|+....
T Consensus        24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            3589999999999999999999 79999999998654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.61  E-value=0.028  Score=53.93  Aligned_cols=37  Identities=11%  Similarity=-0.015  Sum_probs=33.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++++|.|||.|..|...|..|.+.|++|+++++++
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3445799999999999999999999999999998875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.58  E-value=0.028  Score=47.31  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|||+|..|...+..|...|++|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            5699999999999999999999999999998864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.54  E-value=0.036  Score=49.85  Aligned_cols=42  Identities=14%  Similarity=0.053  Sum_probs=35.4

Q ss_pred             CCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          296 DEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       296 d~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      ++.+++ +.++||++||++     .|     ..+..|+..|+.||+.|.+.|+
T Consensus       287 ~~~~~~-~~~~v~l~GDa~-----~g-----~gv~~A~~sG~~aA~~I~~~L~  328 (336)
T 3kkj_A          287 WGALSD-ADLGIYVCGDWC-----LS-----GRVEGAWLSGQEAARRLLEHLQ  328 (336)
T ss_dssp             CSSEEE-TTTTEEECCGGG-----TT-----SSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceee-CCCCEEEEeccc-----CC-----cCHHHHHHHHHHHHHHHHHHhh
Confidence            456677 789999999997     23     3588999999999999999996

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=94.29  E-value=0.02  Score=59.92  Aligned_cols=35  Identities=11%  Similarity=0.048  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~~  144 (441)
                      .+++|||||.||+.+|.+|++ .+++|.|+|+.+..
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            479999999999999999998 78999999997643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.24  E-value=0.035  Score=50.51  Aligned_cols=37  Identities=24%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++++|+|.|| |..|..++..|.+.|++|+++.+++
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            345789999998 9999999999999999999998864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.20  E-value=0.039  Score=54.95  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|||+|.+|+.+|+.+...|.+|+++|+++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5799999999999999999999999999999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.15  E-value=0.041  Score=51.65  Aligned_cols=35  Identities=6%  Similarity=0.137  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|.|+|+.|..++..|.+.|++|+++.++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            56899999999999999999999999999998753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.14  E-value=0.038  Score=53.74  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.||+|||+|..|...|..|.+.|++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4589999999999999999999999999998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.12  E-value=0.033  Score=50.41  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            79999999999999999999999999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.09  E-value=0.04  Score=53.12  Aligned_cols=33  Identities=15%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +||+|||+|..|...|..|++.|++|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999999999999998864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.01  E-value=0.045  Score=53.18  Aligned_cols=35  Identities=14%  Similarity=0.100  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      +.||+|||+|..|..+|..|+..|+ +|+++|.++.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4589999999999999999999888 9999998763

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.97  E-value=0.043  Score=55.43  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+.+|.|||.||.|+..|..|++.|++|+.||-++.
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            3467999999999999999999999999999998763

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.84  E-value=0.046  Score=51.93  Aligned_cols=33  Identities=15%  Similarity=0.110  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|.|||+|..|...|..|.+.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            489999999999999999999999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.82  E-value=0.038  Score=54.62  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|||+|.+|+.+|+.+...|.+|+++|+++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6799999999999999999999999999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.72  E-value=0.051  Score=52.57  Aligned_cols=34  Identities=6%  Similarity=0.047  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHH-HHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACR-FLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~-aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||.|.+|++ +|..|.++|++|++.|.++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            679999999999997 7889999999999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.72  E-value=0.051  Score=52.12  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      +.||+|||+|..|..+|..|...|+  +|+++++++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4589999999999999999999998  999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=93.70  E-value=0.051  Score=54.56  Aligned_cols=45  Identities=13%  Similarity=0.135  Sum_probs=31.4

Q ss_pred             CCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          177 DPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       177 ~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      ..+++++.+ .|++++.  +.+.+++.+       ++.+++++|.+++++|.+|+
T Consensus       212 ~~GV~~~~~~~v~~v~~--~~~~~~~~~-------g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          212 ERNIDWIANVAVKAIEP--DKVIYEDLN-------GNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             HTTCEEECSCEEEEECS--SEEEEECTT-------SCEEEEECSEEEEECEEECC
T ss_pred             hCCeEEEeCceEEEEeC--CceEEEeeC-------CCceEeecceEEEeccCCCc
Confidence            357777665 7888865  456665532       23358999999999998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.69  E-value=0.049  Score=51.87  Aligned_cols=34  Identities=9%  Similarity=-0.016  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.|||.|..|...|..|.+.|++|+++++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999998876

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.69  E-value=0.05  Score=52.78  Aligned_cols=33  Identities=9%  Similarity=0.031  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      .+||+|||+|..|...|..|++.|++|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            458999999999999999999999999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.69  E-value=0.054  Score=50.66  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|+|+.|..++..|.+.|++|+++.+++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            4689999999999999999999999999998875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.69  E-value=0.06  Score=48.51  Aligned_cols=35  Identities=6%  Similarity=0.106  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|.|||+|..|...|..|.+.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            56899999999999999999999999999998764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.67  E-value=0.041  Score=53.16  Aligned_cols=35  Identities=9%  Similarity=0.086  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|..|...|..++..|++|+++|.++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999998764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.66  E-value=0.056  Score=52.82  Aligned_cols=35  Identities=6%  Similarity=-0.025  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|+|+|||||.-|..++..+.+.|++|+++|+++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            57999999999999999999999999999998764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.66  E-value=0.052  Score=55.10  Aligned_cols=33  Identities=15%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .||.|||.|+.|+..|..|++.|++|+++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            489999999999999999999999999999876

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.65  E-value=0.059  Score=52.88  Aligned_cols=34  Identities=18%  Similarity=0.079  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.||.|||+|.-|...|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.39  E-value=0.061  Score=53.69  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||+|.+|+.++..+...|.+|+++|+++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            6799999999999999999999999999998875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.28  E-value=0.048  Score=52.34  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +||+|||+|-.|...|..|.+.|++|+++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            589999999999999999999999999998864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.28  E-value=0.072  Score=52.82  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|+|.+|+.++..+...|.+|+++|+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36799999999999999999999999999999875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.28  E-value=0.079  Score=46.60  Aligned_cols=33  Identities=12%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             CcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|.|| |..|..++..|.+.|++|+++.+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            68999998 9999999999999999999998865

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.19  E-value=0.071  Score=47.97  Aligned_cols=34  Identities=12%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |+.|..++..|.+.|++|+++.+++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            468999995 9999999999999999999998875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.18  E-value=0.071  Score=52.36  Aligned_cols=37  Identities=8%  Similarity=0.060  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++++|.|||.|..|...|..|.+.|++|+++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4446799999999999999999999999999998875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.12  E-value=0.07  Score=51.36  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      ++||+|||+|..|...|..|+..|+ +|+++|.++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4689999999999999999999898 999999876

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.11  E-value=0.065  Score=54.54  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .||+|+|+|-.|...|+.|...|++|+|||+++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            489999999999999999999999999999875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.09  E-value=0.079  Score=49.69  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.|||+|..|...|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            79999999999999999999999999998875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.06  E-value=0.063  Score=52.62  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|.|||+|..|...|..|.+.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999998865

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.05  E-value=0.082  Score=48.82  Aligned_cols=35  Identities=14%  Similarity=0.084  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++|.|||.|..|...|..|.+.|++|+++++++
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46799999999999999999999999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.00  E-value=0.078  Score=54.19  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..||.|||.|+.|+..|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4589999999999999999999999999999875

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.96  E-value=0.071  Score=54.45  Aligned_cols=35  Identities=11%  Similarity=0.157  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC-CC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK-IY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~-g~-~Vtvie~~~~  143 (441)
                      .+||.|||.|+.|+..|..|++. |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            45899999999999999999999 99 9999999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.95  E-value=0.078  Score=47.92  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||+|..|...|..|.+.|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.95  E-value=0.083  Score=50.39  Aligned_cols=34  Identities=9%  Similarity=-0.108  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||.|..|...|..|.+.|++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999998765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.90  E-value=0.078  Score=53.69  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .-|++|||.|+.|+..|..|++.|++|+++++++.-
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            458999999999999999999999999999998743

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.87  E-value=0.13  Score=52.08  Aligned_cols=37  Identities=8%  Similarity=0.034  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +..++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus        52 ~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           52 YDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            3457999999999999999999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.78  E-value=0.094  Score=52.79  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|.|||.|+.|+..|..|++ |++|+++|+++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            4589999999999999999998 999999998763

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.76  E-value=0.097  Score=50.65  Aligned_cols=36  Identities=14%  Similarity=0.166  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +++.||+|||+|..|.++|..|+..|+ +|+++|.++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            346799999999999999999998888 999999876

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.73  E-value=0.079  Score=53.83  Aligned_cols=34  Identities=12%  Similarity=-0.092  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||+|..|...+..|.+.|.+|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            6799999999999999999999999999999863

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.69  E-value=0.081  Score=50.94  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=30.4

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++++|+|.|| |+.|..++..|.+.|++|+++++.+
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            344679999998 9999999999999999999998875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.68  E-value=0.1  Score=50.26  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPR  141 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~  141 (441)
                      ++.+||+|||+|..|..+|..|+..|+ +|+++|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            345799999999999999999999999 99999987

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.64  E-value=0.12  Score=52.57  Aligned_cols=36  Identities=17%  Similarity=0.052  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +..++|.|||+|..|...|..|++.|++|+++|+++
T Consensus        35 ~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           35 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            345689999999999999999999999999999876

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.62  E-value=0.072  Score=51.16  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~  141 (441)
                      +++|.|||.|..|...|..|.+.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            5689999999999999999999999 99999886

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.62  E-value=0.1  Score=50.50  Aligned_cols=35  Identities=11%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      ++||+|||+|..|...|..|+..|+ +|+++|.++.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            4589999999999999999999998 9999998763

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.61  E-value=0.095  Score=50.72  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++.||.|||+|..|...|..|.+.|++|+++++++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            46699999999999999999999999999998864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.60  E-value=0.1  Score=51.31  Aligned_cols=34  Identities=18%  Similarity=-0.007  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|+|.+|..++..+...|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4799999999999999999999999999998864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.58  E-value=0.1  Score=51.44  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|+|+|.+|..+|+.+...|++|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5799999999999999999999999999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.51  E-value=0.097  Score=49.42  Aligned_cols=33  Identities=9%  Similarity=0.043  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|.|||.|..|...|..|.+.|++|+++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            489999999999999999999999999998875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.51  E-value=0.11  Score=49.66  Aligned_cols=34  Identities=9%  Similarity=0.058  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.|||+|..|...|..|.+.|++|+++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999998764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.51  E-value=0.11  Score=50.07  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      ++||+|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4589999999999999999999888 999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.48  E-value=0.053  Score=49.26  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEE-EcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVC-ISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtv-ie~~~  142 (441)
                      +.||.|||+|..|...|..|.+.|++|++ +++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            56899999999999999999999999999 77654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=92.45  E-value=0.11  Score=54.95  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||+|..|..+|..|++.|.+|.+||++++.+
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   44 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCccc
Confidence            5799999999999999999999999999999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.34  E-value=0.18  Score=51.48  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=15.5

Q ss_pred             eeeCCEEEEcCCCCcCC
Q 013561          215 KVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       215 ~i~yD~LvlAtGs~p~~  231 (441)
                      ++++|.||+|+|.+|+.
T Consensus       299 ~i~aD~Vv~a~G~~p~~  315 (493)
T 1y56_A          299 EYKVDALIFADGRRPDI  315 (493)
T ss_dssp             EEECSEEEECCCEEECC
T ss_pred             EEEeCEEEECCCcCcCc
Confidence            78999999999998875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.28  E-value=0.15  Score=48.77  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=32.9

Q ss_pred             CCCCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          105 KPGEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       105 ~~~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +..++++|+|.|| |+.|..++..|.+.|++|+++++..
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3344678999998 9999999999999999999998854

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.26  E-value=0.12  Score=51.18  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||+|.+|..+|+.+...|.+|+++++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46899999999999999999999999999998764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.25  E-value=0.097  Score=50.39  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.|||.|..|...|..|.+.|++|+++++++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            5689999999999999999999999999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.17  E-value=0.07  Score=50.70  Aligned_cols=33  Identities=12%  Similarity=0.172  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .||+|||+|-.|...|..|.+.|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            589999999999999999999999999999874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=92.15  E-value=0.11  Score=47.37  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             CCCCcEEEEC-CCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          107 GEKPRVVVLG-TGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIG-gG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      +++++|+|.| +|..|..++..|.+.| ++|+++.+++
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~   58 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP   58 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence            4467899999 5999999999999999 8999998875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.12  E-value=0.13  Score=49.19  Aligned_cols=33  Identities=12%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.||+|||+|-.|...|..|. .|++|+++++++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            358999999999999999999 999999998865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.10  E-value=0.069  Score=50.45  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|.|||.|..|...|..|.+.|++|+++++++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999998875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=91.99  E-value=0.15  Score=48.67  Aligned_cols=34  Identities=12%  Similarity=-0.033  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.|||.|..|...|..|.+.|++|+++++++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5689999999999999999999999999998865

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=91.96  E-value=0.088  Score=48.01  Aligned_cols=33  Identities=18%  Similarity=0.129  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|+|+|..|...|..|.+.|+ |+++|+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            5689999999999999999999999 99998765

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.95  E-value=0.12  Score=49.77  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      .++|.|||.|..|...|..|.+.| ++|+++++++
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            468999999999999999999999 9999998875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.95  E-value=0.17  Score=45.38  Aligned_cols=34  Identities=12%  Similarity=0.015  Sum_probs=30.4

Q ss_pred             CCcEEEECC-CHHHHHHHHhhc-cCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGID-TKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~-~~g~~Vtvie~~~  142 (441)
                      +|+|+|.|| |..|..++..|. +.|++|+++.+++
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            466999995 999999999999 8999999998874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.93  E-value=0.14  Score=48.07  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++++|+|+|-+|..+|..|.+.|.+|++++++.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            6799999999999999999999999999998763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.92  E-value=0.14  Score=51.13  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|.|||.|+.|+..|..|++ |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            79999999999999999999 99999999875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=91.88  E-value=0.093  Score=53.41  Aligned_cols=34  Identities=9%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      .++|.|||.|+.|+..|..|++.  |++|+++++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            35899999999999999999988  89999999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=91.82  E-value=0.19  Score=47.81  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             CCcEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|.||| .|..|.+.|..|.+.|++|+++++++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            46899999 99999999999999999999998875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.79  E-value=0.13  Score=49.40  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++||+|||+|..|...|..|++.|++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            568999999999999999999999999999 553

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.77  E-value=0.11  Score=48.18  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|||+|-.|..+|..|++.|. +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4689999999999999999999997 899999874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=91.75  E-value=0.1  Score=52.59  Aligned_cols=32  Identities=9%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|.|||.|+.|+..|..|++.|++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.73  E-value=0.15  Score=48.58  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .|+|.|||+|..|-..|..|+ .|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            679999999999999999999 999999999876

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.64  E-value=0.11  Score=53.02  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      +.+|.|||.|+.|+..|..|++.  |++|+++++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            45899999999999999999987  79999999865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=91.59  E-value=0.15  Score=48.52  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|.|||.|.+|..+|+.|...|++|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36799999999999999999999999999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=91.55  E-value=0.16  Score=48.25  Aligned_cols=35  Identities=14%  Similarity=0.061  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|.|||.|.+|..+|+.|...|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36899999999999999999999999999998764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.50  E-value=0.15  Score=47.92  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|.|| |+.|-.++..|.+.||+|+++.|++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            7999998 9999999999999999999998865

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=91.48  E-value=0.14  Score=49.41  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=31.0

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |.+++|+|.|| |+.|...+..|.+.|++|+++.+++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            33578999998 9999999999999999999999875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.45  E-value=0.17  Score=47.48  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++|||+|-+|..++..|.+.|.+|+|++|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6799999999999999999999999999998864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=91.41  E-value=0.16  Score=48.06  Aligned_cols=35  Identities=11%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|.|| |+.|..++..|.+.|++|+++++.+.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            679999998 99999999999999999999988764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.41  E-value=0.16  Score=48.88  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      +.||+|||+|..|..+|..|...++  +|+++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999998887  999999765

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=91.40  E-value=0.13  Score=48.75  Aligned_cols=34  Identities=6%  Similarity=-0.040  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|.|||.|..|...|..|.+.|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4589999999999999999999999999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=91.39  E-value=0.17  Score=48.56  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +||+|||+|..|...|..|+..|+ +|+++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            589999999999999999998886 999999765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=91.35  E-value=0.21  Score=47.64  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=32.0

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++|+|.|| |+.|..++..|.+.|++|+++.++.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34679999998 9999999999999999999998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.35  E-value=0.2  Score=49.45  Aligned_cols=36  Identities=11%  Similarity=0.166  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+++|+|||+|..|..+++.+.+.|++|+++++.+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            467999999999999999999999999999988653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=91.32  E-value=0.18  Score=44.86  Aligned_cols=32  Identities=16%  Similarity=0.349  Sum_probs=29.7

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|.|| |..|..++..|.+.|++|+++.+++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 9999999999999999999998875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=91.25  E-value=0.16  Score=48.96  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCC----CeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKI----YDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g----~~Vtvie~~~  142 (441)
                      ++..+|.|||+|..|...|..|.+.|    ++|+++++++
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            34458999999999999999999998    8999998875

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=91.25  E-value=0.18  Score=48.21  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=31.8

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|.|| |+.|..++..|.+.|++|++++++..
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            568999998 99999999999999999999988753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.25  E-value=0.16  Score=48.50  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ||+|||+|..|...|..|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  999999875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.21  E-value=0.092  Score=51.04  Aligned_cols=35  Identities=11%  Similarity=0.089  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-------CeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-------YDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-------~~Vtvie~~~~  143 (441)
                      ++||+|||+|..|...|..|++.|       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            458999999999999999999888       99999998764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.20  E-value=0.16  Score=50.88  Aligned_cols=35  Identities=14%  Similarity=0.008  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|+|.|..|..+|..|.+.|++|++||.++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            45899999999999999999999999999998863

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.16  E-value=0.22  Score=46.88  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||+ |..|...|..|.+.|++|+++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            358999999 9999999999999999999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=91.15  E-value=0.19  Score=44.77  Aligned_cols=32  Identities=31%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             cEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+||| +|..|...|..|.+.|++|+++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            799999 99999999999999999999998864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.15  E-value=0.2  Score=47.75  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|||+|.+|..+|..|.+.|+ +|+|+++..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            6799999999999999999999997 999998764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.10  E-value=0.21  Score=48.28  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .+||+|||+|..|.++|..|...++ +|+++|.++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            5689999999999999999988777 999999876

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.04  E-value=0.18  Score=51.26  Aligned_cols=35  Identities=11%  Similarity=-0.050  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|+|.+|..+|..|+..|.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999999999999999999999998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=90.99  E-value=0.29  Score=52.66  Aligned_cols=36  Identities=11%  Similarity=0.191  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            457899999999999999999999999999998763

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.97  E-value=0.23  Score=47.75  Aligned_cols=34  Identities=15%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      .++|.|||.|..|.+.|..|.+.|+  +|+++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4689999999999999999999999  999998875

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=90.86  E-value=0.21  Score=53.09  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccC------CCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK------IYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~------g~~Vtvie~~~  142 (441)
                      .+|+|||||.||+++|..|++.      |.+|+|+|+..
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~   61 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS   61 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence            5899999999999999999987      99999999964

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=90.84  E-value=0.17  Score=50.69  Aligned_cols=35  Identities=14%  Similarity=-0.064  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|+|.|.+|..+|..|...|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            47899999999999999999999999999998765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.78  E-value=0.19  Score=48.70  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      +.||+|||+|..|.++|..|...|+  +|+++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            5689999999999999999988776  899998864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=90.67  E-value=0.29  Score=52.03  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||.||+++|..|++.|.+|+|+|+.+.
T Consensus         6 ~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~   39 (660)
T 2bs2_A            6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (660)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             ccEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4799999999999999999999999999999753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.66  E-value=0.25  Score=49.48  Aligned_cols=37  Identities=14%  Similarity=0.103  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.+++|+|||+|..|..++..+.+.|++|.++++.+.
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            3468999999999999999999999999999987653

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=90.63  E-value=0.28  Score=50.82  Aligned_cols=35  Identities=11%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||+||+++|..|++ |.+|+|+|+.+..
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            3589999999999999999999 9999999998643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.63  E-value=0.22  Score=47.70  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~  143 (441)
                      ||+|||+|..|...|..|+..  |++|+++|.++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            799999999999999999874  799999998763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=90.63  E-value=0.19  Score=51.42  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+.+++|.|||.|..|...|..|.+.|++|+++++++
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3457799999999999999999999999999998864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.62  E-value=0.16  Score=47.72  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++|+|+|-+|..+|..|.+.|.+|+|++++.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6799999999999999999999999999998864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=90.61  E-value=0.2  Score=49.54  Aligned_cols=33  Identities=12%  Similarity=0.085  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~  141 (441)
                      ..||||+|+|.||+.+|+.|...|. +|+++|++
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            5699999999999999999998898 99999987

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.59  E-value=0.22  Score=46.57  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ++|.|||+|..|...|..|.+.|+  +|+++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            479999999999999999999998  899998764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=90.58  E-value=0.17  Score=47.48  Aligned_cols=32  Identities=9%  Similarity=0.127  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|.|||+|..|...|..|.+ |++|+++++++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            379999999999999999999 99999998765

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=90.58  E-value=0.21  Score=47.20  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |+.|..++..|.+.|++|++++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            468999998 9999999999999999999998654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=90.53  E-value=0.13  Score=48.92  Aligned_cols=31  Identities=13%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccC-----C-CeEEEEcC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK-----I-YDAVCISP  140 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~-----g-~~Vtvie~  140 (441)
                      .||.|||+|..|...|..|.+.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4899999999999999999988     9 99999987

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=90.44  E-value=0.21  Score=51.00  Aligned_cols=35  Identities=11%  Similarity=0.057  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            56899999999999999999999999999998763

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.36  E-value=0.25  Score=50.55  Aligned_cols=35  Identities=9%  Similarity=-0.021  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||.|..|..+|+.+...|++|+++|+++
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            37899999999999999999999999999998764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.34  E-value=0.24  Score=44.22  Aligned_cols=32  Identities=13%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|.|| |..|..++..|.+.|++|+++.+++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            6999998 9999999999999999999998864

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=90.31  E-value=0.31  Score=47.81  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++++|+|+|+|..|...+..+.+.|++|++++..+.
T Consensus        10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A           10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            467999999999999999999999999999987653

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=90.29  E-value=0.26  Score=48.76  Aligned_cols=37  Identities=19%  Similarity=0.137  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +.+++|+|+|+.+..+|..++..|++|||+|.++.+.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            4599999999999999999999999999999987643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=90.23  E-value=0.19  Score=46.38  Aligned_cols=35  Identities=14%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC----CeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI----YDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g----~~Vtvie~~~~  143 (441)
                      +.+|.|||+|-.|...|..|.+.|    ++|+++++++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            348999999999999999999888    79999988763

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.20  E-value=0.29  Score=46.80  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=31.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++++|+|.|| |+.|..++..|.+.|++|+++++...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            3578999995 99999999999999999999988653

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.20  E-value=0.29  Score=45.22  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|.|||.|..|...|..|.+.|++|+++++++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            3589999999999999999999999999998764

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=90.17  E-value=0.42  Score=46.95  Aligned_cols=85  Identities=5%  Similarity=-0.051  Sum_probs=45.0

Q ss_pred             HHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE--EEEeCCCCE
Q 013561          122 CRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC--IGIDTDKHE  196 (441)
Q Consensus       122 l~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v--~~id~~~~~  196 (441)
                      +.+|..|++  .+.+|++++..+.+.-.+.+..             .+.+......+..+++++.+ .+  ...+.+...
T Consensus       170 ~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~  236 (401)
T 3vrd_B          170 SQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTK-------------GWERLYGFGTENALIEWHPGPDAAVVKTDTEAMT  236 (401)
T ss_dssp             HHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHH-------------HHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTE
T ss_pred             HHHHHHHHhcCCCCEEEEEcccccccccccccH-------------HHHHHHHHHHHhcCcEEEeCceEEEEEecccceE
Confidence            344555544  3478999998876531111110             11111111223456666543 22  333444455


Q ss_pred             EEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcC
Q 013561          197 VYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPL  230 (441)
Q Consensus       197 v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~  230 (441)
                      +.+.++           ++++||.|++++|.+|+
T Consensus       237 v~~~~g-----------~~i~~D~vi~~~g~~~~  259 (401)
T 3vrd_B          237 VETSFG-----------ETFKAAVINLIPPQRAG  259 (401)
T ss_dssp             EEETTS-----------CEEECSEEEECCCEEEC
T ss_pred             EEcCCC-----------cEEEeeEEEEecCcCCc
Confidence            554432           37899999999997764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=90.13  E-value=0.25  Score=44.93  Aligned_cols=33  Identities=6%  Similarity=0.005  Sum_probs=30.3

Q ss_pred             CcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|.|| |..|.+++..|.+.|++|++++++.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~   35 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQ   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            57999997 9999999999999999999998875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.13  E-value=0.3  Score=48.06  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+++|.|||+|..|..+++.+.+.|++|+++++.+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            367999999999999999999999999999998754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.12  E-value=0.23  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~  141 (441)
                      ..||+|+|+|-+|..+|+.|...|. +|+++|++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5699999999999999999998888 89999987

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.08  E-value=0.25  Score=46.52  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC---eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY---DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~---~Vtvie~~~  142 (441)
                      +++|.|||+|-.|...|..|.+.|+   +|+++++++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4689999999999999999999998   999998875

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=90.03  E-value=0.27  Score=46.93  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|.|| |+.|..++..|.+.|++|+++++++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            48999996 99999999999999999999998753

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=90.03  E-value=0.34  Score=45.03  Aligned_cols=36  Identities=8%  Similarity=-0.184  Sum_probs=31.3

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++|+|.|| |..|.++|..|.+.|++|++++++.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            44678999986 7999999999999999999998764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.01  E-value=0.19  Score=48.28  Aligned_cols=30  Identities=13%  Similarity=0.042  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISP  140 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~  140 (441)
                      ||.|||+|..|...|..|.+.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            799999999999999999999999999988

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=89.98  E-value=0.22  Score=48.36  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccC-CCeEEEEcCCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTK-IYDAVCISPRNH  143 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~-g~~Vtvie~~~~  143 (441)
                      +++++|+|.|| |+.|..++..|.+. |++|+++++...
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   60 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD   60 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChh
Confidence            44679999995 99999999999987 999999998763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=89.92  E-value=0.22  Score=50.42  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|+|+|+|.+|...|..|.+.|++|++++++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCH
Confidence            35789999999999999999999999999998763

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=89.87  E-value=0.21  Score=49.51  Aligned_cols=31  Identities=19%  Similarity=0.160  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHhhcc-CCCeEEEEcC
Q 013561          110 PRVVVLGTGWGACRFLKGIDT-KIYDAVCISP  140 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~  140 (441)
                      .||+|||+|..|...|..|++ .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            489999999999999999988 5999999983

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=89.85  E-value=0.27  Score=47.19  Aligned_cols=35  Identities=9%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|+|.|| |+.|..++..|.+.|++|+++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4678999998 9999999999999999999998754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=89.82  E-value=0.32  Score=47.14  Aligned_cols=36  Identities=14%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ...+||+|||+|..|...|..|...|.  +++++|.+.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            346799999999999999999988776  899998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.81  E-value=0.21  Score=47.16  Aligned_cols=33  Identities=18%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|.|||+|..|...|..|.+.|++|+++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            489999999999999999999999999998764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.77  E-value=0.3  Score=45.19  Aligned_cols=36  Identities=14%  Similarity=-0.077  Sum_probs=31.6

Q ss_pred             CCCCcEEEECC-CH-HHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GW-GACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~-aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++++|.|| |. .|.++|+.|.+.|++|++++++.
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            34678999999 74 99999999999999999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.74  E-value=0.22  Score=47.56  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      +||+|||+|..|..+|..|...|  ++|+++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            48999999999999999999888  7999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.74  E-value=0.31  Score=47.25  Aligned_cols=36  Identities=11%  Similarity=-0.032  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+++|.|||.|..|...|..|...|++|+++++..
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            346799999999999999999999999999998765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=89.74  E-value=0.24  Score=49.70  Aligned_cols=35  Identities=11%  Similarity=-0.103  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||.|.+|..+|..|...|.+|+++|+++
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            37899999999999999999999999999999865

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=89.70  E-value=0.26  Score=45.85  Aligned_cols=31  Identities=19%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +|+|.|| |+.|..++..|.+.|++|+++.+.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK   38 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence            8999996 999999999999999999999884

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=89.68  E-value=0.21  Score=50.27  Aligned_cols=35  Identities=11%  Similarity=0.119  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.++-|||.|+.|+.+|..|++.|++|+++|.++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            56899999999999999999999999999999863

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.62  E-value=0.2  Score=47.24  Aligned_cols=34  Identities=9%  Similarity=0.132  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +++++|||+|-+|..+|..|.+.|. +|+|++|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            6799999999999999999999998 899998875

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=89.60  E-value=0.24  Score=49.75  Aligned_cols=35  Identities=11%  Similarity=-0.110  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|||.|.+|..+|+.|...|.+|+++|+++
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999999999999999999999998764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=89.60  E-value=0.25  Score=46.43  Aligned_cols=34  Identities=12%  Similarity=0.181  Sum_probs=31.1

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |..|..++..|.+.|++|+++.++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            568999997 9999999999999999999998875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.56  E-value=0.29  Score=45.70  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|.|||+|..|...|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=89.55  E-value=0.38  Score=47.04  Aligned_cols=35  Identities=11%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|+|.|| |+.|..++..|.+.|++|+++++..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   63 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   63 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCC
Confidence            3578999998 9999999999999999999998875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=89.54  E-value=0.19  Score=47.95  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+||.+||-|.-|...|..|.+.||+|+++++++
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999876

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=89.54  E-value=0.3  Score=44.83  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC----eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY----DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~----~Vtvie~~~  142 (441)
                      ++||.|||.|..|...|..|.+.|+    +|+++++++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            3589999999999999999999998    999998865

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=89.53  E-value=0.3  Score=47.91  Aligned_cols=34  Identities=26%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      .+++|+|+|.|..|..+|+.|.+.|++|++.|++
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3689999999999999999999999999988754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=89.47  E-value=0.4  Score=46.38  Aligned_cols=34  Identities=9%  Similarity=-0.005  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      .+||+|||+|..|..+|..|+..|+  +|+++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            5799999999999999999988776  999998864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=89.45  E-value=0.34  Score=45.67  Aligned_cols=34  Identities=21%  Similarity=0.075  Sum_probs=31.1

Q ss_pred             CCcEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++++|+| +|.+|.++|..|.+.|++|++++++.
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            67899999 89999999999999999999998763

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.44  E-value=0.31  Score=46.80  Aligned_cols=35  Identities=9%  Similarity=0.091  Sum_probs=31.8

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|.|| |+.|..++..|.+.|++|+++.+...
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            679999996 99999999999999999999998653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=89.39  E-value=0.19  Score=49.46  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC-------CeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI-------YDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g-------~~Vtvie~~~~  143 (441)
                      +||.|||+|..|...|..|++.|       ++|+++++++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999888       99999998764

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.37  E-value=0.35  Score=45.62  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++++|+|+|-+|.++|..|.+.| +|++++++.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            678999999999999999999999 999998763

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=89.37  E-value=0.26  Score=48.96  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=32.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++++|+|+|||..|..++..+.+.|++|.+++ .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            3457899999999999999999999999999999 54

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=89.31  E-value=0.32  Score=46.80  Aligned_cols=34  Identities=9%  Similarity=0.104  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +++++|+|+|-+|.++|..|++.|. +|+|+.|.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            6799999999999999999999998 899998874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=89.30  E-value=0.33  Score=46.95  Aligned_cols=36  Identities=11%  Similarity=0.058  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+++|.|||.|..|...|..|...|++|++++++.
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            446799999999999999999999999999998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.30  E-value=0.28  Score=47.13  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ++.||+|||+|..|..+|..|...+  .+|+++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3569999999999999999998766  4899998753

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=89.29  E-value=0.31  Score=47.41  Aligned_cols=34  Identities=9%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ++||+|||+ |..|.++|..+...|  .+|+++|.+.
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            568999997 999999999888777  4899998754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=89.26  E-value=0.26  Score=47.16  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ++||+|||+|..|...|..|...|+  +|+|+|.++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            4689999999999999999988888  999999876

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=89.25  E-value=0.32  Score=47.43  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |+.|..++..|.+.|++|+++.++.
T Consensus        28 ~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~   62 (381)
T 1n7h_A           28 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   62 (381)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCC
Confidence            378999998 9999999999999999999998875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=89.24  E-value=0.29  Score=50.02  Aligned_cols=34  Identities=3%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||.|..|...|..|.+.|++|+++++++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.23  E-value=0.41  Score=45.26  Aligned_cols=36  Identities=14%  Similarity=0.030  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCC---HHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTG---WGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG---~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+++|.||+   ..|.++|+.|++.|++|++++++.
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            446889999985   899999999999999999998764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=89.18  E-value=0.31  Score=44.49  Aligned_cols=37  Identities=3%  Similarity=-0.085  Sum_probs=31.7

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ...+++|+|.|| |..|.++|..|++.|++|++++++.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            345788999996 6899999999999999999998754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=89.17  E-value=0.34  Score=45.79  Aligned_cols=34  Identities=15%  Similarity=-0.009  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++++|+|+|-+|.+++..|.+.|. +|+|++|+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            6799999999999999999999998 699998764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=89.14  E-value=0.48  Score=45.88  Aligned_cols=36  Identities=14%  Similarity=-0.067  Sum_probs=32.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+++|.|||.|-.|...|..|...|++|+++++..
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            447899999999999999999999999999998765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=89.03  E-value=0.31  Score=44.99  Aligned_cols=38  Identities=11%  Similarity=-0.049  Sum_probs=32.4

Q ss_pred             CCCCCCcEEEECC---CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          105 KPGEKPRVVVLGT---GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       105 ~~~~~k~VvIIGg---G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ...++|+|+|.||   |..|.++|+.|++.|++|+++.++.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            3445789999996   5899999999999999999998764

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=88.99  E-value=0.34  Score=47.50  Aligned_cols=33  Identities=9%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|||+|..|...+..+.+.|++|++++..+
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~   34 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTP   34 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            689999999999999999999999999998864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=88.99  E-value=0.3  Score=47.16  Aligned_cols=34  Identities=9%  Similarity=0.129  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ++||+|||+|..|.++|..|...|+  +++++|.+.
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            5699999999999999999988776  899998854

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=88.96  E-value=0.26  Score=46.45  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|.|||.|..|...|..|.+.|++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999998765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=88.94  E-value=0.34  Score=45.14  Aligned_cols=38  Identities=11%  Similarity=-0.033  Sum_probs=32.5

Q ss_pred             CCCCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          105 KPGEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       105 ~~~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ....+|+|+|.|| |..|.++|+.|++.|++|++++++.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   48 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDE   48 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3445788999997 6899999999999999999998765

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=88.91  E-value=0.42  Score=43.27  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++++|+|.|| |..|.++|+.|.+.|++|++++++.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3678999997 8999999999999999999998764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=88.86  E-value=0.38  Score=42.86  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             cEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|.| +|+.|..++..|.+.|++|+++.+++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV   34 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            799999 69999999999999999999998875

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=88.81  E-value=0.36  Score=46.25  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|.|| |+.|..++..|.+.|++|+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            468999996 9999999999999999999998754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=88.80  E-value=0.41  Score=45.22  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++++|+|+|-+|..++..|.+.|. +|+|++|..
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            6799999999999999999999996 999998864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=88.79  E-value=0.3  Score=46.28  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=31.5

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +++|+|.|| |..|..++..|.+.|++|+++.+++.
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            468999996 99999999999999999999988763

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=88.78  E-value=0.37  Score=45.36  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             CcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|.|| |+.|..++..|.+.|++|+++++.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   34 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLS   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            37999998 9999999999999999999998765

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=88.73  E-value=0.19  Score=47.25  Aligned_cols=32  Identities=6%  Similarity=-0.013  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|.|||.|..|...|..|.+.|++|++++ ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            589999999999999999999999999997 54

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=88.71  E-value=0.25  Score=46.45  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||+|-+|..+|..|.+.|++|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5689999999999999999999899999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	2e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	4e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	4e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	4e-05
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	8e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	4e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	4e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	4e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	4e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	7e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.001
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.002
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.002
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	0.002
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.003
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.004

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKKI 347
           ++ V+E+L+  SV +V+A+GD  G          P     A + G Y A  +  +KI
Sbjct: 212 EVLVNEYLQT-SVPNVYAVGDLIGG---------PMEMFKARKSGCYAARNVMGEKI 258

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            I VD+  R  SV ++FA+GD             PALA  A  +GK  AE +    
Sbjct: 172 LIEVDQQCRT-SVPNIFAIGDIVPG---------PALAHKASYEGKVAAEAIAGHP 217

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            I VD+ +R  +V  ++A+GD  G          P LA  A  +G   AE     K
Sbjct: 180 FIEVDKQMRT-NVPHIYAIGDIVGQ---------PMLAHKAVHEGHVAAENCAGHK 225

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            I VDE+    +V+ ++A+GD  G            L  VA   G+ LA  LF  K
Sbjct: 170 HIIVDEFQNT-NVKGIYAVGDVCGK---------ALLTPVAIAAGRKLAHRLFEYK 215

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 31/234 (13%), Positives = 53/234 (22%), Gaps = 62/234 (26%)

Query: 110 PRVVVLGTGWGACRFLKGIDTKIYDA--VCISPRNHMVFTPLLASTCVGTLEFRSVAEPV 167
            +VVV+G G G     K I           I P        L      G  +        
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKL------- 55

Query: 168 SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA 227
                    +   + Y           H+       + KL       +  YD+ V+A G 
Sbjct: 56  ---------ESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGI 106

Query: 228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFL 287
           E +   I+        +  + +                                      
Sbjct: 107 ELIYDKIEQRAGKIAQIAGLTNDAGW---------------------------------- 132

Query: 288 VRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
                    +   +   + +  +GD +          +P     A  QGK  A 
Sbjct: 133 ----CPVDIKTFESSIHKGIHVIGDASIANP------MPKSGYSANSQGKVAAA 176

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            I VD + +  +V++++A+GD               L  VA  +G    + +F  K
Sbjct: 190 AIKVDAYSKT-NVDNIYAIGDVTDR---------VMLTPVAINEGAAFVDTVFANK 235

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 10/49 (20%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
           + VD   R      ++A GDC G L          LA VA  QG+    
Sbjct: 184 LTVDRVSRT-LATGIYAAGDCTGLLP---------LASVAAMQGRIAMY 222

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 304 VEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
             DVFA+GD            V  ALA  A +QG++  +
Sbjct: 150 EPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVK 188

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 295 VDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           ++E ++  S   + A+GDCA F  Q   + V       A  Q + +A 
Sbjct: 134 INEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAA 180

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
           +I V+E     +V  V+A+GD             P LA  AE  G    E L  K 
Sbjct: 172 RILVNERFST-NVSGVYAIGDVIPG---------PMLAHKAEEDGVACVEYLAGKV 217

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
           + VDE+ R  +V +++A+GD               L  VA  +   L + +F   
Sbjct: 190 VQVDEYSRT-NVSNIYAIGDVTN---------RVMLTPVAINEAAALVDTVFGTT 234

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAE 341
           I VD + R  +  DV+ALGD        +G+         A+ QG  +A 
Sbjct: 130 IFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVAR 178

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 10/50 (20%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
           ++ +D+   +     +  +GD               LA  AE +G    E
Sbjct: 184 RLVIDDQFNS-KFPHIKVVGDVTFGPM---------LAHKAEEEGIAAVE 223

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 296 DEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
            +  +  +V  ++A+GD        GK     L  VA + G+ LA+ L+   
Sbjct: 188 TDEEQT-NVPYIYAIGDIL-----EGKL---ELTPVAIQAGRLLAQRLYGGS 230

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 295 VDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE 341
           +D+  R    +DV+A+GDCA +       ++   A+ A  Q + LA+
Sbjct: 122 IDDNFRTS-AKDVYAIGDCAEY-----SGIIAGTAKAAMEQARVLAD 162

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 292 QIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKKIGE 349
            I VD++    ++E ++A+GD  G +E         L  VA   G+ L+E LFN K  E
Sbjct: 166 YIVVDKYQNT-NIEGIYAVGDNTGAVE---------LTPVAVAAGRRLSERLFNNKPDE 214

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 293 IGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE-LFNKK 346
           I VD++    SV  V+A+GD               LA  A  +G  +AE +   K
Sbjct: 181 IYVDDYCA-TSVPGVYAIGDVVRGAM---------LAHKASEEGVVVAERIAGHK 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.88
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.86
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.85
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.83
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.82
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.79
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.78
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.77
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.77
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.74
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.74
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.71
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.66
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.66
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.65
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.64
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.55
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.53
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.5
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.39
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	99.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.36
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.36
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.33
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.32
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.29
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.27
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.27
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.27
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.21
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.19
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.18
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.17
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.16
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.14
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.14
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.12
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.09
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.08
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.08
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.08
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.07
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.02
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.0
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.0
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.91
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.83
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.73
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.56
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.52
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.52
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.52
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.5
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.44
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.34
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.32
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.31
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.31
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.3
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.29
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.29
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.28
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.25
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.17
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.12
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.05
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.05
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.02
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.95
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.94
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.91
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.83
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.82
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.78
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.69
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.61
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	97.59
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.52
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.45
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	97.35
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.21
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.13
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.13
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.12
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.11
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.09
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.04
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.94
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.89
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	96.72
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.6
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.47
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.44
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.34
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.24
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	96.12
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.07
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.07
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.03
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.02
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	95.97
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.96
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.9
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.84
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.82
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.79
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.66
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.24
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.21
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.21
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.93
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.86
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.68
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.6
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.56
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.32
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.1
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.08
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.0
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.97
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.92
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.83
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.83
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.76
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.66
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	93.59
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.57
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.54
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.33
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.22
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.19
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.09
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.06
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.94
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.83
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.71
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.6
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.58
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	92.48
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.38
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.16
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.07
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.04
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.87
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.86
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.45
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.45
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.41
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	91.17
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.97
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.86
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	90.82
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.81
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.8
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	90.42
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	90.36
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.3
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.18
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.02
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.98
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.77
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	89.76
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	89.71
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.39
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.28
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.26
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.75
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.59
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.35
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.92
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.8
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.76
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.66
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	87.61
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	87.54
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.48
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.39
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.24
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.87
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.85
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.77
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	86.75
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	86.74
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.7
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.57
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	86.53
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.27
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	86.15
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	86.13
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	85.99
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	85.79
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.72
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.44
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.36
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.15
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.03
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	84.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.23
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.18
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.07
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.72
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	83.23
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	83.18
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.96
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	82.33
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.15
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.93
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.8
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	81.61
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.89
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	80.69
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	80.5
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	80.48
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	80.43
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.29
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.11

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.88  E-value=1.3e-22  Score=183.43  Aligned_cols=184  Identities=23%  Similarity=0.338  Sum_probs=129.3

Q ss_pred             cEEEECCCHHHHHHHHhhccC--CCeEEEEcCCCCcccccc-hhhhhcCCCC-ccccccchhhhhhhhcCCCCEEEE-EE
Q 013561          111 RVVVLGTGWGACRFLKGIDTK--IYDAVCISPRNHMVFTPL-LASTCVGTLE-FRSVAEPVSRIQTSLSSDPNSYFY-LA  185 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~~~~~~~l-l~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~  185 (441)
                      ||+|||||++|+++|..|++.  +.+|++++++++..|.++ ++....+... .+.+.....+.   +.+ .++.+. ..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---l~~-~gi~v~~~~   77 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEK---MES-RGVNVFSNT   77 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHH---HHH-TTCEEEETE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHH---HHH-CCcEEEEee
Confidence            799999999999999999874  578999999988766543 4555544333 22333322222   222 456654 55


Q ss_pred             EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccccc
Q 013561          186 SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSE  265 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~  265 (441)
                      .|.+|+.+.+.+++.+..+      +++.+++||+||+|+|+.|+.+  +|...+...++.             .     
T Consensus        78 ~V~~i~~~~~~v~~~~~~~------g~~~~~~~D~li~a~G~~~~~~--~g~~~~~~~~~~-------------~-----  131 (198)
T d1nhpa1          78 EITAIQPKEHQVTVKDLVS------GEERVENYDKLIISPGAVPFEL--DGVRPNTAWLKG-------------T-----  131 (198)
T ss_dssp             EEEEEETTTTEEEEEETTT------CCEEEEECSEEEECCCEEECCC--CCEEESCGGGTT-------------T-----
T ss_pred             ceeeEeeccccceeeeccc------ccccccccceeeEeecceeecc--cccccccccccc-------------c-----
Confidence            8999999999999887533      3456789999999999987643  344322222210             0     


Q ss_pred             CCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccc-cCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          266 NPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLE-QTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       266 ~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~-~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                            +++            ++. |+|.||+++|| +.|+|||+|||+.++. ..+.....++++.|.+||+.+|+||.
T Consensus       132 ------~~~------------~~~-G~i~vd~~~~T-~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~  191 (198)
T d1nhpa1         132 ------LEL------------HPN-GLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE  191 (198)
T ss_dssp             ------SCB------------CTT-SCBCCCTTCBC-SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             ------cee------------ccC-CceecCCcccc-cccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhC
Confidence                  011            111 88999999999 9999999999998754 22333456789999999999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.9e-22  Score=182.07  Aligned_cols=179  Identities=15%  Similarity=0.153  Sum_probs=124.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCCcccc-cchhhhhcCCCCc-------------cccccc------
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNHMVFT-PLLASTCVGTLEF-------------RSVAEP------  166 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~~~~~-~ll~~~~~g~~~~-------------~~~~~~------  166 (441)
                      ..++||||||++|+++|..|++.|+  +|++|++++++.|. +.|+.........             .+....      
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   83 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence            4579999999999999999987654  69999998887665 3332222111100             000000      


Q ss_pred             -hhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccc
Q 013561          167 -VSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFL  244 (441)
Q Consensus       167 -~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l  244 (441)
                       .........+..++.++.+ +|++||.+.++|++.++           .+++||+||+|+|+.|+.+.+++..      
T Consensus        84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG-----------~~i~~d~lViAtG~~~~~~~l~~~~------  146 (213)
T d1m6ia1          84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG-----------SQITYEKCLIATGGTEPNVELAKTG------  146 (213)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS-----------CEEEEEEEEECCCEEEECCTTHHHH------
T ss_pred             hhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccc-----------eeeccceEEEeeeeecchhhhhhcc------
Confidence             0000001123457887775 79999999999987663           3799999999999987766555421      


Q ss_pred             cCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCC
Q 013561          245 REVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPV  324 (441)
Q Consensus       245 ~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~  324 (441)
                                     .+.+                       +...|.|.||++||+ + |+|||+|||+.+++..++..
T Consensus       147 ---------------gl~~-----------------------~~~~~~i~vd~~l~~-~-~~VyA~GD~a~~~~~~~g~~  186 (213)
T d1m6ia1         147 ---------------GLEI-----------------------DSDFGGFRVNAELQA-R-SNIWVAGDAACFYDIKLGRR  186 (213)
T ss_dssp             ---------------TCCB-----------------------CTTTCSEECCTTCEE-E-TTEEECGGGEEEEETTTEEE
T ss_pred             ---------------chhh-----------------------hhhhhhhhhhHhcCc-C-CceEEeeeeeeeccccCCcE
Confidence                           1110                       001167999999999 5 99999999999887554446


Q ss_pred             CCchHHHHHHHHHHHHHHHH
Q 013561          325 LPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       325 ~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .+++++.|++||+.||+||.
T Consensus       187 ~i~~~~~A~~~gr~aa~ni~  206 (213)
T d1m6ia1         187 RVEHHDHAVVSGRLAGENMT  206 (213)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT
T ss_pred             EeeEhHHHHHHHHHHHHHhc
Confidence            78899999999999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.85  E-value=2.4e-21  Score=170.92  Aligned_cols=179  Identities=21%  Similarity=0.193  Sum_probs=128.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      +|||||||||++|+++|..|++.+  .+|||||+++.+...++.+...................     ....+.+..+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~   76 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL-----RAHGIQVVHDS   76 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHH-----HTTTEEEECCC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhc-----cccceeEeeee
Confidence            689999999999999999998866  58999999998776666655554444333333322222     23467888888


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      +..++...+.+...+.           .+++||+||+|||++|+.+.+++........              ..+...  
T Consensus        77 ~~~~~~~~~~~~~~~~-----------~~i~~D~li~atG~~~~~~~i~~~~~~~~~~--------------~~~~~~--  129 (186)
T d1fcda1          77 ATGIDPDKKLVKTAGG-----------AEFGYDRCVVAPGIELIYDKIEQRAGKIAQI--------------AGLTND--  129 (186)
T ss_dssp             EEECCTTTTEEEETTS-----------CEEECSEEEECCCEEECCTTSTEEECHHHHH--------------HTCCCT--
T ss_pred             eEeeeeccceeecccc-----------eeeccceEEEEeccccchhhhhhhhhhheec--------------cCcccc--
Confidence            8888888887765442           4799999999999999998888753110000              000000  


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeC-CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVD-EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd-~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                                            . +++.++ +.++..+.++|||+||++..      .+.|++++.|.+||+++|+||.+
T Consensus       130 ----------------------~-~~~~~~~~~~~~~~~~~i~~iGd~~~~------~~~p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         130 ----------------------A-GWCPVDIKTFESSIHKGIHVIGDASIA------NPMPKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             ----------------------T-SSEEBCSSSCBBSSSTTEEECTTSEEC------TTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------c-ccccceeeeeecccccCceEecccccc------CCCCchHhHHHHHHHHHHHHHHH
Confidence                                  0 334444 45666689999999999843      24688999999999999999999


Q ss_pred             Hhc
Q 013561          346 KIG  348 (441)
Q Consensus       346 ~l~  348 (441)
                      .++
T Consensus       181 ~~~  183 (186)
T d1fcda1         181 LLK  183 (186)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            886

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.83  E-value=2.1e-21  Score=173.06  Aligned_cols=174  Identities=22%  Similarity=0.302  Sum_probs=114.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC--Ccccc-cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN--HMVFT-PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~--~~~~~-~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +.+|+|||||++|+++|..|++.|.+|+|++..+  ...|. +.+..........+....   .    +....+++++.+
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~----~~~~~~i~~~~~   75 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL---D----CKRAPEVEWLLG   75 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBC---C----GGGSTTCEEEET
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHH---H----HhhcCCeEEEEe
Confidence            5579999999999999999999887665555433  33222 111111100011111110   0    222346677665


Q ss_pred             -EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccc
Q 013561          186 -SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLS  264 (441)
Q Consensus       186 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a  264 (441)
                       .+..++.+...+.+.++           ++++||.||+|+|+.|+....+..               +..    ..   
T Consensus        76 ~~v~~i~~~~~~~~~~~g-----------~~~~~D~vi~a~G~~p~~~~~~~~---------------~~~----~~---  122 (183)
T d1d7ya1          76 VTAQSFDPQAHTVALSDG-----------RTLPYGTLVLATGAAPRAVLANDA---------------LAR----AA---  122 (183)
T ss_dssp             CCEEEEETTTTEEEETTS-----------CEEECSEEEECCCEEECCEEECCH---------------HHH----HT---
T ss_pred             ccccccccccceeEecCC-----------cEeeeeeEEEEEEEEccccccccc---------------ccc----ee---
Confidence             78899988888876553           388999999999999876432210               000    00   


Q ss_pred             cCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccC-CCCCCCchHHHHHHHHHHHHHHH
Q 013561          265 ENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQT-GKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       265 ~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~-G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                         |                 +..+ ++|.||+++|| +.|+|||+|||+..+++. |.....++++.|++||+.+|+||
T Consensus       123 ---g-----------------l~~~-~~I~vd~~~~t-s~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~ni  180 (183)
T d1d7ya1         123 ---G-----------------LACD-DGIFVDAYGRT-TCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHL  180 (183)
T ss_dssp             ---T-----------------CCBS-SSEECCTTCBC-SSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHH
T ss_pred             ---e-----------------EeeC-CcEEeccceec-cccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHH
Confidence               0                 0011 56999999999 999999999999887654 33233468999999999999999


Q ss_pred             H
Q 013561          344 N  344 (441)
Q Consensus       344 ~  344 (441)
                      .
T Consensus       181 l  181 (183)
T d1d7ya1         181 V  181 (183)
T ss_dssp             H
T ss_pred             c
Confidence            7

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=8.5e-21  Score=168.57  Aligned_cols=175  Identities=22%  Similarity=0.277  Sum_probs=114.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++|||||||++|+++|..|++.|.+|+|++..+.....    +++.....+..............    .......+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   78 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDA----YAAQNIQLLG   78 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHH----HHHTTEEEEC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhh----hcccceeeec
Confidence            569999999999999999999999888877666543211    22222222222211111111111    1112333433


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      . .+..++.+...+...+.           .++.+|.+++++|..|+.|++...+                 ..  .+. 
T Consensus        79 ~~~~~~~~~~~~~v~~~~~-----------~~i~~d~~i~~~G~~~~~~~~~~~~-----------------~~--~~~-  127 (185)
T d1q1ra1          79 GTQVTAINRDRQQVILSDG-----------RALDYDRLVLATGGRPLIPNCELAS-----------------AA--GLQ-  127 (185)
T ss_dssp             SCCEEEEETTTTEEEETTS-----------CEEECSEEEECCCEEEEEECCHHHH-----------------HT--TCC-
T ss_pred             cceeeeecccccEEEeece-----------eEEEeeeeeeeeecccCCCCchhHH-----------------hC--Ccc-
Confidence            3 56667777776655442           4899999999999988766432110                 00  000 


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEeccccccccc-CCCCCCCchHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQ-TGKPVLPALAQVAERQGKYLAEL  342 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~-~G~~~~p~~a~~A~~qg~~aA~n  342 (441)
                                              .+ |.|.||++||| +.|+|||+|||+.+++. .|....+++++.|++||+.||+|
T Consensus       128 ------------------------~~-~~i~Vd~~~~t-s~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~  181 (185)
T d1q1ra1         128 ------------------------VD-NGIVINEHMQT-SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI  181 (185)
T ss_dssp             ------------------------BS-SSEECCTTSBC-SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHH
T ss_pred             ------------------------cc-CccccCCcccc-chhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHH
Confidence                                    01 67999999999 99999999999988653 23333467999999999999999


Q ss_pred             HH
Q 013561          343 FN  344 (441)
Q Consensus       343 I~  344 (441)
                      |.
T Consensus       182 i~  183 (185)
T d1q1ra1         182 LC  183 (185)
T ss_dssp             HT
T ss_pred             cc
Confidence            86

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.82  E-value=2.8e-20  Score=162.90  Aligned_cols=162  Identities=25%  Similarity=0.410  Sum_probs=113.5

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc-cchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EEE
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT-PLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SCI  188 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~-~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~  188 (441)
                      ||+|||||++|+++|..|++ +.+|||+++++...|. +.+.....+....+.+.......   + ...+++++.+ .+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~v~   76 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW---Y-RKRGIEIRLAEEAK   76 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHH---H-HHHTEEEECSCCEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHH---H-Hhccceeeeecccc
Confidence            89999999999999999976 6799999999876655 44555555544433332222222   1 1235666644 688


Q ss_pred             EEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCC
Q 013561          189 GIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPG  268 (441)
Q Consensus       189 ~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G  268 (441)
                      .++...+.+....            .+++||+|++|+|..|..+    .                 ..  ..+       
T Consensus        77 ~i~~~~~~~~~~~------------~~i~~D~li~a~G~~~~~~----~-----------------~~--~gl-------  114 (167)
T d1xhca1          77 LIDRGRKVVITEK------------GEVPYDTLVLATGAPNVDL----A-----------------RR--SGI-------  114 (167)
T ss_dssp             EEETTTTEEEESS------------CEEECSEEEECCCEECCHH----H-----------------HH--TTC-------
T ss_pred             ccccccccccccc------------cccccceeEEEEEecCCch----h-----------------hh--cCc-------
Confidence            8887766554322            3799999999999755311    0                 00  001       


Q ss_pred             CceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          269 DTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       269 ~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                          +..               +.|.||+++|| +.|+|||+|||+..+.     ..+..+..|++||+.+|+||.
T Consensus       115 ----~~~---------------~~i~v~~~~~t-~~~~i~aiGD~~~~~~-----~~~~~~~~a~~~a~~~a~~i~  165 (167)
T d1xhca1         115 ----HTG---------------RGILIDDNFRT-SAKDVYAIGDCAEYSG-----IIAGTAKAAMEQARVLADILK  165 (167)
T ss_dssp             ----CBS---------------SSEECCTTSBC-SSTTEEECGGGEEBTT-----BCCCSHHHHHHHHHHHHHHHT
T ss_pred             ----eeC---------------CceeeccccEe-cCCCeEEeeecccCCC-----eEEChHHHHHHHHHHHHHHcC
Confidence                110               45899999999 9999999999996532     456789999999999999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.80  E-value=3.2e-19  Score=167.91  Aligned_cols=176  Identities=17%  Similarity=0.135  Sum_probs=110.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh--------------hc---CCCCccccccch
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST--------------CV---GTLEFRSVAEPV  167 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~--------------~~---g~~~~~~~~~~~  167 (441)
                      ..+|+||||||+|+++|..+++.|.+|+|||+.+.++-.    ++.|..              ..   +...........
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  121 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI  121 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccH
Confidence            457999999999999999999999999999998876411    111100              00   000000000001


Q ss_pred             hhhh----------------hhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCC
Q 013561          168 SRIQ----------------TSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLT  231 (441)
Q Consensus       168 ~~~~----------------~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~  231 (441)
                      ....                ..+........+.+...-++.  +++...            .+++++|+|++|+|++|+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~--~~v~~~------------g~~i~ad~viiAtG~~P~~  187 (261)
T d1mo9a1         122 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA------------GKVFKAKNLILAVGAGPGT  187 (261)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET------------TEEEEBSCEEECCCEECCC
T ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeee--cccccc------------cceEeeeeeeeccCCCCCc
Confidence            1000                001122223333333333332  333321            1478999999999999999


Q ss_pred             CCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEec
Q 013561          232 FGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALG  311 (441)
Q Consensus       232 ~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~G  311 (441)
                      +++|+.+..      .+    +.+.+             |+|+-            ++ |+|.||++||| +.|+|||+|
T Consensus       188 ~~i~~~~~~------~~----l~~~~-------------Gl~~~------------~~-G~I~Vn~~~~T-s~~~IyA~G  230 (261)
T d1mo9a1         188 LDVPEQPRS------AE----LAKIL-------------GLDLG------------PK-GEVLVNEYLQT-SVPNVYAVG  230 (261)
T ss_dssp             CCSTCEECC------HH----HHHHH-------------TCCBC------------TT-SCBCCCTTSBC-SSTTEEECG
T ss_pred             Ccccccccc------cc----cccce-------------eeeec------------cC-CEEEeCCCccc-CCCCEEEEE
Confidence            999986311      11    11111             12221            22 88999999999 999999999


Q ss_pred             ccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          312 DCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       312 D~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+         ..|.+++.|+.||++||.||.
T Consensus       231 Dv~---------~~~~l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         231 DLI---------GGPMEMFKARKSGCYAARNVM  254 (261)
T ss_dssp             GGG---------CSSCSHHHHHHHHHHHHHHHT
T ss_pred             EeC---------CCcccHHHHHHHHHHHHHHHC
Confidence            998         247899999999999999996

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.79  E-value=3.3e-20  Score=169.55  Aligned_cols=176  Identities=22%  Similarity=0.218  Sum_probs=109.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhh-----------------hcCCCCcc-ccc--
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLAST-----------------CVGTLEFR-SVA--  164 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~-----------------~~g~~~~~-~~~--  164 (441)
                      ..+|+||||||||+++|.++++.|.+|+|||+++.++-.    .+.+..                 ..|..... .+.  
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   82 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   82 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHH
Confidence            468999999999999999999999999999998765311    000000                 00110000 000  


Q ss_pred             ----------cchhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc--CCC
Q 013561          165 ----------EPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP--LTF  232 (441)
Q Consensus       165 ----------~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p--~~~  232 (441)
                                ..+.+....+.+..++.++.....-++..  ........       .....+.+|.+|||||++|  +.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--~~~~~~~~-------~~~~~~~a~~VIiATGs~~~gr~p  153 (221)
T d1dxla1          83 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPS--EISVDTIE-------GENTVVKGKHIIIATGSDVKGRTP  153 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETT--EEEECCSS-------SCCEEEECSEEEECCCEEECCEEE
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhcCCeEEEEecccccccc--cccccccc-------ccccccccceEEEeECCCccCccc
Confidence                      00011111122234666766655544433  22222211       2235789999999999876  344


Q ss_pred             CCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecc
Q 013561          233 GIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGD  312 (441)
Q Consensus       233 ~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD  312 (441)
                      +.+++.     +                 +      ..++|+.+            . |+|.||+++|| ++|+|||+||
T Consensus       154 ~~~~l~-----l-----------------~------~~gv~~~~------------~-G~i~vd~~~~T-~v~gi~A~GD  191 (221)
T d1dxla1         154 FTSGLN-----L-----------------D------KIGVETDK------------L-GRILVNERFST-NVSGVYAIGD  191 (221)
T ss_dssp             CCTTSC-----C-----------------T------TTTCCBCS------------S-SCBCCCTTCBC-SSTTEEECST
T ss_pred             cCCCCC-----h-----------------H------hcCceEcC------------C-CcEEeCCCccc-CCCCEEEEec
Confidence            444331     1                 0      11223322            1 89999999999 9999999999


Q ss_pred             cccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          313 CAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       313 ~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+         ..|.+++.|+.+|+.||++|.
T Consensus       192 v~---------~g~~l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         192 VI---------PGPMLAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             TS---------SSCCCHHHHHHHHHHHHHHHT
T ss_pred             cC---------CCcccHHHHHHHHHHHHHHHc
Confidence            98         247899999999999999986

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=1.5e-19  Score=165.16  Aligned_cols=180  Identities=22%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhh-----------hh---c--CCC-Ccccc-----
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAS-----------TC---V--GTL-EFRSV-----  163 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~-----------~~---~--g~~-~~~~~-----  163 (441)
                      ..+|+||||||||++||.++++.|.+|+|||+...-+   ...+.+.           ..   .  +.. ....+     
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHH
Confidence            3589999999999999999999999999999875211   0000000           00   0  000 00000     


Q ss_pred             -------ccchhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561          164 -------AEPVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG  236 (441)
Q Consensus       164 -------~~~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG  236 (441)
                             ...+......+.+..+++++.++..-.+.....+....          ....+..|.+|||+|..|...  .|
T Consensus        83 ~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~----------~~~~~~~~~iiIa~g~~p~~~--~G  150 (223)
T d1ebda1          83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGD----------SAQTYTFKNAIIATGSRPIEL--VG  150 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETT----------EEEEEECSEEEECCCEEECCB--SC
T ss_pred             hhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccc----------cceEEecccEEEEcCCCcccc--cc
Confidence                   00011111112334678888876654444333332211          124788999999998876432  12


Q ss_pred             cccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccc
Q 013561          237 VKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGF  316 (441)
Q Consensus       237 ~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~  316 (441)
                      ...+.-.+               .++      ..|+|+-+            . |+|.||+++|| |.|+|||+|||+  
T Consensus       151 ~~p~~~~l---------------~l~------~~gv~~~~------------~-G~I~vd~~~~T-~~~gvyA~GDv~--  193 (223)
T d1ebda1         151 RRPNTDEL---------------GLE------QIGIKMTN------------R-GLIEVDQQCRT-SVPNIFAIGDIV--  193 (223)
T ss_dssp             EEESCSSS---------------STT------TTTCCBCT------------T-SCBCCCTTCBC-SSTTEEECGGGS--
T ss_pred             ceecCCCC---------------ChH------hcCceECC------------C-CCEeECCCCCC-CCCCEEEEeccC--
Confidence            21110000               000      11233322            2 89999999999 999999999998  


Q ss_pred             cccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          317 LEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       317 ~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                             ..|.+++.|+.||+.||++|.
T Consensus       194 -------~~~~~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         194 -------PGPALAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             -------SSCCCHHHHHHHHHHHHHHHT
T ss_pred             -------CCcccHHHHHHHHHHHHHHHc
Confidence                   246789999999999999997

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=7.5e-19  Score=162.61  Aligned_cols=182  Identities=20%  Similarity=0.199  Sum_probs=110.0

Q ss_pred             CcEEEECCCHHHHHHHHhhcc---CCCeEEEEcCCCCcc---cccchhh-----------hhc-----CC-CCccccccc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT---KIYDAVCISPRNHMV---FTPLLAS-----------TCV-----GT-LEFRSVAEP  166 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~---~g~~Vtvie~~~~~~---~~~ll~~-----------~~~-----g~-~~~~~~~~~  166 (441)
                      .||+||||||||++||.++++   .+++|+|||+..--+   +..+.|.           ...     |. ...++....
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d   81 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS   81 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceee
Confidence            489999999999999987654   567899999865211   0111111           000     10 011111111


Q ss_pred             hhhh--------------hhhhcCCCCEEEEEEEEEEEeCCC----CEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCC
Q 013561          167 VSRI--------------QTSLSSDPNSYFYLASCIGIDTDK----HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAE  228 (441)
Q Consensus       167 ~~~~--------------~~~~~~~~~v~~~~~~v~~id~~~----~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~  228 (441)
                      +..+              ...+.+..++.++.+...-++...    ..+.+...+       ++..++++|.+++|||+.
T Consensus        82 ~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~d-------g~~~~i~ad~viiAtG~~  154 (233)
T d1xdia1          82 LPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAAD-------GSTSEHEADVVLVATGAS  154 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTT-------SCEEEEEESEEEECCCEE
T ss_pred             eeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecC-------CceeeeecceeeeecCcc
Confidence            1110              011122357888877665554322    344444321       334579999999999999


Q ss_pred             cCCCCCCCcc-cccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCE
Q 013561          229 PLTFGIKGVK-ENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDV  307 (441)
Q Consensus       229 p~~~~ipG~~-~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~V  307 (441)
                      |+.+...... ...+.                 +      ...++|+.+.             |+|.||++||| +.|+|
T Consensus       155 p~~~~~~~~~~~~~l~-----------------l------~~~gv~~~~~-------------G~I~vd~~~~T-~~~gI  197 (233)
T d1xdia1         155 PRILPSGSVPNTSGLG-----------------L------ERVGIQLGRG-------------NYLTVDRVSRT-LATGI  197 (233)
T ss_dssp             ECCCGGCEEECCSSSC-----------------T------TTTTCCCBTT-------------TBCCCCSSSBC-SSTTE
T ss_pred             cccccccccccccccc-----------------c------chhhhcccCC-------------CcCCcCCCccc-CCCCE
Confidence            8876433221 00000                 0      1122333322             88999999999 99999


Q ss_pred             EEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          308 FALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       308 fA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+|||+      |   .+++++.|..||++||.||.
T Consensus       198 yA~GDv~------~---~~~l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         198 YAAGDCT------G---LLPLASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             EECSGGG------T---SCSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEeC------C---CchhHHHHHHHHHHHHHHHc
Confidence            9999998      2   36789999999999999997

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=8e-19  Score=161.96  Aligned_cols=182  Identities=16%  Similarity=0.158  Sum_probs=112.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc------c-cc-----hhhhh----------------cCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF------T-PL-----LASTC----------------VGTLEFR  161 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~------~-~l-----l~~~~----------------~g~~~~~  161 (441)
                      .+|+||||||||++||.++++.|.+|+|||+.+....      . .+     ++...                .|.....
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~   83 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLED   83 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhcccccccc
Confidence            4799999999999999999999999999997653210      0 00     00000                0110000


Q ss_pred             ccccchhhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          162 SVAEPVSRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       162 ~~~~~~~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                      ........+              ...+.+..++.++.+...-.+.  +.+.+....       ++...+.+|.+++++|+
T Consensus        84 ~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~--~~~~v~~~~-------~~~~~i~a~~ivi~~G~  154 (235)
T d1h6va1          84 TVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGP--HKIMATNNK-------GKEKVYSAERFLIATGE  154 (235)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEET--TEEEEECTT-------SCEEEEEEEEEEECCCE
T ss_pred             ceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccc--cceeccccc-------ccccccccccceeecCC
Confidence            011111111              0111223467777776655543  334333321       23356899999999999


Q ss_pred             CcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCE
Q 013561          228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDV  307 (441)
Q Consensus       228 ~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~V  307 (441)
                      .|+.+++.......+.+                       ...+||+.            .+.|+|.||++||| |.|+|
T Consensus       155 ~p~~~~i~~~~~~~~~l-----------------------~~~gv~l~------------~~~g~I~vd~~~~T-svpgI  198 (235)
T d1h6va1         155 RPRYLGIRDSCTRTIGL-----------------------ETVGVKIN------------EKTGKIPVTDEEQT-NVPYI  198 (235)
T ss_dssp             EECCCSSEEESCTTSCC-----------------------TTTTCCCC------------SSSCCBCCCTTSBC-SSTTE
T ss_pred             CceeEEEeeccceeecc-----------------------ccceeeec------------cccCccccCCcccc-CCCCE
Confidence            99887664332111110                       11122322            22288999999999 99999


Q ss_pred             EEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          308 FALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       308 fA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+|||+.     |   .+.+++.|+.||++||++|.
T Consensus       199 yA~GDv~~-----g---~~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         199 YAIGDILE-----G---KLELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             EECGGGBT-----T---SCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccC-----C---CcccHHHHHHHHHHHHHHHc
Confidence            99999982     2   36789999999999999997

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-18  Score=158.07  Aligned_cols=177  Identities=18%  Similarity=0.088  Sum_probs=108.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc---ccc------hh-----hh-----hcCCCCccccccchhh-
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF---TPL------LA-----ST-----CVGTLEFRSVAEPVSR-  169 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~---~~l------l~-----~~-----~~g~~~~~~~~~~~~~-  169 (441)
                      .+|+||||||||++||.++++.|.+|+|||+...-+.   ..+      ++     ..     ....... ........ 
T Consensus         4 yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~   82 (221)
T d3grsa1           4 YDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC-EGKFNWRVI   82 (221)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCC-CCCCCHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhcccccc-ccchhhhhh
Confidence            5799999999999999999999999999998653210   000      00     00     0000000 00000000 


Q ss_pred             -------------hhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCC
Q 013561          170 -------------IQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKG  236 (441)
Q Consensus       170 -------------~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG  236 (441)
                                   ......+..+++++.+..........++...            ..++..|.++|++|+.|..|.  |
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~------------~~~~~~~~~~iatG~~p~vp~--~  148 (221)
T d3grsa1          83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVS------------GKKYTAPHILIATGGMPSTPH--E  148 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEET------------TEEEECSCEEECCCEEECCCC--T
T ss_pred             hhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeee------------ccccccceeEEecCccccCCC--c
Confidence                         0001122357788777554443333333221            137789999999999887663  2


Q ss_pred             cccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccc
Q 013561          237 VKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGF  316 (441)
Q Consensus       237 ~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~  316 (441)
                      ...+.-.+               .++.      .+||+-+            . |+|.||+++|| |.|+|||+|||+  
T Consensus       149 r~p~~~~l---------------~L~~------~gv~~~~------------~-G~I~vd~~~~T-~~~gvyA~GDv~--  191 (221)
T d3grsa1         149 RVPNTKDL---------------SLNK------LGIQTDD------------K-GHIIVDEFQNT-NVKGIYAVGDVC--  191 (221)
T ss_dssp             EEESCTTT---------------TGGG------TTCCBCT------------T-SCBCCCTTCBC-SSTTEEECGGGG--
T ss_pred             cccCCCCc---------------Cchh------cCcEECC------------C-ccEEeCCCccc-cCCcEEEEEEcc--
Confidence            11111000               0111      1233322            2 89999999999 999999999998  


Q ss_pred             cccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013561          317 LEQTGKPVLPALAQVAERQGKYLAELFNK  345 (441)
Q Consensus       317 ~~~~G~~~~p~~a~~A~~qg~~aA~nI~~  345 (441)
                          +   .+.+++.|+.||+.||++|..
T Consensus       192 ----~---~~~l~~~A~~~G~~aa~~~~~  213 (221)
T d3grsa1         192 ----G---KALLTPVAIAAGRKLAHRLFE  213 (221)
T ss_dssp             ----T---SSCCHHHHHHHHHHHHHHHHS
T ss_pred             ----C---CcCcHHHHHHHHHHHHHHHcC
Confidence                2   367899999999999999983

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.74  E-value=1.3e-18  Score=159.01  Aligned_cols=180  Identities=21%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc----ccc------chhh------------hh-----cCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV----FTP------LLAS------------TC-----VGTLEF  160 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~----~~~------ll~~------------~~-----~g~~~~  160 (441)
                      ++.+|+|||||||||+||.++++.|.+|+|||+.....    +.+      +.+.            ..     .|.. .
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~-~   80 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS-T   80 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE-C
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccc-c
Confidence            36799999999999999999999999999999865321    110      0000            00     0100 0


Q ss_pred             cccccch--------------hhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          161 RSVAEPV--------------SRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       161 ~~~~~~~--------------~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      .......              ......+.+..++.++.+.....+......  ....       .+...+..+.+++|+|
T Consensus        81 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~i~atG  151 (229)
T d3lada1          81 GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEV--TAAD-------GSSQVLDTENVILASG  151 (229)
T ss_dssp             SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEE--ECTT-------SCEEEECCSCEEECCC
T ss_pred             CcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeec--cccC-------ccceeeecccccccCC
Confidence            0000000              001111223356777777665554433222  2211       2234678999999999


Q ss_pred             CCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCC
Q 013561          227 AEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVED  306 (441)
Q Consensus       227 s~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~  306 (441)
                      ++|..++.....+..                    .    .-..|+++-+            . |+|.||+++|| +.|+
T Consensus       152 ~~~~~~~~~~~~~~~--------------------~----~~~~gv~l~~------------~-G~i~vd~~~~T-~vpg  193 (229)
T d3lada1         152 SKPVEIPRRPVTTDL--------------------L----AADSGVTLDE------------R-GFIYVDDYCAT-SVPG  193 (229)
T ss_dssp             EEECCCTEEECCTTC--------------------C----SSCCSCCBCT------------T-SCBCCCTTSBC-SSTT
T ss_pred             ccccccccccccccc--------------------c----hHhcCeeecC------------C-CcEEecccccC-CCCC
Confidence            988665322111110                    0    0112233322            2 89999999999 9999


Q ss_pred             EEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          307 VFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       307 VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |||+|||+         ..|.+++.|..+|+.+|++|.
T Consensus       194 iyA~GDv~---------~g~~l~~~A~~~G~~aa~~i~  222 (229)
T d3lada1         194 VYAIGDVV---------RGAMLAHKASEEGVVVAERIA  222 (229)
T ss_dssp             EEECGGGS---------SSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCc---------chHHHHHHHHHHHHHHHHHHc
Confidence            99999998         246789999999999999997

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=5.4e-18  Score=155.01  Aligned_cols=172  Identities=19%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc---cccchhh------------hh-------cCCCCccccccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV---FTPLLAS------------TC-------VGTLEFRSVAEP  166 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~---~~~ll~~------------~~-------~g~~~~~~~~~~  166 (441)
                      ..+|+||||||||+++|..+++.|.+|+|||++..-+   +..+.+.            ..       .+. ........
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~   83 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGI-SVASPRLD   83 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceE-Eeccceeh
Confidence            5689999999999999999999999999999874210   0000000            00       000 00000000


Q ss_pred             hhhh--------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCC
Q 013561          167 VSRI--------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTF  232 (441)
Q Consensus       167 ~~~~--------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~  232 (441)
                      ....              ...+.+...+.++.+...-++..  .+...            ..++.+|.++||||++|..+
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~--~~~~~------------~~~i~a~~viiAtG~~p~~l  149 (220)
T d1lvla1          84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGK--QVEVD------------GQRIQCEHLLLATGSSSVEL  149 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETT--EEEET------------TEEEECSEEEECCCEEECCB
T ss_pred             HHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcc--ccccc------------ceeEeeceeeEcCCCCcccc
Confidence            0000              00112234566666655444432  22211            24799999999999998765


Q ss_pred             C-CCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEec
Q 013561          233 G-IKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALG  311 (441)
Q Consensus       233 ~-ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~G  311 (441)
                      + .+... .. .                 +.      ..++++..              |+|.||+++|| +.|+|||+|
T Consensus       150 p~~~~~~-~~-~-----------------~~------~~~~~~~~--------------g~i~vd~~~~T-~~~~I~A~G  189 (220)
T d1lvla1         150 PRRPRTK-GF-N-----------------LE------CLDLKMNG--------------AAIAIDERCQT-SMHNVWAIG  189 (220)
T ss_dssp             TEEECCS-SS-S-----------------GG------GSCCCEET--------------TEECCCTTCBC-SSTTEEECG
T ss_pred             ccccccc-CC-c-----------------ce------eeehhhcC--------------Ccccccchhhc-CCCCEEEEE
Confidence            3 11110 00 0                 00      00111111              78999999999 999999999


Q ss_pred             ccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          312 DCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       312 D~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      ||+      |   .|.+++.|..||+.+|++|.
T Consensus       190 Dv~------~---~~~l~~~a~~~g~~~a~~i~  213 (220)
T d1lvla1         190 DVA------G---EPMLAHRAMAQGEMVAEIIA  213 (220)
T ss_dssp             GGG------C---SSCCHHHHHHHHHHHHHHHT
T ss_pred             EeC------C---cccchhhhhhhHHHHHHHHc
Confidence            999      3   47899999999999999986

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.7e-17  Score=148.33  Aligned_cols=177  Identities=14%  Similarity=0.084  Sum_probs=113.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhh--cCCCCccccccchhhhhhhhcCCCCEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTC--VGTLEFRSVAEPVSRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (441)
                      .++|+||||||+||+||..|++.|.+|+|||+.+............  .+.++.. ....+.+.........++.+..++
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   83 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL-TGPLLMERMHEHATKFETEIIFDH   83 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSC-BHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhcccccc-chHHHHHHHHHHHHhcCcEEecce
Confidence            5689999999999999999999999999999876533111100000  0111110 011111111111223456677778


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccC
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSEN  266 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~  266 (441)
                      |+.++...+.+.+....          ..+..+.+++++|..++... |...    .+..             .      
T Consensus        84 V~~~~~~~~~~~v~~~~----------~~~~~~~viva~G~~~~~~~-~~~~----~~~~-------------~------  129 (190)
T d1trba1          84 INKVDLQNRPFRLNGDN----------GEYTCDALIIATGASARYHS-PNTA----IFEG-------------Q------  129 (190)
T ss_dssp             EEEEECSSSSEEEEESS----------CEEEEEEEEECCCEEECCEE-ESCG----GGTT-------------T------
T ss_pred             eEEEecCCCcEEEEEee----------eeEeeeeeeeecceeeeeec-ccce----eecc-------------e------
Confidence            99998888766665532          37889999999998775321 1110    0000             0      


Q ss_pred             CCCceeEeeCceEEEEccCCcccCCceeeC-----CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013561          267 PGDTVQLFSKYFVITITLSFLVRLSQIGVD-----EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAE  341 (441)
Q Consensus       267 ~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd-----~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~  341 (441)
                           +|+.+              |.|.||     +.++| +.|+|||+|||+..        ...+++.|+.+|..||.
T Consensus       130 -----~e~~~--------------g~i~~~~~~~~~~~~T-~v~gV~aaGDv~~~--------~~~q~i~Aag~G~~AA~  181 (190)
T d1trba1         130 -----LELEN--------------GYIKVQSGIHGNATQT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMAAL  181 (190)
T ss_dssp             -----SCEET--------------TEECCCCSSSSCTTBC-SSTTEEECGGGGCS--------SSCCHHHHHHHHHHHHH
T ss_pred             -----EecCC--------------cEEEEecCCccccccc-ccCeEEEeEEecCc--------ceeEEEEEeccHHHHHH
Confidence                 11111              678887     45688 99999999999821        24689999999999999


Q ss_pred             HHHHHhc
Q 013561          342 LFNKKIG  348 (441)
Q Consensus       342 nI~~~l~  348 (441)
                      ++.++|+
T Consensus       182 ~a~~yl~  188 (190)
T d1trba1         182 DAERYLD  188 (190)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999985

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.66  E-value=7.3e-17  Score=148.34  Aligned_cols=44  Identities=36%  Similarity=0.539  Sum_probs=40.9

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      |+|+||+++|| |.|+|||+|||+      |   .|.+++.|+.||++||+||.
T Consensus       179 G~I~vd~~~~T-svpgVyAaGDv~------~---~~~l~~~A~~eG~~Aa~~i~  222 (229)
T d1ojta1         179 GFIEVDKQMRT-NVPHIYAIGDIV------G---QPMLAHKAVHEGHVAAENCA  222 (229)
T ss_dssp             SCCCCCTTSBC-SSTTEEECGGGT------C---SSCCHHHHHHHHHHHHHHHT
T ss_pred             CCEEcCCCccC-CCCCEEEEEecC------C---CcchHHHHHHHHHHHHHHHc
Confidence            89999999999 999999999998      3   46799999999999999996

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.66  E-value=2.7e-16  Score=145.36  Aligned_cols=185  Identities=18%  Similarity=0.184  Sum_probs=111.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCccc-------cc-----chhhh----------------hcCC-C
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVF-------TP-----LLAST----------------CVGT-L  158 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~-------~~-----ll~~~----------------~~g~-~  158 (441)
                      ..+|+||||||||++||.++++.|. +|+|+|+......       ..     +.|..                ..|. .
T Consensus         3 ~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~~   82 (240)
T d1feca1           3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (240)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhccccccccccccccccccccc
Confidence            5689999999999999999999875 5999998764210       01     11110                0111 0


Q ss_pred             Cccccccchhhh---------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561          159 EFRSVAEPVSRI---------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI  223 (441)
Q Consensus       159 ~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl  223 (441)
                      ....+...+..+               ...+.+.+++.++.+.....+..  .+.......   ......+.+..|.+++
T Consensus        83 ~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~--~~~~~~~~~---~~~~~~e~i~~~~i~i  157 (240)
T d1feca1          83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNH--TVLVRESAD---PNSAVLETLDTEYILL  157 (240)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETT--EEEEESSSS---TTSCEEEEEEEEEEEE
T ss_pred             cccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccc--ccccccccc---ccccceEEEecceEEE
Confidence            111111111111               11234456788877765544432  222222100   1112334688999999


Q ss_pred             cCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCC
Q 013561          224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPS  303 (441)
Q Consensus       224 AtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~  303 (441)
                      ++|+.|...++.-.  ....+               .++.+      +||+.+.             |+|.||+++|| |
T Consensus       158 a~G~~p~~~~~~~~--~~~~l---------------~l~~~------gv~~~~~-------------G~I~vd~~~~T-s  200 (240)
T d1feca1         158 ATGSWPQHLGIEVP--RSQTL---------------QLEKA------GVEVAKN-------------GAIKVDAYSKT-N  200 (240)
T ss_dssp             CCCEEECCCCSBEE--SCTTS---------------CGGGG------TCCBCTT-------------SCBCCCTTCBC-S
T ss_pred             ecCCceeEcccccc--ccCCC---------------Ccccc------CeEECCC-------------CcEEcCcccCc-C
Confidence            99999876543211  00011               01111      1333221             89999999999 9


Q ss_pred             CCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          304 VEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       304 ~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .|+|||+|||+      +   .+.+++.|+.||+.||++|.
T Consensus       201 ~~~iyA~GDv~------~---~~~~~~~A~~eg~~aa~~~~  232 (240)
T d1feca1         201 VDNIYAIGDVT------D---RVMLTPVAINEGAAFVDTVF  232 (240)
T ss_dssp             STTEEECGGGG------C---SCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECC------C---CccchhhHHHHHHHHHHHHh
Confidence            99999999998      2   46889999999999999997

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=6.8e-17  Score=148.12  Aligned_cols=179  Identities=15%  Similarity=0.165  Sum_probs=105.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchh------------hhh-----cCCCCcccccc--
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLA------------STC-----VGTLEFRSVAE--  165 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~------------~~~-----~g~~~~~~~~~--  165 (441)
                      ..+|+||||||||++||.++++.|.+|+|||+++.++..    .+.+            ...     .|.........  
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~   84 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecch
Confidence            568999999999999999999999999999998775321    1110            000     01100000000  


Q ss_pred             ------------chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE--------cC
Q 013561          166 ------------PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI--------AA  225 (441)
Q Consensus       166 ------------~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl--------At  225 (441)
                                  .+......+.+..++.++.++..-++.  +.+.+....... ........++.+.+++        ++
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~  161 (233)
T d1v59a1          85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDE--TKIRVTPVDGLE-GTVKEDHILDVKNIIVATGSEVTPFV  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSS--SEEEEECCTTCT-TCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred             hhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecC--CCcEEEeccccc-ceeeeeeeccCCeEEEecccccceec
Confidence                        000001113334567777776654433  334443321110 0001112345666666        44


Q ss_pred             CCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCC
Q 013561          226 GAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVE  305 (441)
Q Consensus       226 Gs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~  305 (441)
                      |.+|+++   ++     .+                       ...|+|+.+.             |+|.||+++|| +.|
T Consensus       162 G~~p~~~---~l-----~l-----------------------~~~gv~~~~~-------------g~i~vd~~~~T-~~~  196 (233)
T d1v59a1         162 GRRPYIA---GL-----GA-----------------------EKIGLEVDKR-------------GRLVIDDQFNS-KFP  196 (233)
T ss_dssp             CEEECCT---TS-----CT-----------------------TTTTCCBCTT-------------SCBCCCTTSBC-SST
T ss_pred             ccccCCC---Cc-----Cc-----------------------hhcCeEEcCC-------------CcEEECCeEec-CCC
Confidence            4444332   21     00                       1112333221             88999999999 999


Q ss_pred             CEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          306 DVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       306 ~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      +|||+|||+         ..|.+++.|+.+|+.||++|.
T Consensus       197 ~v~A~GD~~---------~g~~l~~~a~~~G~~aa~~i~  226 (233)
T d1v59a1         197 HIKVVGDVT---------FGPMLAHKAEEEGIAAVEMLK  226 (233)
T ss_dssp             TEEECGGGS---------SSCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCc---------ccHHHHHHHHHHHHHHHHHHc
Confidence            999999998         246899999999999999997

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=2.1e-16  Score=141.51  Aligned_cols=178  Identities=16%  Similarity=0.063  Sum_probs=112.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc--cchhhh-----hcCCCCccccccchhhhhhhhcCCCCEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT--PLLAST-----CVGTLEFRSVAEPVSRIQTSLSSDPNSY  181 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~--~ll~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~v~  181 (441)
                      .++|+||||||+|++||..|++.|.+|+|+|+.......  +.+...     ..+.+....-...+.++.+. .++.++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q-~~~~g~~   83 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQ-SERFGTT   83 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHH-HHHTTCE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHH-HHhhcce
Confidence            569999999999999999999999999999987643221  111000     00111110000111111111 1223667


Q ss_pred             EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhc
Q 013561          182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNL  261 (441)
Q Consensus       182 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~  261 (441)
                      +....|.+++...+...+...          ..+..+|.+++++|.....+. |..    -.+++               
T Consensus        84 i~~~~V~~~~~~~~~~~v~~~----------~~~~~~~~~~~a~g~~~~g~~-p~~----~~~~~---------------  133 (192)
T d1vdca1          84 IFTETVTKVDFSSKPFKLFTD----------SKAILADAVILAIGAVAKGHE-PAT----KFLDG---------------  133 (192)
T ss_dssp             EECCCCCEEECSSSSEEEECS----------SEEEEEEEEEECCCEEECCEE-ESC----GGGTT---------------
T ss_pred             eeeeeEEecccccCcEEeccc----------ceeeeeeeEEEEeeeeecccC-chH----HHhcC---------------
Confidence            777788888887776555442          136789999999997532110 110    01100               


Q ss_pred             ccccCCCCceeEeeCceEEEEccCCcccCCceeeCC-CcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHH
Q 013561          262 MLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDE-WLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLA  340 (441)
Q Consensus       262 ~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~-~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA  340 (441)
                               ++|+-            .. |+|.+|+ +++| +.|+|||+|||+..        ....+..|+.+|..||
T Consensus       134 ---------~veld------------~~-G~i~~~~~~~~T-s~~GV~a~GDv~~~--------~~r~~v~A~g~G~~aA  182 (192)
T d1vdca1         134 ---------GVELD------------SD-GYVVTKPGTTQT-SVPGVFAAGDVQDK--------KYRQAITAAGTGCMAA  182 (192)
T ss_dssp             ---------SSCBC------------TT-SCBCCCTTSCBC-SSTTEEECGGGGCS--------SCCCHHHHHHHHHHHH
T ss_pred             ---------ceeec------------CC-CeEEeCCCceEe-cCCCEEEeeecCCc--------ccceEEEEEechHHHH
Confidence                     11221            12 8899986 7888 99999999999832        2246899999999999


Q ss_pred             HHHHHHhc
Q 013561          341 ELFNKKIG  348 (441)
Q Consensus       341 ~nI~~~l~  348 (441)
                      .++..+|+
T Consensus       183 ~~~~~yl~  190 (192)
T d1vdca1         183 LDAEHYLQ  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.55  E-value=2.5e-14  Score=130.96  Aligned_cols=184  Identities=15%  Similarity=0.166  Sum_probs=109.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCccc------c-c-----chhh---------------h-hcCC-C
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVF------T-P-----LLAS---------------T-CVGT-L  158 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~------~-~-----ll~~---------------~-~~g~-~  158 (441)
                      ..+|+||||||||++||.++++.|. .|+|+|+.....+      . .     ++|.               . ..|. .
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~~   82 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEF   82 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCcc
Confidence            6799999999999999999999875 6888887532110      0 0     0000               0 0011 0


Q ss_pred             Cccccccchhhh---------------hhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEE
Q 013561          159 EFRSVAEPVSRI---------------QTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVI  223 (441)
Q Consensus       159 ~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~Lvl  223 (441)
                      ....+......+               ...+....++.++.+.......  ..+.......   ........++.|.+++
T Consensus        83 ~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~--~~~~~~~~~~---~~~~~~~~~~a~~v~i  157 (238)
T d1aoga1          83 DRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESK--NVVNVRESAD---PASAVKERLETEHILL  157 (238)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEET--TEEEEESSSS---TTSCEEEEEEBSCEEE
T ss_pred             cCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeecccc--cccccccccc---ccccccccccccceee
Confidence            111111011111               1123345678888776554443  2333332111   0112234678999999


Q ss_pred             cCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCC
Q 013561          224 AAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPS  303 (441)
Q Consensus       224 AtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~  303 (441)
                      ++|..|..+.  +...+...+..               .      ..++++-.              |+|.||++||| +
T Consensus       158 ~~~~~~~~~~--~~~~~~~~l~~---------------~------~~gv~~~~--------------G~I~vde~~~T-~  199 (238)
T d1aoga1         158 ASGSWPHMPN--GRSPRTKDLQL---------------Q------NAGVMIKN--------------GGVQVDEYSRT-N  199 (238)
T ss_dssp             CCCEEECCCC--CEEECCGGGCG---------------G------GTTCCEET--------------TEECCCTTCBC-S
T ss_pred             eccccccccc--ccccceeeecc---------------c------ccEEEEcC--------------CeEEecCCeee-c
Confidence            9999887653  22222211110               0      01122211              88999999999 9


Q ss_pred             CCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          304 VEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       304 ~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .|+|||+|||.      +   .+.+++.|+.||+.||++|.
T Consensus       200 ~~~iyAvGDv~------~---~~~l~~~A~~eg~~aa~~i~  231 (238)
T d1aoga1         200 VSNIYAIGDVT------N---RVMLTPVAINEAAALVDTVF  231 (238)
T ss_dssp             STTEEECGGGG------T---SCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEec------C---CccchhhHHHHHHHHHHHHc
Confidence            99999999998      3   36799999999999999997

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.1e-15  Score=134.99  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=70.0

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          105 KPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      +..++|||+|||||||||+||..|+++||+|||||+.+.++....+.....+   .+.....++.+...+. ..++++..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~---~~~~~~~~~~~~~~~~-~~gV~i~l  114 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG---KEEFYETLRYYRRMIE-VTGVTLKL  114 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTT---CTTHHHHHHHHHHHHH-HHTCEEEE
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcc---cchHHHHHHHHHHhhh-cCCeEEEe
Confidence            3455889999999999999999999999999999999988733222111212   2212222222222222 34666654


Q ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          185 ASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       185 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      ++.         |.  .           +....||+||+|||+.|+.+++||.+
T Consensus       115 ~~~---------Vt--~-----------~~~~~~d~vilAtG~~~~~~~~pg~~  146 (179)
T d1ps9a3         115 NHT---------VT--A-----------DQLQAFDETILASGIPNRALAQPLID  146 (179)
T ss_dssp             SCC---------CC--S-----------SSSCCSSEEEECCCEECCTTHHHHHT
T ss_pred             CCE---------Ec--c-----------cccccceeEEEeecCCCcccccchhc
Confidence            321         10  0           02458999999999999888777754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.4e-14  Score=131.47  Aligned_cols=173  Identities=15%  Similarity=0.144  Sum_probs=105.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccc----cchhhhh-----------------cCCCCc------c
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFT----PLLASTC-----------------VGTLEF------R  161 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~----~ll~~~~-----------------~g~~~~------~  161 (441)
                      ..+|+||||||||++||.++++.|.+|+|||++. ++-+    .+.|...                 .|....      .
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   80 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE   80 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence            3579999999999999999999999999999864 3210    1111100                 000000      0


Q ss_pred             cccc-------chhhhhhhhcCCCCEEEEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCC
Q 013561          162 SVAE-------PVSRIQTSLSSDPNSYFYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGI  234 (441)
Q Consensus       162 ~~~~-------~~~~~~~~~~~~~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~i  234 (441)
                      .+..       .+....+.+.+..++++........+.  ..+...            ...+.++.+++|||+.|..|.+
T Consensus        81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--~~~~~~------------~~~~~~~~~iiatG~~p~ip~i  146 (217)
T d1gesa1          81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEVN------------GETITADHILIATGGRPSHPRE  146 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEET------------TEEEEEEEEEECCCEEECCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--eeecCC------------CceeeeeeeeeecCccccCCCC
Confidence            0000       000001111223456555443322222  122111            1478899999999999999988


Q ss_pred             CCcccccccccCHhHHHHHHHHHHHhcccccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccc
Q 013561          235 KGVKENAYFLREVNHAQEIRKKLLLNLMLSENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCA  314 (441)
Q Consensus       235 pG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a  314 (441)
                      |+.+.-.     ++.         ..           +++.            +. |.|.+|+.++| +.|+|||+||+.
T Consensus       147 p~~~~l~-----l~~---------~g-----------v~~~------------~~-~~i~~d~~~~t-~~~~i~~iG~g~  187 (217)
T d1gesa1         147 PANDNIN-----LEA---------AG-----------VKTN------------EK-GYIVVDKYQNT-NIEGIYAVGDNT  187 (217)
T ss_dssp             ESCTTSC-----HHH---------HT-----------CCBC------------TT-SCBCCCTTSBC-SSTTEEECSGGG
T ss_pred             CCcCCcc-----ccc---------cc-----------EEEc------------CC-ccEeeCchhcc-CCCcEEEECCCc
Confidence            8763110     000         00           1111            11 78999999999 899999999999


Q ss_pred             cccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          315 GFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       315 ~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                               ..+.+++.|.++|+.+++++.
T Consensus       188 ---------~g~ela~~~~~~G~~v~~~~~  208 (217)
T d1gesa1         188 ---------GAVELTPVAVAAGRRLSERLF  208 (217)
T ss_dssp             ---------TSCCCHHHHHHHHHHHHHHHH
T ss_pred             ---------cHHHHHHHHHHHHHHHHHHHh
Confidence                     246799999999999998876

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.39  E-value=3e-13  Score=111.26  Aligned_cols=113  Identities=18%  Similarity=0.255  Sum_probs=80.5

Q ss_pred             chhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCcc
Q 013561           82 AERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFR  161 (441)
Q Consensus        82 ~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~  161 (441)
                      .++++++    +....+.+.       +++++|||||+.|+++|..|++.|.+||++++++++.           ...+.
T Consensus         6 ~~~v~~s----~~~l~l~~~-------p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-----------~~~d~   63 (119)
T d3lada2           6 QDVIVDS----TGALDFQNV-------PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-----------PAVDE   63 (119)
T ss_dssp             SSSEEEH----HHHTSCSSC-------CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-----------TTSCH
T ss_pred             CCEEEch----hHhhCcccC-------CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-----------Ccccc
Confidence            3456665    444555555       7899999999999999999999999999999998765           11223


Q ss_pred             ccccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          162 SVAEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      ++...+.+.   +. ..++.++.+ ++++++.+++.+++.....      ++++++.+|+|++|+|
T Consensus        64 ei~~~l~~~---l~-~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~------~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          64 QVAKEAQKI---LT-KQGLKILLGARVTGTEVKNKQVTVKFVDA------EGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHH---HH-HTTEEEEETCEEEEEEECSSCEEEEEESS------SEEEEEEESEEEECSC
T ss_pred             hhHHHHHHH---HH-hcCceeecCcEEEEEEEeCCEEEEEEEEC------CCCEEEECCEEEEeeC
Confidence            344444444   33 357877765 7899988777666554321      1235789999999998

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.38  E-value=2.1e-15  Score=130.79  Aligned_cols=82  Identities=6%  Similarity=0.052  Sum_probs=66.8

Q ss_pred             ccccCCCCCCCCCccccccccCCCcccCCCcccccc--cccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCC
Q 013561           27 IGIEGLPTNKCFSPSLENVSRNSSLSYLPSSIRMTT--HMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEAT  104 (441)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~grvcp~~--ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~  104 (441)
                      -|+.++.+|+ |.+|++++.++|+||++||||||++  ||.+|+++.....++.|+.+|||++|++.+   .+++....|
T Consensus        98 ~~i~~i~~g~-~~~A~~~i~~~NP~p~icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~~~~---~~~~~~~~P  173 (182)
T d1gtea1          98 SFITSISNKN-YYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKA---MNIPQIRNP  173 (182)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHH---HTCCCCCCT
T ss_pred             HHHHHHHcCC-HHHHHHHHhccCchHHHHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHHHHHH---cCCCCCCCC
Confidence            4999999999 9999999999999999999999985  999999975545578999999999998776   444444333


Q ss_pred             CCCCCCcE
Q 013561          105 KPGEKPRV  112 (441)
Q Consensus       105 ~~~~~k~V  112 (441)
                      ..++++||
T Consensus       174 ~~Pt~kKV  181 (182)
T d1gtea1         174 CLPSQEKM  181 (182)
T ss_dssp             TSCCGGGS
T ss_pred             CCCCCCCC
Confidence            44445554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.3e-12  Score=112.09  Aligned_cols=172  Identities=14%  Similarity=0.032  Sum_probs=98.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc--ccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-E
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM--VFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-S  186 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~--~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~  186 (441)
                      .+|+||||||+|++||..+++.|.+|+|||++..-  .......... +.... ........+.. ..+.....+... .
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~   78 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYI-SVPKT-EGQKLAGALKV-HVDEYDVDVIDSQS   78 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBT-TBSSE-EHHHHHHHHHH-HHHTSCEEEECSCC
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceecc-ccchh-hhHHHHHHHHH-Hhhheeceeeccce
Confidence            37999999999999999999999999999975311  0000000000 01000 00001111111 111223333322 2


Q ss_pred             EEEEeC---CCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhccc
Q 013561          187 CIGIDT---DKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLML  263 (441)
Q Consensus       187 v~~id~---~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~  263 (441)
                      +..+..   ..........         +..++..+.+++++|..+........                      .+. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~-  126 (184)
T d1fl2a1          79 ASKLIPAAVEGGLHQIETA---------SGAVLKARSIIVATGAKLPNTNWLEG----------------------AVE-  126 (184)
T ss_dssp             EEEEECCSSTTCCEEEEET---------TSCEEEEEEEEECCCEEEESCGGGTT----------------------TSC-
T ss_pred             eeeecccccccceeeeeee---------cceeeecccccccccccccccccccc----------------------ccc-
Confidence            333322   1112222221         12367899999999975432210000                      000 


Q ss_pred             ccCCCCceeEeeCceEEEEccCCcccCCceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 013561          264 SENPGDTVQLFSKYFVITITLSFLVRLSQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELF  343 (441)
Q Consensus       264 a~~~G~~~vE~a~~v~V~il~~~~~~lG~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI  343 (441)
                                             ....|.|.||..++| +.|+|||+|||...+        .+....|+.+|..+|.++
T Consensus       127 -----------------------~~~~g~i~v~~~~~t-~~~gv~a~gd~~~~~--------~~~~vva~g~G~~aA~~~  174 (184)
T d1fl2a1         127 -----------------------RNRMGEIIIDAKCET-NVKGVFAAGDCTTVP--------YKQIIIATGEGAKASLSA  174 (184)
T ss_dssp             -----------------------BCTTSCBCCCTTCBC-SSTTEEECSTTBSCS--------SCCHHHHHHHHHHHHHHH
T ss_pred             -----------------------ccccceeccCCceee-eCCCEEEEeeecCcc--------cCCcEEEEECcHHHHHHH
Confidence                                   001177999999999 999999999998431        246888999999999999


Q ss_pred             HHHhc
Q 013561          344 NKKIG  348 (441)
Q Consensus       344 ~~~l~  348 (441)
                      .++|.
T Consensus       175 ~~~l~  179 (184)
T d1fl2a1         175 FDYLI  179 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99986

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.36  E-value=3.2e-14  Score=130.89  Aligned_cols=43  Identities=12%  Similarity=0.113  Sum_probs=38.8

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc
Q 013561          104 TKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF  146 (441)
Q Consensus       104 ~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~  146 (441)
                      ++..++++|+|||||||||++|..|++.|++|+|||+++.++.
T Consensus        44 ~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          44 RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG   86 (233)
T ss_dssp             CCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCC
Confidence            3446689999999999999999999999999999999998863

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.36  E-value=4.9e-13  Score=110.91  Aligned_cols=116  Identities=12%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             cchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCc
Q 013561           81 NAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEF  160 (441)
Q Consensus        81 ~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~  160 (441)
                      ..++++++    .....+.+.       +++++|||||+.|+++|..|++.|.+||++|+.+++.  +        . .+
T Consensus         9 ~~~~i~ts----~~~l~l~~~-------p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il--~--------~-~d   66 (125)
T d1ojta2           9 EDPRIIDS----SGALALKEV-------PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM--Q--------G-AD   66 (125)
T ss_dssp             CCTTEECH----HHHTTCCCC-------CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS--T--------T-SC
T ss_pred             CCCcEEcH----HHhhCcccc-------CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc--c--------c-ch
Confidence            45666665    334555555       6799999999999999999999999999999998765  1        1 22


Q ss_pred             cccccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          161 RSVAEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                      .++...+.+.   +. ..++.+..+ ++.++..+.+.+.+.....+     ++.+++++|+|++|+|+
T Consensus        67 ~~~~~~l~~~---l~-~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~-----g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          67 RDLVKVWQKQ---NE-YRFDNIMVNTKTVAVEPKEDGVYVTFEGAN-----APKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             HHHHHHHHHH---HG-GGEEEEECSCEEEEEEEETTEEEEEEESSS-----CCSSCEEESCEEECCCE
T ss_pred             hhHHHHHHHH---HH-HcCcccccCcEEEEEEEcCCcEEEEEEeCC-----CCeEEEEcCEEEEecCC
Confidence            2333344443   33 356766554 78888776665554432111     22347899999999994

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=4.1e-13  Score=109.70  Aligned_cols=94  Identities=18%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||||++|+++|..|++.|++|||+|+.+++.  +        ..+ .++...+.+.   +. ..+++++.+ +|
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il--~--------~~d-~~~~~~l~~~---l~-~~gV~i~~~~~V   85 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL--P--------TYD-SELTAPVAES---LK-KLGIALHLGHSV   85 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS--T--------TSC-HHHHHHHHHH---HH-HHTCEEETTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc--c--------ccc-chhHHHHHHH---HH-hhcceEEcCcEE
Confidence            6799999999999999999999999999999999765  1        112 2233333333   22 246776655 68


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      .+++.  +........       +++.++++|.|++|+|
T Consensus        86 ~~i~~--~~~~~~~~~-------~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          86 EGYEN--GCLLANDGK-------GGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEET--TEEEEECSS-------SCCCEECCSCEEECCC
T ss_pred             EEEcC--CeEEEEEcC-------CCeEEEEcCEEEEecC
Confidence            88863  333333322       2235799999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.32  E-value=1.6e-12  Score=106.38  Aligned_cols=112  Identities=12%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             cchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCc
Q 013561           81 NAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEF  160 (441)
Q Consensus        81 ~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~  160 (441)
                      ..++++++    +....+.+.       +++|+|||||++|+++|..|++.|.+|||+|+.+++.  +        .. +
T Consensus         5 ~~~~i~~s----~~~l~~~~~-------p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il--~--------~~-d   62 (117)
T d1ebda2           5 FSNRILDS----TGALNLGEV-------PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL--S--------GF-E   62 (117)
T ss_dssp             CCSSEECH----HHHHTCSSC-------CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS--T--------TS-C
T ss_pred             CCCCEECh----hHhhChhhc-------CCeEEEECCCccceeeeeeecccccEEEEEEecceec--c--------cc-c
Confidence            34566665    333444444       6799999999999999999999999999999999765  1        11 2


Q ss_pred             cccccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEc
Q 013561          161 RSVAEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIA  224 (441)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlA  224 (441)
                      .++...+.+.   +.+ .+++++.+ .+++++...+.+.+....+      +++.++++|.|+|.
T Consensus        63 ~~~~~~l~~~---l~~-~GI~i~~~~~v~~i~~~~~~~~v~~~~~------g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKR---LKK-KGVEVVTNALAKGAEEREDGVTVTYEAN------GETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHH---HHH-TTCEEEESEEEEEEEEETTEEEEEEEET------TEEEEEEESEEEEC
T ss_pred             chhHHHHHHH---HHh-cCCEEEcCCEEEEEEEcCCEEEEEEEeC------CCEEEEEeEEEEEC
Confidence            2233334433   333 46776655 7888987666655544221      23457899999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=7.4e-13  Score=117.43  Aligned_cols=167  Identities=19%  Similarity=0.147  Sum_probs=94.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v  187 (441)
                      ++||+||||||+||++|..|++.|+ +|+|||+++...  +..   ................... ........+.....
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g--g~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   77 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG--GLS---TSEIPQFRLPYDVVNFEIE-LMKDLGVKIICGKS   77 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS--THH---HHTSCTTTSCHHHHHHHHH-HHHTTTCEEEESCC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc--chh---hhhccccccccccccchhh-hhhccceeEEeeEE
Confidence            6899999999999999999999998 599999998765  221   1111111111110111111 11112333322211


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcccccccccCHhHHHHHHHHHHHhcccccCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVKENAYFLREVNHAQEIRKKLLLNLMLSENP  267 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~~~~a~~~  267 (441)
                        +....  ....           +..+..+|.+++|+|...... ++...                 .   .....   
T Consensus        78 --v~~~~--~~~~-----------~~~~~~~~~~~ia~g~~~~~~-~~~~~-----------------~---~~~~~---  118 (196)
T d1gtea4          78 --LSENE--ITLN-----------TLKEEGYKAAFIGIGLPEVLR-DPKVK-----------------E---ALSPI---  118 (196)
T ss_dssp             --BSTTS--BCHH-----------HHHHTTCCEEEECCCCCEECC-CHHHH-----------------H---HTTTS---
T ss_pred             --eccce--eeee-----------hhhccccceeeEEeccccCCc-ccccc-----------------c---ccccc---
Confidence              11100  0000           112457999999999754321 11110                 0   00000   


Q ss_pred             CCceeEeeCceEEEEccCCcccCCceeeC-CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013561          268 GDTVQLFSKYFVITITLSFLVRLSQIGVD-EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKK  346 (441)
Q Consensus       268 G~~~vE~a~~v~V~il~~~~~~lG~I~Vd-~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~  346 (441)
                      +                 +... +....+ ..+++ +.|.||+.||++      |   .+.++..|..+|+.+|..+.++
T Consensus       119 ~-----------------~~~~-~~~~~~~~~~~~-~~~~v~~~g~vi------g---g~~~av~a~~~g~~~a~~v~r~  170 (196)
T d1gtea4         119 K-----------------FNRW-DLPEVDPETMQT-SEPWVFAGGDIV------G---MANTTVESVNDGKQASWYIHKY  170 (196)
T ss_dssp             C-----------------BCTT-SSBCCCTTTCBC-SSTTEEECSGGG------C---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             c-----------------cccc-cceeccccccCC-Cccccccccccc------C---CcchHHHHHHHHhhhehhHhhc
Confidence            0                 0000 223333 46888 899999999998      2   2468899999999999999887


Q ss_pred             hc
Q 013561          347 IG  348 (441)
Q Consensus       347 l~  348 (441)
                      +.
T Consensus       171 ~~  172 (196)
T d1gtea4         171 IQ  172 (196)
T ss_dssp             HH
T ss_pred             cH
Confidence            76

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.27  E-value=4.2e-12  Score=118.40  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      .|||+|||||+|||+||.+|++.|++|+|+|+++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            378999999999999999999999999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=2e-12  Score=105.71  Aligned_cols=94  Identities=14%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      ++||+|||||++|+++|..|++.|++|||+|+.+++.  +        ..+ .++...+.+.   +. ..++.++.+ .+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l--~--------~~d-~~~~~~~~~~---l~-~~GV~~~~~~~v   85 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL--P--------SFD-PMISETLVEV---MN-AEGPQLHTNAIP   85 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T--------TSC-HHHHHHHHHH---HH-HHSCEEECSCCE
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh--h--------hcc-hhhHHHHHHH---HH-HCCCEEEeCCEE
Confidence            6799999999999999999999999999999998765  1        111 2233333333   22 246777665 67


Q ss_pred             EEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      ..+....+ .+.+...++         .++++|.||+|+|
T Consensus        86 ~~i~~~~~~~~~v~~~~g---------~~~~~D~vi~a~G  116 (116)
T d1gesa2          86 KAVVKNTDGSLTLELEDG---------RSETVDCLIWAIG  116 (116)
T ss_dssp             EEEEECTTSCEEEEETTS---------CEEEESEEEECSC
T ss_pred             EEEEEcCCcEEEEEECCC---------CEEEcCEEEEecC
Confidence            77765433 344443211         3789999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.4e-12  Score=104.01  Aligned_cols=101  Identities=11%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+||++++++++.  +        . .+.++...+.+.   +. ..+++++.+ .+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l--~--------~-~d~~~~~~~~~~---l~-~~Gv~i~~~~~v   86 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL--R--------S-FDSMISTNCTEE---LE-NAGVEVLKFSQV   86 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--T--------T-SCHHHHHHHHHH---HH-HTTCEEETTEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc--c--------c-hhhHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence            6799999999999999999999999999999998765  1        1 122233334333   33 356776654 78


Q ss_pred             EEEeCCCCEEEEEe--cCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKHEVYCET--VNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~~v~~~~--~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      ++|+...+.+.+..  ...+  ........+++|+|++|+|
T Consensus        87 ~~i~~~~~g~~v~~~~~~~g--~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          87 KEVKKTLSGLEVSMVTAVPG--RLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEEEEETTEEEEEEEECCTT--SCCEEEEEEEESEEEECSC
T ss_pred             EEEEEcCCeEEEEEEEccCC--cCcCccccccCCEEEEEeC
Confidence            88876666554432  2111  0111123568999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=2.2e-11  Score=112.72  Aligned_cols=37  Identities=5%  Similarity=0.032  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      ..+|+|||||+||+.||..|++.|++|+|||+++.++
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIG   40 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            4689999999999999999999999999999987653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=3.4e-11  Score=99.08  Aligned_cols=97  Identities=14%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||||+.|+++|..|++.|.+|||+|+++++.  |        . .+.++...+.+.   +.+ .+++++.+ ++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l--~--------~-~d~ei~~~l~~~---l~~-~GV~i~~~~~v   87 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG--A--------S-MDGEVAKATQKF---LKK-QGLDFKLSTKV   87 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--S--------S-SCHHHHHHHHHH---HHH-TTCEEECSEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc--h--------h-hhhhhHHHHHHH---HHh-ccceEEeCCEE
Confidence            6799999999999999999999999999999999765  1        1 222344444443   333 46776654 67


Q ss_pred             EEEeCC--CCEEEEEecCCCCCCCCCCcceeeCCEEEEc
Q 013561          188 IGIDTD--KHEVYCETVNNGKLSHEPHQFKVAYDKLVIA  224 (441)
Q Consensus       188 ~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlA  224 (441)
                      ++++..  ...+.+...+..    .++..++++|+|++|
T Consensus        88 ~~v~~~~~~~~v~~~~~~~~----~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          88 ISAKRNDDKNVVEIVVEDTK----TNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEEETT----TTEEEEEEESEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEeCC----CCCeEEEEeCEEEEC
Confidence            777653  334443322110    123457899999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.18  E-value=1.2e-11  Score=101.00  Aligned_cols=95  Identities=11%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhc---cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGID---TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~---~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++++|||||++|+++|..|+   +.|.+|+++++.+++.  +        . .+.++...+.+.   +. ..++.++.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--~--------~-~d~~~~~~~~~~---l~-~~GI~v~~~   82 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--R--------G-FDSELRKQLTEQ---LR-ANGINVRTH   82 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--T--------T-SCHHHHHHHHHH---HH-HTTEEEEET
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--c--------c-ccchhhHHHHHH---Hh-hCcEEEEcC
Confidence            679999999999999997654   5689999999998765  1        1 112233333333   33 357887765


Q ss_pred             -EEEEEeCCCC-EEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          186 -SCIGIDTDKH-EVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       186 -~v~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                       .+++|+...+ ...+...+ +        .++++|.||+|+|+
T Consensus        83 ~~v~~i~~~~~g~~~v~~~~-g--------~~i~~D~Vi~a~GR  117 (117)
T d1feca2          83 ENPAKVTKNADGTRHVVFES-G--------AEADYDVVMLAIGR  117 (117)
T ss_dssp             CCEEEEEECTTSCEEEEETT-S--------CEEEESEEEECSCE
T ss_pred             CEEEEEEECCCCEEEEEECC-C--------CEEEcCEEEEecCC
Confidence             6888875433 22233221 1        37899999999994

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.17  E-value=6.1e-12  Score=117.14  Aligned_cols=33  Identities=12%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+||||||||++||.++++.|.+|+|||+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999999999999999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.16  E-value=1.8e-11  Score=100.89  Aligned_cols=110  Identities=20%  Similarity=0.302  Sum_probs=74.0

Q ss_pred             hhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCcccc
Q 013561           84 RIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSV  163 (441)
Q Consensus        84 ~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~  163 (441)
                      +++++    .....+.+.       +++++|||||+.|+++|..|++.|.+|||+++.+++.  +        ..+ .++
T Consensus        11 ~v~ts----~~~l~l~~~-------p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l--~--------~~d-~~~   68 (123)
T d1dxla2          11 KIVSS----TGALALSEI-------PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV--P--------TMD-AEI   68 (123)
T ss_dssp             SEECH----HHHTTCSSC-------CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS--T--------TSC-HHH
T ss_pred             eEEeH----HHhhCcccc-------CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC--c--------hhh-hcc
Confidence            46665    334455554       6799999999999999999999999999999999765  1        112 223


Q ss_pred             ccchhhhhhhhcCCCCEEEEEE-EEEEEeCCCCEEE--EEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          164 AEPVSRIQTSLSSDPNSYFYLA-SCIGIDTDKHEVY--CETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       164 ~~~~~~~~~~~~~~~~v~~~~~-~v~~id~~~~~v~--~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                      ...+.+.   +.+ .++.++.+ .+.+|+..++.++  +...++      +++..+++|+|++|.
T Consensus        69 ~~~l~~~---l~~-~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~------g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          69 RKQFQRS---LEK-QGMKFKLKTKVVGVDTSGDGVKLTVEPSAG------GEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHH---HHH-SSCCEECSEEEEEEECSSSSEEEEEEESSS------CCCEEEEESEEECCC
T ss_pred             hhhhhhh---hhc-ccceEEcCCceEEEEEccCeEEEEEEECCC------CeEEEEEcCEEEEcC
Confidence            3333333   333 46776654 7888987655544  443222      234568999999983

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=4.4e-12  Score=115.72  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-------CeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-------YDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSY  181 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-------~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~  181 (441)
                      +.||+|||||||||+||.+|++.|       ++|||||+.+.++  +++   ..+.+.+......+.+....+....++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G--G~~---~~gi~p~~~~~~~~~~~~~~~~~~~g~~   76 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW--GLV---RSGVAPDHPKIKSISKQFEKTAEDPRFR   76 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS--THH---HHTSCTTCTGGGGGHHHHHHHHTSTTEE
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC--Cee---eeccCcccccchhhhhhhhhhhccCCce
Confidence            469999999999999999998876       5899999999876  333   2233222212222222222234456777


Q ss_pred             EEEEEEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCcCCCCCCCcc
Q 013561          182 FYLASCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEPLTFGIKGVK  238 (441)
Q Consensus       182 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p~~~~ipG~~  238 (441)
                      +..+...+     ..+.+            ++....||++++|||+.+..+.++|..
T Consensus        77 ~~~~~~v~-----~~~~~------------~~~~~~~~~v~~atGa~~~~~~~~g~~  116 (239)
T d1lqta2          77 FFGNVVVG-----EHVQP------------GELSERYDAVIYAVGAQSRGVPTPGLP  116 (239)
T ss_dssp             EEESCCBT-----TTBCH------------HHHHHHSSEEEECCCCCEECCCCTTSC
T ss_pred             EEEEEEec-----cccch------------hhhhccccceeeecCCCcccccccccc
Confidence            76653211     10111            112357999999999987777666653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.14  E-value=6.4e-11  Score=97.27  Aligned_cols=91  Identities=15%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||||++|+++|..|++.|.+||++|+.++++.          ...++.+...+.+.   +. ..+++++.+ .+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~----------~~~~~~~~~~~~~~---l~-~~GV~i~~~~~v   95 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS----------RAAPATLADFVARY---HA-AQGVDLRFERSV   95 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT----------TTSCHHHHHHHHHH---HH-TTTCEEEESCCE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc----------ccCCHHHHHHHHHH---HH-HCCcEEEeCCEE
Confidence            57999999999999999999999999999999997651          11122233333333   33 457877655 67


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      .++..  ..+.++++           .++++|.||+|+|
T Consensus        96 ~~~~~--~~v~l~dg-----------~~i~~D~vi~a~G  121 (121)
T d1d7ya2          96 TGSVD--GVVLLDDG-----------TRIAADMVVVGIG  121 (121)
T ss_dssp             EEEET--TEEEETTS-----------CEEECSEEEECSC
T ss_pred             EEEeC--CEEEECCC-----------CEEECCEEEEeeC
Confidence            77654  45655542           3799999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=7.4e-11  Score=97.04  Aligned_cols=98  Identities=9%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++++|||||++|+++|..|++.|.+|||++++ +..  +        . .++++...+.+.   + +..+++|+.+ .+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l--~--------~-~D~~~~~~l~~~---l-~~~Gv~i~~~~~v   83 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--R--------G-FDQDMANKIGEH---M-EEHGIKFIRQFVP   83 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSS--T--------T-SCHHHHHHHHHH---H-HHTTEEEEESCEE
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhh--c--------c-CCHHHHHHHHHH---H-HHCCCEEEECCEE
Confidence            679999999999999999999999999999875 332  1        1 122333334333   2 3357888765 56


Q ss_pred             EEEeC----CCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDT----DKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~----~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      +.+..    ....+.+.....+    .++....+||.|++|+|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          84 TKIEQIEAGTPGRLKVTAKSTN----SEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEEECSTTCEEEEEEECTT----SCEEEEEEESEEECCCC
T ss_pred             EEEEEecCCCccEEEEEEEECC----CCcEEEEECCEEEEEeC
Confidence            66542    2233443332111    12234568999999998

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.09  E-value=3.3e-10  Score=102.60  Aligned_cols=44  Identities=23%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             CCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          297 EWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       297 ~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      +.+++ +.++||++||++..       ..|.+++.|+.+|+.+|+.|.+.++
T Consensus       300 ~~~~~-~~~~v~~~GD~~~~-------~~~~~~~gA~~sG~~aA~~l~~~~~  343 (347)
T d1b5qa1         300 DQLRA-PVGRVYFTGEHTSE-------HYNGYVHGAYLSGIDSAEILINCAQ  343 (347)
T ss_dssp             HHHHC-CBTTEEECSGGGCS-------SCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccc-ccCCEEEEEccccC-------cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35667 78999999999842       3577899999999999999999886

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.08  E-value=6.3e-11  Score=98.98  Aligned_cols=96  Identities=11%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|.+|||+|+.++++-          ...++.+...+.+.   + +..++.++.+ .+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~----------~~~~~~~~~~~~~~---~-~~~GV~i~~~~~v  100 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE----------RVTAPPVSAFYEHL---H-REAGVDIRTGTQV  100 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT----------TTSCHHHHHHHHHH---H-HHHTCEEECSCCE
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc----------cccchhhhhhhhhc---c-cccccEEEeCCeE
Confidence            67999999999999999999999999999999997641          11122222223332   2 2346777655 67


Q ss_pred             EEEeCCC--CEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDK--HEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~--~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      ..++...  ..+.....+++        .++++|.||+|+|
T Consensus       101 ~~i~~~~~~~~v~~v~~~~G--------~~i~~D~vi~a~G  133 (133)
T d1q1ra2         101 CGFEMSTDQQKVTAVLCEDG--------TRLPADLVIAGIG  133 (133)
T ss_dssp             EEEEECTTTCCEEEEEETTS--------CEEECSEEEECCC
T ss_pred             EEEEEeCCCceEEEEECCCC--------CEEECCEEEEeeC
Confidence            7776532  22321111111        3799999999998

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.08  E-value=5.3e-10  Score=102.43  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+.+|..|++.|++|+|||+++.+
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            468999999999999999999999999999998754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=1.8e-11  Score=111.51  Aligned_cols=105  Identities=18%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             CcEEEECCCHHHHHHHHhhcc--CCCeEEEEcCCCCcccccchhhhhcCCCCccccccch-hhhhhhhcCCCCEEEEEEE
Q 013561          110 PRVVVLGTGWGACRFLKGIDT--KIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPV-SRIQTSLSSDPNSYFYLAS  186 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~--~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~  186 (441)
                      +||+|||||||||+||.+|++  .|++|||||+.++++  +++   ..+..........+ ..... .....++.+..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g--G~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   75 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF--GLV---RFGVAPDHPEVKNVINTFTQ-TARSDRCAFYGNV   75 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC--THH---HHTSCTTCGGGGGHHHHHHH-HHTSTTEEEEBSC
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC--cee---hhhccccccccccchhhhhh-hhhcCCeeEEeeE
Confidence            389999999999999999975  589999999998765  222   11222211111112 22211 2334566665443


Q ss_pred             EEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCCCc-CCCCCCCc
Q 013561          187 CIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGAEP-LTFGIKGV  237 (441)
Q Consensus       187 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p-~~~~ipG~  237 (441)
                      .++.|     +...            +....||+|++|||+.+ +.+.+++.
T Consensus        76 ~v~~~-----~~~~------------~l~~~~d~v~~a~Ga~~~~~~~~~~~  110 (230)
T d1cjca2          76 EVGRD-----VTVQ------------ELQDAYHAVVLSYGAEDKSRPIDPSV  110 (230)
T ss_dssp             CBTTT-----BCHH------------HHHHHSSEEEECCCCCEECCCCCTTS
T ss_pred             EeCcc-----ccHH------------HHHhhhceEEEEeecccccccccccc
Confidence            22111     1111            11236999999999975 34455654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.07  E-value=1.4e-10  Score=111.59  Aligned_cols=39  Identities=10%  Similarity=0.073  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCCcc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNHMV  145 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~~~  145 (441)
                      ++.|||+|||||++||++|..|.+.|  ++|+|||+++.++
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   42 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            34689999999999999999997755  6999999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.02  E-value=3.5e-10  Score=92.13  Aligned_cols=93  Identities=12%  Similarity=0.155  Sum_probs=63.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      ++||+|||||+.|+++|..|++.|.+|||+++.+++.  +        . .+.++...+.+.   +. ..++.++.+ .+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il--~--------~-~d~~~~~~~~~~---l~-~~gV~i~~~~~v   86 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--R--------K-FDESVINVLEND---MK-KNNINIVTFADV   86 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--T--------T-SCHHHHHHHHHH---HH-HTTCEEECSCCE
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc--c--------c-ccHHHHHHHHHH---HH-hCCCEEEECCEE
Confidence            5799999999999999999999999999999998765  1        1 122333333333   33 357777755 68


Q ss_pred             EEEeCC-CCEEEEEecCCCCCCCCCCccee-eCCEEEEcC
Q 013561          188 IGIDTD-KHEVYCETVNNGKLSHEPHQFKV-AYDKLVIAA  225 (441)
Q Consensus       188 ~~id~~-~~~v~~~~~~~~~~~~~~~~~~i-~yD~LvlAt  225 (441)
                      ++++.. ++.+.+...++         ..+ .||.||+|.
T Consensus        87 ~~i~~~~~~~~~v~~~~G---------~~~~~~D~Vi~AI  117 (117)
T d1onfa2          87 VEIKKVSDKNLSIHLSDG---------RIYEHFDHVIYCV  117 (117)
T ss_dssp             EEEEESSTTCEEEEETTS---------CEEEEESEEEECC
T ss_pred             EEEEEcCCCeEEEEECCC---------CEEEeCCEEEEeC
Confidence            888643 33444443221         133 689999985

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.02  E-value=4e-10  Score=92.67  Aligned_cols=92  Identities=12%  Similarity=0.056  Sum_probs=64.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      .++|+|||||++|+++|..|++.|++|||||+.+++.-          ...+.++...+.+.   +. ..+++++.+ .+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~----------~~~d~~~~~~~~~~---l~-~~gv~~~~~~~v   95 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG----------VYLDKEFTDVLTEE---ME-ANNITIATGETV   95 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT----------TTCCHHHHHHHHHH---HH-TTTEEEEESCCE
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc----------cccchhhHHHHHHH---hh-cCCeEEEeCceE
Confidence            67999999999999999999999999999999986641          11112233333333   33 457887766 78


Q ss_pred             EEEeCCCCE-EEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          188 IGIDTDKHE-VYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       188 ~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                      .+++.+.+. ..+.++           .++++|.||+|.
T Consensus        96 ~~i~~~~~~~~v~~dg-----------~~i~~D~vi~aI  123 (123)
T d1nhpa2          96 ERYEGDGRVQKVVTDK-----------NAYDADLVVVAV  123 (123)
T ss_dssp             EEEECSSBCCEEEESS-----------CEEECSEEEECS
T ss_pred             EEEEcCCCEEEEEeCC-----------CEEECCEEEEEC
Confidence            888765432 223331           379999999985

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.00  E-value=7.9e-10  Score=89.97  Aligned_cols=93  Identities=12%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhc---cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGID---TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA  185 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~---~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (441)
                      +++++|||||+.|+++|..|+   +.+.+|||||+.+++.  +        . .+.++...+.+.   +. ..+++++.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--~--------~-~d~~~~~~l~~~---l~-~~GV~v~~~   84 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--R--------G-FDHTLREELTKQ---LT-ANGIQILTK   84 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--T--------T-SCHHHHHHHHHH---HH-HTTCEEEES
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--c--------c-cchHHHHHHHHH---HH-hcCcEEEcC
Confidence            679999999999999996554   5667899999998665  1        1 122333334443   33 357887766


Q ss_pred             -EEEEEeCCC-CEEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          186 -SCIGIDTDK-HEVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       186 -~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                       .+.+++... +.+.+...++         .++++|.|++|.
T Consensus        85 ~~v~~ie~~~~~~~~v~~~~G---------~~i~~D~Vi~AI  117 (117)
T d1aoga2          85 ENPAKVELNADGSKSVTFESG---------KKMDFDLVMMAI  117 (117)
T ss_dssp             CCEEEEEECTTSCEEEEETTS---------CEEEESEEEECS
T ss_pred             CEEEEEEEcCCCeEEEEECCC---------cEEEeCEEEEeC
Confidence             788887543 3344333211         378999999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.00  E-value=4.3e-10  Score=91.97  Aligned_cols=97  Identities=11%  Similarity=0.080  Sum_probs=64.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||+.|+++|..|++.|.+|++|++.+.+.  +        . .+..+...+.+.   +. ..++.++.+ .+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l--~--------~-~d~~~~~~~~~~---l~-~~gI~v~~~~~v   86 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--L--------I-KDNETRAYVLDR---MK-EQGMEIISGSNV   86 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--T--------C-CSHHHHHHHHHH---HH-HTTCEEESSCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh--c--------c-cccchhhhhhhh---hh-ccccEEEcCCEE
Confidence            5799999999999999999999999999999998654  1        1 112222333333   32 346776654 78


Q ss_pred             EEEeCCCC--EEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKH--EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~--~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      +.++.+.+  ...+....      .+++.++++|+||+|+|
T Consensus        87 ~~i~~~~~~~~~~~~~~~------~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          87 TRIEEDANGRVQAVVAMT------PNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEECTTSBEEEEEEEE------TTEEEEEECSCEEECCC
T ss_pred             EEEEecCCceEEEEEEEe------CCCCEEEEcCEEEEEEC
Confidence            78876542  22221111      11235799999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=5.8e-10  Score=91.50  Aligned_cols=89  Identities=12%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-EE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-SC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v  187 (441)
                      +++|+|||||++|+++|..|++.|++|||+|+.+++.  +         .+ .++...+.+.   +. ..++.++.+ .+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~--~---------~d-~~~~~~~~~~---l~-~~GV~~~~~~~v   95 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--G---------LD-EELSNMIKDM---LE-ETGVKFFLNSEL   95 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--T---------CC-HHHHHHHHHH---HH-HTTEEEECSCCE
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccccc--C---------CC-HHHHHHHHHH---HH-HCCcEEEeCCEE
Confidence            5799999999999999999999999999999988654  1         11 1222333333   33 357888765 67


Q ss_pred             EEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCCC
Q 013561          188 IGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       188 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtGs  227 (441)
                      .+++.  +.+ +.+.           ..+++|.+|+|+|.
T Consensus        96 ~~~~~--~~v-~~~~-----------~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          96 LEANE--EGV-LTNS-----------GFIEGKVKICAIGI  121 (122)
T ss_dssp             EEECS--SEE-EETT-----------EEEECSCEEEECCE
T ss_pred             EEEeC--CEE-EeCC-----------CEEECCEEEEEEEe
Confidence            77754  333 2221           37899999999994

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.2e-09  Score=91.42  Aligned_cols=95  Identities=9%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhc----cCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGID----TKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL  184 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~----~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (441)
                      .++++|||||++|+++|..|+    ..|.+||+++++++..-          ...++++...+.+.   +. ..+++++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~----------~~~~~~~~~~~~~~---l~-~~GV~~~~  102 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG----------KILPEYLSNWTMEK---VR-REGVKVMP  102 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT----------TTSCHHHHHHHHHH---HH-TTTCEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc----------ccCCHHHHHHHHHH---HH-hCCcEEEe
Confidence            569999999999999998885    36899999999987641          11122222223332   33 45788776


Q ss_pred             E-EEEEEeCCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          185 A-SCIGIDTDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       185 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      + .+.+++.+++.+.+...++         .++++|.||+|+|
T Consensus       103 ~~~V~~i~~~~~~~~v~l~~G---------~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         103 NAIVQSVGVSSGKLLIKLKDG---------RKVETDHIVAAVG  136 (137)
T ss_dssp             SCCEEEEEEETTEEEEEETTS---------CEEEESEEEECCC
T ss_pred             CCEEEEEEecCCEEEEEECCC---------CEEECCEEEEeec
Confidence            5 7888887777666655321         3799999999999

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.83  E-value=9.7e-10  Score=104.25  Aligned_cols=120  Identities=11%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccch---hhhhc-------------------CC----CCccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLL---ASTCV-------------------GT----LEFRS  162 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll---~~~~~-------------------g~----~~~~~  162 (441)
                      ..+|+|||||++||.+|..|.+.|.+|+|||+.+.++-.-..   ++...                   ..    +..++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e   86 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   86 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence            568999999999999999999999999999998766411000   00000                   00    00011


Q ss_pred             cccchhhhhhhhcCCCCEEEEEEEEEEEe--CCCCEEEEEecCCCCCCCCCCcceeeCCEEEEcCC--CCcCCCCCCCcc
Q 013561          163 VAEPVSRIQTSLSSDPNSYFYLASCIGID--TDKHEVYCETVNNGKLSHEPHQFKVAYDKLVIAAG--AEPLTFGIKGVK  238 (441)
Q Consensus       163 ~~~~~~~~~~~~~~~~~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG--s~p~~~~ipG~~  238 (441)
                      +...++...+.+.-...+.| +.+|+++.  .+.+..++...+.         .+..+|+||+|||  +.|..|.+|+.+
T Consensus        87 ~~~Yl~~~a~~~~L~~~I~f-~t~V~~~~~de~~~~W~V~~~~~---------~~~~~~~~i~atG~ls~~~~p~~~~~~  156 (298)
T d1w4xa1          87 ILRYINFVADKFDLRSGITF-HTTVTAAAFDEATNTWTVDTNHG---------DRIRARYLIMASGQLSDALTGALFKID  156 (298)
T ss_dssp             HHHHHHHHHHHTTGGGGEEC-SCCEEEEEEETTTTEEEEEETTC---------CEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred             HHHHHHHHHHHcCCcccccC-CcEEEEEEEecCCCceeeccccc---------cccccceEEEeecccccccCCcccccc
Confidence            11122222222211123444 45787775  4556666665322         3788999999999  567777777763

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=2.8e-08  Score=89.74  Aligned_cols=112  Identities=15%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC-Ccccccchhhh---hcCCC----Cccc-cccchh-hhhhhhcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN-HMVFTPLLAST---CVGTL----EFRS-VAEPVS-RIQTSLSSDP  178 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~-~~~~~~ll~~~---~~g~~----~~~~-~~~~~~-~~~~~~~~~~  178 (441)
                      ..+|+||||||||++||..+++.|.++.||+.+- ......+-+..   ..|.+    +.+. ....++ ...+.+....
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            3589999999999999999999999999999863 22111110000   00000    0000 000011 1122244567


Q ss_pred             CEEEEEEEEEEEeCCCCEEE-EEecCCCCCCCCCCcceeeCCEEEEcCCCCc
Q 013561          179 NSYFYLASCIGIDTDKHEVY-CETVNNGKLSHEPHQFKVAYDKLVIAAGAEP  229 (441)
Q Consensus       179 ~v~~~~~~v~~id~~~~~v~-~~~~~~~~~~~~~~~~~i~yD~LvlAtGs~p  229 (441)
                      +..+++++|+++..+++.+. +...+ +        .++.++.|||+||.--
T Consensus        82 nL~i~q~~V~dli~e~~~v~gV~t~~-G--------~~~~AkaVILtTGTFL  124 (230)
T d2cula1          82 PLHLFQATATGLLLEGNRVVGVRTWE-G--------PPARGEKVVLAVGSFL  124 (230)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETT-S--------CCEECSEEEECCTTCS
T ss_pred             CHHHHhccceeeEecccceeeEEecc-c--------cEEEEeEEEEccCcce
Confidence            89999999999887777654 33321 1        3789999999999743

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.56  E-value=9.7e-08  Score=87.24  Aligned_cols=35  Identities=11%  Similarity=0.039  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+||+||||||+|+++|..|++.|++|+|||+++.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            67999999999999999999999999999999764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.52  E-value=2.5e-08  Score=93.72  Aligned_cols=39  Identities=10%  Similarity=0.086  Sum_probs=36.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .++|||+|||||++||+||..|++.|++|+|||++++++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            447899999999999999999999999999999998765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.52  E-value=5e-07  Score=85.57  Aligned_cols=35  Identities=11%  Similarity=0.108  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|++|+++|..|++.|++|+|+|+.+.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34899999999999999999999999999999764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.52  E-value=1.8e-06  Score=81.83  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .+|+|||||+|||++|..+++.|.+|+|||+.+.
T Consensus         6 ~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~   39 (336)
T d2bs2a2           6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (336)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            4799999999999999999999999999999753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.50  E-value=1.7e-07  Score=79.40  Aligned_cols=102  Identities=16%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             CCcEEEE--CCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEEE-
Q 013561          109 KPRVVVL--GTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYLA-  185 (441)
Q Consensus       109 ~k~VvII--GgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  185 (441)
                      +++|+|+  |||+.|+++|..|++.|++|||+++.+.+...     .     +. .....+.+.   +.+ .++.++.+ 
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-----~-----~~-~~~~~~~~~---l~~-~GV~i~~~~  103 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-----H-----FT-LEYPNMMRR---LHE-LHVEELGDH  103 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-----H-----HT-TCHHHHHHH---HHH-TTCEEEETE
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-----c-----ch-hHHHHHHHH---Hhh-ccceEEecc
Confidence            4466666  99999999999999999999999998865411     1     11 112222222   333 46776665 


Q ss_pred             EEEEEeCCCCEEEEEecCCCCC------------CCCCCcceeeCCEEEEcCCC
Q 013561          186 SCIGIDTDKHEVYCETVNNGKL------------SHEPHQFKVAYDKLVIAAGA  227 (441)
Q Consensus       186 ~v~~id~~~~~v~~~~~~~~~~------------~~~~~~~~i~yD~LvlAtGs  227 (441)
                      .+.+|+.+  .+.+.+......            ....+...+++|.+++++|.
T Consensus       104 ~v~~i~~~--~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtgR  155 (156)
T d1djqa2         104 FCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR  155 (156)
T ss_dssp             EEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCE
T ss_pred             EEEEecCc--ceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEecC
Confidence            78888754  455544321100            01123345678888888874

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.4e-08  Score=90.41  Aligned_cols=37  Identities=14%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .+||||||||++||+||..|++.|++|+|+|++++++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG   41 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            5689999999999999999999999999999999876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=1.5e-07  Score=83.91  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=36.3

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      |.+..+|||||||++|++||..|++.|++|+|+|++++++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            3446789999999999999999999999999999999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=1.3e-06  Score=73.86  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCc
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHM  144 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~  144 (441)
                      ..+++|||||||..|+.+|..+.+.|. .|+++.+++..
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            347799999999999999999999886 58899887643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=3.4e-07  Score=85.05  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.+|+||||||+||++|..|++.|++|+|||+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45899999999999999999999999999999863

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.30  E-value=2.3e-07  Score=84.02  Aligned_cols=37  Identities=24%  Similarity=0.164  Sum_probs=33.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+.+||||||||++|+++|..|+++|++|+|||++.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4457899999999999999999999999999999964

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.29  E-value=2.1e-07  Score=85.55  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=33.4

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||||++||++|..|++.|++|+|+|++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            79999999999999999999999999999998775

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.29  E-value=2.4e-07  Score=87.94  Aligned_cols=37  Identities=16%  Similarity=0.364  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      .|||+|||||++||++|..|++.|++|+|+|++++++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            5799999999999999999999999999999999987

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.28  E-value=1.1e-05  Score=76.56  Aligned_cols=34  Identities=9%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHhhcc----CCCeEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDT----KIYDAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~----~g~~Vtvie~~~~  143 (441)
                      .+|+|||+|+|||+||..+++    .|.+|+|+|+.+.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            489999999999999998864    7999999999754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=1.1e-07  Score=89.89  Aligned_cols=82  Identities=9%  Similarity=0.005  Sum_probs=55.1

Q ss_pred             cccc-ccccCcCCCCcCCCcccCccchhhhhcccccccccCCCCCCCCCCCCCCcEEEECCCHHHHHHHHhhcc--CCCe
Q 013561           58 IRMT-THMSSWSRGIKTTPHYQYHNAERIVEESESEYQELSYPGLEATKPGEKPRVVVLGTGWGACRFLKGIDT--KIYD  134 (441)
Q Consensus        58 vcp~-~ce~~c~~~~~~~~~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~k~VvIIGgG~aGl~aA~~L~~--~g~~  134 (441)
                      .||. .|++.|++.....+ ..+..+++.+.+.++.....  +.+   .....++|+||||||+|++||..|++  .|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~   77 (311)
T d2gjca1           4 STPVTHCLSDIVKKEDWSD-FKFAPIRESTVSRAMTSRYF--KDL---DKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLK   77 (311)
T ss_dssp             GSCCCCTTTTTCCSTTCTT-CCCCCCCHHHHHHHHHHHHH--HHH---HHTTEESEEEECCSHHHHHHHHHHHHHCTTSC
T ss_pred             cchhhhhhhhheecccccc-ceeeechhhHHHHHHHhhhc--ccc---ccccCCCEEEECCCHHHHHHHHHHHHhCCCCe
Confidence            4565 69999999765443 44555555444433321111  111   11225689999999999999999985  5999


Q ss_pred             EEEEcCCCCcc
Q 013561          135 AVCISPRNHMV  145 (441)
Q Consensus       135 Vtvie~~~~~~  145 (441)
                      |+|||++++++
T Consensus        78 ~~~~~~~~~~~   88 (311)
T d2gjca1          78 VCIIESSVAPG   88 (311)
T ss_dssp             EEEECSSSSCC
T ss_pred             EEEEEcCCCCc
Confidence            99999998765

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.8e-06  Score=73.23  Aligned_cols=28  Identities=11%  Similarity=0.008  Sum_probs=25.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAV  136 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vt  136 (441)
                      ++||+|||||+.|+.+|..+.+.|.+++
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            7899999999999999999999987543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=6.7e-07  Score=84.06  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +.+|+|||||++|+++|..|++.|++|+|||++++++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            3589999999999999999999999999999999886

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.2e-05  Score=65.36  Aligned_cols=92  Identities=13%  Similarity=0.091  Sum_probs=64.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE-EEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY-LASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v  187 (441)
                      .|+|+|||||.+++..|..|++..-+|+++.+.+.+.-            .    ....++    +.+.+++.++ +..+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~------------~----~~~~~~----~~~~~~I~v~~~~~v   89 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA------------D----QVLQDK----LRSLKNVDIILNAQT   89 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS------------C----HHHHHH----HHTCTTEEEESSEEE
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc------------c----cccccc----cccccceeEEcCcce
Confidence            78999999999999999999998889999988875430            0    011222    3344567766 4467


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      .++.-+.+   .+.+++..      .+++.+++.|.|+++.|
T Consensus        90 ~~i~G~~~~v~~v~l~~~~------tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          90 TEVKGDGSKVVGLEYRDRV------SGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEEEESSSSEEEEEEEETT------TCCEEEEECSEEEECSC
T ss_pred             EEEEccccceeeEEEEECC------CCCEEEEECCEEEEEeC
Confidence            78776533   24455532      24456899999999998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-06  Score=82.74  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcc
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMV  145 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~  145 (441)
                      +|+|||||++||++|..|++.|++|+|+|++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence            49999999999999999999999999999999775

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.9e-05  Score=64.09  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEE-EEEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFY-LASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v  187 (441)
                      .|+|+|||||-.++..|..|++..-+|+++-+.+.+.-.+             ..   ..++.+ ......+.+. +..+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~-------------~~---~~~~~~-~~~~~~i~~~~~~~v   89 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEK-------------IL---IKRLMD-KVENGNIILHTNRTL   89 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCH-------------HH---HHHHHH-HHHTSSEEEECSCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchh-------------HH---HHHHHH-hhcccceeEecceEE
Confidence            6799999999999999999999989999999887543111             01   112211 1123445544 3467


Q ss_pred             EEEeCCCC---EEEEEecCCCCCCCCCCcceeeCCEEEEcCC
Q 013561          188 IGIDTDKH---EVYCETVNNGKLSHEPHQFKVAYDKLVIAAG  226 (441)
Q Consensus       188 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yD~LvlAtG  226 (441)
                      .+|.-++.   .+++.+...+     .+.++++.|.|+++.|
T Consensus        90 ~~i~G~~~~v~~v~l~~~~~~-----e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          90 EEVTGDQMGVTGVRLRDTQNS-----DNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEEECSSSEEEEEEECCTTC-----CCCEEEECSEEEECSC
T ss_pred             EEEECCCCceEEEEEEECCCC-----ceEEEEECCEEEEEeC
Confidence            77776544   3455543211     1224689999999988

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.95  E-value=2.8e-06  Score=77.59  Aligned_cols=36  Identities=8%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~~~  145 (441)
                      -+|+|||||||||++|..|++.|. +|+|+|+++.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            489999999999999999999995 999999988653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=3.9e-06  Score=81.48  Aligned_cols=39  Identities=15%  Similarity=0.190  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc------CCCeEEEEcCCCCcccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT------KIYDAVCISPRNHMVFT  147 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~------~g~~Vtvie~~~~~~~~  147 (441)
                      ..+|+||||||||++||..|++      .|++|+|||+..+++..
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            4689999999999999999986      89999999999877644

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=4.4e-05  Score=71.56  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHhhccC--CCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTK--IYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~--g~~Vtvie~~~  142 (441)
                      .+|+|||+|.|||.||..+++.  |.+|+|+||..
T Consensus         6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            4799999999999999999874  78999999975

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.83  E-value=9.3e-05  Score=60.23  Aligned_cols=91  Identities=15%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCcccccchhhhhcCCCCccccccchhhhhhhhcCCCCEEEEE-EEE
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVFTPLLASTCVGTLEFRSVAEPVSRIQTSLSSDPNSYFYL-ASC  187 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~~~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v  187 (441)
                      .|+|+|||||-+++..|..|++.-.+|++|.+.+.+.-            +.    ..+++    +.+.+++.++. .++
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra------------~~----~~~~~----l~~~~nI~v~~~~~v   93 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA------------SK----IMQQR----ALSNPKIDVIWNSSV   93 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------CH----HHHHH----HHTCTTEEEECSEEE
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc------------ch----hhhhc----cccCCceEEEeccEE
Confidence            78999999999999999999998889999998886541            10    11222    33445666553 467


Q ss_pred             EEEeCCCC-----EEEEEecCCCCCCCCCCcceeeCCEEEEcC
Q 013561          188 IGIDTDKH-----EVYCETVNNGKLSHEPHQFKVAYDKLVIAA  225 (441)
Q Consensus       188 ~~id~~~~-----~v~~~~~~~~~~~~~~~~~~i~yD~LvlAt  225 (441)
                      .+|.-+.+     .+.+++..      .+++.+++.|.|+||.
T Consensus        94 ~~i~Gd~~~~~v~~v~l~~~~------tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          94 VEAYGDGERDVLGGLKVKNVV------TGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEESSSSSSEEEEEEEETT------TCCEEEEECSEEEECS
T ss_pred             EEEEccCCcccEEEEEEEECC------CCCEEEEECCEEEEEC
Confidence            77754332     35555532      2445689999999984

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.82  E-value=5.8e-06  Score=76.39  Aligned_cols=36  Identities=19%  Similarity=0.104  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHhhcc-CCCeEEEEcCCCCcc
Q 013561          110 PRVVVLGTGWGACRFLKGIDT-KIYDAVCISPRNHMV  145 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~-~g~~Vtvie~~~~~~  145 (441)
                      .+|+||||||+||++|..|++ .|++|+|||+++.++
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~G   70 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   70 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCC
Confidence            479999999999999999976 699999999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.78  E-value=5.4e-06  Score=75.90  Aligned_cols=33  Identities=12%  Similarity=0.082  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|||||.+|+++|.+|++.|++|+|||+.+
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999975

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.69  E-value=1e-05  Score=74.24  Aligned_cols=36  Identities=11%  Similarity=0.036  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||.+|+++|.+|+++|++|+|||+.+..
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~   38 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP   38 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            568999999999999999999999999999997643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.61  E-value=2e-05  Score=74.34  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhc-----cCCCeEEEEcCCCCccc
Q 013561          109 KPRVVVLGTGWGACRFLKGID-----TKIYDAVCISPRNHMVF  146 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~-----~~g~~Vtvie~~~~~~~  146 (441)
                      ..+|+||||||+|+++|..|+     +.|++|+|||+++.+.+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~   49 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY   49 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence            468999999999999999996     68999999999886653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.59  E-value=1.9e-05  Score=73.65  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            458999999999999999999999999999998643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.52  E-value=2.6e-05  Score=72.43  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +|+|||||.+|+++|.+|++.|. +|+|+|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            79999999999999999999995 799999974

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.45  E-value=3.4e-05  Score=73.30  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|||||||++|+.+|.+|++.|++|+|+|+...
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~   38 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI   38 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence            46899999999999999999999999999999754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.35  E-value=3.3e-05  Score=72.48  Aligned_cols=36  Identities=11%  Similarity=0.129  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..+|+|||+|++||++|..+++.|.+|+|+|+.+..
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS   54 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            458999999999999999999999999999998643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.21  E-value=9.6e-05  Score=70.34  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      .|||||+|++|+.+|.+|++.|++|+|+|+..+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            599999999999999999999999999999653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.13  E-value=0.00014  Score=61.45  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .|+|+|||+|..|..+|..|.+.|++|||++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5799999999999999999999999999999975

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00013  Score=67.79  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|+|||+||..+++.| +|+|+|+.+.
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~   40 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV   40 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence            468999999999999999999887 9999999864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=6e-05  Score=71.12  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+|+|||+|+|||.||..+++.|.+|+|+|+.+.
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            45899999999999999999999999999999753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00018  Score=54.79  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|||+|+|.|-+|+++|+.|.+.|++|+++|.+.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            6799999999999999999999999999999865

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.09  E-value=0.00015  Score=68.99  Aligned_cols=34  Identities=12%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ...|||||+|++|+.+|.+|++.|++|+|+|+..
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4579999999999999999999999999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.04  E-value=3e-05  Score=68.99  Aligned_cols=30  Identities=23%  Similarity=0.162  Sum_probs=25.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISP  140 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~  140 (441)
                      ||+|||||.+|+++|..|++.|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            799999999999999999999876555444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.94  E-value=0.00024  Score=60.53  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|||+|..|+.+|..|++.|++|+++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999999999999999999999999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.89  E-value=0.0017  Score=50.44  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..|+|+|||+|..|+..|..|++...+|+++.+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            37899999999999999999998777777776654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=96.72  E-value=0.00047  Score=65.65  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++||||||+||+.+|.+|++.|++|.|+|+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5689999999999999999999999999999974

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00056  Score=56.62  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ++++|+|||||..|++-|..|.+.|.+||||.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0011  Score=55.08  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ||+|||+|..|...|..|.+.|++|+++++.++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.44  E-value=0.0013  Score=51.55  Aligned_cols=34  Identities=12%  Similarity=-0.092  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|+|||+|..|..-|+.|.+.|.+|+++++..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999999997654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0014  Score=56.71  Aligned_cols=36  Identities=14%  Similarity=0.099  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +-+||+|||+|..|...|..++..|++|+++|+++.
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            357999999999999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.32  E-value=0.0012  Score=53.18  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|+|+|..|...|+.|.+.|++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            79999999999999999999999999999976

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.0011  Score=53.41  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+++|+|.|-.|..+|..|.+.|++|++||.++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            579999999999999999999999999999875

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=96.12  E-value=0.0015  Score=62.70  Aligned_cols=36  Identities=8%  Similarity=0.049  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCCc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNHM  144 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~~  144 (441)
                      ..++||||||++|+.+|.+|++.+ ++|.|+|+.+..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            368999999999999999999887 799999998643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.07  E-value=0.0027  Score=53.24  Aligned_cols=34  Identities=18%  Similarity=-0.007  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +-+|+|||+|.+|+.++..+.+.|.+|+++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            5699999999999999999999999999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.07  E-value=0.0018  Score=55.74  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.++||+|||+|.-|.++|..|++.|++|+++.+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            446789999999999999999999999999998865

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.03  E-value=0.0023  Score=61.14  Aligned_cols=35  Identities=9%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~  143 (441)
                      ..++||||||.||+.+|.+|++.+ ++|.|+|+.++
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            368999999999999999999865 89999999863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.02  E-value=0.0019  Score=55.42  Aligned_cols=35  Identities=17%  Similarity=0.079  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      -+||+|||+|..|...|..++..|++|+++|+++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            57899999999999999999999999999999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=95.97  E-value=0.0018  Score=61.30  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..++||||||+||+.+|.+|++. ++|.|+|+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            46899999999999999999986 99999999864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.96  E-value=0.018  Score=49.82  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|||+|||+|-.|+.+|..+++.+.+++++-+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            47899999999999999999998888888776654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.90  E-value=0.0038  Score=53.05  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +-+|+|||+|.+|+.||....+.|..|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            5599999999999999999999999999999876

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0051  Score=50.49  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCCcEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          108 EKPRVVVLG-TGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ..+||+||| .|-.|...|..|.+.||+|+++|++..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            467999999 699999999999999999999999764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.82  E-value=0.0026  Score=55.22  Aligned_cols=33  Identities=9%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ||.|||.|+.|+.+|..|++.|++|+.+|.+..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            799999999999999999999999999998763

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.79  E-value=0.048  Score=47.29  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhc--------------------cCCC-eEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGID--------------------TKIY-DAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~--------------------~~g~-~Vtvie~~~  142 (441)
                      .+++|+|||+|-.++-+|+.|.                    +.|. +|+++.|+.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            4689999999999999998775                    4554 699998875

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0054  Score=48.83  Aligned_cols=39  Identities=13%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CCCCCcEEEECCC-----------HHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          106 PGEKPRVVVLGTG-----------WGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       106 ~~~~k~VvIIGgG-----------~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ....+||+|||+|           |++..+++.|++.|++++++..++.-
T Consensus         4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            3457899999998           68899999999999999999988754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.24  E-value=0.0085  Score=49.54  Aligned_cols=37  Identities=14%  Similarity=0.086  Sum_probs=30.7

Q ss_pred             CCCCCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          106 PGEKPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       106 ~~~~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+++||+|||+|..|.++|..|...++ +++++|.++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3446899999999999999988876664 899998776

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.21  E-value=0.0066  Score=49.79  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      +++||+|||+|..|.++|..|...|  .+++++|.++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4679999999999999999998766  5899999765

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.011  Score=46.43  Aligned_cols=37  Identities=14%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             CCCcEEEECCC-----------HHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTG-----------WGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG-----------~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ..++|+|||+|           |++..+++.|++.|++++++..++.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            36799999998           68899999999999999999988754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.011  Score=50.92  Aligned_cols=36  Identities=11%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             CCCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |.+|||+|+|| |..|-.++.+|.+.|++|+++.|++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            45789999995 9999999999999999999998865

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.86  E-value=0.011  Score=49.01  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.|||.|..|.+.|+.|.+.|++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            79999999999999999999999999998875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.68  E-value=0.0012  Score=58.47  Aligned_cols=38  Identities=8%  Similarity=0.133  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCccc
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHMVF  146 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~~~  146 (441)
                      .++|+|||||+.|+++|..|++.|.+|||+++.+...+
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            57899999999999999999999999999999987654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.60  E-value=0.015  Score=49.66  Aligned_cols=32  Identities=9%  Similarity=0.119  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ||+|||.|+.|+.+|..++ .|++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            7999999999999998887 5999999998864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.56  E-value=0.015  Score=48.66  Aligned_cols=32  Identities=31%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             cEEEE-CCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVL-GTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvII-GgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|| |+|-.|.+.|..|++.|++|+|..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            69999 669999999999999999999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.32  E-value=0.015  Score=47.64  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ..++||.|||+|..|.++|..|...+.  ++.|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            346799999999999999999987654  899999765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.10  E-value=0.021  Score=47.34  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|.+|+++|+++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            6689999999999999999988999999999875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.08  E-value=0.017  Score=51.63  Aligned_cols=37  Identities=11%  Similarity=0.160  Sum_probs=33.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ++|||+|+|| |+.|-.++..|.+.|++|+++++++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            4789999997 999999999999999999999987643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.023  Score=46.96  Aligned_cols=34  Identities=12%  Similarity=-0.012  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|.+|+++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            6789999999999999998888999999999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.042  Score=42.49  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      ...||.|||||--|..+|....+.|++|.++|+++..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            3568999999999999999999999999999998753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.024  Score=47.16  Aligned_cols=34  Identities=18%  Similarity=-0.001  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|. +|+++|+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            5689999999999999999998998 799998875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.83  E-value=0.018  Score=48.57  Aligned_cols=31  Identities=13%  Similarity=0.045  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +|+|||+|.-|.+.|..|++.|++|+++.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            7999999999999999999999999999663

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.026  Score=46.92  Aligned_cols=35  Identities=14%  Similarity=-0.043  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +.+|+|+|+|+.|+.+++.+...|.+|++++.++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            67999999999999999888888999999998764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.028  Score=46.85  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|+|+|+|-++-+++..|.+.|.+|+|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            7899999999999999999999999999998764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.66  E-value=0.025  Score=45.92  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      ++||.|||+|..|.++|..|...+. ++.++|.++.
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            3589999999999999999887654 8999987663

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.59  E-value=0.024  Score=46.93  Aligned_cols=34  Identities=9%  Similarity=0.066  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +++|.|||-|..|...|+.|.+.||+|+++|+++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            3589999999999999999999999999999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.57  E-value=0.023  Score=51.12  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=31.6

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ++||+|+|| |+.|..++..|.+.|++|+++.|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            668999997 99999999999999999999988653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.54  E-value=0.032  Score=49.29  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=26.4

Q ss_pred             ccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 013561          300 RAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFN  344 (441)
Q Consensus       300 qt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~  344 (441)
                      .+ ++|++|++||..     .|     .....|+.+|+.+|+.|.
T Consensus       313 ~~-~~p~~~~~G~~~-----~g-----~~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         313 LQ-RLPGLHLIGNAY-----KG-----VGLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HH-TSTTEEECSTTT-----SC-----CSHHHHHHHHHHHHHHHC
T ss_pred             cc-CCCCEEEecccc-----cC-----CCHHHHHHHHHHHHHHhh
Confidence            35 799999999986     12     245668899999999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.33  E-value=0.027  Score=45.89  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      |||+|||+|..|.++|..|...|  .++.++|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999988655  4899998765

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.22  E-value=0.034  Score=46.71  Aligned_cols=35  Identities=14%  Similarity=-0.020  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~~  143 (441)
                      +.+|+|+|+|+.|+.+++.+...|. +|+++++++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccc
Confidence            6799999999999999999988997 7999998763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.19  E-value=0.061  Score=44.36  Aligned_cols=35  Identities=14%  Similarity=0.120  Sum_probs=30.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ++.||+|||+|..|.++|..|...+.  ++.|+|.++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            35689999999999999999988765  899998765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.09  E-value=0.042  Score=45.44  Aligned_cols=34  Identities=15%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      +|+|.|||.|-.|.+.|+.|.+.|+  +|+.+|++.
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            3589999999999999999998875  788888765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.06  E-value=0.045  Score=44.30  Aligned_cols=34  Identities=15%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRNH  143 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~~  143 (441)
                      +||+|||+|..|.++|..|...+.  ++.|+|..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            589999999999999999987654  8999997763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.94  E-value=0.074  Score=43.87  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      .+||+|||+|..|.++|..|...|.  ++.++|.++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            5699999999999999999988775  899999865

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.05  Score=44.24  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|.|..|..++..|.+.|++|++||.++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            4479999999999999999999999999998875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.049  Score=45.01  Aligned_cols=34  Identities=18%  Similarity=0.044  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|.++++++.++
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            6799999999999999988888999999998765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.04  Score=45.61  Aligned_cols=35  Identities=11%  Similarity=-0.088  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+|+|+|+|-|..|-.+|..++..|.+|+++|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            37899999999999999999999999999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.71  E-value=0.011  Score=46.70  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             CCCCCCcccccccccCHhHHHHHHHHHHH--hcccccCCCCceeEeeC
Q 013561          231 TFGIKGVKENAYFLREVNHAQEIRKKLLL--NLMLSENPGDTVQLFSK  276 (441)
Q Consensus       231 ~~~ipG~~~~~~~l~~~~~a~~~~~~i~~--~~~~a~~~G~~~vE~a~  276 (441)
                      .|++||.+..++++++++|+.++++.+..  .+.+.+ +|..|+|+|.
T Consensus         1 iP~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIG-gG~iG~E~A~   47 (121)
T d1d7ya2           1 LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVG-GGVIGLELAA   47 (121)
T ss_dssp             CGGGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEEC-CSHHHHHHHH
T ss_pred             CccCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEEC-cchhHHHHHH
Confidence            37889988779999999999999887632  233444 7899999983

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.055  Score=38.95  Aligned_cols=35  Identities=14%  Similarity=0.006  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCCCc
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRNHM  144 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~~~  144 (441)
                      |+|.|+|||=-|...+....+.|++|.++++++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            68999999999999999999999999999987644

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.58  E-value=0.041  Score=49.58  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=27.5

Q ss_pred             CCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 013561          303 SVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKK  346 (441)
Q Consensus       303 ~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~  346 (441)
                      ...+||.+||++..+        ...+..|+..|..||.+|...
T Consensus       332 ~~g~v~~aGd~~~~~--------~~~~~~a~~sG~~aA~~i~~a  367 (370)
T d2iida1         332 SQGRIYFAGEYTAQA--------HGWIDSTIKSGLRAARDVNLA  367 (370)
T ss_dssp             CBTTEEECSGGGSSS--------SSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEecccccCC--------CcccHHHHHHHHHHHHHHHhh
Confidence            346799999988321        235778999999999999843

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=92.48  E-value=0.059  Score=43.64  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=29.0

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      |.||+|||+|..|.++|..|...+.  ++.|+|.++
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3589999999999999999987664  899998764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.38  E-value=0.024  Score=44.52  Aligned_cols=47  Identities=19%  Similarity=0.135  Sum_probs=37.4

Q ss_pred             CcCCCCCCCcccccccccCHhHHHHHHHHHHHh--cccccCCCCceeEeeC
Q 013561          228 EPLTFGIKGVKENAYFLREVNHAQEIRKKLLLN--LMLSENPGDTVQLFSK  276 (441)
Q Consensus       228 ~p~~~~ipG~~~~~~~l~~~~~a~~~~~~i~~~--~~~a~~~G~~~vE~a~  276 (441)
                      +|+.|++||. +++++++++.|+.++.+.+...  +.+.+ +|..|+|+|.
T Consensus         1 R~r~p~ipG~-e~~~t~~~~~d~~~l~~~~~~~~~vvIiG-gG~iG~E~A~   49 (122)
T d1xhca2           1 RAREPQIKGK-EYLLTLRTIFDADRIKESIENSGEAIIIG-GGFIGLELAG   49 (122)
T ss_dssp             EECCCCSBTG-GGEECCCSHHHHHHHHHHHHHHSEEEEEE-CSHHHHHHHH
T ss_pred             CCCCcCCCCc-cceEccCCHHHHHHHHHHhhcCCcEEEEC-CcHHHHHHHH
Confidence            4788999997 7899999999999998887432  33444 7999999984

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.16  E-value=0.057  Score=45.08  Aligned_cols=34  Identities=3%  Similarity=0.127  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..+|.|||-|..|..+|..|.+.|++|+++++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3489999999999999999999999999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.07  E-value=0.077  Score=44.30  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|. +|++.|.++
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            6789999999999999999999997 577777765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.04  E-value=0.068  Score=44.59  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|. +|++++.++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            6789999999999999999988896 699998875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.87  E-value=0.054  Score=44.50  Aligned_cols=32  Identities=19%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.|||-|..|...|..|.+.|++|+++++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            69999999999999999999999999998865

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.86  E-value=0.13  Score=43.17  Aligned_cols=36  Identities=22%  Similarity=0.039  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      -.+++|.|||.|.+|-..|..+...|.+|..+++..
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            457899999999999999999999999999998865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.45  E-value=0.06  Score=44.19  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|.+|++++.++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            6789999999999999999988999999998765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.45  E-value=0.067  Score=44.33  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|+|+|-++-+++..|.+.|. +|+|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            5789999999999999999999996 799997764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.41  E-value=0.086  Score=44.56  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=31.9

Q ss_pred             CCCcEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.|+|+|.| +|-+|.++|+.|++.|.+|++++++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            378999999 58999999999999999999998875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.17  E-value=0.079  Score=42.98  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.|||.|-.|...|+.|.+.|++|+++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            79999999999999999999999999997665

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.14  E-value=0.092  Score=48.40  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=31.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|+|+|| |+.|-.++..|.+.|++|+++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3789999996 9999999999999999999998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.97  E-value=0.1  Score=48.27  Aligned_cols=34  Identities=9%  Similarity=0.180  Sum_probs=30.4

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..||+|.|| |+.|-.++..|.+.|++|+++++..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            557999995 9999999999999999999998654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.86  E-value=0.12  Score=43.03  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      +..|+|+|+|+.|+.+++.+...| .+|+++|.++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            668999999999999999999988 4799999876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=90.82  E-value=0.071  Score=43.94  Aligned_cols=34  Identities=12%  Similarity=-0.107  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+++|+|=|+.|--+|..|+..|.+|+|.|.+|
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            7899999999999999999999999999999876

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.81  E-value=0.11  Score=41.84  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHhhccCC--CeEEEEcCCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI--YDAVCISPRNH  143 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~~  143 (441)
                      ||+|||+|..|.++|..|...+  .+++++|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            7999999999999999998765  58999998763

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.80  E-value=0.098  Score=48.07  Aligned_cols=34  Identities=21%  Similarity=0.080  Sum_probs=31.3

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .|||+|.|| |+.|..++..|.+.|++|..+++..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            689999995 8999999999999999999998865

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.047  Score=49.84  Aligned_cols=55  Identities=16%  Similarity=0.127  Sum_probs=41.5

Q ss_pred             CceeeCCCcccCCCCCEEEecccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Q 013561          291 SQIGVDEWLRAPSVEDVFALGDCAGFLEQTGKPVLPALAQVAERQGKYLAELFNKKIG  348 (441)
Q Consensus       291 G~I~Vd~~lqt~~~~~VfA~GD~a~~~~~~G~~~~p~~a~~A~~qg~~aA~nI~~~l~  348 (441)
                      +.|.++..+++ +.|++|++||++...+  |.+..-++...++..|+.||+.|.+.|+
T Consensus       256 ~~iv~~~~~~~-~~pgl~~~Gdaa~~v~--g~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         256 HDVVIHSGAYA-GVDNMYFAGMEVAELD--GLNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             HHHHHHCEECT-TSTTEEECTHHHHHHH--TCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCcEE-ccCCEEEEeeecCccc--CcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            45777777888 8999999999875432  2212224677788999999999998885

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.36  E-value=0.1  Score=43.31  Aligned_cols=32  Identities=19%  Similarity=0.197  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||-|||-|.-|...|+.|.+.|++|++++++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999999999999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.30  E-value=0.11  Score=42.79  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|||+|-.|-.++..|...|. +++|+.|..
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            6799999999999999999999887 699998763

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.11  Score=47.26  Aligned_cols=33  Identities=9%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      +|||+|.|| |+.|-.++.+|.+.|++|+.+++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            479999996 999999999999999999999763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.02  E-value=0.12  Score=42.87  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.++..|. +|+++|.++
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            6789999999999999999988885 688887765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.98  E-value=0.16  Score=42.25  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .|+|+|+|+|-++-+++..|.+.| +|+|+.|+.
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            679999999999999999998877 999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.85  E-value=0.11  Score=38.84  Aligned_cols=38  Identities=8%  Similarity=-0.004  Sum_probs=32.9

Q ss_pred             CCCCCCcEEEECCCHHHHHH-HHhhccCCCeEEEEcCCC
Q 013561          105 KPGEKPRVVVLGTGWGACRF-LKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       105 ~~~~~k~VvIIGgG~aGl~a-A~~L~~~g~~Vtvie~~~  142 (441)
                      .+...++|-+||-|=+||++ |+.|...|++|+--|...
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            44557899999999999988 899999999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.77  E-value=0.13  Score=43.67  Aligned_cols=34  Identities=12%  Similarity=-0.132  Sum_probs=28.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.++..+...|. +|++++.++
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            7799999999999998888876665 788887664

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=89.76  E-value=0.11  Score=43.26  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+|+|+|-++-+++..|.+.+.+|+|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            6799999999999999999988888999998864

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.71  E-value=0.11  Score=44.18  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=27.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCC--eEEEEcCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIY--DAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~--~Vtvie~~  141 (441)
                      ++|||+|.|| |+.|-.++.+|.+.|+  +|++..++
T Consensus         1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            3689999998 9999999999998887  45555443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.18  Score=42.16  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .++|+|+|+|-+|-+++..|.+.|. +++|+.+.+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            6799999999999999999998876 799998875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.28  E-value=0.13  Score=47.09  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.4

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .|||+|.|| |+.|-..+.+|.+.|++|+++|+..
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            479999996 9999999999999999999998643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.26  E-value=0.19  Score=40.84  Aligned_cols=35  Identities=23%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~~  143 (441)
                      +.||.|||+|..|.++|..|...+ .++.|+|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            458999999999999998777654 38999987653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.75  E-value=0.17  Score=40.89  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             cEEEECC-CHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ||+|||+ |..|.++|..|...+  .++.|+|.++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            7999995 999999999998877  4899998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.59  E-value=0.17  Score=44.45  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|.|| |+.|-.++..|...|++|+.+++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            6999998 9999999999999999999998865

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.35  E-value=0.24  Score=40.00  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||.|||+|-.|-+.|..|.+.|++|++.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            79999999999999999999999999998764

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.92  E-value=0.21  Score=39.00  Aligned_cols=31  Identities=13%  Similarity=0.167  Sum_probs=26.9

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|+|.|..|.+++..|.  +++|+++|.++
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~   31 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDE   31 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcch
Confidence            57999999999999999995  56788998765

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.80  E-value=0.23  Score=45.33  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=31.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+|+|.|| |+.|-.++.+|.+.|++|+.+++..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            3678999996 9999999999999999999998754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.76  E-value=0.28  Score=40.24  Aligned_cols=34  Identities=12%  Similarity=0.096  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.++..++..|. +|++++.++
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            6789999999999999998887765 688887765

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.66  E-value=0.2  Score=40.27  Aligned_cols=32  Identities=16%  Similarity=0.061  Sum_probs=27.5

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCC--eEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIY--DAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~--~Vtvie~~~  142 (441)
                      ||+|||+ |..|.++|..|...+.  ++.++|.++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999987764  799998654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=87.61  E-value=0.29  Score=40.24  Aligned_cols=34  Identities=12%  Similarity=0.111  Sum_probs=29.7

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      +.+|+|+|+|..|+.++..++..| .+|++++.++
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            678999999999999999999887 4788887765

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.54  E-value=0.22  Score=44.80  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             CcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|.|| |+.|-.++..|.+.||+|+.+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999997 9999999999999999999998865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.48  E-value=0.21  Score=41.31  Aligned_cols=34  Identities=12%  Similarity=0.020  Sum_probs=27.4

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCCeE-EEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIYDA-VCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~~V-tvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|.++ ++.+.++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            678999999999999998888877765 4555544

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.39  E-value=0.19  Score=46.88  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEc
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCIS  139 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie  139 (441)
                      ++||+|.|| |+.|-.++..|.+.||+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            468999996 9999999999999999999997

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=0.19  Score=44.04  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            4599999999999999999999997 799998653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.87  E-value=0.26  Score=41.83  Aligned_cols=35  Identities=20%  Similarity=0.114  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|.|||.|-+|..+|+.|...|.+|..+++..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            36899999999999999999999999999998864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.85  E-value=0.43  Score=41.14  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccC--------------------C-CeEEEEcCCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTK--------------------I-YDAVCISPRNH  143 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~--------------------g-~~Vtvie~~~~  143 (441)
                      ..++|+|||+|-.+|-+|+.|.+.                    | .+|+++.++..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            378999999999999999998773                    4 48999998863

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.77  E-value=0.38  Score=43.89  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      .+|+|+|.|| |+.|..++..|.+.|++|....++
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            3789999996 999999999999999999876654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.75  E-value=0.27  Score=44.51  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+++|.|| |+.|..++..|.+.||+|+.+++..
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            467888886 9999999999999999999999865

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=86.74  E-value=0.31  Score=41.47  Aligned_cols=35  Identities=11%  Similarity=-0.006  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|+|.|.|-.|..+|+.|.+.|.+|++.|.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            37899999999999999999999999999987653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.70  E-value=0.24  Score=45.27  Aligned_cols=32  Identities=19%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ||+|+|| |+.|-.++..|.+.|++|+++++..
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6999996 9999999999999999999998643

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.57  E-value=0.24  Score=39.69  Aligned_cols=32  Identities=6%  Similarity=0.005  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ||+|||+|..|.++|..|...+  -++.|+|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            7999999999999999887654  4799998765

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=86.53  E-value=0.26  Score=44.22  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      +|||+|.|| |+.|-.++.+|.+.|+.|++++..+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~   37 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE   37 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh
Confidence            579999997 99999999999999999988876553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.27  E-value=0.31  Score=41.33  Aligned_cols=35  Identities=17%  Similarity=0.087  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|.|||-|-.|-.+|+.|...|.+|..+++..
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            47899999999999999999999999999998754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.15  E-value=0.17  Score=42.90  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=27.1

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEc
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCIS  139 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie  139 (441)
                      +++|+|.|| |+.|..++..|.+.|++|+++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            679999995 9999999999999998876653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.13  E-value=0.37  Score=41.75  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +|+|+|.|| |-.|.++|+.|++.|++|.++++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            689999998 5699999999999999999998765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.99  E-value=0.26  Score=39.37  Aligned_cols=32  Identities=16%  Similarity=0.115  Sum_probs=27.3

Q ss_pred             cEEEECCCHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ||+|||+|..|.++|..|...+  .++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            7999999999999998887644  5899998765

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=85.79  E-value=0.43  Score=40.25  Aligned_cols=35  Identities=9%  Similarity=0.067  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .+++|.|||-|-+|-.+|+.|...|.+|..+++..
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            47899999999999999999999999999998754

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.72  E-value=0.32  Score=44.26  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             CcE-EEECC-CHHHHHHHHhhccCCCeEEEEcCCCC
Q 013561          110 PRV-VVLGT-GWGACRFLKGIDTKIYDAVCISPRNH  143 (441)
Q Consensus       110 k~V-vIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~~  143 (441)
                      ||| +|.|| |+.|-.++.+|.+.||+|+.+++.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            578 68886 89999999999999999999998653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.44  E-value=0.3  Score=38.19  Aligned_cols=35  Identities=9%  Similarity=0.040  Sum_probs=26.6

Q ss_pred             CCcEEEECCCHHHHHHHHhhcc-CCCeE-EEEcCCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDT-KIYDA-VCISPRNH  143 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~-~g~~V-tvie~~~~  143 (441)
                      +.+|+|+|+|-+|.+++..+.. .++++ ..||.++.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            4589999999999999988864 56775 45565553

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.36  E-value=0.098  Score=40.89  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CCCcc-cccccccCHhHHHHHHHHHHH----hcccccCCCCceeEeeC
Q 013561          234 IKGVK-ENAYFLREVNHAQEIRKKLLL----NLMLSENPGDTVQLFSK  276 (441)
Q Consensus       234 ipG~~-~~~~~l~~~~~a~~~~~~i~~----~~~~a~~~G~~~vE~a~  276 (441)
                      |||.+ ++++++++++|+.++++.+..    .+.+.+ +|..|+|+|.
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViG-gG~iG~E~A~   47 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIG-SGYIGIEAAE   47 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEEC-CSHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEEC-ChHHHHHHHH
Confidence            68886 899999999999999988732    233344 7888999883

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.15  E-value=0.33  Score=39.86  Aligned_cols=34  Identities=9%  Similarity=0.110  Sum_probs=28.1

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|+.|+.+++.+...|. .|++++.++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            6789999999999999988877664 667777765

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.03  E-value=0.27  Score=42.40  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCC--CeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKI--YDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g--~~Vtvie~~~  142 (441)
                      ++++|+|.|| |+.|-..+.+|.+.|  ++|+++.|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            3678999997 999999999998777  4899998865

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=84.29  E-value=0.36  Score=38.78  Aligned_cols=32  Identities=22%  Similarity=0.187  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          111 RVVVLGTGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       111 ~VvIIGgG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      ||.+||+|.-|-+.|..|.+.| ++|.++++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            7999999999999999887665 8999998865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.23  E-value=0.36  Score=39.39  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=28.9

Q ss_pred             CCcEEEEC-CCHHHHHHHHhhccCC-CeEEEEcCCC
Q 013561          109 KPRVVVLG-TGWGACRFLKGIDTKI-YDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIG-gG~aGl~aA~~L~~~g-~~Vtvie~~~  142 (441)
                      +.+|+|+| +|+.|+.+++.+...| .+|++++.++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            66899999 5999999998888777 5889998775

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.18  E-value=0.67  Score=41.29  Aligned_cols=35  Identities=9%  Similarity=-0.098  Sum_probs=29.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|.++|-|| |-.|.++|+.|++.|++|++.+++.
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3577788774 6799999999999999999998875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.07  E-value=0.48  Score=38.83  Aligned_cols=34  Identities=12%  Similarity=-0.046  Sum_probs=29.5

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|+|+ |+.|+.+.+.+...|.+|+++..++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccc
Confidence            678999996 9999999888888999998887654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.72  E-value=0.57  Score=39.16  Aligned_cols=35  Identities=9%  Similarity=-0.018  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++|.|||-|.+|..+|+.+...|.+|..+++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            47899999999999999999999999999998764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=83.23  E-value=0.44  Score=41.72  Aligned_cols=36  Identities=14%  Similarity=-0.030  Sum_probs=29.9

Q ss_pred             CCCCcEEEECC-CH--HHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGT-GW--GACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGg-G~--aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+++|.|+ |-  .|.+.|+.|++.|++|++.+++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            34789999995 43  89999999999999999987654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=83.18  E-value=0.27  Score=45.04  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=25.4

Q ss_pred             CCcEEEEC-CCHHHHHHHHhhccCCCeEEEE
Q 013561          109 KPRVVVLG-TGWGACRFLKGIDTKIYDAVCI  138 (441)
Q Consensus       109 ~k~VvIIG-gG~aGl~aA~~L~~~g~~Vtvi  138 (441)
                      ++||+|.| +|+.|-.++.+|.+.|++|+++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            67899999 5999999999998888765444

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.96  E-value=0.52  Score=41.48  Aligned_cols=35  Identities=6%  Similarity=-0.077  Sum_probs=30.5

Q ss_pred             CCCcEEEECC-C--HHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGT-G--WGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGg-G--~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+++|.|+ |  =.|.+.|+.|++.|++|++.++++
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999996 3  499999999999999999998865

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=82.33  E-value=0.72  Score=38.51  Aligned_cols=35  Identities=11%  Similarity=0.004  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++|.|||.|-.|...|+.|...|.+|..+++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            47899999999999999999999999999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.15  E-value=0.56  Score=41.10  Aligned_cols=33  Identities=6%  Similarity=-0.032  Sum_probs=26.9

Q ss_pred             CcEEE-ECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVV-LGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvI-IGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |||+| -|| +-.|.+.|+.|++.|++|++.++++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57754 465 4689999999999999999998764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.93  E-value=0.51  Score=43.35  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             CcEEEEC-CCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLG-TGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIG-gG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |+|+|.| +|+.|-.++.+|.+.|++|+.+++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4667889 69999999999999999999999864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.80  E-value=0.61  Score=38.00  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=27.9

Q ss_pred             CCcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          109 KPRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      +.+|+|+|+|..|+.+++.++..|. .|++++.++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            6789999999999999999988886 566665544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.61  E-value=0.6  Score=37.24  Aligned_cols=31  Identities=19%  Similarity=0.168  Sum_probs=26.4

Q ss_pred             cEEEEC-CCHHHHHHHHhhccCCC--eEEEEcCC
Q 013561          111 RVVVLG-TGWGACRFLKGIDTKIY--DAVCISPR  141 (441)
Q Consensus       111 ~VvIIG-gG~aGl~aA~~L~~~g~--~Vtvie~~  141 (441)
                      ||.||| +|..|.++|..|...+.  ++.++|-.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            799999 69999999999987664  79998753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.93  E-value=0.62  Score=38.13  Aligned_cols=34  Identities=12%  Similarity=0.052  Sum_probs=29.6

Q ss_pred             CCcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          109 KPRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       109 ~k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      +.+|+|.|+ |+.|+.+.+.+...|.+|+.++.++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            678999996 9999999888888999999888765

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.92  E-value=0.58  Score=41.33  Aligned_cols=36  Identities=11%  Similarity=0.004  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCC-HHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTG-WGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG-~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      -++|+++|.||+ =.|.++|+.|++.|++|.+.+++.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            457889999975 589999999999999999998865

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.89  E-value=0.9  Score=37.75  Aligned_cols=36  Identities=19%  Similarity=-0.044  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTGWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ..++++.|||.|-.|-..|+.+...|.+|..+++..
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            347899999999999999999999999999998754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.5  Score=45.00  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHhhccCCC-eEEEEcCCC
Q 013561          110 PRVVVLGTGWGACRFLKGIDTKIY-DAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGgG~aGl~aA~~L~~~g~-~Vtvie~~~  142 (441)
                      .||+|||+|-.|.++|..|+..|. +++|+|...
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            489999999999999999999997 799998864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.50  E-value=0.68  Score=41.13  Aligned_cols=36  Identities=8%  Similarity=-0.092  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCC---HHHHHHHHhhccCCCeEEEEcCCC
Q 013561          107 GEKPRVVVLGTG---WGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       107 ~~~k~VvIIGgG---~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      .++|+++|-|++   =.|.+.|+.|++.|.+|++.++.+
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            457899999975   599999999999999999987654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=80.48  E-value=0.6  Score=41.83  Aligned_cols=31  Identities=10%  Similarity=0.152  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHhhccCCCeEEEEcCC
Q 013561          111 RVVVLGT-GWGACRFLKGIDTKIYDAVCISPR  141 (441)
Q Consensus       111 ~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~  141 (441)
                      ||+|.|| |+.|-.++..|.+.|++|+.+++-
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            7999986 999999999999999999999753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.43  E-value=0.63  Score=40.65  Aligned_cols=35  Identities=6%  Similarity=-0.013  Sum_probs=29.4

Q ss_pred             CCCcEEEECCC---HHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTG---WGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG---~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|.++|.|++   =.|.+.|+.|++.|++|++.++++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            37789999963   389999999999999998887654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=0.78  Score=39.86  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CCCcEEEECCC-HHHHHHHHhhccCCCeEEEEcCCC
Q 013561          108 EKPRVVVLGTG-WGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       108 ~~k~VvIIGgG-~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      ++|+++|.||+ -.|.+.|+.|++.|++|++.+++.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            47889999974 689999999999999999998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.11  E-value=0.73  Score=41.89  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=28.1

Q ss_pred             CcEEEECC-CHHHHHHHHhhccCCCeEEEEcCCC
Q 013561          110 PRVVVLGT-GWGACRFLKGIDTKIYDAVCISPRN  142 (441)
Q Consensus       110 k~VvIIGg-G~aGl~aA~~L~~~g~~Vtvie~~~  142 (441)
                      |.|+|.|| |+.|-.++..|.+.|++|+++++..
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~   35 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCC
Confidence            34778785 8999999999999999999998644